CN1687454A - Method for sceening viral nucleic acid of blood through isothermal amplification based on loop mediated technique - Google Patents

Method for sceening viral nucleic acid of blood through isothermal amplification based on loop mediated technique Download PDF

Info

Publication number
CN1687454A
CN1687454A CN 200510024546 CN200510024546A CN1687454A CN 1687454 A CN1687454 A CN 1687454A CN 200510024546 CN200510024546 CN 200510024546 CN 200510024546 A CN200510024546 A CN 200510024546A CN 1687454 A CN1687454 A CN 1687454A
Authority
CN
China
Prior art keywords
seq
primer
dna
nucleic acid
blood
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Granted
Application number
CN 200510024546
Other languages
Chinese (zh)
Other versions
CN100441698C (en
Inventor
王迅
易进华
郑岚
伍晓菲
裴爱琳
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
FUDAN ZHANGJIANG BIOLOGICAL MEDICINE Co Ltd SHANGHAI
SHANGHAI BLOOD CENTER
Original Assignee
FUDAN ZHANGJIANG BIOLOGICAL MEDICINE Co Ltd SHANGHAI
SHANGHAI BLOOD CENTER
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by FUDAN ZHANGJIANG BIOLOGICAL MEDICINE Co Ltd SHANGHAI, SHANGHAI BLOOD CENTER filed Critical FUDAN ZHANGJIANG BIOLOGICAL MEDICINE Co Ltd SHANGHAI
Priority to CNB2005100245461A priority Critical patent/CN100441698C/en
Publication of CN1687454A publication Critical patent/CN1687454A/en
Application granted granted Critical
Publication of CN100441698C publication Critical patent/CN100441698C/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Abstract

This invention belongs to clinic domain, discloses a detecting method for screening viral nucleic acid of blood through isothermal amplification based on loop mediated technique, which is used to detecting nucleic acid virus selection of blood. We detect or select the nucleic acid consisting of HBV, HCV and HV by technology of molecular domain, this technology process is that: using special primer, using LMAP tech platform to amplify target gene under assistant of a series control system and inner comparison. This invent has the virtue of simple and convenient, economical and fast, delicacy and special, so that it has a expansive application.

Description

Method for sceening viral nucleic acid of blood through based on the isothermal amplification technique that encircles mediation
Technical field
The invention belongs to clinical medicine domain, relate to a kind of blood screening method, more specifically, the present invention relates to a kind of method for sceening viral nucleic acid of blood through of developing based on isothermal amplification technique (LAMP) principle of encircling mediation.
Background technology
Existing blood screen method mainly is enzyme linked immunosorbent detection (ELISA), but because the existence of window phase usually causes omission.The window phase average out to of known HCV antibody test 70 days, the window phase average out to of HIV antibody test 22 days, HBsAg then are 56 days, and the window phase omission of the inspection-free survey of enzyme is almost inevitable, are the current bottlenecks that blood safety further improves that influences.The result of study of area, the Shanghai blood safety evaluation of just having finished recently shows, the geographic blood safety in Shanghai is near developed country's level, enzyme exempt from loss well below 100,000/, under strict quality control ensured, de novo post-transfusion hepatitis was caused by the window phase omission.Therefore must in the blood screening system, introduce new screening method, shorten the detection window phase significantly, could further improve blood safety.
The experience of American-European countries shows that (Nucleic Acid Testing NAT) is applied to blood screening and can effectively shortens HCV antibody test window phase 72% detection of nucleic acids, shortens HIV-1 antibody test window phase 50%.Japan also report uses the NAT blood screening method of HBV DNA can further reduce the omission of HBsAg.NAT introduces blood screening, can shorten the window phase that virus detects greatly, improves blood safety.In March, 1999, the TMA technology of Chiron company and the AmpliScreen technology of Roche company are applied to blood screening under the new drug review procedure of U.S. FDA; In July, 1999, the European medical product standard council (CPMP) stipulates that also raw material, pilot product and the finished product of all blood plasma products all should carry out HCV PCR and detect; In October calendar year 2001, Japan and France apply to blood screening with the NAT technology; In March, 2002 and in October, 2002, the TMA technology of U.S. FDA official approval Chiron company and the AmpliScreen technology of Roche company applied to blood screening after having tried out 2 years under the new drug review procedure.China administrative department of public health stipulates that also after 1 day January in 2003, the former slip of all blood plasma products must carry out NAT and detect before operation.The Shanghai City Blood Center is assessed TMA technology Application feasibility in the blood screening of Shanghai of Chiron company in the period of 2001~2002, proves that the NAT technology has feasibility in China's application, and can improve the blood safety of China to greatest extent.
Isothermal duplication (the Loop-mediated Isothermal Amplification of ring mediation, LAMP) technology, be inexpensive, rapid, easy, the NAT method accurately of the alternative PCR (Polymerase Chain Reaction) that develops alone of Japanese Rong Yan chemistry, worldwide applied for technical patent.Be characterized in 4 kinds of primers are set at 6 positions of target gene, utilize strand replacement reaction under constant temperature, target gene efficiently to be increased.The LAMP technology has identical sensitivity with PCR, but its technology platform is more superior than PCR.Because its reaction is that multiple primer starts jointly, makes reaction result more special than PCR; Since need not reverse transcription just direct cloning RNA, the LAMP technology is more suitable for the augmentation detection of RNA viruses, saves time than PCR; Because what carry out is isothermal duplication, make that being reflected at constant water bath box just can finish, not only save instrument cost, and will make the NAT working method simpler, be applicable to that bedside diagnosis and a large amount of sample detect simultaneously.
What is more important, the LAMP amplification reaction system requires 4 pairs of primers to mate fully just and can increase, therefore other primers in the reaction system are very little to the interference of reaction, LAMP is more suitable for carrying out the duplex or the three joint inspections survey of virus than PCR, in blood screening, use and not only save time greatly, and can also reduce the detection cost significantly.Prove that through preliminary study utilization LAMP detects HBV, HCV can reach the identical detection sensitivity of Roche Amplicor.HBV, HCV and HIV three amplification systems are also tentatively set up, and its detection sensitivity and specificity all do not have bigger change, illustrates that in three amplification systems mutual interference effect is smaller between different primers and the target sequence.Easy, economic, quick with it, the sensitive and special characteristics of LAMP technology are more suitable for using in blood screening, clinical diagnosis than round pcr, and the LAMP blood screening reagent of developing has broad application prospects.
Summary of the invention
The examination detection method that the purpose of this invention is to provide a kind of rapid, easy, economic blood disease nucleic acid.
The present invention is achieved in that a kind of viral nucleic acid detection method that is applied to blood screening, utilize the isothermal amplification technique (LAMP) of ring mediation to carry out, it is by using Auele Specific Primer, utilize the specific region of LMAP technology platform amplified target gene, assisting down of positive and negative Quality Control and internal reference detection architecture, blood disease is carried out nucleic acid screening or detection from molecular level.
Further, the present invention utilizes the particular target nucleotide sequence zone of LAMP technology amplification HBV, HCV, HIV and res-1, thereby realizes carrying out nucleic acid screening or detection for the blood disease that contains HBV, HCV, HIV.
Further, in the examination detection method of blood disease nucleic acid of the present invention, in LAMP blood screening process, introduced the internal reference detection system, the internal reference quality control product is res-1 DNA or the RNA that is different from the amplicon virus target gene, and has used the temporal resolution nephelometry to detect internal reference and viral target gene amplified production simultaneously.
Further, in the examination detection method of blood disease nucleic acid of the present invention, described Auele Specific Primer is selected from:
HBV primer: SEQ ID NO:1-SEQ ID NO:50;
HCV primer: SEQ ID NO:51-SEQ ID NO:101;
HIV primer: SEQ ID NO:102-SEQ ID NO:153;
Res-1 primer: SEQ ID NO:154-SEQ ID NO:179.
Further, in the examination detection method of blood disease nucleic acid of the present invention, HBV, HCV and HIV merging can be carried out two inspections or three inspections, that is.Only need through nucleic acid extraction, amplification and a testing process, HBV, HCV and the HIV in the test sample simultaneously just arrives secondary detection with the blood screening process boil down to one that needs to detect three times originally.
In existing open source literature, LAMP is not used for the report of blood screening about the LAMP technology.The present invention is by using Auele Specific Primer, utilize the specific region of LMAP technology platform amplified target gene, assisting down of a series of Quality Controls and internal reference detection architecture, the blood disease nucleic acid that comprises HBV, HCV and HIV is carried out examination or detection from molecular level.
The present invention has strict discriminating sieving and diagnosis system, to guarantee the accuracy of detected result.This differentiates that the sieving and diagnosis system is made up of with negative quality control product, internal reference quality control product and relevant amplification and detection architecture positive.
Whether effectively the positive and the negative quality control product of differentiating the sieving and diagnosis system among the present invention are every batch of laboratory test results important symbols.For every batch of experiment, must artificially introduce the detection of a negative quality control product, to guarantee that reaction system false positive results can not occur; Every batch of experiment for single virus detection, must artificially introduce the detection of the positive quality control product of a virus to be measured, and survey for duplex or three joint inspections that many viruses detect simultaneously, then in every batch of experiment, detect the detection that all must introduce corresponding positive quality control product, to guarantee that reaction system false negative result can not occur at every virus.Negative quality control product is through HBV, the HCV that detects repeatedly and the human normal plasma of HIV nucleic acid feminine gender.At the positive quality control product of HBV, be the artificial constructed plasmid DNA that comprises HBV specificity target sequence to be checked.At the positive quality control product of HCV and HIV, be the corresponding RNA that obtains in in-vitro transcription by the artificial constructed plasmid that comprises HCV or HIV specificity target sequence to be checked.
Concrete preparation method's operation steps of HBV DNA positive quality control product is as follows:
A. use PCR method to obtain the dna fragmentation (Gene Bank ID:AY738847.1) of one section 421bp of coding HBV surface antigen
B. this fragment is cloned in the pBluescriptII plasmid (buying is from Invitrogene company) construction recombination plasmid with 5 ' BamHI restriction enzyme site and 3 ' PstI restriction enzyme site
C. recombinant plasmid transformed is gone in the DH5 α bacterium, extract plasmid DNA after 37 ℃ of aerated culture spend the night
D. with 0D260 plasmid DNA is carried out quantitatively, serial dilution is to 100Copies/ml and packing-80 ℃ preservation, as HBV DNA positive quality control product
With HCV is example, and concrete preparation method's operation steps of RNA positive quality control product is as follows:
A. use PCR method to obtain the dna fragmentation (Gene Bank ID:U94722.1) of one section 422bp in coding HCV 5 ' UTR district
B. this fragment is cloned in pBluescriptII SK (+) plasmid (buying is from Invitrogene company) construction recombination plasmid with EcoR V restriction enzyme site
C. recombinant plasmid transformed is gone in the DH5 α bacterium, extract plasmid DNA after 37 ℃ of aerated culture spend the night
D. with OD260 plasmid DNA is carried out quantitatively
E. use T3 or T7 RNA polymerase plasmid DNA to be transcribed external
F. transcription product is crossed column purification after Dnase I digestion
G. with OD260 gained RNA is carried out quantitatively, serial dilution is to 1000Copies/ml and packing-80 ℃ preservation, as HCV RNA positive quality control product
The present invention differentiates that the internal reference quality control product is the important indicator whether each amplified reaction of examination normally carries out in the sieving and diagnosis system.Internal reference quality control product among the present invention is res-1 DNA or the RNA that is different from the amplicon virus target gene, joins in each amplified reaction with the amplification threshold concentration, can utilize reaction conditions self to increase, but not influence the amplification of viral target gene.The appearance time of its amplified production is after 60 minutes, lags behind viral target gene amplified production far away; Peak height significantly is lower than viral target gene amplified production less than 0.3.If reaction result is the product peak that occurred later at 60 minutes less than 0.3, then represent to have only in the reaction system internal reference quality control product to increase, this detection result of specimen is negative; If reaction result is the product peak that occurred before 60 minutes greater than 0.3, represent that then viral target gene to be measured increases in the reaction system, this detection result of specimen is positive; If in the reaction result, the spawn peak does not appear, show that then other reasons such as reaction system gene-amplification inhibition causes reaction to fail normally to carry out, and detects failure; If occurred later on product peak in the reaction result at 60 minutes greater than 0.3, then might cause appearance time to be delayed for the copy number of virus to be measured is extremely low, also might be for reaction has taken place due to the non-specific amplification, detection reaction need repeat once.The introducing of internal reference quality control product has reduced the false negative and the false-positive incidence of detected result, has improved the accuracy of detected result, and is extremely important in the detection of nucleic acids field of blood screening.Differentiate the principle that nephelometry detects internal reference and viral target gene amplified production simultaneously duration of service in the internal reference detection architecture of the present invention that Here it is.
According to detecting the different of dna virus and RNA viruses, the internal reference quality control product also is divided into DNA and RNA two classes, and usually, the plasmid DNA of structure directly can be used as DNA internal reference quality control product, and RNA internal reference quality control product is then by the expression type Quality Control in-vitro transcription that makes up.Only needing to add a kind of RNA internal reference quality control product in duplex or three joint inspection survey systems gets final product.With HCV is example, and concrete preparation method's operation steps of internal reference quality control product is as follows:
A. with the res-1 dna fragmentation (Gene Bank ID:L09270.1) of 2692bp, be cloned in pBluescriptII SK (+) (buying is from the Invitrogene company) plasmid construction recombination plasmid with BamH I site
B. recombinant plasmid transformed is gone in the DH5 α bacterium, extract plasmid DNA after 37 ℃ of aerated culture spend the night
C. with OD260 plasmid DNA is carried out quantitatively
D. use T3 or T7 RNA polymerase plasmid DNA to be transcribed external
E. transcription product is crossed column purification after Dnase I digestion
F. with OD260 gained RNA is carried out quantitatively, serial dilution detects the internal reference quality control product to 50Copies/ml and packing-80 ℃ preservation as HCV
Specificity amplification primer in the differential diagnosis of the present invention system designs by the contriver, prepares by the nucleic acid synthesizer.The nucleic acid synthesizer can be selected the product of different manufacturers, different model for use, also can entrust relevant genome company synthetic.Specificity amplification primer among the present invention is by TAKARA company synthetic.All primers are according to LAMP design of primers principle, by Japanese Rong Yan chemistry website (www.eiken.co.
Jp) go up the primer-design software design.The nucleic acid specificity primer sequence of HBV, HCV, HIV virus is as follows:
(1) HBV primer, totally 10 covers
Numbering Title Sequence Length
?1 ??FIP AGGACAAACGGGCAACATACCTTCTTCATCCTGCTGCTATGC (SEQ?ID?NO:1) 42
??BIP TCCAGGAACATCAACCACCAGCAGGTTCCTTGAGCAGGAATC (SEQ?ID?NO:2) 42
??F3 GCTATCGCTGGATGTGTCTG(SEQ?ID?NO:3) 20
??B3 ACAGCAACAAGAGGGAAACA(SEQ?ID?NO:4) 20
??Loop?F CCAGAAGAACCAACAAGAAGATGA(SEQ?ID?NO:5) 24
?2 ??FIP AGGACAAACGGGCAACATACCTTCTTCATCCTGCTGCTATGC (SEQ?ID?NO:6) 42
??BIP TCCAGGAACATCAACCACCAGCAGGTTCCTTGAGCAGGAATC (SEQ?ID?NO:7) 42
??F3 GCTATCGCTGGATGTGTCTG(SEQ?ID?NO:8) 20
??B3 ACAGCAACAAGAGGGAAACA(SEQ?ID?NO:9) 20
??Loop?F GGTAGTCCAGAAGAACCAACAAG(SEQ?ID?NO:10) 23
?3 ??FIP GATAAAACGCCGCAGACACATCCCCAACCTCTTGTCCTCCAA (SEQ?ID?NO:11) 42
??BIP CCTGCTGCTATGCCTCATCTTCTGACAAACGGGCAACATACCTT (SEQ?ID?NO:12) 44
??F3 CAAAATTCGCAGTCCCCAAC(SEQ?ID?NO:13) 20
??B3 GGTGGTTGATGTTCCTGGA(SEQ?ID?NO:14) 19
??Loop?F CAGCGATAGCCAGGACAAA(SEQ?ID?NO:15) 19
??Loop?B GTTGGTTCTTCTGGACTACC(SEQ?ID?NO:16) 20
?4 ??FIP GATAAAACGCCGCAGACACATCCCCAACCTCTTGTCCTCCAA (SEQ?ID?NO:17) 42
??BIP CCTGCTGCTATGCCTCATCTTCTGACAAACGGGCAACATACCTT (SEQ?ID?NO:18) 44
??F3 ?CCAAAATTCGCAGTCCCCAA(SEQ?ID?NO:19) 20
??B3 ?GCAGGTTTTGCATGGTCC(SEQ?ID?NO:20) 18
??Loop?F ?CAGCGATAACCAGGACAA(SEQ?ID?NO:21) 18
??Loop?B ?TGTTGGTTCTTCTGGA(SEQ?ID?NO:22) 16
?5 ??FIP ?GATTGGAGGTTGGGGACTGCGAATTTTCTAGGGGGAGCACC ?(SEQ?ID?NO:23) 41
??BIP ?TGGCTATCGCTGGATGTGTCTGATGAGGCATAGCAGCAGGAT ?(SEQ?ID?NO:24) 42
??F3 ?AGAGTCTAGACTCGTGGTGG(SEQ?ID?NO:25) 20
??B3 ?GGGCAACATACCTTGGTAGT(SEQ?ID?NO:26) 20
?6 ??FIP ?TGATTGGAGGTTGGGGACTGCAATTTTCTAGGGGGAGCACC ?(SEQ?ID?NO:27) 41
??BIP ?TGGCTATCGCTGGATGTGTCTGATGAGGCATAGCAGCAGGAT ?(SEQ?ID?NO:28) 42
??F3 ?AGAGTCTAGACTCGTGGTGG(SEQ?ID?NO:29) 20
??B3 ?GGGCAACATACCTTGGTAGT(SEQ?ID?NO:30) 20
?7 ??FIP ?GTGATTGGAGGTTGGGGACTGCAATTTTCTAGGGGGAGCACC (SEQ?ID?NO:31) 42
??BIP ?GGCTATCGCTGGATGTGTCTGCATGAGGCATAGCAGCAGGAT (SEQ?ID?NO:32) 42
??F3 ?AGAGTCTAGACTCGTGGTGG(SEQ?ID?NO:33) 20
??B3 ?GGGCAACATACCTTGGTAGT(SEQ?ID?NO:34) 20
??Loop?F ?GAATTTTGGCCAGGACACGT(SEQ?ID?NO:35) 20
?8 ??FIP ?AGGACAAACGGGCAACATACCTTCTTCATCCTGCTGCTATGC ?(SEQ?ID?NO:36) 42
??BIP ?TCCAGGAACATCAACCACCAGCAGGTTCCTTGAGCAGGAATC ?(SEQ?ID?NO:37) 42
??F3 ?GCTATCGCTGGATGTGTCTG(SEQ?ID?NO:38) 20
??B3 ?ACAGCAACAAGAGGGAAACA(SEQ?ID?NO:39) 20
??Loop?F ?GTCCAGAAGAACCAACAAGAAGATG(SEQ?ID?NO:40) 25
?9 ??FIP ?AGGACAAACGGGCAACATACCTTCTTCATCCTGCTGCTATGC 42
?(SEQ?ID?NO:41)
??BIP ?TCCAGGAACATCAACCACCAGCAGGTTCCTTGAGCAGGAATC ?(SEQ?ID?NO:42) 42
??F3 ?GCTATCGCTGGATGTGTCTG(SEQ?ID?NO:43) 20
??B3 ?ACAGCAACAAGAGGGAAACA(SEQ?ID?NO:44) 20
??Loop?F ?GTCCAGAAGAACCAACAAGAAGA(SEQ?ID?NO:45) 23
?10 ??FIP ?AGGACAAACGGGCAACATACCTTCTTCATCCTGCTGCTATGC ?(SEQ?ID?NO:46) 42
??BIP ?TCCAGGAACATCAACCACCAGCAGGTTCCTTGAGCAGGAATC ?(SEQ?ID?NO:47) 42
??F3 ?GCTATCGCTGGATGTGTCTG(SEQ?ID?NO:48) 20
??B3 ?ACAGCAACAAGAGGGAAACA(SEQ?ID?NO:49) 20
??Loop?F ?GGTAGTCCAGAAGAACCAACAAGAA(SEQ?ID?NO:50) 25
(2) HCV primer, totally 10 covers
Numbering Title Sequence Length
?1 ??FIP ?GGTTKATCCAAGAAAGGACCCAGTCGCCATAGTGGTCTGCGGA ?(SEQ?ID?NO:51) 43
??BIP ?CCGCAAGACTGCTAGCCGAGGCAAGCACCCTATCAGGC ?(SEQ?ID?NO:52) 38
??F3 ?GGCGTTAGTATGAGTGTCGTAC(SEQ?ID?NO:53) 22
??B3 ?CATGGTGCACGGTCTACG(SEQ?ID?NO:54) 18
??Loop?B ?TTGGGTTGCGAAAGG(SEQ?ID?NO:55) 15
?2 ??FIP ?CACCCTATCAGGCAGTACCAAGACTGCTAGCCGAGTAG ?(SEQ?ID?NO:56) 38
??BIP ?GGGAGGTCTCGTAGACCGTCGTTTGGTTTTTCTTTGAGG ?(SEQ?ID?NO:57) 39
??F3 ?GGCGTTAGTATGAGTGTCGTAC(SEQ?ID?NO:58) 22
??B3 ?CTCCACCAACGATCTGAC(SEQ?ID?NO:59) 18
??Loop?F ?CAAGGCCTTTCGCG(SEQ?ID?NO:60) 14
????Loop?B ?CATGAGCACGAATCCTAAA(SEQ?ID?NO:61) 19
??3 ????FIP ?CACCCTATCAGGCAGTACCAAGACTGCTAGCCGAGTAG ?(SEQ?ID?NO:62) 38
????BIP ?GGGAGGTCTCGTAGACCGTCGTTTGGTTTTTCTTTGAGG ?(SEQ?ID?NO:63) 39
????F3 ?GGCGTTAGTATGAGTGTCGTAC(SEQ?ID?NO:64) 22
????B3 ?CTCCACCAACGATCTGAC(SEQ?ID?NO:65) 18
????Loop?F ?CAAGGCCTTTCGC(SEQ?ID?NO:66) 13
????Loop?B ?CATGAGCACGAATCCTAAA(SEQ?ID?NO:67) 19
?4 ????FIP ?TGGAGGCTGCACGACACTCAACTGTCTTCACGCAGAAAGC ?(SEQ?ID?NO:68) 40
????BIP ?GGAACCGGTGAGTACACCGGCCCAAATCTCCAGGCATTGA ?(SEQ?ID?NO:69) 40
????F3 ?CACTCCCCTGTGAGGAACT(SEQ?ID?NO:70) 19
????B3 ?ACTCGGCTAGCAGTCTCG(SEQ?ID?NO:71) 18
????Loop?B ?AATTGCCAGGACGACCGG(SEQ?ID?NO:72) 18
?5 ????FIP ?TGGAGGCTGCACGACACTCAACTGTCTTCACGCAGAAAGC ?(SEQ?ID?NO:73) 40
????BIP ?GGAACCGGTGAGTACACCGGCCCAAATCTCCAGGCATTGA ?(SEQ?ID?NO:74) 40
????F3 ?CACTCCCCTGTGAGGAACT(SEQ?ID?NO:75) 19
????B3 ?ACTCGGCTAGCAGTCTCG(SEQ?ID?NO:76) 18
????Loop?B ?ACGACCGGGTCCTTTCTTGG(SEQ?ID?NO:77) 20
?6 ????FIP ?TGGAGGCTGCACGACACTCAACTGTCTTCACGCAGAAAGC ?(SEQ?ID?NO:78) 40
????BIP ?CCTCCCGGGAGAGCCATAGTGTCGTCCTGGCAATTCCG ?(SEQ?ID?NO:79) 38
????F3 ?CACTCCCCTGTGAGGAACT(SEQ?ID?NO:80) 19
????B3 ?CGGGTTGATCCAAGAAAGGA(SEQ?ID?NO:81) 20
?7 ????FIP ?TGGAGGCTGCACGACACTCAACTGTCTTCACGCAGAAAGC ?(SEQ?ID?NO:82) 40
??BIP ?GGAACCGGTGAGTACACCGGAGCCCAAATCTCCAGGCAT ?(SEQ?ID?NO:83) 39
??F3 ?CACTCCCCTGTGAGGAACT(SEQ?ID?NO:84) 19
??B3 ?ACTCGGCTAGCAGTCTCG(SEQ?ID?NO:85) 18
??Loop?B ?GACGACCGGGTCCTTTCT(SEQ?ID?NO:86) 18
?8 ??FIP ?ACTATGGCTCTCCCGGGAGGACGCAGAAAGCGTCTAGC ?(SEQ?ID?NO:87) 38
??BIP ?ACCGGTGAGTACACCGGAATTGGCACGCCCAAATCTCCAG ?(SEQ?ID?NO:88) 40
??F3 ?CCCCTGTGAGGAACTACTGT(SEQ?ID?NO:89) 20
??B3 ?ACCCAACACTACTCGGCTAG(SEQ?ID?NO:90) 20
??Loop?F ?CACGACACTCATACTAACGCC(SEQ?ID?NO:91) 21
??Loop?B ?AGGACGACCGGGTCCTTTC(SEQ?ID?NO:92) 19
?9 ??FIP ?ACTCGGCTAGCAGTCTCGCGACCGGGTCCTTTCTTGGA ?(SEQ?ID?NO:93) 38
??BIP ?AAAGGCCTTGTGGTACTGCCTGGGATTCGTACTCATGGTGCA ?(SEQ?ID?NO:94) 42
??F3 ?GAGTACACCGGAATTGCCA(SEQ?ID?NO:95) 19
??B3 ?CGGTTGGTGTTACGTTTGGT(SEQ?ID?N0:96) 20
?10 ??FIP ?GCCTTTCGCGACCCAACACTACCCTGGAGATTTGGGCGTG ?(SEQ?ID?NO:97) 40
??BIP ?CGGGAGGTCTCGTAGACCGTGCGGTTGGTGTTACGTTTG ?(SEQ?ID?NO:98) 39
??F3 ?TGGATCAACCCGCTCAATG(SEQ?ID?NO:99) 19
??B3 ?GGAACTTGACGTCCTGTGG(SEQ?ID?NO:100) 19
??Loop?B ?GCACCATGAGTACGAATCCTAAACC(SEQ?ID?NO:101) 25
(3) HIV primer, totally 10 covers
Numbering Title Sequence Length
1 ??FIP ?CGTAACACTAGGCAAAGGTGGCTTCTCTACAATACTTGGCACTAGC 46
?(SEQ?ID?NO:102)
????BIP ?CCCAGAAGACCAAGGGCCACCAGCTTCATTCTTAAGCTCCTCT ?(SEQ?ID?NO:103) 43
????F3 ?AGCAGGACATAACAAGGTAGGA(SEQ?ID?NO:104) 22
????B3 ?GCCATGGAGCCAAATCCT(SEQ?ID?NO:105) 18
????Loop?B ?GCCACACAATGAATGGACACTAGAG(SEQ?ID?NO:106) 25
?2 ????FIP ?CCCCAATCCCCCCTTTTCTTTTAATGAACATCTTAAGACAGCAGTA ?C(SEQ?ID?NO:107) 47
????BIP ?AGTGCAGGGGAAAGAATAGTAGACATTGTCCCTGTAATAAACCCGA ?(SEQ?ID?NO:108) 46
????F3 ?CCCCAAAGTCAAGGAGTAGT(SEQ?ID?NO:109) 20
????B3 ?TTTGCTGGTCCTTTCCAA(SEQ?ID?NO:110) 18
????Loop?F ?TGGATGAATACTGCCAT(SEQ?ID?NO:111) 17
????Loop?B ?AACAGACATACAAACTAGAGAATTAC(SEQ?ID?NO:112) 26
?3 ????FIP ?CCCCAATCCCCCCTTTTCTTAGACAGCAGTACAAATGGCA ?(SEQ?ID?NO:113) 40
????BIP ?AGTGCAGGGGAAAGAATAGTAGACGCTGTCCCTGTAATAAACCCGA ?A(SEQ?ID?NO:114) 47
????F3 ?GGTAAGAGATCAGGCTGAACATC(SEQ?ID?NO:115) 23
????B3 ?GCTGGTCCTTTCCAAAGTGG(SEQ?ID?NO:116) 20
????Loop?F ?TTAAAATTGTGGATGAAT(SEQ?ID?NO:117) 18
????Loop?B ?GCAACAGACATACAAACTAAAG(SEQ?ID?NO:118) 22
?4 ????FIP ?CCCCAATCCCCCCTTTTCTTAGACAGCAGTACAAATGGCA ?(SEQ?ID?NO:119) 40
????BIP ?AGTGCAGGGGAAAGAATAGTAGACCTGCTGTCCCTGTAATAAACCC ?(SEQ?ID?NO:120) 46
????F3 ?GGTAAGAGATCAGGCTGAACATC(SEQ?ID?NO:121) 23
????B3 ?GCTGGTCCTTTCCAAAGTGG(SEQ?ID?NO:122) 20
????Loop?F ?TTAAAATTGTGGATGAAT(SEQ?ID?NO:123) 18
????Loop?B ?GCAACAGACATACAAACTAAAG(SEQ?ID?NO:124) 22
?5 ????FIP ?CGTAACACTAGGCAAAGGTGGCTTCTCTACAATACTTGGCACTAGC 46
?(SEQ?ID?NO:125)
????BIP ?CCAGAAGACCAAGGGCCACAACAGCTTCATTCTTAAGCTCCT ?(SEQ?ID?NO:126) 42
????F3 ?GGTGTGAATATCAAGCAGGACAT(SEQ?ID?NO:127) 23
????B3 ?GAGCCAAATCCTAGGAAAATGTC(SEQ?ID?NO:128) 23
????Loop?B ?CCACACAATGAATGGACACTAGAG(SEQ?ID?NO:129) 24
?6 ????FIP ?CGTAACACTAGGCAAAGGTGGCTCTCTACAATACTTGGCACTAGCA ?(SEQ?ID?NO:130) 46
????BIP ?AGATGGAACAAGCCCCAGAAGACTCTAGTGTCCATTCATTGTGTGG ?(SEQ?ID?NO:131) 46
????F3 ?AGCAGGACATAACAAGGTAGGA(SEQ?ID?NO:132) 22
????B3 ?CAGCTTCATTCTTAAGCTCCTCT(SEQ?ID?NO:133) 23
?7 ????FIP ?CGTAACACTAGGCAAAGGTGGCTCTCTACAATACTTGGCACTAGCA ?(SEQ?ID?NO:134) 46
????BIP ?AGATGGAACAAGCCCCAGAAGACCTCCTCTAAAAGCTCTAGTGTCC ?(SEQ?ID?NO:135) 46
????F3 ?GGTGTGAATATCAAGCAGGACA(SEQ?ID?NO:136) 22
????B3 ?GAGCCAAATCCTAGGAAAATGTC(SEQ?ID?NO:137) 23
?8 ????FIP ?CGTAACACTAGGCAAAGGTGGCTTCTACAATACTTGGCACTAGCAG ?(SEQ?ID?NO:138) 46
????BIP ?AGATGGAACAAGCCCCAGAAGACTCTAGTGTCCATTCATTGTGTGG ?(SEQ?ID?NO:139) 46
????F3 ?GCAGGACATAACAAGGTAGGATC(SEQ?ID?NO:140) 23
????B3 ?CAGCTTCATTCTTAAGCTCCTCT(SEQ?ID?NO:141) 23
?9 ????FIP ?GTCTTCTGGGGCTTGTTCCATCTAAAAGATAAAGCCACCTTTGCC ?(SEQ?ID?NO:142) 45
????BIP ?GGGAGCCACACAATGAATGGACAGAGCCAAATCCTAGGAAAATGTC ?(SEQ?ID?NO:143) 46
????F3 ?GCACTAGCAGCATTAATAACACC(SEQ?ID?NO:144) 23
????B3 ?AGATATGTTGCCCTAAGCCATG(SEQ?ID?NO:145) 22
????Loop?F ?ATCCTCTGTCAGTTTCGTAACACTA(SEQ?ID?NO:146) 25
??Loop?B ?GAGGAGCTTAAGAATGAAGCTGTTA(SEQ?ID?NO:147) 25
?10 ??FIP ?GTCTTCTGGGGCTTGTTCCATCTAGATAAAGCCACCTTTGCCT ?(SEQ?ID?NO:148) 43
??BIP ?GGGAGCCACACAATGAATGGACAGAGCCAAATCCTAGGAAAATGTC ?(SEQ?ID?NO:149) 46
??F3 ?GCACTAGCAGCATTAATAACACC(SEQ?ID?NO:150) 23
??B3 ?AGATATGTTGCCCTAAGCCATG(SEQ?ID?NO:151) 22
??Loop?F ?TCCTCTGTCAGTTTCGTAACACT(SEQ?ID?NO:152) 23
??Loop?B ?GAGGAGCTTAAGAATGAAGCTGTTA(SEQ?ID?NO:153) 25
(4) Res-1 primer, totally 5 covers
Numbering Title Sequence Length
?1 ??FIP ?ACGAGCGGCTTCCATCTTTGATACGACTCTTTTGGCCAAACC ?(SEQ?ID?NO:154) 42
??BIP ?CACAATCCGTTGATGTCGCTGCAAAGAGCGGTATCCCCATGA (SEQ?ID?NO:155) 42
??F3 ?CGGAGTTGCTTCAATCTGCT(SEQ?ID?NO:156) 20
??B3 ?GCGCATTTCTTTGCACCATT(SEQ?ID?NO:157) 20
??Loop?F ?AGAAGAAGCTAATAATGCGATGTGG(SEQ?ID?NO:158) 25
?2 ??FIP ?ACGAGCGGCTTCCATCTTTGATCTCTTTTGGCCAAACCGTCT ?(SEQ?ID?NO:159) 42
??BIP ?CACAATCCGTTGATGTCGCTGCCAAAAGAGCGGTATCCCCAT ?(SEQ?ID?NO:160) 42
??F3 ?CGGAGTTGCTTCAATCTGCT(SEQ?ID?NO:161) 20
??B3 ?GCGCATTTCTTTGCACCATT(SEQ?ID?NO:162) 20
??Loop?F ?AGAAGAAGCTAATAATGCGATGTGG(SEQ?ID?NO:163) 25
?3 ??FIP ?ACGAGCGGCTTCCATCTTTGATTTGGCCAAACCGTCTTTCA ?(SEQ?ID?NO:164) 41
??BIP ?CACAATCCGTTGATGTCGCTGCCAAAAGAGCGGTATCCC ?(SEQ?ID?NO:165) 42
??F3 ?CGGAGTTGCTTCAATCTGCT(SEQ?ID?NO:166) 20
??B3 ?GCGCATTTCTTTGCACCATT(SEQ?ID?NO:167) 20
??Loop?F ?AGAAGAAGCTAATAATGCGATGTGG(SEQ?ID?NO:168) 25
?4 ??FIP ?ACGAGCGGCTTCCATCTTTGATTCTTTTGGCCAAACCGTCTT ?(SEQ?ID?NO:169) 42
??BIP ?CACAATCCGTTGATGTCGCTGCATCAAAAGAGCGGTATCCCC ?(SEQ?ID?NO:170) 42
??F3 ?CGGAGTTGCTTCAATCTGCT(SEQ?ID?NO:171) 20
??B3 ?GCGCATTTCTTTGCACCATT(SEQ?ID?NO:172) 20
??Loop?F ?AGAAGAAGCTAATAATGCGATGTGG(SEQ?ID?NO:173) 25
?5 ??FIP ?TAACGAGCGGCTTCCCCAAACCGTCTTTCACCAC ?(SEQ?ID?NO:174) 20
??BIP ?GCAACACAATCCGTTGAAAGAGCGGTATCCCCAT ?(SEQ?ID?NO:175) 18
??F3 ?GCTATCTGCATGAACGACTC(SEQ?ID?NO:176) 34
??B3 ?GCGCATTTCTTTGCACCA(SEQ?ID?NO:177) 34
??Loop?F ?GATTTAGAAGAAGCTAATAATGCG(SEQ?ID?NO:178) 24
??Loop?B ?GTCGCTGCCCAAATTATAAACC(SEQ?ID?NO:179) 22
Auxiliary reagent in the differential diagnosis of the present invention system comprises:
(1) nucleic acid extraction agent: this reagent can be used for extracting simultaneously viral DNA and the RNA in the blood plasma
Solution 1
Guanidinium isothiocyanate 68%
DTT???????????????????????????????3%
TrisHCl(pH8.0)????????????????????10mM
Carrier
Amylopectin?azure?????????????????10mg/mL
Solution 2
Virahol 100%
Solution 3
Ethanol 70%
The deionization distilled water
The TE damping fluid
TirsHCl(pH8.0)????????????????10mM
EDTA·2Na?????????????????????10mM
(2) LAMP nucleic acid amplification reagent
Master?Mix.(50mM?Tris/pH8.8,25mM?KCl,25mM(NH4)2SO4,20mM?MgSO4,0.25%Tween20,2mM?Betain)
Primer Mix. (0.5~1 * Master Mix.; 1.5~2mM dNTP, the 40pmol primer)
Bst DNA polymerase
The detection method of differential diagnosis of the present invention system, undertaken by following step successively:
(1) nucleic acid extracting,
Use following method can extract HBV DNA
The Eppendorf tube that adds 300 μ l solution 1 to 1.5ml
Add 100 μ l serum or blood plasma to centrifuge tube, and vortex vibrated 5 seconds
Incubated at room (15-25 ℃) was boiled cool to room temperature 10 minutes after 10 minutes
Add 400 μ l solution 2 to centrifuge tube, and vortex vibration 5 seconds 15, centrifugal 15 minutes of 000rpm, the careful suction removed supernatant
Add 500 μ l solution 3 to centrifuge tube, and vortex vibrated 5 seconds; 15, centrifugal 5 minutes of 000rpm, the careful suction removed supernatant
Air drying 10 minutes adds 5 μ l distilled waters to centrifuge tube, complete dissolution precipitation, and 4 ℃ of preservations are stand-by.
Use following method can extract HBV DNA simultaneously, HCV RNA and HIV RNA
The Eppendorf tube that adds 300 μ l solution 1 to 1.5ml
Add 100 μ l serum or blood plasma to centrifuge tube, and vortex vibrated 5 seconds
Incubated at room (15-25 ℃) 10 minutes
Add 400 μ l solution 2 to centrifuge tube, and vortex vibrated 5 seconds; 15, centrifugal 15 minutes of 000rpm, the careful suction removed supernatant
Add 500 μ l solution 3 to centrifuge tube, and vortex vibrated 5 seconds; 15, centrifugal 5 minutes of 000rpm, the careful suction removed supernatant
Air drying 10 minutes adds 5 μ l distilled waters to centrifuge tube, complete dissolution precipitation, and 4 ℃ of preservations are stand-by
(2) LAMP reaction
1. carry out the LAMP DNA cloning according to the following step
Prepare Reaction Mix. (10 person-portion)
Master?Mix.????????????????100.0μl
Primer?Mix.????????????????30.0μl
Bst DNA Polymerase 20.0 μ l (16U/ pipe)
Mending distilled water to final volume is 200.0 μ l
With Reaction Mix. mixing, divide to install to 0.2ml eight PCR tubules, every pipe 20 μ l
Add the template that (1) step extracting goes out in the eight PCR tubules respectively, every pipe 5 μ l, each 5 μ l of positive reference substance and negative control product are used separately as positive control, negative control, mix
Eight PCR tubules are put into real-time turbidimeter LA-200, set reaction conditions: 60 ℃, and 60 minutes
Experiment finishes, and takes out eight PCR tubules, and preserves data
2. carry out LAMP RNA amplification according to the following step
A. prepare Reaction Mix. (10 person-portion)
Master?Mix.????????????????100.0μl
Primer?Mix.????????????????30.0μl
AMV ThermoScript II 12.5U
Bst DNA polymerase 160U
Mending distilled water to final volume is 200.0 μ l
B. with Reaction Mix. mixing, divide to install to eight PCR tubules, every pipe 20 μ l
C. add the template that (1) step extracting goes out in the eight PCR tubules respectively, every pipe 5 μ l, each 5 μ l of positive reference substance and negative control product are used separately as positive control, negative control, mix
D. eight PCR tubules are put into real-time turbidimeter LA-200, set reaction conditions: 60 ℃, and 60 minutes
E. experiment finishes, and takes out eight PCR tubules, and preserves data
3. carry out LAMP HBV, HCV and HIV three amplifications or HCV and the amplification of HIV bigeminy according to the following step
Prepare Reaction Mix. (10 person-portion)
Master?Mix.?????????????100.0μl
Primer?Mix.(HBV)????????30.0μl
Primer?Mix.(HCV)????????30.0μl
Primer?Mix.(HIV)????????30.0μl
AMV ThermoScript II 12.5U
Bst DNA polymerase 160U
Mending distilled water to final volume is 200.0 μ l
When carrying out three joint inspections and surveying, all Primer Mix will join reaction system, but carry out HCV and HIV bigeminy when detecting, and do not add HBV Primer Mix
With Reaction Mix. mixing, divide to install to eight PCR tubules, every pipe 20 μ l
Add the template that (1) step extracting goes out in the eight PCR tubules respectively, every pipe 5 μ l, each 5 μ l of positive reference substance and negative control product are used separately as positive control, negative control, mix
Eight PCR tubules are put into real-time turbidimeter LA-200, set reaction conditions: 60 ℃, and 60 minutes
Experiment finishes, and takes out eight PCR tubules, and preserves data
(3) result judges
Nephelometry is adopted in the detection of amplified production of the present invention.Under the effect of Mg+, LAMP amplification and the long-chain nucleic acid molecule can be cross-linked with each other into flocks, and sedimentary amount increases with the increase of amplified production.Therefore the judgement of experimental result has following two kinds of methods:
Qualitative observation: after reaction finished, experimental result can be by the direct interpretation of visual inspection (accompanying drawing 1), can be with the direct result of determination of this method when not adding the internal reference quality control product in the reaction system.
Detect in real time: can by LA-200 with and supporting LA-200 Program Ver0.18 software, obtains the delta data of turbidity in the real-time reaction solution, the row image of going forward side by side processing, result of determination (accompanying drawing 2,3).When adding the internal reference quality control product in the reaction system, can only be with this method result of determination.
Description of drawings
Fig. 1 has shown when not adding the internal reference quality control product, naked eyes direct viewing turbidity under the UV-light.
When Fig. 2 has shown the inspection of HBV list, after adding the internal reference quality control product, by the real time data that LA-200 Program Ver0.18 software provides, the result who carries out image processing.Wherein, the sample of two dotted line representatives is the HBV DNA positive, and the sample of two solid line representatives is a HBV DNA feminine gender.
Fig. 3 has shown when HBV, HCV and HIV three joint inspections are surveyed, by the real time data that LA-200 Program Ver0.18 software provides, the result who carries out image processing.Wherein, sample Sl is positive, and sample S2 is positive, and all viral nucleic acids are all negative among the sample S3, and sample S4 is suspicious result, needs duplicate detection to confirm, sample S5 needs to detect again for detecting failure.
Embodiment
The application example of embodiment 1 HBV blood screening identification system working method
HBV blood screening identification system (50 person-portion), its composition comprises:
Reagent The Packing Unit preservation condition
The nucleic acid extraction agent Solution 1 4 ℃ of preservations of 300 μ l
Solution 2 4 ℃ of preservations of 400 μ l
Solution 3 4 ℃ of preservations of 500 μ l
LAMP reagent ??Master?Mix. 5ml-20 ℃ preservation
??Primer?Mix. 3ml-20 ℃ preservation
The DNA polymerase 2ml-20 ℃ preservation
Analysis software LA-200 Program Ver0.18 software
Concrete operation method is as follows:
(1) nucleic acid extracting
Carry out the extracting of HBV nucleic acid according to the following step
A. the Eppendorf tube that adds 300 μ l solution 1 to 1.5ml
B. add 100 μ l serum or blood plasma to centrifuge tube, and vortex vibrated 5 seconds
C. incubated at room (15-25 ℃) was boiled cool to room temperature 10 minutes after 10 minutes
D. add 400 μ l solution 2 to centrifuge tube, and vortex vibrated 5 seconds; 15, centrifugal 15 minutes of 000rpm, the careful suction removed supernatant
E. add 500 μ l solution 3 to centrifuge tube, and vortex vibrated 5 seconds; 15, centrifugal 5 minutes of 000rpm, the careful suction removed supernatant
F. air drying is 10 minutes, adds 5 μ l distilled waters to centrifuge tube, complete dissolution precipitation, and 4 ℃ of preservations are stand-by
(2) LAMP reaction
1. carry out HBV LAMP nucleic acid amplification (10 person-portion) according to the following step
A. prepare Reaction Mix.
Master?Mix.????????????100.0μl
Primer?Mix.????????????30.0μl
Distilled water 50.0 μ l
Bst?DNA?Polymerase????????20.0μl
Total?????????????????????200.0μl
B. with Reaction Mix. mixing, divide to install to eight PCR tubules, every pipe 20 μ l
C. add the template that (1) step extracting goes out in the eight PCR tubules respectively, every pipe 5 μ l, each 5 μ l of positive reference substance and negative control product are used separately as positive control, negative control, mix
D. eight PCR tubules are put into real-time turbidimeter LA-200, set reaction conditions: 60 ℃, and 60 minutes
Experiment finishes, and takes out eight PCR tubules, and preserves data
The result judges:
When not adding the internal reference quality control product, experimental result can the results are shown in accompanying drawing 1 by the direct interpretation of visual inspection; After adding the internal reference quality control product, also the real time data that can provide by LA-200 Program Ver0.18 software is carried out image processing, result of determination such as accompanying drawing 2.In the accompanying drawing 2, the sample of two red curve representatives is the HBV DNA positive, and the sample of two black curve representatives is a HBV DNA feminine gender.
Embodiment 2 HBV, HCV and HIV three blood screening identification system working method
One, viral blood screening identification system (50 person-portion), its composition comprises:
Reagent The Packing Unit preservation condition
The nucleic acid extraction agent Solution 1 4 ℃ of preservations of 300 μ l
Solution 2 4 ℃ of preservations of 400 μ l
Solution 3 4 ℃ of preservations of 500 μ l
LAMP reagent Master?Mix. 5ml-20 ℃ preservation
Primer?Mix. 3ml-20 ℃ preservation
The enzyme mixed solution 2ml-20 ℃ preservation
Analysis software LA-200 Program Ver0.18 software
Concrete operation method is as follows:
(1) nucleic acid extracting
Carry out HBV according to the following step, HCV and the extracting of HIV nucleic acid
The Eppendorf tube that adds 300 μ l solution 1 to 1.5ml
Add 100 μ l serum or blood plasma to centrifuge tube, and vortex vibrated 5 seconds
Incubated at room (15-25 ℃) 10 minutes
Add 400 μ l solution 2 to centrifuge tube, and vortex vibrated 5 seconds; 15, centrifugal 15 minutes of 000rpm, the careful suction removed supernatant
Add 500 μ l solution 3 to centrifuge tube, and vortex vibrated 5 seconds; 15, centrifugal 5 minutes of 000rpm, the careful suction removed supernatant
Air drying 10 minutes adds 5 μ l distilled waters to centrifuge tube, complete dissolution precipitation, and 4 ℃ of preservations are stand-by
(2) LAMP reaction
1. carry out HBV, HCV, HIV LAMP nucleic acid amplification (10 person-portion) according to the following step
A. prepare Reaction Mix.
Master?Mix.????????????100.0μl
Primer?Mix.????????????30.0μl
Distilled water 50.0 μ l
Enzyme cocktail buffer 20.0 μ l
Total??????????????????200.0μl
With Reaction Mix. mixing, divide to install to eight PCR tubules, every pipe 20 μ l
Add the template that (1) step extracting goes out in the eight PCR tubules respectively, every pipe 5 μ l, each 5 μ l of positive reference substance and negative control product are used separately as positive control, negative control, mix
Eight PCR tubules are put into real-time turbidimeter LA-200, set reaction conditions: 60 ℃, and 60 minutes
Experiment finishes, and takes out eight PCR tubules, and preserves data
The result judges:
Experimental result can be by the direct interpretation of visual inspection; Also the real time data that can provide by LA-200 Program Ver0.18 software is carried out image processing, and result of determination is seen accompanying drawing 3.The result: sample S1 is positive, and sample S2 is positive, and all viral nucleic acids are all negative among the sample S3, and sample S4 is suspicious result, needs duplicate detection to confirm, sample S5 needs to detect again for detecting failure.The introducing of internal reference quality control product has prevented the omission that the false negative result of similar sample S5 causes effectively.
Sequence table
<110〉Shanghai City Blood Center
<120〉based on the method for sceening viral nucleic acid of blood through that encircles the isothermal amplification technique that mediates
<160>179
<170>Patentln?version?3.1
<210>1
<211>42
<212>DNA
<213〉primer
<400>1
aggacaaacg?ggcaacatac?cttcttcatc?ctgctgctat?gc??????????????????42
<210>2
<211>42
<212>DNA
<213〉primer
<400>2
tccaggaaca?tcaaccacca?gcaggttcct?tgagcaggaa?tc??????????????????42
<210>3
<211>20
<212>DNA
<213〉primer
<400>3
gctatcgctg?gatgtgtctg???????????????????????????????????????????20
<210>4
<211>20
<212>DNA
<213〉primer
<400>4
acagcaacaa?gagggaaaca???????????????????????????????????????????20
<210>5
<211>24
<212>DNA
<213〉primer
<400>5
ccagaagaac?caacaagaag?atga??????????????????????????????????????24
<210>6
<211>42
<212>DNA
<213〉primer
<400>6
aggacaaacg?ggcaacatac?cttcttcatc?ctgctgctat?gc??????????????????42
<210>7
<211>42
<212>DNA
<213〉primer
<400>7
tccaggaaca?tcaaccacca?gcaggttcct?tgagcaggaa?tc??????????????????42
<210>8
<211>20
<212>DNA
<213〉primer
<400>8
gctatcgctg?gatgtgtctg???????????????????????????????????????????20
<210>9
<211>20
<212>DNA
<213〉primer
<400>9
acagcaacaa?gagggaaaca???????????????????????????????????????????20
<210>10
<211>23
<212>DNA
<213〉primer
<400>10
ggtagtccag?aagaaccaac?aag???????????????????????????????????????23
<210>11
<211>42
<212>DNA
<213〉primer
<400>11
gataaaacgc?cgcagacaca?tccccaacct?cttgtcctcc?aa?????????????????42
<210>12
<211>44
<212>DNA
<213〉primer
<400>12
cctgctgcta?tgcctcatct?tctgacaaac?gggcaacata?cctt???????????????44
<210>13
<211>20
<212>DNA
<213〉primer
<400>13
caaaattcgc?agtccccaac???????????????????????????????????????????20
<210>14
<211>19
<212>DNA
<213〉primer
<400>14
ggtggttgat?gttcctgga????????????????????????????????????????????19
<210>15
<211>19
<212>DNA
<213〉primer
<400>15
cagcgatagc?caggacaaa????????????????????????????????????????????19
<210>16
<211>20
<212>DNA
<213〉primer
<400>16
gttggttctt?ctggactacc???????????????????????????????????????????20
<210>17
<211>42
<212>DNA
<213〉primer
<400>17
gataaaacgc?cgcagacaca?tccccaacct?cttgtcctcc?aa??????????????????42
<210>18
<211>44
<212>DNA
<213〉primer
<400>18
cctgctgcta?tgcctcatct?tctgacaaac?gggcaacata?cctt????????????????44
<210>19
<211>20
<212>DNA
<213〉primer
<400>19
ccaaaattcg?cagtccccaa???????????????????????????????????????????20
<210>20
<211>18
<212>DNA
<213〉primer
<400>20
gcaggttttg?catggtcc?????????????????????????????????????????????18
<210>21
<211>18
<212>DNA
<213〉primer
<400>21
cagcgataac?caggacaa?????????????????????????????????????????????18
<210>22
<211>16
<212>DNA
<213〉primer
<400>22
tgttggttct?tctgga???????????????????????????????????????????????16
<210>23
<211>41
<212>DNA
<213〉primer
<400>23
gattggaggt?tggggactgc?gaattttcta?gggggagcac?c???????????????????41
<210>24
<211>42
<212>DNA
<213〉primer
<400>24
tggctatcgc?tggatgtgtc?tgatgaggca?tagcagcagg?at??????????????????42
<210>25
<211>20
<212>DNA
<213〉primer
<400>25
agagtctaga?ctcgtggtgg???????????????????????????????????????????20
<210>26
<211>20
<212>DNA
<213〉primer
<400>26
gggcaacata?ccttggtagt???????????????????????????????????????????20
<210>27
<211>41
<212>DNA
<213〉primer
<400>27
tgattggagg?ttggggactg?caattttcta?gggggagcac?c???????????????????41
<210>28
<211>42
<212>DNA
<213〉primer
<400>28
tggctatcgc?tggatgtgtc?tgatgaggca?tagcagcagg?at??????????????????42
<210>29
<211>20
<212>DNA
<213〉primer
<400>29
agagtctaga?ctcgtggtgg???????????????????????????????????????????20
<210>30
<211>20
<212>DNA
<213〉primer
<400>30
gggcaacata?ccttggtagt???????????????????????????????????????????20
<210>31
<211>42
<212>DNA
<213〉primer
<400>31
gtgattggag?gttggggact?gcaattttct?agggggagca?cc??????????????????42
<210>32
<211>42
<212>DNA
<213〉primer
<400>32
ggctatcgct?ggatgtgtct?gcatgaggca?tagcagcagg?at??????????????????42
<210>33
<211>20
<212>DNA
<213〉primer
<400>33
agagtctaga?ctcgtggtgg???????????????????????????????????????????20
<210>34
<211>20
<212>DNA
<213〉primer
<400>34
gggcaacata?ccttggtagt???????????????????????????????????????????20
<210>35
<211>20
<212>DNA
<213〉primer
<400>35
gaattttggc?caggacacgt???????????????????????????????????????????20
<210>36
<211>42
<212>DNA
<213〉primer
<400>36
aggacaaacg?ggcaacatac?cttcttcatc?ctgctgctat?gc??????????????????42
<210>37
<211>42
<212>DNA
<213〉primer
<400>37
tccaggaaca?tcaaccacca?gcaggttcct?tgagcaggaa?tc??????????????????42
<210>38
<211>20
<212>DNA
<213〉primer
<400>38
gctatcgctg?gatgtgtctg???????????????????????????????????????????20
<210>39
<211>20
<212>DNA
<213〉primer
<400>39
acagcaacaa?gagggaaaca???????????????????????????????????????????20
<210>40
<211>25
<212>DNA
<213〉primer
<400>40
gtccagaaga?accaacaaga?agatg?????????????????????????????????????25
<210>41
<211>42
<212>DNA
<213〉primer
<400>41
aggacaaacg?ggcaacatac?cttcttcatc?ctgctgctat?gc??????????????????42
<210>42
<211>42
<212>DNA
<213〉primer
<400>42
tccaggaaca?tcaaccacca?gcaggttcct?tgagcaggaa?tc??????????????????42
<210>43
<211>20
<212>DNA
<213〉primer
<400>43
gctatcgctg?gatgtgtctg???????????????????????????????????????????20
<210>44
<211>20
<212>DNA
<213〉primer
<400>44
acagcaacaa?gagggaaaca???????????????????????????????????????????20
<210>45
<211>23
<212>DNA
<213〉primer
<400>45
gtccagaaga?accaacaaga?aga???????????????????????????????????????23
<210>46
<211>42
<212>DNA
<213〉primer
<400>46
aggacaaacg?ggcaacatac?cttcttcatc?ctgctgctat?gc??????????????????42
<210>47
<211>42
<212>DNA
<213〉primer
<400>47
tccaggaaca?tcaaccacca?gcaggttcct?tgagcaggaa?tc??????????????????42
<210>48
<211>20
<212>DNA
<213〉primer
<400>48
gctatcgctg?gatgtgtctg???????????????????????????????????????????20
<210>49
<211>20
<212>DNA
<213〉primer
<400>49
acagcaacaa?gagggaaaca???????????????????????????????????????????20
<210>50
<211>25
<212>DNA
<213〉primer
<400>50
ggtagtccag?aagaaccaac?aagaa?????????????????????????????????????25
<210>51
<211>43
<212>DNA
<213〉primer
<400>51
ggttkatcca?agaaaggacc?cagtcgccat?agtggtctgc?gga?????????????????43
<210>52
<211>38
<212>DNA
<213〉primer
<400>52
ccgcaagact?gctagccgag?gcaagcaccc?tatcaggc???????????????????????38
<210>53
<211>22
<212>DNA
<213〉primer
<400>53
ggcgttagta?tgagtgtcgt?ac????????????????????????????????????????22
<210>54
<211>18
<212>DNA
<213〉primer
<400>54
catggtgcac?ggtctacg?????????????????????????????????????????????18
<210>55
<211>15
<212>DNA
<213〉primer
<400>55
ttgggttgcg?aaagg????????????????????????????????????????????????15
<210>56
<211>38
<212>DNA
<213〉primer
<400>56
caccctatca?ggcagtacca?agactgctag?ccgagtag???????????????????????38
<210>57
<211>39
<212>DNA
<213〉primer
<400>57
gggaggtctc?gtagaccgtc?gtttggtttt?tctttgagg??????????????????????39
<210>58
<211>22
<212>DNA
<213〉primer
<400>58
ggcgttagta?tgagtgtcgt?ac????????????????????????????????????????22
<210>59
<211>18
<212>DNA
<213〉primer
<400>59
ctccaccaac?gatctgac?????????????????????????????????????????????18
<210>60
<211>14
<212>DNA
<213〉primer
<400>60
caaggccttt?cgcg?????????????????????????????????????????????????14
<210>61
<211>19
<212>DNA
<213〉primer
<400>61
catgagcacg?aatcctaaa????????????????????????????????????????????19
<210>62
<211>38
<212>DNA
<213〉primer
<400>62
caccctatca?ggcagtacca?agactgctag?ccgagtag???????????????????????38
<210>63
<211>39
<212>DNA
<213〉primer
<400>63
gggaggtctc?gtagaccgtc?gtttggtttt?tctttgagg??????????????????????39
<210>64
<211>22
<212>DNA
<213〉primer
<400>64
ggcgttagta?tgagtgtcgt?ac????????????????????????????????????????22
<210>65
<211>18
<212>DNA
<213〉primer
<400>65
ctccaccaac?gatctgac?????????????????????????????????????????????18
<210>66
<211>13
<212>DNA
<213〉primer
<400>66
caaggccttt?cgc??????????????????????????????????????????????????13
<210>67
<211>19
<212>DNA
<213〉primer
<400>67
catgagcacg?aatcctaaa????????????????????????????????????????????19
<210>68
<211>40
<212>DNA
<213〉primer
<400>68
tggaggctgc?acgacactca?actgtcttca?cgcagaaagc?????????????????????40
<210>69
<211>40
<212>DNA
<213〉primer
<400>69
ggaaccggtg?agtacaccgg?cccaaatctc?caggcattga?????????????????????40
<210>70
<211>19
<212>DNA
<213〉primer
<400>70
cactcccctg?tgaggaact????????????????????????????????????????????19
<210>71
<211>18
<212>DNA
<213〉primer
<400>71
actcggctag?cagtctcg?????????????????????????????????????????????18
<210>72
<211>18
<212>DNA
<213〉primer
<400>72
aattgccagg?acgaccgg?????????????????????????????????????????????18
<210>73
<211>40
<212>DNA
<213〉primer
<400>73
tggaggctgc?acgacactca?actgtcttca?cgcagaaagc?????????????????????40
<210>74
<211>40
<212>DNA
<213〉primer
<400>74
ggaaccggtg?agtacaccgg?cccaaatctc?caggcattga?????????????????????40
<210>75
<211>19
<212>DNA
<213〉primer
<400>75
cactcccctg?tgaggaact????????????????????????????????????????????19
<210>76
<211>18
<212>DNA
<213〉primer
<400>76
actcggctag?cagtctcg?????????????????????????????????????????????18
<210>77
<211>20
<212>DNA
<213〉primer
<400>77
acgaccgggt?cctttcttgg???????????????????????????????????????????20
<210>78
<211>40
<212>DNA
<213〉primer
<400>78
tggaggctgc?acgacactca?actgtcttca?cgcagaaagc?????????????????????40
<210>79
<211>38
<212>DNA
<213〉primer
<400>79
cctcccggga?gagccatagt?gtcgtcctgg?caattccg???????????????????????38
<210>80
<211>19
<212>DNA
<213〉primer
<400>80
cactcccctg?tgaggaact????????????????????????????????????????????19
<210>81
<211>20
<212>DNA
<213〉primer
<400>81
cgggttgatc?caagaaagga???????????????????????????????????????????20
<210>82
<211>40
<212>DNA
<213〉primer
<400>82
tggaggctgc?acgacactca?actgtcttca?cgcagaaagc?????????????????????40
<210>83
<211>39
<212>DNA
<213〉primer
<400>83
ggaaccggtg?agtacaccgg?agcccaaatc?tccaggcat??????????????????????39
<210>84
<211>19
<212>DNA
<213〉primer
<400>84
cactcccctg?tgaggaact????????????????????????????????????????????19
<210>85
<211>18
<212>DNA
<213〉primer
<400>85
actcggctag?cagtctcg?????????????????????????????????????????????18
<210>86
<211>18
<212>DNA
<213〉primer
<400>86
gacgaccggg?tcctttct?????????????????????????????????????????????18
<210>87
<211>38
<212>DNA
<213〉primer
<400>87
actatggctc?tcccgggagg?acgcagaaag?cgtctagc???????????????????????38
<210>88
<211>40
<212>DNA
<213〉primer
<400>88
accggtgagt?acaccggaat?tggcacgccc?aaatctccag?????????????????????40
<210>89
<211>20
<212>DNA
<213〉primer
<400>89
cccctgtgag?gaactactgt???????????????????????????????????????????20
<210>90
<211>20
<212>DNA
<213〉primer
<400>90
acccaacact?actcggctag???????????????????????????????????????????20
<210>91
<211>21
<212>DNA
<213〉primer
<400>91
cacgacactc?atactaacgc?c?????????????????????????????????????????21
<210>92
<211>19
<212>DNA
<213〉primer
<400>92
aggacgaccg?ggtcctttc????????????????????????????????????????????19
<210>93
<211>38
<212>DNA
<213〉primer
<400>93
actcggctag?cagtctcgcg?accgggtcct?ttcttgga???????????????????????38
<210>94
<211>42
<212>DNA
<213〉primer
<400>94
aaaggccttg?tggtactgcc?tgggattcgt?actcatggtg?ca??????????????????42
<210>95
<211>19
<212>DNA
<213〉primer
<400>95
gagtacaccg?gaattgcca????????????????????????????????????????????19
<210>96
<211>20
<212>DNA
<213〉primer
<400>96
cggttggtgt?tacgtttggt???????????????????????????????????????????20
<210>97
<211>40
<212>DNA
<213〉primer
<400>97
gcctttcgcg?acccaacact?accctggaga?tttgggcgtg?????????????????????40
<210>98
<211>39
<212>DNA
<213〉primer
<400>98
cgggaggtct?cgtagaccgt?gcggttggtg?ttacgtttg??????????????????????39
<210>99
<211>19
<212>DNA
<213〉primer
<400>99
tggatcaacc?cgctcaatg????????????????????????????????????????????19
<210>100
<211>19
<212>DNA
<213〉primer
<400>100
ggaacttgac?gtcctgtgg????????????????????????????????????????????19
<210>101
<211>25
<212>DNA
<213〉primer
<400>101
gcaccatgag?tacgaatcct?aaacc?????????????????????????????????????25
<210>102
<211>46
<212>DNA
<213〉primer
<400>102
cgtaacacta?ggcaaaggtg?gcttctctac?aatacttggc?actagc??????????????46
<210>103
<211>43
<212>DNA
<213〉primer
<400>103
cccagaagac?caagggccac?cagcttcatt?cttaagctcc?tct?????????????????43
<210>104
<211>22
<212>DNA
<213〉primer
<400>104
agcaggacat?aacaaggtag?ga????????????????????????????????????????22
<210>105
<211>18
<212>DNA
<213〉primer
<400>105
gccatggagc?caaatcct?????????????????????????????????????????????18
<210>106
<211>25
<212>DNA
<213〉primer
<400>106
gccacacaat?gaatggacac?tagag?????????????????????????????????????25
<210>107
<211>47
<212>DNA
<213〉primer
<400>107
ccccaatccc?cccttttctt?ttaatgaaca?tcttaagaca?gcagtac?????????????47
<210>108
<211>46
<212>DNA
<213〉primer
<400>108
agtgcagggg?aaagaatagt?agacattgtc?cctgtaataa?acccga??????????????46
<210>109
<211>20
<212>DNA
<213〉primer
<400>109
ccccaaagtc?aaggagtagt???????????????????????????????????????????20
<210>110
<211>18
<212>DNA
<213〉primer
<400>110
tttgctggtc?ctttccaa?????????????????????????????????????????????18
<210>111
<211>17
<212>DNA
<213〉primer
<400>111
tggatgaata?ctgccat??????????????????????????????????????????????17
<210>112
<211>26
<212>DNA
<213〉primer
<400>112
aacagacata?caaactagag?aat?tac???????????????????????????????????26
<210>113
<211>40
<212>DNA
<213〉primer
<400>113
ccccaatccc?cccttttctt?agacagcagt?acaaatggca?????????????????????40
<210>114
<211>47
<212>DNA
<213〉primer
<400>114
agtgcagggg?aaagaatagt?agacgctgtc?cctgtaataa?acccgaa?????????????47
<210>115
<211>23
<212>DNA
<213〉primer
<400>115
ggtaagagat?caggctgaac?atc??????????????????????????????????????23
<210>116
<211>20
<212>DNA
<213〉primer
<400>116
gctggtcctt?tccaaagtgg???????????????????????????????????????????20
<210>117
<211>18
<212>DNA
<213〉primer
<400>117
ttaaaattgt?ggatgaat?????????????????????????????????????????????18
<210>118
<211>22
<212>DNA
<213〉primer
<400>118
gcaacagaca?tacaaactaa?ag????????????????????????????????????????22
<210>119
<211>40
<212>DNA
<213〉primer
<400>119
ccccaatccc?cccttttctt?agacagcagt?acaaatggca?????????????????????40
<210>120
<211>46
<212>DNA
<213〉primer
<400>120
agtgcagggg?aaagaatagt?agacctgctg?tccctgtaat?aaaccc??????????????46
<210>121
<211>23
<212>DNA
<213〉primer
<400>121
ggtaagagat?caggctgaac?atc???????????????????????????????????????23
<210>122
<211>20
<212>DNA
<213〉primer
<400>122
gctggtcctt?tccaaagtgg???????????????????????????????????????????20
<210>123
<211>18
<212>DNA
<213〉primer
<400>123
ttaaaattgt?ggatgaat?????????????????????????????????????????????18
<210>124
<211>22
<212>DNA
<213〉primer
<400>124
gcaacagaca?tacaaactaa?ag????????????????????????????????????????22
<210>125
<211>46
<212>DNA
<213〉primer
<400>125
cgtaacacta?ggcaaaggtg?gcttctctac?aatacttggc?actagc??????????????46
<210>126
<211>42
<212>DNA
<213〉primer
<400>126
ccagaagacc?aagggccaca?acagcttcat?tcttaagctc?ct??????????????????42
<210>127
<211>23
<212>DNA
<213〉primer
<400>127
ggtgtgaata?tcaagcagga?cat???????????????????????????????????????23
<210>128
<211>23
<212>DNA
<213〉primer
<400>128
gagccaaatc?ctaggaaaat?gtc???????????????????????????????????????23
<210>129
<211>24
<212>DNA
<213〉primer
<400>129
ccacacaatg?aatggacact?agag??????????????????????????????????????24
<210>130
<211>46
<212>DNA
<213〉primer
<400>130
cgtaacacta?ggcaaaggtg?gctctctaca?atacttggca?ctagca??????????????46
<210>131
<211>46
<212>DNA
<213〉primer
<400>131
agatggaaca?agccccagaa?gactctagtg?tccattcatt?gtgtgg??????????????46
<210>132
<211>22
<212>DNA
<213〉primer
<400>132
agcaggacat?aacaaggtag?ga????????????????????????????????????????22
<210>133
<211>23
<212>DNA
<213〉primer
<400>133
cagcttcatt?cttaagctcc?tct???????????????????????????????????????23
<210>134
<211>46
<212>DNA
<213〉primer
<400>134
cgtaacacta?ggcaaaggtg?gctctctaca?atacttggca?ctagca??????????????46
<210>135
<211>46
<212>DNA
<213〉primer
<400>135
agatggaaca?agccccagaa?gacctcctct?aaaagctcta?gtgtcc??????????????46
<210>136
<211>22
<212>DNA
<213〉primer
<400>136
ggtgtgaata?tcaagcagga?ca????????????????????????????????????????22
<210>137
<211>23
<212>DNA
<213〉primer
<400>137
gagccaaatc?ctaggaaaat?gtc???????????????????????????????????????23
<210>138
<211>46
<212>DNA
<213〉primer
<400>138
cgtaacacta?ggcaaaggtg?gcttctacaa?tacttggcac?tagcag??????????????46
<210>139
<211>46
<212>DNA
<213〉primer
<400>139
agatggaaca?agccccagaa?gactctagtg?tccattcatt?gtgtgg??????????????46
<210>140
<211>23
<212>DNA
<213〉primer
<400>140
gcaggacata?acaaggtagg?atc???????????????????????????????????????23
<210>141
<211>23
<212>DNA
<213〉primer
<400>141
cagcttcatt?cttaagctcc?tct???????????????????????????????????????23
<210>142
<211>45
<212>DNA
<213〉primer
<400>142
gtcttctggg?gcttgttcca?tctaaaagat?aaagccacct?ttgcc???????????????45
<210>143
<211>46
<212>DNA
<213〉primer
<400>143
gggagccaca?caatgaatgg?acagagccaa?atcctaggaa?aatgtc??????????????46
<210>144
<211>23
<212>DNA
<213〉primer
<400>144
gcactagcag?cat?taataac?acc??????????????????????????????????????23
<210>145
<211>22
<212>DNA
<213〉primer
<400>145
agatatgttg?ccctaagcca?tg????????????????????????????????????????22
<210>146
<211>25
<212>DNA
<213〉primer
<400>146
atcctctgtc?agtttcgtaa?cacta?????????????????????????????????????25
<210>147
<211>25
<212>DNA
<213〉primer
<400>147
gaggagctta?agaatgaagc?tgtta?????????????????????????????????????25
<210>148
<211>43
<212>DNA
<213〉primer
<400>148
gtcttctggg?gcttgttcca?tctagataaa?gccacctttg?cct?????????????????43
<210>149
<211>46
<212>DNA
<213〉primer
<400>149
gggagccaca?caatgaatgg?acagagccaa?atcctaggaa?aatgtc??????????????46
<210>150
<211>23
<212>DNA
<213〉primer
<400>150
gcactagcag?cattaataac?acc???????????????????????????????????????23
<210>151
<211>22
<212>DNA
<213〉primer
<400>151
agatatgttg?ccctaagcca?tg????????????????????????????????????????22
<210>152
<211>23
<212>DNA
<213〉primer
<400>152
tcctctgtca?gtttcgtaac?act???????????????????????????????????????23
<210>153
<211>25
<212>DNA
<213〉primer
<400>153
gaggagctta?agaatgaagc?tgtta?????????????????????????????????????25
<210>154
<211>42
<212>DNA
<213〉primer
<400>154
acgagcggct?tccatctttg?atacgactct?tttggccaaa?cc??????????????????42
<210>155
<211>42
<212>DNA
<213〉primer
<400>155
cacaatccgt?tgatgtcgct?gcaaagagcg?gtatccccat?ga??????????????????42
<210>156
<211>20
<212>DNA
<213〉primer
<400>156
cggagttgct?tcaatctgct???????????????????????????????????????????20
<210>157
<211>20
<212>DNA
<213〉primer
<400>157
gcgcatttct?ttgcaccatt???????????????????????????????????????????20
<210>158
<211>25
<212>DNA
<213〉primer
<400>158
agaagaagct?aataatgcga?tgtgg?????????????????????????????????????25
<210>159
<211>42
<212>DNA
<213〉primer
<400>159
acgagcggct?tccatctttg?atctcttttg?gccaaaccgt?ct??????????????????42
<210>160
<211>42
<212>DNA
<213〉primer
<400>160
cacaatccgt?tgatgtcgct?gccaaaagag?cggtatcccc?at??????????????????42
<210>161
<211>20
<212>DNA
<213〉primer
<400>161
cggagttgct?tcaatctgct???????????????????????????????????????????20
<210>162
<211>20
<212>DNA
<213〉primer
<400>162
gcgcatttct?ttgcaccatt???????????????????????????????????????????20
<210>163
<211>25
<212>DNA
<213〉primer
<400>163
agaagaagct?aataatgcga?tgtgg?????????????????????????????????????25
<210>164
<211>41
<212>DNA
<213〉primer
<400>164
acgagcggct?tccatctttg?atttggccaa?accgtctttc?a???????????????????41
<210>165
<211>39
<212>DNA
<213〉primer
<400>165
cacaatccgt?tgatgtcgct?gccaaaagag?cggtatccc??????????????????????39
<210>166
<211>20
<212>DNA
<213〉primer
<400>166
cggagttgct?tcaatctgct???????????????????????????????????????????20
<210>167
<211>20
<212>DNA
<213〉primer
<400>167
gcgcatttct?ttgcaccatt???????????????????????????????????????????20
<210>168
<211>25
<212>DNA
<213〉primer
<400>168
agaagaagct?aataatgcga?tgtgg?????????????????????????????????????25
<210>169
<211>42
<212>DNA
<213〉primer
<400>169
acgagcggct?tccatctttg?attcttttgg?ccaaaccgtc?tt??????????????????42
<210>170
<211>42
<212>DNA
<213〉primer
<400>170
cacaatccgt?tgatgtcgct?gcatcaaaag?agcggtatcc?cc??????????????????42
<210>171
<211>20
<212>DNA
<213〉primer
<400>171
cggagttgct?tcaatctgct???????????????????????????????????????????20
<210>172
<211>20
<212>DNA
<213〉primer
<400>172
gcgcatttct?ttgcaccatt???????????????????????????????????????????20
<210>173
<211>25
<212>DNA
<213〉primer
<400>173
agaagaagct?aataatgcga?tgtgg?????????????????????????????????????25
<210>174
<211>34
<212>DNA
<213〉primer
<400>174
taacgagcgg?cttccccaaa?ccgtctttca?ccac???????????????????????????34
<210>175
<211>34
<212>DNA
<213〉primer
<400>175
gcaacacaat?ccgttgaaag?agcggtatcc?ccat???????????????????????????34
<210>176
<211>20
<212>DNA
<213〉primer
<400>176
gctatctgca?tgaacgactc???????????????????????????????????????????20
<210>177
<211>18
<212>DNA
<213〉primer
<400>177
gcgcatttct?ttgcacca?????????????????????????????????????????????18
<210>178
<211>24
<212>DNA
<213〉primer
<400>178
gatttagaag?aagctaataa?tgcg??????????????????????????????????????24
<210>179
<211>22
<212>DNA
<213〉primer
<400>179
gtcgctgccc?aaattataaa?cc????????????????????????????????????????22

Claims (5)

1. viral nucleic acid detection method that is applied to blood screening, utilize the isothermal amplification technique LAMP of ring mediation to carry out, it is characterized in that, by using Auele Specific Primer, utilize the specific region of LMAP technology platform amplified target gene, assisting down of positive and negative Quality Control and internal reference detection architecture, blood disease is carried out nucleic acid screening or detection from molecular level.
2. the viral nucleic acid detection method that is used for blood screening according to claim 1 is characterized in that utilizing the particular target nucleotide sequence zone of LAMP technology amplification HBV, HCV, HIV and res-1.
3. the viral nucleic acid detection method that is used for blood screening according to claim 2, it is characterized in that in the described internal reference detection architecture, the internal reference quality control product is res-1 DNA or the RNA that is different from the amplicon virus target gene, and differentiates nephelometry duration of service and detect internal reference and viral target gene amplified production simultaneously.
4. according to claim 1,2,3 arbitrary described viral nucleic acid detection methods that are used for blood screening, it is characterized in that described Auele Specific Primer is selected from:
HBV primer: SEQ ID NO:1-SEQ ID NO:50;
HCV primer: SEQ ID NO:51-SEQ ID NO:101;
HIV primer: SEQ ID NO:102-SEQ ID NO:153;
Res-1 primer: SEQ ID NO:154-SEQ ID NO:179.
5. the viral nucleic acid detection method that is used for blood screening according to claim 4 is characterised in that HBV, HCV and duplex is carried out in the HIV merging or three joint inspections are surveyed.
CNB2005100245461A 2005-03-23 2005-03-23 Method for sceening viral nucleic acid of blood through isothermal amplification based on loop mediated technique Active CN100441698C (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CNB2005100245461A CN100441698C (en) 2005-03-23 2005-03-23 Method for sceening viral nucleic acid of blood through isothermal amplification based on loop mediated technique

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CNB2005100245461A CN100441698C (en) 2005-03-23 2005-03-23 Method for sceening viral nucleic acid of blood through isothermal amplification based on loop mediated technique

Publications (2)

Publication Number Publication Date
CN1687454A true CN1687454A (en) 2005-10-26
CN100441698C CN100441698C (en) 2008-12-10

Family

ID=35305496

Family Applications (1)

Application Number Title Priority Date Filing Date
CNB2005100245461A Active CN100441698C (en) 2005-03-23 2005-03-23 Method for sceening viral nucleic acid of blood through isothermal amplification based on loop mediated technique

Country Status (1)

Country Link
CN (1) CN100441698C (en)

Cited By (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101153342B (en) * 2007-09-21 2011-06-29 珠海市疾病预防控制中心 Primer group and detection reagent kit for detection of group A type G3 rotavirus
CN101591703B (en) * 2008-11-22 2011-11-02 中国水产科学研究院黄海水产研究所 Preservation method of loop-mediated isothermal amplification reaction reagent mixture
CN102236020A (en) * 2010-04-20 2011-11-09 上海新波生物技术有限公司 Hepatitis c virus antibody time-resolved fluoroimmunoassay and kit
CN101225440B (en) * 2007-12-03 2012-03-28 浙江大学 Detection method of leptospira
CN102703434A (en) * 2012-06-12 2012-10-03 中国水产科学研究院黄海水产研究所 Polymerase chain reaction reagent and preserving method for polymerase chain reaction reagent based on porous material
CN103060472A (en) * 2013-01-08 2013-04-24 成都市学忠农业发展有限公司 Hepatitis C virus loop-mediated isothermal amplification detection kit
CN101831489B (en) * 2009-03-11 2013-10-02 孙星江 Method for detecting desoxyribonucleic acid anti-counterfeiting maker by utilizing loop-mediated isothermal amplification technology
US8557523B2 (en) 2007-10-19 2013-10-15 Eiken Kagaku Kabushiki Kaisha Method of nucleic acid amplification and measuring reagent and reagent kit therefor
US8900807B2 (en) * 2008-02-25 2014-12-02 The United States Of America As Represented By The Secretary, Department Of Health And Human Services Composition and methods for rapid detection of HIV by loop-mediated isothermal amplification (LAMP)
CN104212919A (en) * 2014-09-28 2014-12-17 江苏省疾病预防控制中心 LAMP (Loop-Mediatedisothermal Amplification) primer combination for detecting HIV-1 virus and application of LAMP primer combination
CN104513786A (en) * 2014-12-26 2015-04-15 中国人民解放军第四军医大学 Bioreaction chip and application thereof to PCR
WO2015118491A1 (en) * 2014-02-06 2015-08-13 University Of The Witwatersrand, Johannesburg Method for detecting hiv
CN105647922A (en) * 2016-01-11 2016-06-08 中国人民解放军疾病预防控制所 Application of CRISPR-Cas9 system based on new gRNA (guide ribonucleic acid) sequence in preparing drugs for treating hepatitis B
CN112029829A (en) * 2019-07-23 2020-12-04 南京达伯可特生物科技有限公司 Nucleic acid isothermal amplification method based on hairpin structure and application of kit thereof

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2003219878A (en) * 2002-01-25 2003-08-05 Eiken Chem Co Ltd Primer for detection of legionella and detection method using the same
JP2004215520A (en) * 2003-01-10 2004-08-05 Eiken Chem Co Ltd Method for dialyzing tomato yellow leaf curl virus

Cited By (17)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101153342B (en) * 2007-09-21 2011-06-29 珠海市疾病预防控制中心 Primer group and detection reagent kit for detection of group A type G3 rotavirus
CN101903520B (en) * 2007-10-19 2013-11-13 荣研化学株式会社 Nucleic acid amplification method, and reagent and reagent kit for use in the method
US8557523B2 (en) 2007-10-19 2013-10-15 Eiken Kagaku Kabushiki Kaisha Method of nucleic acid amplification and measuring reagent and reagent kit therefor
CN101225440B (en) * 2007-12-03 2012-03-28 浙江大学 Detection method of leptospira
US8900807B2 (en) * 2008-02-25 2014-12-02 The United States Of America As Represented By The Secretary, Department Of Health And Human Services Composition and methods for rapid detection of HIV by loop-mediated isothermal amplification (LAMP)
CN101591703B (en) * 2008-11-22 2011-11-02 中国水产科学研究院黄海水产研究所 Preservation method of loop-mediated isothermal amplification reaction reagent mixture
CN101831489B (en) * 2009-03-11 2013-10-02 孙星江 Method for detecting desoxyribonucleic acid anti-counterfeiting maker by utilizing loop-mediated isothermal amplification technology
CN102236020A (en) * 2010-04-20 2011-11-09 上海新波生物技术有限公司 Hepatitis c virus antibody time-resolved fluoroimmunoassay and kit
CN102703434B (en) * 2012-06-12 2013-10-23 中国水产科学研究院黄海水产研究所 Polymerase chain reaction reagent and preserving method for polymerase chain reaction reagent based on porous material
CN102703434A (en) * 2012-06-12 2012-10-03 中国水产科学研究院黄海水产研究所 Polymerase chain reaction reagent and preserving method for polymerase chain reaction reagent based on porous material
CN103060472A (en) * 2013-01-08 2013-04-24 成都市学忠农业发展有限公司 Hepatitis C virus loop-mediated isothermal amplification detection kit
WO2015118491A1 (en) * 2014-02-06 2015-08-13 University Of The Witwatersrand, Johannesburg Method for detecting hiv
CN104212919A (en) * 2014-09-28 2014-12-17 江苏省疾病预防控制中心 LAMP (Loop-Mediatedisothermal Amplification) primer combination for detecting HIV-1 virus and application of LAMP primer combination
CN104513786A (en) * 2014-12-26 2015-04-15 中国人民解放军第四军医大学 Bioreaction chip and application thereof to PCR
CN105647922A (en) * 2016-01-11 2016-06-08 中国人民解放军疾病预防控制所 Application of CRISPR-Cas9 system based on new gRNA (guide ribonucleic acid) sequence in preparing drugs for treating hepatitis B
CN112029829A (en) * 2019-07-23 2020-12-04 南京达伯可特生物科技有限公司 Nucleic acid isothermal amplification method based on hairpin structure and application of kit thereof
CN112029829B (en) * 2019-07-23 2023-11-28 南京达伯可特生物科技有限公司 Nucleic acid isothermal amplification method based on hairpin structure and kit application thereof

Also Published As

Publication number Publication date
CN100441698C (en) 2008-12-10

Similar Documents

Publication Publication Date Title
CN1687454A (en) Method for sceening viral nucleic acid of blood through isothermal amplification based on loop mediated technique
CN101058833A (en) Primer system and method for detecting and analyzing avian influenza virus
CN1898395A (en) Method and kit for primer based amplification of nucleic acids
CN1948503A (en) Detection and parting method of human papillomavirus and reagent box
CN1497049A (en) Androgen receptor compound-associated protein
CN101074450A (en) Diagnostic probe detection system
CN101048515A (en) Nucleic acid analysis method
CN1890368A (en) Method of amplifying nucleic acid
CN1877328A (en) Method for detecting aquatic animal pathogenic bacteria by using 23S ribosome gene probe array
CN1612932A (en) Nucleic acid detection method and system thereof
CN101067149A (en) CYP3A detecting chip and its application
CN101045945A (en) Gene chip for detecting several kinds of common pathogenic bacteria and its prepn process and kit
CN1798842A (en) Nucleic acid detection
CN1616676A (en) Stable hybrid
CN1566131A (en) Small interference RNA molecule SiRNA capable of attacking human hepatitis B virus and application thereof
CN1216902C (en) SARS virus specific protein and clinical detection method and kit
CN1205340C (en) Transgenic agricultural product detection kit
CN1673368A (en) HCV regulated proteins
CN1276094C (en) DNA chip for diagnosing Mediterranean anemia and its prepn
CN1966726A (en) Method for assaying REG IV mRNA
CN100351374C (en) Oligonucleotides for detecting tubercle bacillus and method therefor
CN1186457C (en) Homogeneous genetic matrix
CN1606622A (en) Method of detecting and quantifying hemolysin-producing bacteria by overwhelmingly detecting and quantifying thermostable hemolysin-related genes tdh-related hemolysin genes of food poisoning bacteria
CN1285736C (en) Gene chip for diagnosing SARS coronary virus
CN1526111A (en) Polymorphic marker that can be used to assess the efficacy of interferon therapy

Legal Events

Date Code Title Description
C06 Publication
PB01 Publication
C10 Entry into substantive examination
SE01 Entry into force of request for substantive examination
C14 Grant of patent or utility model
GR01 Patent grant