CA2560521C - Compositions for use in identification of bacteria - Google Patents
Compositions for use in identification of bacteria Download PDFInfo
- Publication number
- CA2560521C CA2560521C CA2560521A CA2560521A CA2560521C CA 2560521 C CA2560521 C CA 2560521C CA 2560521 A CA2560521 A CA 2560521A CA 2560521 A CA2560521 A CA 2560521A CA 2560521 C CA2560521 C CA 2560521C
- Authority
- CA
- Canada
- Prior art keywords
- data
- primer
- triphosphate
- primers
- seq
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Fee Related
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Analytical Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (11)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US54542504P | 2004-02-18 | 2004-02-18 | |
US60/545,425 | 2004-02-18 | ||
US55975404P | 2004-04-05 | 2004-04-05 | |
US60/559,754 | 2004-04-05 | ||
US63286204P | 2004-12-03 | 2004-12-03 | |
US60/632,862 | 2004-12-03 | ||
US63906804P | 2004-12-22 | 2004-12-22 | |
US60/639,068 | 2004-12-22 | ||
US64818805P | 2005-01-28 | 2005-01-28 | |
US60/648,188 | 2005-01-28 | ||
PCT/US2005/006133 WO2006071241A2 (en) | 2004-02-18 | 2005-02-18 | Compositions for use in identification of bacteria |
Publications (2)
Publication Number | Publication Date |
---|---|
CA2560521A1 CA2560521A1 (en) | 2006-07-06 |
CA2560521C true CA2560521C (en) | 2012-01-03 |
Family
ID=35125687
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CA2560521A Expired - Fee Related CA2560521C (en) | 2004-02-18 | 2005-02-18 | Compositions for use in identification of bacteria |
Country Status (5)
Country | Link |
---|---|
EP (1) | EP1725686A4 (de) |
JP (1) | JP2007525978A (de) |
AU (2) | AU2005322640B2 (de) |
CA (1) | CA2560521C (de) |
WO (2) | WO2006071241A2 (de) |
Families Citing this family (47)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2009155061A2 (en) * | 2008-05-30 | 2009-12-23 | Ibis Biosciences, Inc. | Compositions for use in identification of strains of e. coli o157:h7 |
US7666588B2 (en) | 2001-03-02 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy |
US20040121335A1 (en) | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections |
US20030027135A1 (en) | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
US7226739B2 (en) | 2001-03-02 | 2007-06-05 | Isis Pharmaceuticals, Inc | Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations |
CA2348042A1 (en) | 2001-06-04 | 2002-12-04 | Ann Huletsky | Sequences for detection and identification of methicillin-resistant staphylococcus aureus |
US7217510B2 (en) | 2001-06-26 | 2007-05-15 | Isis Pharmaceuticals, Inc. | Methods for providing bacterial bioagent characterizing information |
US8073627B2 (en) | 2001-06-26 | 2011-12-06 | Ibis Biosciences, Inc. | System for indentification of pathogens |
EP1578399A4 (de) | 2002-12-06 | 2007-11-28 | Isis Pharmaceuticals Inc | Verfahren für die rasche identifikation von pathogenen bei tier und mensch |
US8057993B2 (en) | 2003-04-26 | 2011-11-15 | Ibis Biosciences, Inc. | Methods for identification of coronaviruses |
US8158354B2 (en) | 2003-05-13 | 2012-04-17 | Ibis Biosciences, Inc. | Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US7964343B2 (en) | 2003-05-13 | 2011-06-21 | Ibis Biosciences, Inc. | Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture |
US8288523B2 (en) | 2003-09-11 | 2012-10-16 | Ibis Biosciences, Inc. | Compositions for use in identification of bacteria |
US8546082B2 (en) | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US7666592B2 (en) | 2004-02-18 | 2010-02-23 | Ibis Biosciences, Inc. | Methods for concurrent identification and quantification of an unknown bioagent |
WO2005117270A2 (en) | 2004-05-24 | 2005-12-08 | Isis Pharmaceuticals, Inc. | Mass spectrometry with selective ion filtration by digital thresholding |
US20050266411A1 (en) | 2004-05-25 | 2005-12-01 | Hofstadler Steven A | Methods for rapid forensic analysis of mitochondrial DNA |
US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
WO2006135400A2 (en) | 2004-08-24 | 2006-12-21 | Isis Pharmaceuticals, Inc. | Methods for rapid identification of recombinant organisms |
EP1869180B1 (de) | 2005-03-03 | 2013-02-20 | Ibis Biosciences, Inc. | Zusammensetzung zur Verwendung bei der Identifikation von Polyomaviren |
US8084207B2 (en) | 2005-03-03 | 2011-12-27 | Ibis Bioscience, Inc. | Compositions for use in identification of papillomavirus |
US8026084B2 (en) | 2005-07-21 | 2011-09-27 | Ibis Biosciences, Inc. | Methods for rapid identification and quantitation of nucleic acid variants |
US11834720B2 (en) | 2005-10-11 | 2023-12-05 | Geneohm Sciences, Inc. | Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx |
US20070134700A1 (en) * | 2005-11-21 | 2007-06-14 | Biosigma S.A. | Method and array for detection and identification of microorangisms present in a sample using the genomic regions coding for different tRNA synthetases |
US9149473B2 (en) | 2006-09-14 | 2015-10-06 | Ibis Biosciences, Inc. | Targeted whole genome amplification method for identification of pathogens |
WO2008104002A2 (en) | 2007-02-23 | 2008-08-28 | Ibis Biosciences, Inc. | Methods for rapid forensic dna analysis |
WO2008151023A2 (en) | 2007-06-01 | 2008-12-11 | Ibis Biosciences, Inc. | Methods and compositions for multiple displacement amplification of nucleic acids |
EP1997905A1 (de) * | 2007-06-01 | 2008-12-03 | Friesland Brands B.V. | Amplifikation von Nukleinsäure |
WO2010033627A2 (en) | 2008-09-16 | 2010-03-25 | Ibis Biosciences, Inc. | Sample processing units, systems, and related methods |
US8550694B2 (en) | 2008-09-16 | 2013-10-08 | Ibis Biosciences, Inc. | Mixing cartridges, mixing stations, and related kits, systems, and methods |
US8534447B2 (en) | 2008-09-16 | 2013-09-17 | Ibis Biosciences, Inc. | Microplate handling systems and related computer program products and methods |
WO2010039848A2 (en) * | 2008-10-03 | 2010-04-08 | Ibis Biosciences, Inc. | Compositions for use in identification of streptococcus pneumoniae |
WO2010093943A1 (en) | 2009-02-12 | 2010-08-19 | Ibis Biosciences, Inc. | Ionization probe assemblies |
WO2010114842A1 (en) | 2009-03-30 | 2010-10-07 | Ibis Biosciences, Inc. | Bioagent detection systems, devices, and methods |
WO2011008971A1 (en) | 2009-07-17 | 2011-01-20 | Ibis Biosciences, Inc. | Lift and mount apparatus |
US9194877B2 (en) | 2009-07-17 | 2015-11-24 | Ibis Biosciences, Inc. | Systems for bioagent indentification |
US9416409B2 (en) | 2009-07-31 | 2016-08-16 | Ibis Biosciences, Inc. | Capture primers and capture sequence linked solid supports for molecular diagnostic tests |
EP2488656B1 (de) | 2009-10-15 | 2015-06-03 | Ibis Biosciences, Inc. | Mehrfache verschiebungsverstärkung |
US20110224106A1 (en) | 2010-03-10 | 2011-09-15 | Ibis Biosciences, Inc. | Production Of Single-Stranded Circular Nucleic Acid |
US9068017B2 (en) | 2010-04-08 | 2015-06-30 | Ibis Biosciences, Inc. | Compositions and methods for inhibiting terminal transferase activity |
EP3170831A1 (de) | 2011-09-06 | 2017-05-24 | Ibis Biosciences, Inc. | Probenvorbereitungsverfahren |
US9970061B2 (en) | 2011-12-27 | 2018-05-15 | Ibis Biosciences, Inc. | Bioagent detection oligonucleotides |
JP2013171343A (ja) | 2012-02-17 | 2013-09-02 | Toshiba Corp | ストレージデバイス |
CN104937390B (zh) | 2012-09-26 | 2018-09-21 | 艾比斯生物科学公司 | 用于微流体装置的拭子接口 |
US20220034900A1 (en) * | 2018-09-28 | 2022-02-03 | Keio University | Analysis method, analytical method and microorganism identification method |
RU2765495C1 (ru) * | 2021-05-31 | 2022-01-31 | Федеральное казенное учреждение здравоохранения "Ростовский-на-Дону ордена Трудового Красного Знамени научно-исследовательский противочумный институт" Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека | Способ определения подвидов Francisella tularensis методом мультипраймерной ПЦР |
Family Cites Families (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5849492A (en) * | 1994-02-28 | 1998-12-15 | Phylogenetix Laboratories, Inc. | Method for rapid identification of prokaryotic and eukaryotic organisms |
US6503709B1 (en) * | 1997-07-03 | 2003-01-07 | Id Biomedical Corporation | Methods for rapidly detecting methicillin resistant staphylococci |
KR100395181B1 (ko) * | 1997-08-26 | 2003-08-21 | 미츠비시 스미토모 실리콘 주식회사 | 고품질 실리콘 단결정 및 그 제조방법 |
US6613509B1 (en) * | 1999-03-22 | 2003-09-02 | Regents Of The University Of California | Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry |
AU2001288393A1 (en) * | 2000-08-25 | 2002-03-04 | Illumina, Inc. | Probes and decoder oligonucleotides |
US20040121335A1 (en) * | 2002-12-06 | 2004-06-24 | Ecker David J. | Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections |
US20030027135A1 (en) * | 2001-03-02 | 2003-02-06 | Ecker David J. | Method for rapid detection and identification of bioagents |
JP2003061665A (ja) * | 2001-08-21 | 2003-03-04 | Yakult Bio-Science Foundation | 芽胞形成菌の検出方法 |
-
2005
- 2005-02-18 CA CA2560521A patent/CA2560521C/en not_active Expired - Fee Related
- 2005-02-18 WO PCT/US2005/006133 patent/WO2006071241A2/en active Application Filing
- 2005-02-18 AU AU2005322640A patent/AU2005322640B2/en not_active Ceased
- 2005-02-18 WO PCT/US2005/005356 patent/WO2005098047A2/en active Application Filing
- 2005-02-18 JP JP2006554339A patent/JP2007525978A/ja active Pending
- 2005-02-18 EP EP05856582A patent/EP1725686A4/de not_active Withdrawn
-
2008
- 2008-12-12 AU AU2008255266A patent/AU2008255266B2/en not_active Ceased
Also Published As
Publication number | Publication date |
---|---|
JP2007525978A (ja) | 2007-09-13 |
AU2008255266A1 (en) | 2009-01-08 |
CA2560521A1 (en) | 2006-07-06 |
WO2006071241A3 (en) | 2007-09-13 |
AU2005322640B2 (en) | 2008-09-18 |
WO2006071241A2 (en) | 2006-07-06 |
AU2008255266B2 (en) | 2011-07-14 |
WO2005098047A2 (en) | 2005-10-20 |
WO2005098047A3 (en) | 2007-10-04 |
EP1725686A2 (de) | 2006-11-29 |
AU2005322640A1 (en) | 2006-07-06 |
EP1725686A4 (de) | 2008-12-10 |
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Legal Events
Date | Code | Title | Description |
---|---|---|---|
EEER | Examination request | ||
MKLA | Lapsed |
Effective date: 20150218 |