EP1179368B1 - Procédé, appareil et programme d'ordinateur pour fabriquer un arrangement de composés chimiques - Google Patents

Procédé, appareil et programme d'ordinateur pour fabriquer un arrangement de composés chimiques Download PDF

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EP1179368B1
EP1179368B1 EP01306532A EP01306532A EP1179368B1 EP 1179368 B1 EP1179368 B1 EP 1179368B1 EP 01306532 A EP01306532 A EP 01306532A EP 01306532 A EP01306532 A EP 01306532A EP 1179368 B1 EP1179368 B1 EP 1179368B1
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group
dispensers
dispenser
drop
series
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EP1179368A2 (fr
EP1179368A3 (fr
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Peter G. Webb
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Agilent Technologies Inc
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    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J19/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J19/0046Sequential or parallel reactions, e.g. for the synthesis of polypeptides or polynucleotides; Apparatus and devices for combinatorial chemistry or for making molecular arrays
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00277Apparatus
    • B01J2219/00351Means for dispensing and evacuation of reagents
    • B01J2219/00378Piezo-electric or ink jet dispensers
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00277Apparatus
    • B01J2219/00457Dispensing or evacuation of the solid phase support
    • B01J2219/00475Sheets
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00277Apparatus
    • B01J2219/00497Features relating to the solid phase supports
    • B01J2219/00527Sheets
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/00585Parallel processes
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/0059Sequential processes
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
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    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/00596Solid-phase processes
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
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    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/00603Making arrays on substantially continuous surfaces
    • B01J2219/00605Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
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    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/00603Making arrays on substantially continuous surfaces
    • B01J2219/00605Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/0061The surface being organic
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/00603Making arrays on substantially continuous surfaces
    • B01J2219/00605Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/00623Immobilisation or binding
    • B01J2219/00626Covalent
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/00603Making arrays on substantially continuous surfaces
    • B01J2219/00605Making arrays on substantially continuous surfaces the compounds being directly bound or immobilised to solid supports
    • B01J2219/00632Introduction of reactive groups to the surface
    • B01J2219/00637Introduction of reactive groups to the surface by coating it with another layer
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00583Features relative to the processes being carried out
    • B01J2219/00603Making arrays on substantially continuous surfaces
    • B01J2219/00659Two-dimensional arrays
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/0068Means for controlling the apparatus of the process
    • B01J2219/00686Automatic
    • B01J2219/00689Automatic using computers
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/0068Means for controlling the apparatus of the process
    • B01J2219/00693Means for quality control
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/0068Means for controlling the apparatus of the process
    • B01J2219/00695Synthesis control routines, e.g. using computer programs
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00718Type of compounds synthesised
    • B01J2219/0072Organic compounds
    • B01J2219/00722Nucleotides
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00718Type of compounds synthesised
    • B01J2219/0072Organic compounds
    • B01J2219/00725Peptides
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00Libraries per se, e.g. arrays, mixtures
    • C40B40/04Libraries containing only organic compounds
    • C40B40/06Libraries containing nucleotides or polynucleotides, or derivatives thereof
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00Libraries per se, e.g. arrays, mixtures
    • C40B40/04Libraries containing only organic compounds
    • C40B40/10Libraries containing peptides or polypeptides, or derivatives thereof
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B60/00Apparatus specially adapted for use in combinatorial chemistry or with libraries
    • C40B60/14Apparatus specially adapted for use in combinatorial chemistry or with libraries for creating libraries
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10TTECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00Chemistry: analytical and immunological testing
    • Y10T436/25Chemistry: analytical and immunological testing including sample preparation
    • Y10T436/2575Volumetric liquid transfer

Definitions

  • This invention relates to arrays, particularly polynucleotide arrays such as DNA arrays, which are useful in diagnostic, screening, gene expression analysis, and other applications.
  • Polynucleotide arrays (such as DNA or RNA arrays), are known and are used, for example, as diagnostic or screening tools. Such arrays include regions of usually different sequence polynucleotides arranged in a predetermined configuration on a substrate. These regions (sometimes referenced as “features") are positioned at respective locations ("addresses") on the substrate. The arrays, when exposed to a sample, will exhibit an observed binding pattern. This binding pattern can be detected upon interrogating the array. For example all polynucleotide targets (for example, DNA) in the sample can be labeled with a suitable label (such as a fluorescent compound), and the fluorescence pattern on the array accurately observed following exposure to the sample. Assuming that the different sequence polynucleotides were correctly deposited in accordance with the predetermined configuration, then the observed binding pattern will be indicative of the presence and/or concentration of one or more polynucleotide components of the sample.
  • a suitable label such as a fluorescent compound
  • Biopolymer arrays can be fabricated by depositing previously obtained biopolymers (such as from synthesis or natural sources) onto a substrate, or by in situ synthesis methods. Methods of depositing obtained biopolymers include dispensing droplets to a substrate from dispensers such as pin or capillaries (such as described in US 5,807,522) or such as pulse jets (such as a piezoelectric inkjet head, as described in PCT publications WO 95/25116 and WO 98/41531, and elsewhere). For in situ fabrication methods, multiple different reagent droplets are deposited from drop dispensers at a given target location in order to form the final feature (hence a probe of the feature is synthesized on the array stubstrate).
  • dispensers such as pin or capillaries (such as described in US 5,807,522) or such as pulse jets (such as a piezoelectric inkjet head, as described in PCT publications WO 95/25116 and WO 98/41531, and elsewhere).
  • pulse jets
  • the in situ fabrication methods include those described in US 5,449,754 for synthesizing peptide arrays, and described in WO 98/41531 and the references cited therein for polynucleotides.
  • the in situ method for fabricating a polynucleotide array typically follows, at each of the multiple different addresses at which features are to be formed, the same conventional iterative sequence used in forming polynucleotides from nucleoside reagents on a support by means of known chemistry. This iterative sequence is as follows: (a) coupling a selected nucleoside through a phosphite linkage to a functionalized support in the first iteration, or a nucleoside bound to the substrate (i.e.
  • nucleoside-modified substrate in subsequent iterations; (b) optionally, but preferably, blocking unreacted hydroxyl groups on the substrate bound nucleoside; (c) oxidizing the phosphite linkage of step (a) to form a phosphate linkage; and (d) removing the protecting group ("deprotection") from the now substrate bound nucleoside coupled in step (a), to generate a reactive site for the next cycle of these steps.
  • the functionalized support (in the first cycle) or deprotected coupled nucleoside (in subsequent cycles) provides a substrate bound moiety with a linking group for forming the phosphite linkage with a next nucleoside to be coupled in step (a).
  • Final deprotection of nucleoside bases can be accomplished using alkaline conditions such as ammonium hydroxide, in a known manner.
  • the present invention realizes that one or more of such drop dispensers may suffer from errors, such as failure to dispense a drop at all or failure to dispense in the correct location.
  • errors such as failure to dispense a drop at all or failure to dispense in the correct location.
  • non-error dispensers can be used to dispense droplets which would otherwise have been dispensed by an error dispenser.
  • this can involve multiple additional movements of the dispensers relative to the substrate which requires further time (and hence can decrease array quantity produced over a given time) and can lead to further errors.
  • US-A-5,958,342 discloses a device for precise production of arrays of microspots. On discovery of an error, an erroneous dispensing head is replaced by a substitute containing the same liquid medium.
  • Identification of an error in one of the dispensers may, for example, be based on data specifically identifying an error dispenser (such as operator input data), or upon data retrieved from a sensor which monitors dispensers for an error and provides corresponding data to the processor (in which case the processor can identify an error from the received data).
  • a second dispenser of a second group when a second dispenser of a second group is additionally in error, the first and second dispensers of each group are alternately moved along the selected path for that group while droplets are dispensed from non-error dispensers of the first and second groups in at least part of the pattern for the selected path for the respective groups.
  • This same procedure can be extended to the general case where multiple identified dispensers of different order (including first or second) in respective groups are in error. That is, the corresponding non-error dispensers of each group are alternately moved along the selected path for that group while droplets are dispensed from the non-errordispensers each at least in part of the pattern for the selected path for the corresponding group. In any event, typically the pattern for the selected path of each group would be completed.
  • an apparatus for fabricating a chemical array comprising:
  • a computer program product for use with an apparatus for fabricating a chemical array having:
  • the method may further provide for exposing the array to a sample, and interrogating the array following the exposure and optionally processing results of the interrogation. Such an interrogation or processing result may be forwarded to a remote location.
  • drops can be dispensed by non-error dispensers while maintaining a relatively simple pattern of movement of the drop dispenser system relative to a substrate. Further, re-loading of the head system with fluids to be dispensed, is not required by methods of the present invention in order to have a non-error dispenser dispense drops in place of an error dispenser.
  • a “biopolymer” is a polymer of one or more types of repeating units. Biopolymers are typically found in biological systems (although they may be made synthetically) and particularly include peptides or polynucleotides, as well as such compounds composed of or containing amino acid analogs or non-amino acid groups, or nucleotide analogs or non-nucleotide groups.
  • polynucleotides in which the conventional backbone has been replaced with a non-naturally occurring or synthetic backbone, and nucleic acids (or synthetic or naturally occurring analogs) in which one or more of the conventional bases has been replaced with a group (natural or synthetic) capable of participating in Watson-Crick type hydrogen bonding interactions.
  • Polynucleotides include single or multiple stranded configurations, where one or more of the strands may or may not be completely aligned with another.
  • nucleotide refers to a sub-unit of a nucleic acid and has a phosphate group, a 5 carbon sugar and a nitrogen containing base, as well as functional analogs (whether synthetic or naturally occurring) of such sub-units which in the polymer form (as a polynucleotide) can hybridize with naturally occurring polynucleotides in a sequence specific manner analogous to that of two naturally occurring polynucleotides.
  • a “biopolymer” includes DNA (including cDNA), RNA, oligonucleotides, and PNA and other polynucleotides as described in US 5,948,902 and references cited therein (all of which are incorporated herein by reference), regardless of the source.
  • An “oligonucleotide” generally refers to a nucleotide multimer of about 10 to 100 nucleotides in length, while a “polynucleotide” includes a nucleotide multimer having any number of nucleotides.
  • a “biomonomer” references a single unit, which can be linked with the same or other biomonomers to form a biopolymer (for example, a single amino acid or nucleotide with two linking groups one or both of which may have removable protecting groups).
  • a “peptide” is used to refer to an amino acid multimer of any length (for example, more than 10, 10 to 100, or more amino acid units),
  • a biomonomer fluid or biopolymer fluid reference a liquid containing either a biomonomer or biopolymer, respectively (typically in solution).
  • a “set” or “sub-set” of any item may contain only one of the item, or only two, or three, or any number of multiple items.
  • An array is "addressable” in that it has multiple regions of different moieties (for example, different polynucleotide sequences) such that a region (a "feature” or “spot” of the array) at a particular predetermined location (an “address") on the array will detect a particular target or class of targets (although a feature may incidentally detect non-targets of that feature).
  • Array features are typically, but need not be, separated by intervening spaces.
  • the "target” will be referenced as a moiety in a mobile phase (typically fluid), to be detected by probes ("target probes”) which are bound to the substrate at the various regions.
  • either of the “target” or “target probes” may be the one which is to be evaluated by the other (thus, either one could be an unknown mixture of polynucleotides to be evaluated by binding with the other).
  • An “array layout” refers collectively to one or more characteristics of the features, such as feature positioning, one or more feature dimensions, and some indication of a moiety at a given location. "Hybridizing” and “binding”, with respect to polynucleotides, are used interchangeably.
  • “Remote” information references transmitting the data representing that information as electrical signals over a suitable communication channel (for example, a private or public network).
  • “Forwarding" an item refers to any means of getting that item from one location to the next, whether by physically transporting that item or otherwise (where that is possible) and includes, at least in the case of data, physically transporting a medium carrying the data or communicating the data.
  • typically methods and apparatus of the present invention generate or use a contiguous planar substrate 10 carrying one or more arrays 12 disposed across a front surface 11a of substrate 10 and separated by inter-array areas 13.
  • a back side 11b of substrate 10 does not carry any arrays 12.
  • the arrays on substrate 10 can be designed for testing against any type of sample, whether a trial sample, reference sample, a combination of them, or a known mixture of polynucleotides (in which latter case the arrays may be composed of features carrying unknown sequences to be evaluated). While ten arrays 12 are shown in FIG.
  • substrates with particular numbers of arrays may use any number of desired arrays 12.
  • substrate 10 may be of any shape, and any apparatus used with it adapted accordingly.
  • any or all of arrays 12 may be the same or different from one another and each will contain multiple spots or features 16 of biopolymers in the form of polynucleotides.
  • a typical array may contain from more than ten, more than one hundred, more than one thousand or ten thousand features, or even more than from one hundred thousand features. All of the features 16 may be different, or some or all could be the same.
  • interfeature areas 17 will typically be present which do not carry any polynucleotide. It will be appreciated though, that the interfeature areas 17 could be of various sizes and configurations. It will also be appreciated that there need not be any space separating arrays 12 from one another.
  • Each feature carries a predetermined polynucleotide (which includes the possibility of mixtures of polynucleotides). As per usual, A, C, G, T represent the usual nucleotides. It will be understood that there may be a linker molecule (not shown) of any known types between the front surface 11a and the first nucleotide.
  • the array being formed in any case is a polymucleotide array formed by the deposition of previously obtained polynucleotides using pulse jet deposition units.
  • the applicability of the method to arrays of other polymers or chemical moieties generally, whether formed by multiple cycle in situ methods or deposition of previously obtained moieties, or using other types of dispensers, will be understood from these discussions.
  • FIG. 4 is a view from above looking down (using the orientation of FIG. 6) toward a head system 210 and substrate 10 (not shown in FIG. 4 for clarity) onto which an array is to be fabricated.
  • Head system 210 has two heads 210a and 210b.
  • each head 210a and 210b is illustrated with fifteen parallel rows and two columns (all parallel) of dispensers.
  • each head may in practice have many more rows and columns although the number of rows and columns have been kept low in FIGS. 4 and 5 for the purposes of clarity.
  • Each dispenser is illustrated by its drop dispensing outlet (the drop outlet orifice, for example, in a corresponding pulse jet) represented by a hollow circle in FIG. 4. Deposited droplets are represented by solid black circles. Since, as described below in connection with FIG. 6, heads 210a and 210b are both mounted to the same head retainer 208, all drop dispensers will be moved in unison by the transport system (see FIG. 6). These drop dispensers are identified as groups A, B, C, D, and E in FIG. 4, each group having respective three rows of dispensers x, y, and z, in four columns 1, 2, 3, and 4. It will be understood though, that it is possible that each group may have only one column of dispensers (that is, each group may have only three dispensers).
  • any particular drop dispenser will be referenced by its group number, followed by row and column number.
  • drop dispenser A y 1 refers to the dispenser in group A
  • drop dispenser B y 2 refers to the drop dispenser in group B, row y, column 2.
  • Each group A, B, C, D, E has four series of dispensers, each series being the three dispensers in a column. Dispensers of each series communicate with a common reservoir for that series and thus in operation dispensers of a same series are loaded with the same fluid, as described below.
  • row y in each group will be regarded as a first row, with row x being a second row in each group (and row z being a third row).
  • designation of rows as “first”, “second”, “third”, and the like is merely an arbitrary naming for identification purposes only and does not imply that the rows are in the physical sequence of first, second and third one after the other. Nor does such naming imply that during operation of the method the "first” row should dispense drops first, followed by the "second” row. Instead, the order of dispensing from the rows may be in any convenient order with, for example, the "second” row dispensing drops before the "first” row.
  • rows implies that when a given named row (or dispenser within a row) of one group is aligned for movement along a selected path A s through E s for that group, the same named row (or dispenser) of the other groups are simultaneously aligned for movement along the respective selected paths for their groups. For example, when the second row of group A is moved along the selected path A s for group A, the second row of groups B, C, D, and E will be simultaneously moved along the selected paths of their respective groups. Such similarly named rows (or dispensers) are therefore corresponding rows (or dispensers) of different groups. Dispensing of all droplets in the required pattern along all selected paths will result in at least a portion of the target array. Similarly, reference to a group as the "first”, "second”, or the like, is an arbitrary designation only, and does not imply that the groups are in any sequence spatially with respect to one another.
  • head system 210 has initially been positioned so that the first rows A y , B y , C y , D y , E y , are aligned with respective selected paths A s through E s (that is, they will be moved along paths A s through E s upon activation of the transport system).
  • processor 140 has identified an error in a first row y of the first group A while no errors have been identified in any of the dispensers of the secondrows. Specifically dispenser A y 1 does not dispense a droplet when required to do so.
  • the result would be an array shown in FIG. 4A with two sets of deposited drops (each having columns 1-4) and in which no drops were deposited at the two positions A1.
  • processor 140 positions head system 210 as shown in FIG. 4B, with the second rows aligned with respective selected paths A s through E s .
  • Processor 140 then activates the transport system such that the second row x of each group is moved along the selected path for its group, while dispensing droplets from each second row x of the groups A, B, C, D, and E in all of the pattern for the selected path of the first group.
  • two repetitions of dispensing from head system 210 may be performed to obtain the complete array as illustrate in FIG. 4B.
  • FIG. 4A two repetitions of dispensing from head system 210 may be performed to obtain the complete array as illustrate in FIG. 4B.
  • droplets are dispensed from each of the second rows x of each of the groups, in the complete pattern for the selected path of the corresponding group.
  • processor 140 moving the second rows x along the selected paths A s through E s , after identifying the error in dispenser A y 1, rather than using the first rows y, errors in the array are avoided which might require further passes of head 210 over the same region of the substrate to correct. Further, since dispensers of a same series in each group are loaded with the same fluid, re-loading of the head system is not required to compensate for dispenser errors.
  • FIG. 4 represents the simple case where there are no error dispensers in all of the second rows A x , B x , C x , D x , and E x .
  • Operation of a method of the present invention in such a situation is illustrated in FIG. 5 using the same head system in FIG. 4.
  • no deposition repetitions are illustrated in FIG. 5.
  • the following dispensers in the first rows y have been identified as being in error: A y 1, B y 3, C y 2, D y 1, E y 1, and E y 3.
  • FIG. 5 the following dispensers in the first rows y have been identified as being in error: A y 1, B y 3, C y 2, D y 1, E y 1, and E y 3.
  • At least one or more dispensers in at least one or more of the second rows y has been found to additionally be in error so that it is not possible to use the method described in connection with FIG. 4.
  • the first row y and second row x of each group A, B, C, D, E are alternately moved along the selected path for that group while droplets are dispensed from non-error dispensers of the first and second rows of each group in different parts of the pattern for the selected path for the respective groups.
  • the first rows A y , B y , C y , D y , E y are aligned with the selected paths A s through E s and moved along those paths with respect to the substrate while dispensing drops from non-error dispensers in the first rows of the groups in accordance with a part of the pattern for those groups, as illustrated in FIG. 5A.
  • Head system 210 can then be re-positioned such that the second rows A x , B x , C x , D x , E x are aligned with selected paths A s through E s .
  • the second rows A x , B x , C x , D x , E x are then moved along selected paths A s through E s with respect to the substrate while dispensing drops from non-error dispensers in the second rows of the groups in accordance with a part of the pattern for those groups, as illustrated in FIG. 5B.
  • the columns of deposited droplets 1-4 are spaced closer together than the columns 1-4 of respective dispensers (the dispensed drop columns are "compressed" relative to the respective dispensers).
  • This decrease in deposited drop spacing in a direction of travel of the head system is readily obtained with pulse jet dispensers by processor 140 correctly timing dispenser actuation as head system 210 moves over the substrate.
  • Such compression allows for arrays with deposited drop spacing as measured in the direction of head travel, to be independent of the spacing of the respective dispensers which deposited them.
  • an apparatus of the present invention includes a substrate station 20 on which can be mounted a substrate 10. Pins or similar means (not shown) can be provided on substrate station 20 by which to approximately align substrate 10 to a nominal position thereon.
  • Substrate station 20 can include a vacuum chuck connected to a suitable vacuum source (not shown) to retain a substrate 10 without exerting too much pressure thereon, since substrate 10 is often made of glass.
  • a dispensing head system 210 is retained by a head retainer 208.
  • Head system 210 can be positioned at any position facing substrate 10 by means of a transport system.
  • the transport system includes a carriage 62 connected to a first transporter 60 controlled by processor 140 through line 66, and a second transporter 100 controlled by processor 140 through line 106.
  • Transporter 60 and carriage 62 are used execute one axis positioning of station 20 (and hence mounted substrate 10) facing the dispensing head system 210, by moving it in the direction of nominal axis 63, while transporter 100 is used to provide adjustment of the position of head retainer 208 in a direction of nominal axis 204 (and hence move the rows of dispensers as described in connection with FIGS. 4 and 5).
  • head system 210 can be scanned line by line, by scanning along a line over substrate 10 in the direction of axis 204 using transporter 100, while line by line movement of substrate 10 in a direction of axis 63 is provided by transporter 60.
  • Head system 210 may also optionally be moved in a vertical direction 202, by another suitable transporter (not shown).
  • other scanning configurations could be used.
  • both transporters 60 and 100, or either one of them, with suitable construction could be used to perform the foregoing scanning of head system 210 with respect to substrate 10.
  • An encoder 30 communicates with processor 140 to provide data on the exact location of substrate station 20 (and hence substrate 10 if positioned correctly on substrate station 20), while encoder 34 provides data on the exact location of holder 208 (and hence head system 210 if positioned correctly on holder 208). Any suitable encoder, such as an optical encoder, may be used which provides data on linear position.
  • Angular positioning of substrate station 20 is provided by a transporter 120, which can rotate substrate station 20 about axis 202 under control of processor 140.
  • substrate station 20 (and hence a mounted substrate) is rotated by transporter 120 under control of processor 140 in response to an observed angular position of substrate 10 as determined by processor 140 through viewing one or more fiducial marks on substrate 10 (particularly fiducial marks 18) with a camera (not shown). This rotation will continue until substrate 10 has reached a predetermined angular relationship with respect to dispensing head system 210.
  • the mounted substrate 10 will typically be rotated to align one edge (length or width) with the scan direction of head system 210 along axis 204.
  • Head system 210 may contain one or more (for example, two) heads mounted on the same head retainer 208.
  • Each such head may be of a type commonly used in an ink jet type of printer and may, for example, have one hundred fifty drop dispensing orifices in each of two parallel rows, six chambers for holding polynucleotide solution communicating with the three hundred orifices, and three hundred ejectors which are positioned in the chambers opposite a corresponding orifice.
  • Each ejector is in the form of an electrical resistor operating as a heating element under control of processor 140 (although piezoelectric elements could be used instead).
  • Each orifice with its associated ejector and portion of the chamber defines a corresponding pulse jet with the orifice acting as a nozzle.
  • head system 210 could, for example, have more or less pulse jets as desired (for example, at least ten or at least one hundred pulse jets).
  • application of a single electric pulse to an ejector causes a droplet to be dispensed from a corresponding orifice.
  • typically about twenty orifices in each group of six reservoirs typically about twenty orifices in each group of six reservoirs (many of the orifices are unused and are plugged with glue), will be dispensing the same fluid.
  • each "series" in such a configuration has twenty dispensers.
  • Certain elements of each head can be adapted from parts of a commercially available thermal inkjet print head device available from Hewlett-Packard Co.
  • the amount of fluid that is expelled in a single activation event of a pulse jet can be controlled by changing one or more of a number of parameters, including the orifice diameter, the orifice length (thickness of the orifice member at the orifice), the size of the deposition chamber, and the size of the heating element, among others.
  • the amount of fluid that is expelled during a single activation event is generally in the range about 0.1 to 1000 pL, usually about 0.5 to 500 pL and more usually about 1.0 to 250 pL.
  • a typical velocity at which the fluid is expelled from the chamber is more than about 1 m/s, usually more than about 10 m/s, and may be as great as about 20 m/s or greater.
  • the orifice is in motion with respect to the receiving surface at the time an ejector is activated, the actual site of deposition of the material will not be the location that is at the moment of activation in a line-of-sight relation to the orifice, but will be a location that is predictable for the given distances and velocities.
  • the sizes of the features can have widths (that is, diameter, for a round spot) in the range from a minimum of about 10 ⁇ m to a maximum of about 1.0 cm.
  • material can be deposited according to the invention in small spots whose width is in the range about 1.0 ⁇ m to 1.0 mm, usually about 5.0 ⁇ m to 500 ⁇ m, and more usually about 10 ⁇ m to 200 ⁇ m.
  • Spot sizes can be adjusted as desired, by using one or a desired number of pulses from a pulse jet to provide the desired final spot size.
  • the apparatus further includes a sensor in the form of a camera 304, to monitor dispensers for errors (such as failure to dispense droplets) by monitoring for drops dispensed onto substrate 10 when required of a dispenser.
  • Camera 304 communicates with processor 140, and should have a resolution that provides a pixel size of about 1 to 100 micrometers and more typically about 4 to 20 micrometers or even 1 to 5 micrometers. Any suitable analog or digital image capture device (including a line by line scanner) can be used for such camera, although if an analog camera is used processor 140 should include a suitable analog/digital converter.
  • a detailed arrangement and use of such a camera to monitor for dispenser errors is described in US Patent No. 6,232,072 entitled "Biopolymer Array Inspection" by William D. Fisher. Particular observations techniques are described, for example, in co-pendittg GB Patent No. 2388601 filed April 30, 1999 by Caren et al., assigned to the same assignee as the present application,
  • the senor can be a drop detector which detects an electrical charge on a dispensed drop, in accordance with the apparatus and methods described in U.S. 09/558, 532 entitled "Array Fabrication with Drop Detection" filed by Christopher A. Schantz et al, Monitoring can occur during formation of an array and the information used during fabrication of the remainder of that array or another array, or test-print patterns can be run before array fabrication.
  • a display 310, speaker 314, and operator input device 312, are further provided. Operator input device 312 may, for example, be a keyboard, mouse, or the like.
  • Processor 140 has access to a memory 141, and controls print head system 210 (specifically, the activation of the ejectors therein), operation of the transport system, operation of each jet in print head system 210, capture and evaluation of images from the camera 304, and operation display 310 and speaker 314.
  • Memory 141 may be any suitable device in which processor 140 can store and retrieve data, such as magnetic, optical, or solid state storage devices (including magnetic or optical disks or tape or RAM, or any other suitable device, either fixed or portable).
  • Processor 140 may include a general purpose digital microprocessor suitably programmed from a computer readable medium carrying necessary program code, to execute all of the functions required of it as described below.
  • processor 140 such as processor 140 includes any hardware and/or software combination which will perform the required functions.
  • Suitable programming can be provided remotely to processor 140, or previously saved in a computer program product such as memory 141 or some other portable or fixed computer readable storage medium using any of those devices mentioned below in connection with memory 141.
  • a magnetic or optical disk 324 may carry the programming, and can be read by disk reader 326.
  • This target drive pattern is the instructions for driving the apparatus components as required to form the target array (which includes target locations and dimension for each spot) on substrate 10 and includes, for example, movement commands to transporters 60 and 100 as well as firing commands for each of the pulse jets in head system 210 co-ordinated with the movement of head system 210 and substrate 10, as well as instructions for which polynucleotide solution (or precursor) is to be loaded in each pulse jet (that is, the "loading pattern").
  • This target drive pattern is based upon the target array pattern and can have either been input from an appropriate source (such as input device 312, a portable magnetic or optical medium, or from a remote server, any of which communicate with processor 140), or may have been determined by processor 140 based upon an input target array pattern (using any of the appropriate sources previously mentioned) and the previously known nominal operating parameters of the apparatus. Further, it will be assumed that drops of different biomonomer or biopolymer containing fluids (or other fluids) have been placed at respective regions of a loading station (not shown). Operation of the following sequences are controlled by processor 140, following initial operator activation, unless a contrary indication appears.
  • an appropriate source such as input device 312, a portable magnetic or optical medium, or from a remote server, any of which communicate with processor 140
  • processor 140 may have been determined by processor 140 based upon an input target array pattern (using any of the appropriate sources previously mentioned) and the previously known nominal operating parameters of the apparatus. Further, it will be assumed that drops of different biomonomer or biopolymer containing
  • the operation is basically follows: (i) determine a target drive pattern (if not already provided) to obtain target array pattern, based on nominal operating parameters and target polynucleotide array pattern; (ii) evaluate data from the sensor for errors in the operation of the dispensers (for example. dispenser does not dispense a drop upon command) (iii) if there is no error in one or more operating parameters then the apparatus is operated according to the target drive pattern; (iv) if there is an error in one or more dispensers then processor 140 derives, based on the error, a corrected drive pattern from the target pattern such that firing by error dispensers is replaced by firing from non-error dispensers in accordance with the methods already described above.
  • a corrected drive pattern can either be determined initially prior to dispensing droplets to fabricate the array, or may be determined (and continually corrected) during formation of an array as different dispenser errors are detected.
  • the target drive pattern may be saved in memory or just derived during the actual array fabrication and sent as instructions directly to the apparatus components.
  • any discrepancy between a nominal dispenser parameter and an actual parameter may optionally only be classified as an "error" if it meets or exceeds a predetermined threshold value.
  • dispenser errors which may occur in the apparatus of FIG. 6 include any one or more of the following:
  • the apparatus is then operated as follows: (a) load head system 210 with a first set of polynucleotide containing solutions or their precursors (for example, a given head may be able to hold n different members); (b) dispense droplets from head system 210 onto substrate 10 or a set of substrates in accordance with the target or corrected drive patterns to provide the target array pattern for the first set on each of multiple arrays 12; and (c) repeat the foregoing sequence starting at step (i) with a second set and subsequent sets of polynucleotide containing solutions or their precursors, until all required solutions have been dispensed onto substrate 10 (for example, if each array has m ⁇ n members, and presynthesized polynucleotides are being dispensed, then the sequence will be repeated m times).
  • a loading sequence for head system 210 is more completely described in copending patent applications "FABRICATING BIOPOLYMER ARRAYS", by Caren et al., US Patent No. 6,323,043, and “PREPARATION OF BIOPOLYMER ARRAYS" by A. Schleifer et al., US Patent No. 6,242,266, both filed April 30, 1999 and both assigned to the same assignee as the present application, and the references cited therein, including the possibility of using a flexible microtitre plate as described in "Method and Apparatus for Liquid Transfer", US Patent No. 6,689,323.
  • Processor 140 can control pressure within head system 210 to load each polynucleotide solution into the chambers in the head by drawing it through the orifices as described in one or more of the foregoing applications.
  • Substrate 10 is loaded onto substrate station 20 either manually by an operator, or optionally by a suitable automated driver (not shown) controlled, for example, by processor 140.
  • the deposition sequence is then initiated to deposit the desired arrays of polynucleotide containing fluid droplets on the substrate to provide drops on the substrate according to the target pattern each with respective feature locations and dimensions.
  • processor 140 will operate the apparatus according to the target or corrected drive pattern, by causing the transport system to position head system 210 facing substrate station 20, and particularly the mounted substrate 10, and with head system 210 at an appropriate distance from substrate 10.
  • Processor 140 then causes the transport system to scan head system 210 across substrate 10 line by line (or in some other desired pattern), while co-ordinating activation of the ejectors in head system 210 so as to dispense droplets as described above.
  • processor 140 can repeat the load and dispensing sequences one or more times until head system 210 has dispensed droplets in to obtain the target arrays 12 to be formed on substrate 10.
  • the number of spots in any one array 12 can, for example, be at least ten, at least one hundred, at least one thousand, or even at least one hundred thousand.
  • a user When a user receives an array made by an apparatus or method of the present invention, it will typically be exposed to a sample and the array interrogated following exposure. Interrogation is usually accomplished by a suitable scanner which can read the location and intensity of fluorescence at each feature of an array following exposure to a fluorescently labeled sample (such as a polynucleotide containing sample).
  • a fluorescently labeled sample such as a polynucleotide containing sample.
  • a scanner may be similar to the GENEARRAY scanner available from Hewlett-Packard, Palo Alto, CA.
  • Results from the interrogation can be processed such as by rejecting a reading for a feature which is below a predetermined threshold and/or forming conclusions based on the pattern read from the array (such as whether or not a particular target sequence may have been present in the sample).
  • the results of the interrogation or processing can be forwarded (such as by communication) to a remote location if desired, for further use.
  • the present methods and apparatus may be used to deposit biopolymers or other chemical moieties on surfaces of any of a variety of different substrates, including both flexible and rigid substrates.
  • Preferred materials provide physical support for the deposited material and endure the conditions of the deposition process and of any subsequent treatment or handling or processing that may be encountered in the use of the particular array.
  • the array substrate may take any of a variety of configurations ranging from simple to complex. Thus, the substrate could have generally planar form, as for example a slide or plate configuration, such as a rectangular or square or disc.
  • the substrate will be shaped generally as a rectangular solid, having a length in the range about 4 mm to 1 m, usually about 4 mm to 600 mm, more usually about 4 mm to 400 mm; a width in the range about 4 mm to 1 m, usually about 4 mm to 500 mm and more usually about 4 mm to 400 mm; and a thickness in the range about 0.01 mm to 5.0 mm, usually from about 0.1 mm to 2 mm and more usually from about 0.2 to 1 mm.
  • larger substrates can be used, particularly when such are cut after fabrication into smaller size substrates carrying a smaller total number of arrays 12.
  • any of a variety of geometries of arrays on a substrate 10 may be fabricated other than the rectilinear rows and columns of arrays 12 of FIG 1.
  • arrays 12 can be arranged in a sequence of curvilinear rows across the substrate surface (for example, a sequence of concentric circles or semi-circles of spots), and the like.
  • the pattern of features 16 may be varied from the rectilinear rows and columns of spots in FIG. 2 to include, for example, a sequence of curvilinear rows across the substrate surface (for example, a sequence of concentric circles or semi-circles of spots), and the like.
  • the arrangement of dispensers in head system 210 may be altered accordingly.
  • the configuration of the arrays and their features may be selected according to manufacturing, handling, and use considerations.
  • the substrates may be fabricated from any of a variety of materials.
  • the materials from which the substrate may be fabricated should ideally exhibit a low level of non-specific binding during hybridization events.
  • a material that is transparent to visible and/or UV light it will also be preferable to employ a material that is transparent to visible and/or UV light.
  • materials of interest include: nylon, both modified and unmodified, nitrocellulose, polypropylene, and the like, where a nylon membrane, as well as derivatives thereof, may be particularly useful in this embodiment.
  • specific materials of interest include: glass; plastics (for example, polytetrafluoroethylene, polypropylene, polystyrene, polycarbonate, and blends thereof, and the like); metals (for example, gold, platinum, and the like).
  • the substrate surface onto which the polynucleotide compositions or other moieties is deposited may be smooth or substantially planar, or have irregularities, such as depressions or elevations.
  • the surface may be modified with one or more different layers of compounds that serve to modify the properties of the surface in a desirable manner.
  • modification layers when present, will generally range in thickness from a monomolecular thickness to about 1 mm, usually from a monomolecular thickness to about 0.1 mm and more usually from a monomolecular thickness to about 0.001 mm.
  • Modification layers of interest include: inorganic and organic layers such as metals, metal oxides, polymers, small organic molecules and the like.
  • Polymeric layers of interest include layers of: peptides, proteins, polynucleic acids or mimetics thereof (for example, peptide nucleic acids and the like); polysaccharides, phospholipids, polyurethancs, polyesters, polycarbonates, polyureas, polyamides, polyethyleneamines, polyarylene sulfides, polysiloxanes, polyimides, polyacetates, and the like, where the polymers may be hetero- or homopolymeric, and may or may not have separate functional moieties attached thereto (for example, conjugated).

Claims (11)

  1. Un procédé de fabrication d'un arrangement chimique (12) utilisant :
    un système (210) de têtes à multiples groupes de distributeurs de gouttes qui se déplacent à l'unisson, dans lequel chaque groupe comprend deux séries ou davantage de distributeurs de gouttes, et dans lequel chacune desdites séries comprend au moins un premier et un deuxième distributeurs de gouttes chargés d'un même fluide ;
    un système de transport (60, 100, 120) pour déplacer le système de têtes par rapport à un substrat (10) d'une manière telle que des distributeurs différents inclus dans les séries de chaque groupe suivent des trajets respectifs ; et
    un processeur (140) destiné à amener des distributeurs à distribuer des gouttelettes selon un motif le long d'un trajet sélectionné pour chaque groupe au cours du fonctionnement du système de transport de façon à former l'arrangement ;
    caractérisé en ce que le procédé comprend les étapes consistant à :
    a) identifier une erreur dans ledit premier distributeur de gouttes d'un groupe ; et
    b) déplacer ledit groupe de distributeurs pour distribuer des gouttelettes à partir du deuxième distributeur de gouttes dudit groupe le long d'au moins une partie du trajet sélectionné pour ledit groupe.
  2. Un procédé selon la revendication 1 dans lequel des gouttelettes sont distribuées, à l'étape b), à partir de chaque deuxième distributeur de la série à l'intérieur de chacun des groupes multiples dans au moins une partie du motif pour le trajet sélectionné du groupe contenant cette série.
  3. Un procédé selon la revendication 1 dans lequel des gouttelettes sont distribuées, à l'étape b), à partir d'un deuxième distributeur d'une série selon un motif complet pour le premier distributeur de la série contenant le deuxième distributeur.
  4. Un procédé selon la revendication 1, dans lequel les gouttelettes sont distribuées, à l'étape b), à partir d'au moins un deuxième distributeur d'un premier groupe, selon un motif complet pour le trajet sélectionné du premier groupe.
  5. Un procédé selon l'une quelconque des revendications précédentes, dans lequel :
    une série de distributeurs inclus à l'intérieur d'un groupe communique avec un réservoir correspondant commun pour cette série.
  6. Un procédé selon l'une quelconque des revendications précédentes dans lequel les distributeurs sont des éjecteurs à impulsions.
  7. Un procédé selon l'une quelconque des revendications précédentes dans lequel, lorsqu'un deuxième distributeur d'un deuxième groupe est de plus en erreur, le premier et le deuxième distributeurs de chaque groupe sont déplacés en alternance le long du trajet sélectionné pour ce groupe tandis que des gouttelettes sont distribuées à partir de distributeurs sans erreurs du premier et du deuxième groupes dans au moins une partie du motif pour les trajets sélectionnés pour le premier et le deuxième groupes.
  8. Un appareil de fabrication d'un arrangement chimique, qui comprend :
    un système (210) de têtes à multiples groupes de distributeurs de gouttes qui se déplacent à l'unisson, dans lequel chaque groupe comprend deux séries ou plus de deux série de distributeurs de gouttes, et dans lequel chacune desdites séries comprend au moins un premier et un deuxième distributeurs de gouttes chargés d'un même fluide ;
    un système de transport (60, 100, 120) pour déplacer le système de têtes par rapport à un substrat (10) d'une manière telle que des distributeurs différents inclus dans les séries de chaque groupe suivent des trajets respectifs ; et
    un processeur (140) destiné à amener des distributeurs à distribuer des gouttelettes selon un motif le long d'un trajet sélectionné pour chaque groupe au cours du fonctionnement du système de transport de façon à former l'arrangement ;
    caractérisé en ce que l'appareil comprend :
    a) un moyen d'identification d'une erreur dans ledit premier distributeur de gouttes d'un groupe ; et
    b) un moyen de déplacement, en réponse audit moyen d'identification d'erreur, dudit groupe de distributeurs pour distribuer des gouttelettes à partir du deuxième distributeur de gouttes dudit groupe le long d'au moins une partie du trajet sélectionné pour ledit groupe.
  9. L'appareil selon la revendication 8, dans lequel le premier et le deuxième distributeurs de gouttes sont chargés d'un même fluide par des connexions à un réservoir commun contenant ledit fluide.
  10. Un appareil selon la revendication 8 ou 9 dans lequel les distributeurs sont des éjecteurs à impulsions.
  11. Un produit programme informatique à utiliser avec un appareil de fabrication d'un arrangement chimique (12) qui comprend :
    un système (210) de têtes à multiples groupes de distributeurs de gouttes qui se déplacent à l'unisson, chaque groupe comprenant de multiples distributeurs ;
    un système de transport (60, 100, 120) pour déplacer le système de têtes par rapport à un substrat (10) d'une manière telle que des distributeurs différents des groupes suivent des trajets respectifs ; et
    un processeur (140),
    le produit programme informatique comprenant un milieu d'enregistrement lisible par informatique sur lequel est enregistré un programme informatique et étant caractérisé en ce qu'il exécute, lorsqu'il est chargé dans le processeur, les étapes consistant à :
    a) identifier une erreur dans ledit premier distributeur de gouttes d'un groupe ; et
    b) amener ledit système de transport à déplacer, lorsqu'un distributeur d'un premier groupe est en erreur, un deuxième distributeur de chaque groupe le long d'un trajet sélectionné pour son groupe tout en amenant ledit système de têtes à distribuer des gouttelettes à partir d'au moins le deuxième distributeur du premier groupe dans au moins une partie du motif pour le trajet sélectionné du premier groupe.
EP01306532A 2000-07-31 2001-07-31 Procédé, appareil et programme d'ordinateur pour fabriquer un arrangement de composés chimiques Expired - Lifetime EP1179368B1 (fr)

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Families Citing this family (61)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AUPO625497A0 (en) * 1997-04-16 1997-05-15 Macquarie Research Limited Analysis of molecules
DE10017790A1 (de) * 2000-04-10 2001-10-11 Basf Ag Verfahren zur Herstellung von Biopolymer-Feldern mit Echtzeitkontrolle
US7731905B2 (en) * 2001-03-26 2010-06-08 Canon Kabushiki Kaisha Process for producing probe carrier and apparatus thereof
US6943036B2 (en) 2001-04-30 2005-09-13 Agilent Technologies, Inc. Error detection in chemical array fabrication
JP2004532983A (ja) * 2001-05-03 2004-10-28 アフィメトリックス インコーポレイテッド 高スループットマイクロアレイスポッティングシステムおよび方法
US6696298B2 (en) * 2001-12-07 2004-02-24 Biosearch Technologies, Inc. Multi-channel reagent dispensing apparatus
US20030143329A1 (en) * 2002-01-30 2003-07-31 Shchegrova Svetlana V. Error correction in array fabrication
US7569343B2 (en) 2002-06-28 2009-08-04 Rosetta Inpharmatics Llc Methods to assess quality of microarrays
JP2004045241A (ja) * 2002-07-12 2004-02-12 Nisshinbo Ind Inc マイクロアレイの作製方法
US20040018635A1 (en) * 2002-07-26 2004-01-29 Peck Bill J. Fabricating arrays with drop velocity control
US7101508B2 (en) * 2002-07-31 2006-09-05 Agilent Technologies, Inc. Chemical array fabrication errors
EP1548448A4 (fr) * 2002-09-27 2009-11-11 Shimadzu Corp Procede et dispositif de conditionnement de liquide
US20040152081A1 (en) * 2003-01-31 2004-08-05 Leproust Eric M. Viscosity control during polynucleotide synthesis
ES2920892T3 (es) 2003-06-12 2022-08-11 Accupath Diagnostic Laboratories Inc Método para formar matrices de células
US20050084981A1 (en) * 2003-10-16 2005-04-21 Magdalena Ostrowski Method of depositing a bioactive material on a substrate
JP4711326B2 (ja) * 2003-12-22 2011-06-29 キヤノン株式会社 検定試料および検量線の作製方法
DE102004062281A1 (de) * 2003-12-29 2005-07-28 Siemens Ag Verfahren und Spotting-Lösung zum Herstellen von Microarrays
US7875463B2 (en) * 2004-03-26 2011-01-25 Agilent Technologies, Inc. Generalized pulse jet ejection head control model
US20060246599A1 (en) * 2005-04-29 2006-11-02 Sarah Rosenstein Lateral flow device
US20060246574A1 (en) * 2005-04-29 2006-11-02 Sarah Rosenstein Dispenser for making a lateral flow device
US20070067110A1 (en) * 2005-09-21 2007-03-22 Nelson Charles F Iii Generation of negative controls for arrays
EP1933974A1 (fr) * 2005-10-07 2008-06-25 Koninklijke Philips Electronics N.V. Dispositif a jet d'encre pour le positionnement regule des gouttelettes d'une substance sur un substrat, procede de positionnement regule des gouttelettes d'une substance, et utilisation d'un dispositif a jet d'encre
CN101282842B (zh) 2005-10-07 2010-09-01 皇家飞利浦电子股份有限公司 用于将物质小滴受控地定位到基底上的喷墨装置和方法
WO2008004186A1 (fr) 2006-07-05 2008-01-10 Koninklijke Philips Electronics N.V. Procédé et utilisation d'un dispositif d'impression pour produire des réseaux d'épreuves biologiques
US20080085511A1 (en) * 2006-10-05 2008-04-10 Peck Bill J Preparation of biopolymer arrays
EP2136911A2 (fr) * 2007-01-19 2009-12-30 Biodot, Inc. Systèmes et procédés pour impression d'ensemble à vitesse élevée et hybridation
US7815275B2 (en) * 2007-07-27 2010-10-19 Shilin Guo Interactive visual card-selection process for mitigating light-area banding in a pagewide array
US7909424B2 (en) * 2007-07-31 2011-03-22 Hewlett-Packard Development Company, L.P. Method and system for dispensing liquid
US20100248981A1 (en) * 2009-03-27 2010-09-30 Affymetrix, Inc. System and methods for processing microarrays
WO2010148365A2 (fr) 2009-06-19 2010-12-23 The Arizona Board Of Regents, A Body Corporate Of The State Of Arizona For And On Behalf Of Arizona State University Réseaux de composés pour profilage d'échantillon
CN103429348B (zh) 2011-01-21 2016-03-09 拜奥-多特公司 具有纵向变换器和可替换毛细管的压电分配器
EP2771128A4 (fr) * 2011-10-28 2015-09-30 Hewlett Packard Development Co Procédé d'adressage parallèle
US11181448B2 (en) 2012-11-06 2021-11-23 Biodot, Inc. Controlled printing of a cell sample for karyotyping
TWI721929B (zh) 2013-08-05 2021-03-11 美商扭轉生物科技有限公司 重新合成之基因庫
CA2975852A1 (fr) 2015-02-04 2016-08-11 Twist Bioscience Corporation Procedes et dispositifs pour assemblage de novo d'acide oligonucleique
WO2016126987A1 (fr) 2015-02-04 2016-08-11 Twist Bioscience Corporation Compositions et méthodes d'assemblage de gène synthétique
WO2016172377A1 (fr) 2015-04-21 2016-10-27 Twist Bioscience Corporation Dispositifs et procédés pour la synthèse de banques d'acides oligonucléiques
US10758886B2 (en) 2015-09-14 2020-09-01 Arizona Board Of Regents On Behalf Of Arizona State University Conditioned surfaces for in situ molecular array synthesis
IL258164B (en) 2015-09-18 2022-09-01 Twist Bioscience Corp Methods to regulate the activity of proteins and cells and a method for the production of nucleic acids
WO2017053450A1 (fr) 2015-09-22 2017-03-30 Twist Bioscience Corporation Substrats flexibles pour synthèse d'acide nucléique
CN108603307A (zh) 2015-12-01 2018-09-28 特韦斯特生物科学公司 功能化表面及其制备
AU2017281040A1 (en) 2016-06-20 2019-01-24 Healthtell Inc. Methods for diagnosis and treatment of autoimmune diseases
AU2017281039A1 (en) 2016-06-20 2019-01-24 Healthtell Inc. Methods for differential diagnosis of autoimmune diseases
WO2018038772A1 (fr) 2016-08-22 2018-03-01 Twist Bioscience Corporation Banques d'acides nucléiques synthétisés de novo
JP6871364B2 (ja) 2016-09-21 2021-05-12 ツイスト バイオサイエンス コーポレーション 核酸に基づくデータ保存
AU2017357818A1 (en) 2016-11-11 2019-05-30 HealthTell, Inc. Methods for identifying candidate biomarkers
EA201991262A1 (ru) 2016-12-16 2020-04-07 Твист Байосайенс Корпорейшн Библиотеки вариантов иммунологического синапса и их синтез
SG11201907713WA (en) 2017-02-22 2019-09-27 Twist Bioscience Corp Nucleic acid based data storage
EP3595674A4 (fr) 2017-03-15 2020-12-16 Twist Bioscience Corporation Banques de variants de la synapse immunologique et leur synthèse
CN111566209A (zh) 2017-06-12 2020-08-21 特韦斯特生物科学公司 无缝核酸装配方法
WO2018231864A1 (fr) 2017-06-12 2018-12-20 Twist Bioscience Corporation Méthodes d'assemblage d'acides nucléiques continus
US11407837B2 (en) 2017-09-11 2022-08-09 Twist Bioscience Corporation GPCR binding proteins and synthesis thereof
US20200209241A1 (en) 2017-09-15 2020-07-02 Arizona Board Of Regents On Behalf Of Arizona State University Methods of classifying response to immunotherapy for cancer
EP3592472A4 (fr) * 2017-09-27 2020-03-18 Hewlett-Packard Development Company, L.P. Motifs de distribution qui dispersent des fluides
KR20240024357A (ko) 2017-10-20 2024-02-23 트위스트 바이오사이언스 코포레이션 폴리뉴클레오타이드 합성을 위한 가열된 나노웰
US10936953B2 (en) 2018-01-04 2021-03-02 Twist Bioscience Corporation DNA-based digital information storage with sidewall electrodes
KR20210013128A (ko) 2018-05-18 2021-02-03 트위스트 바이오사이언스 코포레이션 핵산 하이브리드화를 위한 폴리뉴클레오타이드, 시약 및 방법
SG11202109283UA (en) 2019-02-26 2021-09-29 Twist Bioscience Corp Variant nucleic acid libraries for antibody optimization
AU2020229349A1 (en) 2019-02-26 2021-10-14 Twist Bioscience Corporation Variant nucleic acid libraries for GLP1 receptor
EP3987019A4 (fr) 2019-06-21 2023-04-19 Twist Bioscience Corporation Assemblage de séquences d'acide nucléique basé sur des code-barres
EP4038222A4 (fr) 2019-10-02 2023-10-18 Arizona Board of Regents on behalf of Arizona State University Procédés et compositions pour identifier des néo-antigènes destinés à être utilisés dans le traitement et la prévention du cancer

Family Cites Families (54)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4046513A (en) * 1976-06-30 1977-09-06 Miles Laboratories, Inc. Printed reagent test devices and method of making same
US4436822A (en) * 1981-09-22 1984-03-13 Sherwood Medical Company Reagent mixing system and method
US4963882B1 (en) * 1988-12-27 1996-10-29 Hewlett Packard Co Printing of pixel locations by an ink jet printer using multiple nozzles for each pixel or pixel row
US4907013A (en) * 1989-01-19 1990-03-06 Pitney Bowes Inc Circuitry for detecting malfunction of ink jet printhead
US5057852A (en) * 1989-12-18 1991-10-15 Eastman Kodak Company Printhead for color printer providing image edge enhancement
US5192959A (en) * 1991-06-03 1993-03-09 Xerox Corporation Alignment of pagewidth bars
US5449754A (en) 1991-08-07 1995-09-12 H & N Instruments, Inc. Generation of combinatorial libraries
US5198054A (en) * 1991-08-12 1993-03-30 Xerox Corporation Method of making compensated collinear reading or writing bar arrays assembled from subunits
US6015880A (en) 1994-03-16 2000-01-18 California Institute Of Technology Method and substrate for performing multiple sequential reactions on a matrix
US5807522A (en) * 1994-06-17 1998-09-15 The Board Of Trustees Of The Leland Stanford Junior University Methods for fabricating microarrays of biological samples
US5581284A (en) * 1994-11-25 1996-12-03 Xerox Corporation Method of extending the life of a printbar of a color ink jet printer
US5796418A (en) * 1995-04-12 1998-08-18 Eastman Kodak Company Page image and fault tolerance control apparatus for printing systems
US5864351A (en) * 1995-04-12 1999-01-26 Eastman Kodak Company Heater power compensation for thermal lag in thermal printing systems
US5808639A (en) * 1995-04-12 1998-09-15 Eastman Kodak Company Nozzle clearing procedure for liquid ink printing
US5920331A (en) * 1995-04-12 1999-07-06 Eastman Kodak Company Method and apparatus for accurate control of temperature pulses in printing heads
US5751311A (en) * 1996-03-29 1998-05-12 Xerox Corporation Hybrid ink jet printer with alignment of scanning printheads to pagewidth printbar
US6371590B1 (en) * 1996-04-09 2002-04-16 Samsung Electronics Co., Ltd. Method for testing nozzles of an inkjet printer
US5733509A (en) 1996-04-17 1998-03-31 Motorola, Inc. Method and system for synthesizing oligonucleotides using nucleotide-specific dispensing bars
US5958342A (en) * 1996-05-17 1999-09-28 Incyte Pharmaceuticals, Inc. Jet droplet device
US6057100A (en) * 1996-06-07 2000-05-02 Eos Biotechnology, Inc. Oligonucleotide arrays
KR100197460B1 (ko) * 1996-09-17 1999-06-15 윤종용 잉크젯 프린터의 노즐구동 검사장치 및 방법
US6024925A (en) 1997-01-23 2000-02-15 Sequenom, Inc. Systems and methods for preparing low volume analyte array elements
US6283572B1 (en) * 1997-03-04 2001-09-04 Hewlett-Packard Company Dynamic multi-pass print mode corrections to compensate for malfunctioning inkjet nozzles
US6010205A (en) * 1997-03-12 2000-01-04 Raster Graphics Inc. Method and apparatus for improved printing
US5946011A (en) * 1997-03-18 1999-08-31 Seiko Epson Corporation Printing apparatus and printing method using multiple nozzle groups
US6302517B1 (en) * 1997-03-18 2001-10-16 Seiko Epson Corporation Printing apparatus and printing method using multiple nozzle groups
US6384210B1 (en) 1997-03-20 2002-05-07 University Of Washington Solvent for biopolymer synthesis, solvent microdroplets and methods of use
JP3174539B2 (ja) * 1997-09-08 2001-06-11 キヤノン株式会社 記録方法および記録装置
EP1019696A4 (fr) * 1997-09-19 2003-07-23 Aclara Biosciences Inc Systeme et procede de transfert de liquides
US6228659B1 (en) * 1997-10-31 2001-05-08 PE Corporation (“NY”) Method and apparatus for making arrays
US5984455A (en) * 1997-11-04 1999-11-16 Lexmark International, Inc. Ink jet printing apparatus having primary and secondary nozzles
KR100238593B1 (ko) * 1997-12-19 2000-01-15 윤종용 인쇄 품질 개선 방법
US6089693A (en) * 1998-01-08 2000-07-18 Xerox Corporation Pagewidth ink jet printer including multiple pass defective nozzle correction
DE19817531A1 (de) * 1998-04-09 1999-10-21 Diagnostikforschung Inst Verfahren und Vorrichtung zur Anfertigung von Synthese- oder Analysereihen
JP2000062159A (ja) * 1998-08-17 2000-02-29 Oce Technol Bv 印刷装置のドット生成ユニットの故障を補償する方法
US6461812B2 (en) 1998-09-09 2002-10-08 Agilent Technologies, Inc. Method and multiple reservoir apparatus for fabrication of biomolecular arrays
US6458583B1 (en) 1998-09-09 2002-10-01 Agilent Technologies, Inc. Method and apparatus for making nucleic acid arrays
US6689323B2 (en) 1998-10-30 2004-02-10 Agilent Technologies Method and apparatus for liquid transfer
US6354689B1 (en) * 1998-12-22 2002-03-12 Eastman Kodak Company Method of compensating for malperforming nozzles in a multitone inkjet printer
US6251601B1 (en) * 1999-02-02 2001-06-26 Vysis, Inc. Simultaneous measurement of gene expression and genomic abnormalities using nucleic acid microarrays
DE50001959D1 (de) * 1999-02-19 2003-06-05 Gesim Ges Fuer Silizium Mikros Sensor mit messfeld zur funktionskontrolle einer mikropipette
ES2194397T3 (es) * 1999-02-19 2003-11-16 Hewlett Packard Co Metodo de impresion que compensa automaticamente los defectos de funcionamiento de las toberas para los chorros de tinta.
US6103518A (en) * 1999-03-05 2000-08-15 Beecher Instruments Instrument for constructing tissue arrays
US6347259B1 (en) 1999-04-01 2002-02-12 Virtek Vision International Inc. High precision positioning device and method of operating same
AUPP996099A0 (en) * 1999-04-23 1999-05-20 Silverbrook Research Pty Ltd A method and apparatus(sprint01)
GB2395484B (en) 1999-04-30 2004-07-28 Agilent Technologies Inc Polynucleotide array fabrication
JP2001021558A (ja) 1999-04-30 2001-01-26 Agilent Technol Inc ポリヌクレオチドアレイの製作法
US6347857B1 (en) * 1999-09-23 2002-02-19 Encad, Inc. Ink droplet analysis apparatus
US6446642B1 (en) 1999-11-22 2002-09-10 Agilent Technologies, Inc. Method and apparatus to clean an inkjet reagent deposition device
US6420180B1 (en) * 2000-01-26 2002-07-16 Agilent Technologies, Inc. Multiple pass deposition for chemical array fabrication
US6656740B1 (en) 2000-10-31 2003-12-02 Agilent Technologies, Inc. Pressure variation in array fabrication
US6943036B2 (en) * 2001-04-30 2005-09-13 Agilent Technologies, Inc. Error detection in chemical array fabrication
US7141368B2 (en) 2002-01-30 2006-11-28 Agilent Technologies, Inc. Multi-directional deposition in array fabrication
US7101508B2 (en) * 2002-07-31 2006-09-05 Agilent Technologies, Inc. Chemical array fabrication errors

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US6890760B1 (en) 2005-05-10
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DE60111310T2 (de) 2006-03-16
EP1179368A3 (fr) 2002-10-23
US20050112029A1 (en) 2005-05-26

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