CA2560521C - Compositions for use in identification of bacteria - Google Patents

Compositions for use in identification of bacteria Download PDF

Info

Publication number
CA2560521C
CA2560521C CA2560521A CA2560521A CA2560521C CA 2560521 C CA2560521 C CA 2560521C CA 2560521 A CA2560521 A CA 2560521A CA 2560521 A CA2560521 A CA 2560521A CA 2560521 C CA2560521 C CA 2560521C
Authority
CA
Canada
Prior art keywords
data
primer
triphosphate
primers
seq
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Fee Related
Application number
CA2560521A
Other languages
English (en)
French (fr)
Other versions
CA2560521A1 (en
Inventor
Rangarajan Sampath
Thomas A. Hall
David J. Ecker
Mark W. Eshoo
Christian Massire
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ibis Biosciences Inc
Original Assignee
Ibis Biosciences Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ibis Biosciences Inc filed Critical Ibis Biosciences Inc
Publication of CA2560521A1 publication Critical patent/CA2560521A1/en
Application granted granted Critical
Publication of CA2560521C publication Critical patent/CA2560521C/en
Expired - Fee Related legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2560521A 2004-02-18 2005-02-18 Compositions for use in identification of bacteria Expired - Fee Related CA2560521C (en)

Applications Claiming Priority (11)

Application Number Priority Date Filing Date Title
US54542504P 2004-02-18 2004-02-18
US60/545,425 2004-02-18
US55975404P 2004-04-05 2004-04-05
US60/559,754 2004-04-05
US63286204P 2004-12-03 2004-12-03
US60/632,862 2004-12-03
US63906804P 2004-12-22 2004-12-22
US60/639,068 2004-12-22
US64818805P 2005-01-28 2005-01-28
US60/648,188 2005-01-28
PCT/US2005/006133 WO2006071241A2 (en) 2004-02-18 2005-02-18 Compositions for use in identification of bacteria

Publications (2)

Publication Number Publication Date
CA2560521A1 CA2560521A1 (en) 2006-07-06
CA2560521C true CA2560521C (en) 2012-01-03

Family

ID=35125687

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2560521A Expired - Fee Related CA2560521C (en) 2004-02-18 2005-02-18 Compositions for use in identification of bacteria

Country Status (5)

Country Link
EP (1) EP1725686A4 (de)
JP (1) JP2007525978A (de)
AU (2) AU2005322640B2 (de)
CA (1) CA2560521C (de)
WO (2) WO2006071241A2 (de)

Families Citing this family (47)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2009155061A2 (en) * 2008-05-30 2009-12-23 Ibis Biosciences, Inc. Compositions for use in identification of strains of e. coli o157:h7
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US20040121335A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
CA2348042A1 (en) 2001-06-04 2002-12-04 Ann Huletsky Sequences for detection and identification of methicillin-resistant staphylococcus aureus
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
EP1578399A4 (de) 2002-12-06 2007-11-28 Isis Pharmaceuticals Inc Verfahren für die rasche identifikation von pathogenen bei tier und mensch
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8288523B2 (en) 2003-09-11 2012-10-16 Ibis Biosciences, Inc. Compositions for use in identification of bacteria
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
WO2005117270A2 (en) 2004-05-24 2005-12-08 Isis Pharmaceuticals, Inc. Mass spectrometry with selective ion filtration by digital thresholding
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
WO2006135400A2 (en) 2004-08-24 2006-12-21 Isis Pharmaceuticals, Inc. Methods for rapid identification of recombinant organisms
EP1869180B1 (de) 2005-03-03 2013-02-20 Ibis Biosciences, Inc. Zusammensetzung zur Verwendung bei der Identifikation von Polyomaviren
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
US8026084B2 (en) 2005-07-21 2011-09-27 Ibis Biosciences, Inc. Methods for rapid identification and quantitation of nucleic acid variants
US11834720B2 (en) 2005-10-11 2023-12-05 Geneohm Sciences, Inc. Sequences for detection and identification of methicillin-resistant Staphylococcus aureus (MRSA) of MREJ types xi to xx
US20070134700A1 (en) * 2005-11-21 2007-06-14 Biosigma S.A. Method and array for detection and identification of microorangisms present in a sample using the genomic regions coding for different tRNA synthetases
US9149473B2 (en) 2006-09-14 2015-10-06 Ibis Biosciences, Inc. Targeted whole genome amplification method for identification of pathogens
WO2008104002A2 (en) 2007-02-23 2008-08-28 Ibis Biosciences, Inc. Methods for rapid forensic dna analysis
WO2008151023A2 (en) 2007-06-01 2008-12-11 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
EP1997905A1 (de) * 2007-06-01 2008-12-03 Friesland Brands B.V. Amplifikation von Nukleinsäure
WO2010033627A2 (en) 2008-09-16 2010-03-25 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
US8550694B2 (en) 2008-09-16 2013-10-08 Ibis Biosciences, Inc. Mixing cartridges, mixing stations, and related kits, systems, and methods
US8534447B2 (en) 2008-09-16 2013-09-17 Ibis Biosciences, Inc. Microplate handling systems and related computer program products and methods
WO2010039848A2 (en) * 2008-10-03 2010-04-08 Ibis Biosciences, Inc. Compositions for use in identification of streptococcus pneumoniae
WO2010093943A1 (en) 2009-02-12 2010-08-19 Ibis Biosciences, Inc. Ionization probe assemblies
WO2010114842A1 (en) 2009-03-30 2010-10-07 Ibis Biosciences, Inc. Bioagent detection systems, devices, and methods
WO2011008971A1 (en) 2009-07-17 2011-01-20 Ibis Biosciences, Inc. Lift and mount apparatus
US9194877B2 (en) 2009-07-17 2015-11-24 Ibis Biosciences, Inc. Systems for bioagent indentification
US9416409B2 (en) 2009-07-31 2016-08-16 Ibis Biosciences, Inc. Capture primers and capture sequence linked solid supports for molecular diagnostic tests
EP2488656B1 (de) 2009-10-15 2015-06-03 Ibis Biosciences, Inc. Mehrfache verschiebungsverstärkung
US20110224106A1 (en) 2010-03-10 2011-09-15 Ibis Biosciences, Inc. Production Of Single-Stranded Circular Nucleic Acid
US9068017B2 (en) 2010-04-08 2015-06-30 Ibis Biosciences, Inc. Compositions and methods for inhibiting terminal transferase activity
EP3170831A1 (de) 2011-09-06 2017-05-24 Ibis Biosciences, Inc. Probenvorbereitungsverfahren
US9970061B2 (en) 2011-12-27 2018-05-15 Ibis Biosciences, Inc. Bioagent detection oligonucleotides
JP2013171343A (ja) 2012-02-17 2013-09-02 Toshiba Corp ストレージデバイス
CN104937390B (zh) 2012-09-26 2018-09-21 艾比斯生物科学公司 用于微流体装置的拭子接口
US20220034900A1 (en) * 2018-09-28 2022-02-03 Keio University Analysis method, analytical method and microorganism identification method
RU2765495C1 (ru) * 2021-05-31 2022-01-31 Федеральное казенное учреждение здравоохранения "Ростовский-на-Дону ордена Трудового Красного Знамени научно-исследовательский противочумный институт" Федеральной службы по надзору в сфере защиты прав потребителей и благополучия человека Способ определения подвидов Francisella tularensis методом мультипраймерной ПЦР

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5849492A (en) * 1994-02-28 1998-12-15 Phylogenetix Laboratories, Inc. Method for rapid identification of prokaryotic and eukaryotic organisms
US6503709B1 (en) * 1997-07-03 2003-01-07 Id Biomedical Corporation Methods for rapidly detecting methicillin resistant staphylococci
KR100395181B1 (ko) * 1997-08-26 2003-08-21 미츠비시 스미토모 실리콘 주식회사 고품질 실리콘 단결정 및 그 제조방법
US6613509B1 (en) * 1999-03-22 2003-09-02 Regents Of The University Of California Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry
AU2001288393A1 (en) * 2000-08-25 2002-03-04 Illumina, Inc. Probes and decoder oligonucleotides
US20040121335A1 (en) * 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents associated with host versus graft and graft versus host rejections
US20030027135A1 (en) * 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
JP2003061665A (ja) * 2001-08-21 2003-03-04 Yakult Bio-Science Foundation 芽胞形成菌の検出方法

Also Published As

Publication number Publication date
JP2007525978A (ja) 2007-09-13
AU2008255266A1 (en) 2009-01-08
CA2560521A1 (en) 2006-07-06
WO2006071241A3 (en) 2007-09-13
AU2005322640B2 (en) 2008-09-18
WO2006071241A2 (en) 2006-07-06
AU2008255266B2 (en) 2011-07-14
WO2005098047A2 (en) 2005-10-20
WO2005098047A3 (en) 2007-10-04
EP1725686A2 (de) 2006-11-29
AU2005322640A1 (en) 2006-07-06
EP1725686A4 (de) 2008-12-10

Similar Documents

Publication Publication Date Title
CA2560521C (en) Compositions for use in identification of bacteria
US8013142B2 (en) Compositions for use in identification of bacteria
EP1882045B1 (de) ZUSAMMENSETZUNG ZUR IDENTIFIZIERUNG VON Staphylococcus aureus
US8097416B2 (en) Methods for identification of sepsis-causing bacteria
US8546082B2 (en) Methods for identification of sepsis-causing bacteria
US20080138808A1 (en) Methods for identification of sepsis-causing bacteria
US20100204266A1 (en) Compositions for use in identification of mixed populations of bioagents
US20080146455A1 (en) Methods for identification of sepsis-causing bacteria
EP2179041A2 (de) Zusammensetzungen und verfahren zur identifikation der eigenschaften von unterarten von mycobacterium tuberculosis
US20110105531A1 (en) Compositions and methods for identification of subspecies characteristics of mycobacterium tuberculosis
US20120171692A1 (en) Composition For Use In Identification Of Bacteria
US20110256541A1 (en) Compositions for use in identification of bacteria
AU2013267065B2 (en) Methods for rapid identification of pathogens in humans and animals

Legal Events

Date Code Title Description
EEER Examination request
MKLA Lapsed

Effective date: 20150218