CN116327796B - YTHDF1调控LINC00900 m6A甲基化对胶质瘤干细胞生长和自我更新的影响 - Google Patents
YTHDF1调控LINC00900 m6A甲基化对胶质瘤干细胞生长和自我更新的影响 Download PDFInfo
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Abstract
本发明公开了YTHDF1调控LINC00900m6A甲基化对胶质瘤干细胞生长和自我更新的影响,属于生物医药领域。本发明通过qRT‑PCR、westernblot、免疫组化、CCK‑8检测、Transwell检测、成球试验、siRNA技术、荧光素酶活性实验、RNApull‑dwon和RIP实验探究了胶质瘤组织中YTHDF1和LINC00900的关系,发现YTHDF1通过调控LINC00900稳定性,促进LINC00900的表达,进而影响胶质瘤细胞的增殖、侵袭和自我更新,并进一步探究了LINC00900通过调控miR‑1205/STAT3信号轴影响胶质瘤细胞的增殖、侵袭和自我更新。
Description
技术领域
本发明涉及YTHDF1调控LINC00900 m6A甲基化对胶质瘤干细胞生长和自我更新的影响,属于生物医药领域。
背景技术
胶质瘤是最常见的脑肿瘤之一。尽管采用了手术切除、放化疗等治疗手段,但是患者预后较差,主要原因是肿瘤复发和放化疗的耐药性。研究表明,胶质瘤的复发和耐药性与胶质瘤干细胞(glioma stem-like cells,GSCs)密切相关。因此,以GSC为研究对象,研究其在胶质瘤中的特点及功能,可以更深入的揭示胶质瘤的发生、发展以及复发的原因,为胶质瘤的治疗提供新的思路。
表观遗传学异常被认为是最重要的致癌机制之一。RNA甲基化是表观遗传学的重要研究领域。N6-甲基腺嘌呤(N6-methyladenosine,m6A)是RNA上最丰富的内部修饰,受到甲基转移酶、去甲基化酶动态可逆的调控,并且通过与m6A读取蛋白的结合影响RNA的加工和代谢过程,调控基因表达。m6ARNA甲基化修饰的异常与胶质瘤的发生发展密切相关。Cui等研究发现干扰METTL3或METTL14显著促进了GSCs的生长、自我更新和肿瘤发生,相反干扰去甲基酶FTO则显著抑制了GSCs生长和自我更新。Visvanathan等发现METTL3在GSCs中高表达,沉默METTL3可显著抑制GSCs细胞生长以及干细胞特异性基因SSEA1、胶质瘤重编程因子POU3F2、SOX2、SALL2和OLIG2的表达。ALKBH5是一种m6A去甲基酶,研究发现ALKBH5在GSCs中高表达,干扰ALKBH5可显著抑制GSCs的增殖,机制分析发现ALKBH5调控FOXM1转录本的去甲基化,导致FOXM1表达增强;还可通过下调DNA损伤应答基因CHK1等的表达,显著促进GSCs的放疗敏感性。以上研究表明,m6A甲基化在调控GSCs自我更新和放化疗敏感性中发挥重要作用。YTHDF1是介导m6A修饰的m6A结合蛋白,研究报道YTHDF1在胶质瘤组织中显著高表达,敲低YTHDF1可显著抑制GSCs的成球、侵袭和干细胞标志物CD133、NANOG、OCT4的表达。然而。YTHDF1调控GSCs自我更新和侵袭能力的分子机制尚不清楚。
长链非编码RNA(long non-coding RNA,lncRNA)是一类转录本长度超过200个核苷酸的RNA,无蛋白编码功能。研究表明,lncRNA可通过多种分子机制在肿瘤发生发展过程中发挥重要的调节作用。作为基因和蛋白调控的多面手,lncRNA上也有m6A修饰的形成。2012年Cell杂志的一篇文章在报道m6A检测技术获得突破的同时,还对不同RNA上的m6A修饰进行了分析,发现m6A不仅在mRNA上有分布,在lncRNA等非编码RNA上也大量存在。随后,越来越多的研究证实lncRNA上存在m6A修饰,且m6A可通过调节lncRNA的表达水平影响肿瘤的发生发展,如lncRNARP11、XIST、GAS5等。然而,目前人们对m6A调控lncRNA的机制认识还只是冰山一角,还有非常多的科学问题需要进一步的明确。
LINC00900是一个新发现的lncRNA,Wang等的研究发现LINC00900在胶质瘤中高表达,且发生了m6A甲基化修饰。我们采用m6A修饰位点预测网站SRAMP预测发现,LINC00900上存在多个m6A甲基化位点,其中预测结果显示high confidence和very high confidence的m6A结合位点就有9个,提示LINC00900受到m6A甲基化的调控。进一步采用m6A2Target数据库分析显示LINC00900可与YTHDF1直接结合,提示YTHDF1可通过调节LINC00900的m6A甲基化,影响LINC00900的表达水平。
发明内容
本发明的第一个目的是提供YTHDF1在制备LINC00900激动剂中的应用,所述YTHDF1的核苷酸序列如SEQ ID NO.1所示。
在一种实施方式中,所述激动剂用于调控LINC00900表达上调,同时促进LINC00900m6A甲基化。
本发明的第二个目的是提供LINC00900在制备miR-1205抑制剂中的应用,所述LINC00900的核苷酸序列如SEQ ID NO.2所示。
在一种实施方式中,所述抑制剂用于抑制miR-1205的表达。
本发明的第三个目的是提供LINC00900在制备STAT3激动剂中的应用,所述LINC00900的核苷酸序列如SEQ ID NO.2所示。
在一种实施方式中,所述激动剂用于上调STAT3的表达。
本发明的第四个目的是提供LINC00900在制备促进胶质瘤细胞进展的产品中的应用
在一种实施方式中,所述应用不以疾病的治疗和诊断为目的。
在一种实施方式中,所述LINC00900的核苷酸序列如SEQ ID NO.2所示。
在一种实施方式中,所述胶质瘤细胞进展包括胶质瘤细胞的增殖、侵袭和自我更新。
在一种实施方式中,所述产品包括试剂或试剂盒。
在一种实施方式中,所述试剂为固态或液态。
在一种实施方式中,所述试剂或试剂盒中,将LINC00900构建为过表达质粒或过表达慢病毒载体或敲除慢病毒载体或siRNA。
有益效果:
本发明通过qRT-PCR、western blot、免疫组化、CCK-8检测、Transwell检测、成球试验、siRNA技术、荧光素酶活性实验、RNApull-dwon和RIP实验探究了胶质瘤组织中YTHDF1和LINC00900的关系,发现YTHDF1通过调控LINC00900稳定性,促进LINC00900的表达,进而影响胶质瘤细胞的增殖、侵袭和自我更新,并进一步探究了LINC00900通过调控miR-1205/STAT3信号轴影响胶质瘤细胞的增殖、侵袭和自我更新。
附图说明
图1临床水平检测胶质瘤组织中YTHDF1和LINC00900的表达水平;A,qRT-PCR和检测YTHDF1和LINC00900的表达水平,B,western blot检测YTHDF1和LINC00900的表达水平,C,免疫组化检测YTHDF1的表达水平,D,MeRIP-PCR检测LINC00900的m6A甲基化水平。
图2体外研究YTHDF1对GSCs增殖、侵袭和自我更新的作用;A,qRT-PCR和westernblot检测4种细胞中YTHDF1的表达水平,B,干扰YTHDF1的表达水平,C,CCK-8检测过表达或干扰YTHDF1对GSCs增殖的影响,D,Transwell检测过表达或干扰YTHDF1对GSCs侵袭的影响,E,成球实验检测过表达或干扰YTHDF1对GSCs自我更新能力的影响。
图3探讨YTHDF1调控LINC00900的稳定性;A,采用qRT-PCR检测LINC00900的表达水平,B,RNApulldown和RIP证明GSC-87、GSC-251细胞中YTHDF1蛋白与LINC00900的直接结合,C,放线菌素D处理过表达YTHDF1细胞。
图4探讨YTHDF1通过调控LINC00900 m6A甲基化影响GSCs增殖、侵袭和自我更新;A,CCK-8检测干扰LINC00900对GSCs增殖的影响,B,Transwell检测干扰LINC00900对GSCs侵袭的影响,C,成球实验检测干扰LINC00900对GSCs自我更新能力的影响。
图5探讨LINC00900通过调控miR-1205/STAT3信号轴影响GSCs增殖、侵袭和自我更新;A,荧光素酶报告基因实验检测miR-1205mimic和LINC00900的表达水平,B,qRT-PCR和western blot检测miR-1205mimic和LINC00900的表达水平,C,qRT-PCR检测miR-1205mimic和LINC00900的表达水平对STAT3的影响,D,western blot检测miR-1205mimic和LINC00900的表达水平对STAT3的影响,E,CCK-8检测miR-1205mimic对LINC00900的影响,F,Transwell检测miR-1205mimic对LINC00900的影响,G,成球实验检测miR-1205mimic对LINC00900的影响。
具体实施方式
以下结合说明书附图和具体实施例来进一步说明本发明,但实施例并不对本发明做任何形式的限定。除非特别说明,本发明采用的试剂、方法和设备为本技术领域常规试剂、方法和设备。
下述实施例中涉及到的qRT-PCR、western blot、免疫组化、CCK-8检测、Transwell检测、成球试验、siRNA技术、荧光素酶活性实验、RNApull-dwon和RIP实验均为常规实验操作。
实施例1临床水平检测胶质瘤组织中YTHDF1和LINC00900的表达水平
收集约20例胶质瘤患者肿瘤组织和癌旁组织。
(1)采用qRT-PCR和western blot检测YTHDF1和LINC00900的表达水平。
首先以20例胶质瘤患者肿瘤组织和癌旁组织为模板,以Gapdh为内参,利用引物YTHDF1(human)-RT-F/YTHDF1(human)-RT-R为引物,通过qRT-PCR检测YTHDF1的表达水平。结果如图1A所示,相比于癌旁组织,在RNA水平上,胶质瘤患者肿瘤组织中的YTHDF1和LINC00900的表达水平显著升高;同样的,在蛋白水平上,胶质瘤患者肿瘤组织中的YTHDF1的表达水平显著高于癌旁组织(图1B)。
LINC00900(human)-RT-F:ATGTGTTTCTTTAGGATGAGAGGTG;
LINC00900(human)-RT-R:GAGTGTCTGTATTAGTTGTATTGGG;
YTHDF1(human)-RT-F:AAGTGGAAGGGGAAGTTTGATGT;
YTHDF1(human)-RT-R:ATGGAGGTTGTGTGCTTGTAGGA;
Gapdh(human)-RT-F:GGAGCGAGATCCCTCCAAAAT;
Gapdh(human)-RT-R:GGCTGTTGTCATACTTCTCATGG;
(2)免疫组化检测YTHDF1的表达水平
选取20例胶质瘤患者肿瘤组织和癌旁组织进行常规福尔马林固定、酒精脱水、石蜡包埋,切成4μm厚的切片,随后利用YTHDF1(proteintech)和小鼠二步法检测试剂盒(中杉金桥)进行免疫组化实验。
结果如图1C显示,YTHDF1在肿瘤组织中的表达水平略高于癌旁组织中的表达水平,与qRT-PCR和western blot检测结果一致。
(3)采用MeRIP-PCR检测LINC00900的m6A甲基化水平。
使用Magna m6ARNA甲基化免疫沉淀试剂盒,按照试剂盒说明书进行免疫沉淀实验。并qRT-PCR检测富集得到的RNA。
结果如图1D显示,胶质瘤组织中的LINC00900转录本富含m6A,提示胶质瘤组织中富含m6A的LINC00900转录本可能是其异常表达的原因之一。
以上结果说明,YTHDF1和LINC00900在胶质瘤组织中显著上调,而在胶质瘤组织中,LINC00900转录本中存在较高的m6A修饰水平。
实施例2体外研究YTHDF1对GSCs增殖、侵袭和自我更新的作用
体外培养人胶质瘤细胞系(U87、U251),分别分离胶质瘤干细胞(GSC-87、GSC-251)。用Neurobasal完全培养基(Neurobasal培养基、20ng/ml bFGF、20ng/ml EGF、1mg/ml肝素、100U/ml青霉素/链霉素)重悬人胶质瘤细胞系。将细胞密度调整到2×105/mL,加入一个新的细胞培养瓶中进行培养,每2-3天更换一次新的Neurobasal完全培养基。将胶质瘤肿瘤球直径增大至约150~200μm(约7天)后,收集胶质瘤肿瘤球,用活化酶消化液消化。收集单细胞悬液并进行传代培养。成功诱导U87和U251干细胞,得到GSC-U87和GSC-U251。
(1)采用qRT-PCR和western blot检测U87、U251、GSC-87、GSC-251中YTHDF1的表达水平。
结果如图2A显示,GSC-U87和GSC-U251细胞中YTHDF1的mRNA和蛋白水平显著高于U87和U251细胞。
(2)构建YTHDF1过表达载体(Lv-YTHDF1)及对照(Lv-NC),合成特异性敲低YTHDF1的shRNA(Lv-shRNA-1、Lv-shRNA-2和Lv-shRNA-3)及对照shRNA(Lv-sh-NC),并交由交由北京欧林格生物科技有限公司进行慢病毒的包装。
将YTHDF1的过表达慢病毒和干扰慢病毒分别转染GSC-87、GSC-251,得到过表达或干扰YTHDF1的细胞悬液。
结果如图2B所示,YTHDF1敲除慢病毒显著下调GSC-87和GSC-251细胞中YTHDF1的mRNA和蛋白水平,其中Lv-shRNA-2的敲除效率最好(Lv-shRNA-2的核苷酸序列为GTTCGTTACATCAGAAGGATA);YTHDF1过表达慢病毒显著上调GSC-87和GSC-251细胞中YTHDF1的mRNA和蛋白水平。
(3)采用CCK-8检测过表达或干扰YTHDF1对GSCs增殖的影响;
将过表达YTHDF1的细胞悬液或利用Lv-shRNA-2干扰YTHDF1的细胞悬液以2000个细胞/孔的密度加入到96孔板中。24h后,每孔中加入10μL CCK-8溶液。用分光光度计测量450nm波长处的吸光度值。
CCK8实验结果如图2C显示,过表达YTHDF1显著增加了GSC-87和GSC-251细胞的增殖,而干扰YTHDF1显著降低了GSC-87和GSC-251细胞的增殖。
(4)Transwell检测过表达或干扰YTHDF1对GSCs侵袭的影响;
收集过表达或干扰YTHDF1的细胞,加入Transwell的上腔室(含基质),在下腔室中加入含10%胎牛血清的Neurobasal培养基。将转孔细胞置于含5%二氧化碳的培养箱中,培养时间为37℃。24h后,弃置上腔室培养液,用40g/L多聚甲醛固定15分钟,PBS洗涤,结晶紫染色5分钟。用棉签轻轻擦拭腔室底膜上方的细胞。干燥后,将腔室置于光学显微镜下进行观察和计数。
Transwell实验结果如图2D显示,过表达YTHDF1显著提高了GSC-87和GSC-251细胞的侵袭能力,而干扰YTHDF1显著降低GSC-87和GSC-251细胞的侵袭能力。
(5)成球实验检测过表达或干扰YTHDF1对GSCs自我更新能力的影响。
将过表达或干扰YTHDF1的细胞接种在24孔板上,Neurobasal培养基中添加20mg/ml B27、20ng/ml EGF和20ng/ml bFGF。每周两次在Neurobasal培养基中加入EGF和bFGF。培养2~3周后,观察并计算每孔的球形成数。
肿瘤球形成实验结果如图2E显示,过表达YTHDF1显著提高了GSC-87和GSC-251细胞的肿瘤球形成能力,而干扰YTHDF1显著降低了GSC-87和GSC-251细胞的肿瘤球形成能力。
上述结果表明,过表达YTHDF1可促进GSCs的增殖、侵袭和自我更新。
实施例3探讨YTHDF1调控LINC00900的稳定性
(1)采用qRT-PCR检测LINC00900的表达水平。
结果如图3A显示,过表达YTHDF1的GSCs中LINC00900的表达水平升高,而敲除YTHDF1的GSCs中LINC00900的表达水平降低。
(2)RNApulldown和RIP证明GSC-87、GSC-251细胞中YTHDF1蛋白与LINC00900的直接结合。
RNApulldown:裂解过表达或敲除YTHDF1的GSCs细胞,离心收集上清。加入0.4μg生物素标记的RNA,然后加入0.5mLRIP缓冲液,37C孵育1h。加入50μL琼脂糖珠,室温孵育1h。用RIP缓冲液洗涤后,Western blot检测目的蛋白。
RIP:按照RIP试剂盒说明书进行。过表达或敲除YTHDF1的GSCs细胞被裂解,并与IgG或YTHDF1抗体一起孵育。提取并纯化RNA。最后,采用qRT-PCR检测目的基因的表达。
结果如图3B显示,采用RNA下拉实验和RIP实验证明了YTHDF1蛋白与LINC00900在GSCs细胞中的结合,RNA下拉结果显示,生物素标记的LINC00900(Bio-LINC00900)下拉复合物含有YTHDF1蛋白。同时,RIP实验结果进一步表明,在YTHDF1抗体下拉复合物中发现了LINC00900。
这些结果表明了LINC00900与YTHDF1之间的结合关系。
(3)采用放线菌素D(Actinomycin D)处理转染YTHDF1过表达载体及对照,或YTHDF1shRNA及对照shRNA的GSC-87、GSC-251。采用qRT-PCR检测处理不同时间(0、2、4、6h)LINC00900的表达水平,观察对LINC00900稳定性的影响。将感染了YTHDF1干扰慢病毒及对照慢病毒的GSC-87、GSC-251接种于6孔板中,在培养箱中培养24小时后,细胞融合率达到70%。用5μg/ml放线菌素D处理细胞,分别在0h、2h和4h检测LINC00900的表达水平。
结果如图3C显示,在YTHDF1敲除的GSCs细胞中,LINC00900的表达明显降低,表明YTHDF1可以通过调节其稳定性来影响LINC00900的表达。
实施例4探讨YTHDF1通过上调LINC00900表达影响GSCs增殖、侵袭和自我更新
合成特异性敲低LINC00900的siRNA及对照siRNA,并制备LINC00900的干扰慢病度(慢病毒交由北京欧林格生物科技有限公司合成)。将YTHDF1的过表达慢病毒分别感染GSC-87、GSC-251,随后感染LINC00900的干扰慢病度,得到过表达YTHDF1同时敲除LINC00900的细胞悬液。
表1LINC00900的siRNA的序列
ID | Target序列信息: |
si-LINC00900-1 | CCTGGCTAGTCAATCTTTATT |
si-LINC00900-2 | GAGGGTCCAAGGTTGTTATTT |
si-LINC00900-3 | GAGGTTACTGTGATGATTAAA |
CCK8结果显示,过表达YTHDF1促进了细胞的增殖能力,而敲除LINC00900则逆转了YTHDF1的增殖作用(图4A)。Transwell实验显示,敲除LINC00900逆转了YTHDF1对GSCs侵袭的影响(图4B)。肿瘤球形成实验显示,敲除LINC00900逆转了YTHDF1对GSCs肿瘤球形成的影响(图4C)。
以上结果说明,YTHDF1通过上调LINC00900的表达来促进GSCs的增殖、侵袭和自我更新。
实施例5探讨LINC00900通过调控miR-1205/STAT3信号轴影响GSCs增殖、侵袭和自我更新
(1)构建LINC00900或STAT33‘UTR野生型(WT)荧光素酶报告基因,并构建突变型(MUT)荧光素酶报告基因,使得miRNA与突变型荧光素酶报告基因无法结合。将荧光素酶报告基因与hsa-miR-1205mimic或对照NC分别在GSCs细胞中共转。采用双荧光素酶报告基因检测试剂盒检测各组荧光素酶的相对活性,验证miR-1205与LINC00900或STAT33’UTR之间的靶向关系。
荧光素酶报告基因实验证实了miR-1205和LINC00900之间的靶标结合关系,LINC00900与miR-1205直接结合(图5A)。进一步证实了,miR-1205与STAT33’UTR直接结合
(2)分别在GSC-87、GSC-251中感染LINC00900过表达慢病毒与对照慢病毒,或LINC00900干扰慢病度与对照干扰慢病度。采用qRT-PCR检测miR-1205的表达水平;采用qRT-PCR和western blot检测STAT3 mRNA和蛋白表达水平
结果如图5B所示,过表达LINC00900显著抑制miR-1205的表达,而敲除LINC00900上调了miR-1205的表达,表明LINC00900负调控miR-1205的表达。采用qRT-PCR和westernblot检测STAT3 mRNA和蛋白表达水平。过表达LINC00900显著上调了STAT3的表达,而敲除LINC00900抑制了STAT3的表达,说明LINC00900正向调控了STAT3的表达。
(3)分别在GSC-87、GSC-251中感染LINC00900过表达慢病毒的同时转染miR-1205mimic。同时在GSCs细胞中过表达LINC00900和miR-1205。结果如图5C和5D显示,miR-1205mimic可以逆转LINC00900对STAT3表达的上调。
(4)采用CCK-8检测对GSCs增殖的影响;Transwell检测对GSCs侵袭的影响;成球实验检测对GSCs自我更新能力的影响。
CCK8结果显示,过表达LINC00900促进了增殖能力,而miR-1205mimic逆转了LINC00900的增殖作用(图5E)。Transwell实验显示,miR-1205mimic逆转了LINC00900对GSCs侵袭的影响(图5F)。肿瘤球形成实验显示,miR-1205mimic逆转了LINC00900对GSCs肿瘤球形成的影响(图5G)。
以上结果证明,LINC00900通过调节miR-1205/STAT3信号轴,促进GSCs的增殖、侵袭和自我更新。
虽然本发明已以较佳实施例公开如上,但其并非用以限定本发明,任何熟悉此技术的人,在不脱离本发明的精神和范围内,都可做各种的改动与修饰,因此本发明的保护范围应该以权利要求书所界定的为准。
Claims (1)
1.YTHDF1在制备LINC00900激动剂中的应用,其特征在于,所述YTHDF1的核苷酸序列如SEQ ID NO.1所示,所述应用不以疾病的治疗为目的;
所述激动剂用于调控LINC00900表达上调,同时促进LINC00900m6A甲基化;
所述激动剂用于制备在细胞实验中促进LINC00900表达的试剂。
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