EP1725686A4 - Zusammensetzung zur verwendung bei der identifizierung von bakterien - Google Patents
Zusammensetzung zur verwendung bei der identifizierung von bakterienInfo
- Publication number
- EP1725686A4 EP1725686A4 EP05856582A EP05856582A EP1725686A4 EP 1725686 A4 EP1725686 A4 EP 1725686A4 EP 05856582 A EP05856582 A EP 05856582A EP 05856582 A EP05856582 A EP 05856582A EP 1725686 A4 EP1725686 A4 EP 1725686A4
- Authority
- EP
- European Patent Office
- Prior art keywords
- bacteria
- compositions
- identification
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Withdrawn
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US54542504P | 2004-02-18 | 2004-02-18 | |
US55975404P | 2004-04-05 | 2004-04-05 | |
US63286204P | 2004-12-03 | 2004-12-03 | |
US63906804P | 2004-12-22 | 2004-12-22 | |
US64818805P | 2005-01-28 | 2005-01-28 | |
PCT/US2005/006133 WO2006071241A2 (en) | 2004-02-18 | 2005-02-18 | Compositions for use in identification of bacteria |
Publications (2)
Publication Number | Publication Date |
---|---|
EP1725686A2 EP1725686A2 (de) | 2006-11-29 |
EP1725686A4 true EP1725686A4 (de) | 2008-12-10 |
Family
ID=35125687
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
EP05856582A Withdrawn EP1725686A4 (de) | 2004-02-18 | 2005-02-18 | Zusammensetzung zur verwendung bei der identifizierung von bakterien |
Country Status (5)
Country | Link |
---|---|
EP (1) | EP1725686A4 (de) |
JP (1) | JP2007525978A (de) |
AU (2) | AU2005322640B2 (de) |
CA (1) | CA2560521C (de) |
WO (2) | WO2006071241A2 (de) |
Families Citing this family (47)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2009155061A2 (en) * | 2008-05-30 | 2009-12-23 | Ibis Biosciences, Inc. | Compositions for use in identification of strains of e. coli o157:h7 |
US20040121311A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in livestock |
US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
CA2348042A1 (en) | 2001-06-04 | 2002-12-04 | Ann Huletsky | Sequences for detection and identification of methicillin-resistant staphylococcus aureus |
US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
JP2006516193A (ja) | 2002-12-06 | 2006-06-29 | アイシス・ファーマシューティカルス・インコーポレーテッド | ヒトおよび動物における病原体の迅速な同定方法 |
US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US8288523B2 (en) | 2003-09-11 | 2012-10-16 | Ibis Biosciences, Inc. | Compositions for use in identification of bacteria |
US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US8163895B2 (en) | 2003-12-05 | 2012-04-24 | Ibis Biosciences, Inc. | Compositions for use in identification of orthopoxviruses |
US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
CA2567839C (en) | 2004-05-24 | 2011-06-28 | Isis Pharmaceuticals, Inc. | Mass spectrometry with selective ion filtration by digital thresholding |
US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
EP1869180B1 (de) | 2005-03-03 | 2013-02-20 | Ibis Biosciences, Inc. | Zusammensetzung zur Verwendung bei der Identifikation von Polyomaviren |
US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
US8026084B2 (en) | 2005-07-21 | 2011-09-27 | Ibis Biosciences, Inc. | Methods for rapid identification and quantitation of nucleic acid variants |
US11834720B2 (en) | 2005-10-11 | 2023-12-05 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx |
BRPI0605802A (pt) * | 2005-11-21 | 2007-09-04 | Biosigma Sa | método e arranjo para detectar e indentificar os microorganismos presentes em uma amostra usando as regiões genÈmicas que codificam para as distintas rnat sintetases |
WO2008143627A2 (en) * | 2006-09-14 | 2008-11-27 | Ibis Biosciences, Inc. | Targeted whole genome amplification method for identification of pathogens |
EP2126132B1 (de) | 2007-02-23 | 2013-03-20 | Ibis Biosciences, Inc. | Verfahren für schnelle forensische dna-analyse |
EP1997905A1 (de) * | 2007-06-01 | 2008-12-03 | Friesland Brands B.V. | Amplifikation von Nukleinsäure |
US9598724B2 (en) | 2007-06-01 | 2017-03-21 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
WO2010033627A2 (en) | 2008-09-16 | 2010-03-25 | Ibis Biosciences, Inc. | Sample processing units, systems, and related methods |
EP2344893B1 (de) | 2008-09-16 | 2014-10-15 | Ibis Biosciences, Inc. | Mikroplatten-handhabungssysteme und verfahren |
EP2349549B1 (de) | 2008-09-16 | 2012-07-18 | Ibis Biosciences, Inc. | Mischpatronen, mischstationen und verwandte ausrüstungen, und system |
US20110183345A1 (en) * | 2008-10-03 | 2011-07-28 | Ibis Biosciences, Inc. | Compositions for use in identification of streptococcus pneumoniae |
EP2396803A4 (de) | 2009-02-12 | 2016-10-26 | Ibis Biosciences Inc | Ionisationssondenanordnungen |
WO2010114842A1 (en) | 2009-03-30 | 2010-10-07 | Ibis Biosciences, Inc. | Bioagent detection systems, devices, and methods |
WO2011008972A1 (en) | 2009-07-17 | 2011-01-20 | Ibis Biosciences, Inc. | Systems for bioagent identification |
US8950604B2 (en) | 2009-07-17 | 2015-02-10 | Ibis Biosciences, Inc. | Lift and mount apparatus |
US9416409B2 (en) | 2009-07-31 | 2016-08-16 | Ibis Biosciences, Inc. | Capture primers and capture sequence linked solid supports for molecular diagnostic tests |
WO2011047307A1 (en) | 2009-10-15 | 2011-04-21 | Ibis Biosciences, Inc. | Multiple displacement amplification |
ES2626411T3 (es) | 2010-03-10 | 2017-07-25 | Ibis Biosciences, Inc. | Producción de ácido nucleico circular monocatenario |
US9068017B2 (en) | 2010-04-08 | 2015-06-30 | Ibis Biosciences, Inc. | Compositions and methods for inhibiting terminal transferase activity |
EP2753629B1 (de) | 2011-09-06 | 2016-10-19 | Ibis Biosciences, Inc. | Verfahren für den nachweis von lyme-krankheit |
WO2013101935A1 (en) | 2011-12-27 | 2013-07-04 | Ibis Biosciences, Inc. | Bioagent detection oligonucleotides |
JP2013171343A (ja) | 2012-02-17 | 2013-09-02 | Toshiba Corp | ストレージデバイス |
EP2901129A4 (de) | 2012-09-26 | 2016-11-02 | Ibis Biosciences Inc | Tupferschnittstelle für eine mikrofluidische vorrichtung |
CN112752846A (zh) * | 2018-09-28 | 2021-05-04 | 学校法人庆应义塾 | 解析方法、分析方法以及微生物的识别方法 |
RU2765495C1 (ru) * | 2021-05-31 | 2022-01-31 | Федеральное казенное учреждение здравоохранения "Ростовский-на-Дону ордена Трудового Красного Знамени научно-исследовательский противочумный институт" Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека | Способ определения подвидов Francisella tularensis методом мультипраймерной ПЦР |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5849492A (en) * | 1994-02-28 | 1998-12-15 | Phylogenetix Laboratories, Inc. | Method for rapid identification of prokaryotic and eukaryotic organisms |
WO2002070664A2 (en) * | 2001-03-02 | 2002-09-12 | Isis Pharmaceuticals, Inc. | Method for rapid detection and identification of bioagents |
Family Cites Families (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US6503709B1 (en) * | 1997-07-03 | 2003-01-07 | Id Biomedical Corporation | Methods for rapidly detecting methicillin resistant staphylococci |
EP1035234A4 (de) * | 1997-08-26 | 2003-05-28 | Sumitomo Mitsubishi Silicon | Hochqualitativer silikoneinkristall und verfahren zu dessen herstellung |
US6613509B1 (en) * | 1999-03-22 | 2003-09-02 | Regents Of The University Of California | Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry |
AU2001288393A1 (en) * | 2000-08-25 | 2002-03-04 | Illumina, Inc. | Probes and decoder oligonucleotides |
US20040121311A1 (en) * | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents in livestock |
JP2003061665A (ja) * | 2001-08-21 | 2003-03-04 | Yakult Bio-Science Foundation | 芽胞形成菌の検出方法 |
-
2005
- 2005-02-18 WO PCT/US2005/006133 patent/WO2006071241A2/en active Application Filing
- 2005-02-18 EP EP05856582A patent/EP1725686A4/de not_active Withdrawn
- 2005-02-18 AU AU2005322640A patent/AU2005322640B2/en not_active Ceased
- 2005-02-18 WO PCT/US2005/005356 patent/WO2005098047A2/en active Application Filing
- 2005-02-18 JP JP2006554339A patent/JP2007525978A/ja active Pending
- 2005-02-18 CA CA2560521A patent/CA2560521C/en not_active Expired - Fee Related
-
2008
- 2008-12-12 AU AU2008255266A patent/AU2008255266B2/en not_active Ceased
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5849492A (en) * | 1994-02-28 | 1998-12-15 | Phylogenetix Laboratories, Inc. | Method for rapid identification of prokaryotic and eukaryotic organisms |
WO2002070664A2 (en) * | 2001-03-02 | 2002-09-12 | Isis Pharmaceuticals, Inc. | Method for rapid detection and identification of bioagents |
Non-Patent Citations (12)
Title |
---|
ARNAL C ET AL: "Quantification of Hepatitis A virus in shellfish by competitive reverse transcription PCR with coextraction of standard RNA", APPLIED AND ENVIRONMENTAL MICROBIOLOGY, AMERICAN SOCIETY FOR MICROBIOLOGY, US, vol. 65, no. 1, 1 January 1999 (1999-01-01), pages 322 - 326, XP003011821, ISSN: 0099-2240 * |
BRIGHTWELL G ET AL: "Development of internal controls for PCR detection of Bacillus anthracis", MOLECULAR AND CELLULAR PROBES, ACADEMIC PRESS, LONDON, GB, vol. 12, no. 6, 1 December 1998 (1998-12-01), pages 367 - 377, XP004450119, ISSN: 0890-8508 * |
DING CHUNMING ET AL: "A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF USA, NATIONAL ACADEMY OF SCIENCE, WASHINGTON, DC.; US, vol. 100, no. 6, 18 March 2003 (2003-03-18), pages 3059 - 3064, XP002306878, ISSN: 0027-8424 * |
HAFF L A ET AL: "MULTIPLEX GENOTYPING OF PCR PRODUCTS WITH MASS TAG-LABELED PRIMERS", NUCLEIC ACIDS RESEARCH, OXFORD UNIVERSITY PRESS, SURREY, GB, vol. 25, no. 18, 1 January 1997 (1997-01-01), pages 3749 - 3750, XP002975048, ISSN: 0305-1048 * |
HASSAN A A ET AL: "Inter- and Intraspecies Variations of the 16S-23S rDNA Intergenic Spacer Region of Various Streptococcal Species", SYSTEMATIC AND APPLIED MICROBIOLOGY, XX, XX, vol. 26, no. 1, 1 January 2003 (2003-01-01), pages 97 - 103, XP004957559, ISSN: 0723-2020 * |
HURST G B ET AL: "Detection of bacterial DNA polymerase chain reaction products by matrix assisted laser desorption/ionization mass spectrometry", RAPID COMMUNICATIONS IN MASS SPECTROMETRY, HEYDEN, LONDON, GB, vol. 10, 1 January 1996 (1996-01-01), pages 377 - 382, XP002955968, ISSN: 0951-4198 * |
JURINKE C ET AL: "MALDI-TOF MASS SPECTROMETRY. A VERSATILE TOOL FOR HIGH-PERFORMANCE DNA ANALYSIS", MOLECULAR BIOTECHNOLOGY, HUMANA PRESS, INC, US, vol. 26, no. 2, 1 February 2004 (2004-02-01), pages 147 - 163, XP009051260, ISSN: 1073-6085 * |
LEVINE S M ET AL: "PCR-based detection of Bacillus anthracis in formalin-fixed tissue from a patient receiving ciprofloxacin", JOURNAL OF CLINICAL MICROBIOLOGY 20021101 US, vol. 40, no. 11, 1 November 2002 (2002-11-01), pages 4360 - 4362, XP002499261, ISSN: 0095-1137 * |
MAY ALEX C W: "Percent sequence identity: The need to be explicit", STRUCTURE (CAMBRIDGE), vol. 12, no. 5, May 2004 (2004-05-01), pages 737 - 738, XP002499260, ISSN: 0969-2126 * |
MUDDIMAN D C ET AL: "Characterization of PCR Products from Bacilli Using Electrospray Ionization FTICR Mass Spectrometry", ANALYTICAL CHEMISTRY, AMERICAN CHEMICAL SOCIETY. COLUMBUS, US, vol. 68, no. 21, 1 November 1996 (1996-11-01), pages 3705 - 3712, XP002980423, ISSN: 0003-2700 * |
RAMISSE V ET AL: "Identification and characterization of Bacillus anthracis by multiplex PCR analysis of sequences on plasmids pXO1 and pXO2 and chromosomal DNA", FEMS MICROBIOLOGY LETTERS, AMSTERDAM, NL, vol. 145, no. 1, 15 November 1996 (1996-11-15), pages 9 - 16, XP002226327, ISSN: 0378-1097 * |
VAN BAAR B L M: "Characterisation of bacteria by matrix-assisted laser desorption/ionisation and electrospray mass spectrometry", FEMS MICROBIOLOGY REVIEWS, ELSEVIER, AMSTERDAM, NL, vol. 24, 1 January 2000 (2000-01-01), pages 195 - 219, XP002980425, ISSN: 0168-6445 * |
Also Published As
Publication number | Publication date |
---|---|
AU2005322640A1 (en) | 2006-07-06 |
WO2006071241A2 (en) | 2006-07-06 |
CA2560521A1 (en) | 2006-07-06 |
AU2008255266B2 (en) | 2011-07-14 |
CA2560521C (en) | 2012-01-03 |
WO2006071241A3 (en) | 2007-09-13 |
AU2008255266A1 (en) | 2009-01-08 |
AU2005322640B2 (en) | 2008-09-18 |
WO2005098047A2 (en) | 2005-10-20 |
JP2007525978A (ja) | 2007-09-13 |
EP1725686A2 (de) | 2006-11-29 |
WO2005098047A3 (en) | 2007-10-04 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
EP1725686A4 (de) | Zusammensetzung zur verwendung bei der identifizierung von bakterien | |
EP1940437A4 (de) | Zusammensetzungen und verfahren zur behandlung von bakterien | |
EP2066785A4 (de) | Bakterienkulturen und zusammensetzungen mit bakterienkulturen | |
SI1962873T1 (sl) | Farmacevtski sestavki, ki vsebujejo bakterijo za zmanjšanje oksalata | |
EP1841558A4 (de) | Verfahren und zusammensetzung für elektrochemisches-mechanisches polieren | |
EP1758892A4 (de) | Verbindungen und zusammensetzungen als proteinkinaseinhibitoren | |
EP1713806A4 (de) | Verbindungen und zusammensetzungen als proteinkinaseinhibitoren | |
EP1895838A4 (de) | Zusammensetzungen und verfahren | |
EP1945791A4 (de) | Expression löslicher faktor-viii-proteine in bakterien | |
IL225911A (en) | Citrulline preparations for use in the treatment of asthma | |
IL191072A0 (en) | Therapeutic compositions and methods | |
GB0619096D0 (en) | Polishing composition and polishing method | |
ZA200700809B (en) | Corrosion-inhibiting compositions and use thereof | |
ZA200707903B (en) | Colourant compositions and their use | |
EP2066174A4 (de) | Zusammensetzungen mit alpha-1-antitrypsin und verwendungsverfahren dafür | |
EP1807500A4 (de) | Verfahren und zusammensetzungen zur klärung von getränken | |
GB0427145D0 (en) | Compositions for use in surgery | |
SG131098A1 (en) | Polishing composition and polishing method | |
EP1858841A4 (de) | W-alkoxyperoxycarbonsäure enthaltende zusammensetzung zur sterilisation | |
GB0417359D0 (en) | Improvements in compositions | |
EP1845135A4 (de) | Oxokohlenstoff enthaltende zusammensetzung und verwendung davon | |
GB0520930D0 (en) | Composition and method of use | |
GB0412584D0 (en) | Composition of matter | |
EP1858509A4 (de) | Neue cathepsin-c-hemmer und ihre verwendung | |
GB0501348D0 (en) | Compositions and methods |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PUAI | Public reference made under article 153(3) epc to a published international application that has entered the european phase |
Free format text: ORIGINAL CODE: 0009012 |
|
17P | Request for examination filed |
Effective date: 20060918 |
|
AK | Designated contracting states |
Kind code of ref document: A2 Designated state(s): AT BE BG CH CY CZ DE DK EE ES FI FR GB GR HU IE IS IT LI LT LU MC NL PL PT RO SE SI SK TR |
|
AX | Request for extension of the european patent |
Extension state: AL BA HR LV MK YU |
|
DAX | Request for extension of the european patent (deleted) | ||
PUAK | Availability of information related to the publication of the international search report |
Free format text: ORIGINAL CODE: 0009015 |
|
RIC1 | Information provided on ipc code assigned before grant |
Ipc: C07H 21/02 20060101ALI20071031BHEP Ipc: C12Q 1/68 20060101AFI20071031BHEP |
|
A4 | Supplementary search report drawn up and despatched |
Effective date: 20081110 |
|
RAP1 | Party data changed (applicant data changed or rights of an application transferred) |
Owner name: IBIS BIOSCIENCES, INC. |
|
17Q | First examination report despatched |
Effective date: 20090429 |
|
RAP1 | Party data changed (applicant data changed or rights of an application transferred) |
Owner name: IBIS BIOSCIENCES, INC. |
|
STAA | Information on the status of an ep patent application or granted ep patent |
Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN |
|
18D | Application deemed to be withdrawn |
Effective date: 20131003 |