CN110331221A - Plasmodium gene diagnostic primers - Google Patents
Plasmodium gene diagnostic primers Download PDFInfo
- Publication number
- CN110331221A CN110331221A CN201910611312.9A CN201910611312A CN110331221A CN 110331221 A CN110331221 A CN 110331221A CN 201910611312 A CN201910611312 A CN 201910611312A CN 110331221 A CN110331221 A CN 110331221A
- Authority
- CN
- China
- Prior art keywords
- plasmodium
- seq
- nucleic acid
- acid sequence
- gene
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Granted
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6893—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for protozoa
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
- Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Analytical Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Biophysics (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Physics & Mathematics (AREA)
- Genetics & Genomics (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Tropical Medicine & Parasitology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
The present invention discloses a kind of plasmodium gene diagnostic primers, the primer is ring mediated isothermal amplification (LAMP) primer that whether there is specific Plasmodium and three kinds of plasmodiums in detection/identification sample, according to the present invention, use the primer sets, it simultaneously or separately can detect or identify the infection of one of Plasmodium and/or plasmodium falciparum, Plasmodium vivax, Plasmodium ovale or a variety of plasmodiums, the quality time can be won for the diagnosis and treatment of Chinese malaria, to realize that prevention and control and the elimination of malaria prevalence provide help.
Description
Technical field
The present invention relates to biological detections and identification field more particularly to one kind can quickly and correctly detect and identification malaria
The primer sets of protozoan infection include Plasmodium, malignant malaria, the primer sets of tertian fever and ovale malaria Infect And Diagnose.
Background technique
In the country of malaria prevalence, quickly and correctly Malaria Diagnosis is an arduous challenge.Different plasmodiums are drawn
The malaria clinical manifestation risen is different, and therapeutic scheme is different, and therefore, malaria diagnosis requires to be accurate to worm kind.
In China, many input-response relations infection are related to two or more worm kinds, these mixed infections often ignore or by
Underestimate.The failure of mixed infection detection causes malaria treatment insufficient, and may cause the exacerbation and serious complication of disease.
Therefore, it needs to develop a kind of feasible, easy, quick, highly sensitive and strong species specificity malaria diagnosis method.
Currently, the diagnostic method of clinically used malaria is the microscope inspection of blood film.If parasite density is very high, this
Kind Microscopical Method For Detection has relatively high sensitivity and specificity and can determine the stage of development of plasmodium kind and polypide.But it should
Comparison between detecting methods are cumbersome, heavy workload, and trained professional is needed to operate, especially low parasitemia densities, by controlling
Malaria diagnosis after treatment is very high to skills involved in the labour requirement, and the probability for mistaken diagnosis occur is big, especially logical in plasmodium density
Normal lower Endemic Area, mistaken diagnosis frequently result in the delay in treatment.The area that can not carry out is diagnosed in some standard tests, in order to
The speed and accuracy of malaria diagnosis are improved, researchers develop the malaria rapid diagnostic assay (RDT) based on immune response.
However, the sensitivity between product has fluctuation, and the product only to the species-specific diagnosis of plasmodium falciparum.Therefore, this
Situation can lead to the result or insecure kind of diagnosis of false negative.
Later, researcher developed the molecular biology method based on DNA cloning technology for malaria diagnosis, such as nest
Formula PCR and real-time quantitative PCR.Compared with microscope, these methods be proved to sensitivity with higher for mixed infection and
Preferable specificity.However, time-consuming for this diagnostic method, and it is expensive, need perfect experiment detection device and profession
Technical staff, to limit application of this technology in malaria endemic area, Basic medical and health institutions.
Ring mediated isothermal amplification method (Loop-mediated isothermal amplification, LAMP) is in recent years
A kind of constant temperature nucleic acid amplification technology that new development is got up.LAMP method is characterized in for six sections design on target dna chain
Then four different primers recycle strand replacement reaction to be reacted at a certain temperature.Reaction only need gene template,
Primer, strand displacement type DNA synzyme, matrix etc. are collectively disposed under certain temperature (60~65 DEG C), can be completed through a step.
Amplification efficiency is high, can realize 10 in 15 minutes to 1 hour9-1010Amplification again, achievees the effect that monitor.Therefore,
Expensive PCR instrument is not needed, only needs simple constant temperature facility such as water-bath that can complete.As a result interpretation can visually be seen
Examine turbidity fluorescent dye be perhaps added in the product observed by color change as a result, simple ultraviolet lamp or from
It is observed under right light, it is not necessary to additionally increase step.It has simple, quick, High sensitivity, high specificity, without special
Equipment, the feature of less demanding to template.These unique advantages receive it can more by numerous medical personnels, and be pushed away
Extensively.Suitable with PCR, the parasitemia densities of detection are lower.Requirement of this method for operator is low, can be complete without special training
At.
It is higher without sensibility, can be easily in development at the basic level application currently, domestic market is in addition to amynologic diagnostic method
Clinical quick diagnosis reagent kit.
Summary of the invention
To solve the above problems, needing to develop the plasmodium sense for meeting China's epidemic characteristic sensitive, special, easy to operate
Diagnostic method is contaminated, this method is different from other common malaria diagnosis methods such as Microscopical Method For Detection, immunology diagnosis method and PCR method.
The object of the present invention is to provide sensitive, efficient, easy to operate LAMP diagnostic primers, for determining in people's blood specimen
Whether have Infected With Plasmodium or determine whether for malignant malaria, tertian fever or ovale malaria three specific worm kinds it is any one or more of
Infection can win the quality time for the diagnosis and treatment of Chinese malaria endemic area, to realize that prevention and control and the elimination of malaria provide
It helps.
In order to solve the above problem, present invention application constant temperature nucleic acid amplification technology --- ring mediated isothermal amplification (LAMP) technology
Realize the purpose of hypersensitivity and specific detection Infected With Plasmodium.By searching for Plasmodium and plasmodium falciparum, every other day
Plasmodium, Plasmodium ovale high special, conservative gene nucleotide series, using relevant primer design software design primer,
And by manual analysis, experimental verification, the best primer sets for providing high degree of specificity and sensitivity are finally screened.Application invention
The plasmodium gene diagnostic primers group of people's design, can quickly, it is simple, accurately detected whether Plasmodium species parasites sense
Dye, and be capable of determining whether as a certain or a variety of parasitic infection in plasmodium falciparum, Plasmodium vivax, Plasmodium ovale.
That is, the present invention can provide the contents of the 1st to 6 description of subordinate.
1. plasmodium gene diagnostic primers for simultaneously or separately detect or identify Plasmodium and/or plasmodium falciparum,
The infection of one of Plasmodium vivax, Plasmodium ovale or a variety of plasmodiums;Plasmodium gene diagnostic primers are containing SEQ 1
The oligonucleotides group of the nucleic acid sequence indicated to 6, for expanding the specific region of Plasmodium mtDNA gene order;Contain SEQ
The oligonucleotides group of 7 to 12 nucleic acid sequences indicated, the specific region for expanding plasmodium protozoon ActinI gene order;Contain
The oligonucleotides group for the nucleic acid sequence for thering is SEQ 13 to 18 to indicate, for expanding the spy of Plasmodium vivax 18S rRNA gene order
Determine region;Oligonucleotides group containing the nucleic acid sequence indicated of SEQ19 to 24, for expanding Plasmodium ovale SSU rRNA gene
The specific region of sequence.
2. the purposes according to the 1st, detects using a primer sets or identifies the infection of Plasmodium, the primer
Group includes the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 1 to 6, for expanding Plasmodium mtDNA gene order
Specific region.
3. the purposes according to the 1st, is detected using a primer sets or identifies the infection of plasmodium falciparum, this draws
Object group includes the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 7 to 12, is used for expanding plasmodium protozoon ActinI gene
The specific region of sequence.
4. the purposes according to the 1st, is detected using a primer sets or identifies the infection of Plasmodium vivax, this draws
Object group includes the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 13 to 18, for expanding Plasmodium vivax 18S rRNA base
Because of the specific region of sequence.
5. the purposes according to the 1st, detects using a primer or identifies the infection of Plasmodium ovale, the primer
Group includes the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 19 to 24, for expanding Plasmodium ovale SSU rRNA gene
The specific region of sequence.
6, plasmodium gene diagnostic primers, the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 1 to 6;Contain SEQ 7
The oligonucleotides group of the nucleic acid sequence indicated to 12;Oligonucleotides group containing the nucleic acid sequence indicated of SEQ 13 to 18;Contain
The oligonucleotides group for the nucleic acid sequence that SEQ 19 to 24 is indicated.
Beneficial effects of the present invention
The present invention allows using LAMP primer group, and wherein the primer sets include to contain the nucleic acid sequence indicated of SEQ 1 to 6
Oligonucleotides group, for expanding the specific region of Plasmodium mtDNA gene order;The nucleic acid sequence indicated containing SEQ 7 to 12
The oligonucleotides group of column, the specific region for expanding plasmodium protozoon ActinI gene order;It is indicated containing SEQ 13 to 18
Nucleic acid sequence oligonucleotides group, for expanding the specific region of Plasmodium vivax 18S rRNA gene order;Contain SEQ
The oligonucleotides group of 19 to 24 nucleic acid sequences indicated, for expanding the given zone of Plasmodium ovale SSU rRNA gene order
Domain.To allow simultaneously or separately to detect or distinguish the presence or absence of one of anyone Infected With Plasmodium or three kinds of plasmodiums.
Using Plasmodium of the invention or detection/identification method of three kinds of plasmodiums, it is able to detect malaria infection patient
Use the therapeutic effect of malaria treatment drug.
Detailed description of the invention
Fig. 1 shows the position of LAMP target, Plasmodium (A:mtDNA), plasmodium falciparum (B:Pf ActinI),
Day plasmodium (C:Pv18SrRNA), the initiation site of Plasmodium ovale (D:Po SSU rRNA) and Plasmodium mtDNA base
Cause, plasmodium falciparum actin gene, Plasmodium vivax 18SrRNA gene, Plasmodium ovale SSU rRNA gene nucleotides sequence
Column, the position that primer sets cause site are indicated by an arrow.Wherein, gene nucleotide reference sequences are as follows: Plasmodium mtDNA
Gene includes plasmodium falciparum mtDNA gene (GenBank registration number M99416.1), Plasmodium vivax mtDNA gene
(GenBank registration number KF68441.1), Plasmodium ovale mtDNA gene (GenBank registration number HQ712052.1,
HQ712053.1), malariae mtDNA gene (GenBank registration number AB489194.1), Plasmodium knowlesi mtDNA gene
(GenBank registration number AY722797.1), plasmodium falciparum ActinI gene (GenBank registration number XM_001350811.1),
Plasmodium vivax 18SrRNA gene (GenBank registration number DQ162604.1), Plasmodium ovale SSU rRNA gene (GenBank
Registration number JF894405.1, JF894406.1).
Specific embodiment
The present invention will be described in further detail below with reference to the embodiments of the drawings.
Embodiment 1
It is compared by transferring related special, conservative gene sequence in GeneBank, chooses 200bp to 500bp
The conservative gene segment of length goes out multiple groups primer with LAMP Designer 1.15 (PREMIER Biosoft) software design,
By manually comparing, testing sieve select highest effect, sensitive primer sets.Sequence specific primers group includes containing 1 to 6 table of SEQ
The oligonucleotides group for the nucleic acid sequence shown, for expanding the specific region of Plasmodium mtDNA gene order;Containing SEQ 7 to
The oligonucleotides group of 12 nucleic acid sequences indicated, the specific region for expanding plasmodium protozoon ActinI gene order;Contain
The oligonucleotides group for the nucleic acid sequence that SEQ 13 to 18 is indicated, for expanding the specific of Plasmodium vivax 18S rRNA gene order
Region;Oligonucleotides group containing the nucleic acid sequence indicated of SEQ 19 to 24, for expanding Plasmodium ovale SSU rRNA gene
The specific region of sequence, is shown in Table 1 in detail.
1 sequence table of table
Serial number | Title | Primer sequence (5'to3') | Base number |
SEQ 1 | Mt-F3 | TGTCAACTACCATGTTACGAC | 21 |
SEQ 2 | Mt-B3 | AACGGTCCTAAGGTAGCAA | 19 |
SEQ 3 | Mt-FIP | TACGGCCCGACGGTAAGATCGTAACCATGCCAACAC | 36 |
SEQ 4 | Mt-BIP | AGGAGTCTCACACTAGCGACAAAATTCCTTGTCGGGTAATCTC | 43 |
SEQ 5 | Mt-LpF | CTGAGCACCTTAACTTCCCTAA | 22 |
SEQ 6 | Mt-LpB | TACACCGTTCATGCAGGAC | 19 |
SEQ 7 | Pfact1-F3 | GGAGAAGAAGATGTTCAAGC | 20 |
SEQ 8 | Pfact1-B3 | CCCAATTCGTAACAATACCATG | 22 |
SEQ 9 | Pfact1-FIP | AACGGAACGAGGTGCATCATTTGTTGACAACGGATCAGG | 39 |
SEQ 10 | Pfact1-BIP | AGTAGGAAGACCAAAGAATCCAGGATGTGCTTCATCACCAACAA | 44 |
SEQ 11 | Pfact1-LpF | CTCCTGCAACTCCTGCTT | 18 |
SEQ 12 | Pfact1-LpB | GTTGGTATGGAAGAGAAAGATGC | 23 |
SEQ 13 | PV18S-F3 | CTAATTAGCGGTAAGTACGACA | 22 |
SEQ 14 | PV18S-B3 | AGCCTAGTTCATCTAAGGACA | 21 |
SEQ 15 | PV18S-FIP | ACCAAACGCATCAGCTATTCGTATGTCGGATTGGATCTGGA | 41 |
SEQ 16 | PV18S-BIP | TTACTTGGCTTATCGTACCGTTCAGACCTGTTGTTGCCTT | 40 |
SEQ 17 | PV18S-LpF | CACCGACACGAAGTATAATTGC | 22 |
SEQ 18 | PV18S-LpB | GCTTCTTAGAGGAACGATGTGT | 22 |
SEQ 19 | P0ssu-F3 | CGAGTTTCTGACCTATCAGC | 20 |
SEQ 20 | P0ssu-B3 | GCTGGCACCAGACTTG | 16 |
SEQ 21 | P0ssu-FIP | GATGTGGTAGCTATTTCTCAGGCTCCCTAACATGGCTATGACGG | 44 |
SEQ 22 | P0ssu-BIP | GCAGCAGGCGCGTAAATTACAACCATGAAATGGCCTTGT | 39 |
SEQ 23 | P0ssu-LpF | TCTCCGGAATCGAACTCTAATTC | 23 |
SEQ 24 | P0ssu-LpB | TCTAAAGAAGAGAGGTAGTGACAAG | 25 |
Embodiment 2
The foundation of LAMP reaction system
1, material and method:
Between 2016 to 2018, to 466 malaria suspected case blood samples.Type strain 3D7, DD2, Plasmodium knowlesi
H plants of DNA of Strain (are provided) by MR4/ATCC (Manassas, VA).Toxoplasma, Schistosoma japonicum DNA are by Kunming Medical University
Helminth teaching and research room provides.
2, prepared by DNA profiling
Using Roche High Pure PCR Template Preparation Kit, insect-taking blood carries out DNA profiling system
It is standby.
Nest-type PRC reaction: primer and reaction condition with reference to delivered document (Sun Lingcong, Zhang Huaxun, Pei Sujian, Xia Jing,
Wu Dongni, Lin Wen: it examines the etiological diagnosis analysis world of Hubei Province's the first Introduced cases Plasmodium ovale wallikeri subspecies
Medical journal 2016,37:1956-1958.)
3, LAMP reacts
It the use of primer sets include the primer sets containing SEQ 1 to 6;The primer sets of SEQ 7 to 12;The primer of SEQ 13 to 18
Group;The primer sets of SEQ 19 to 24, using LAMP shown in reaction system such as table 2.The position of each primer and nucleotide sequence are aobvious
Show in Fig. 1.
Table 2. uses LAMP reaction system
4, amplified reaction
Prepared 12.5 μ L reaction system is placed in PCR instrument or metal bath, the constant temperature 45min at 63 DEG C, then
5min makes enzyme-deactivating to terminate reaction at 80 DEG C.
5, it detects
After amplified reaction, reaction tube is placed in ultraviolet lamp and is observed.If being issued as positive control
Green fluorescence is then judged as positive (+), if not issuing fluorescence as negative control, is judged as negative (-).
Embodiment 3
Specific test
Other kind of helminth and different plasmodium kinds are tested, its specificity is analyzed.Use the primer of SEQ 1 to 6
Group;The primer sets of SEQ 7 to 12;The primer sets of SEQ 13 to 18;The primer sets of SEQ 19 to 24 are respectively to Schistosoma japonicum, bow
Shape worm DNA carries out LAMP reaction, and result is feminine gender.Use the primer sets of SEQ1 to 6;The primer sets of SEQ 7 to 12;SEQ 13 to
18 primer sets;The primer sets of SEQ 19 to 24 are respectively to five kinds of plasmodium plasmodium falciparums (Pf), Plasmodium vivax (Pv), ovum
Shape plasmodium includes Plasmodium ovale curtisi (Poc) and Plasmodium ovale wallikeri (Pow) two
A subspecies, malariae (Pm), the DNA of Plasmodium knowlesi (Pk) carries out LAMP reaction, as a result as follows:
Plasmodium mtDNA gene
Toxoplasma, Schistosoma japonicum can not be expanded comprising the primer sets containing SEQ 1 to 6, to Plasmodium vivax, oval
Plasmodium, malariae, Plasmodium knowlesi and plasmodium falciparum are effective.
Plasmodium falciparum ActinI gene
Comprising the primer sets containing SEQ 7 to 12 to toxoplasma, Schistosoma japonicum, Plasmodium vivax, Plasmodium ovale, three
Day plasmodium, Plasmodium knowlesi can not expand, only effective to plasmodium falciparum.
Plasmodium vivax 18S rRNA gene
Comprising the primer sets containing SEQ 13 to 18 to toxoplasma, Schistosoma japonicum, Plasmodium ovale, malariae,
Plasmodium knowlesi and plasmodium falciparum can not expand, only effective to Plasmodium vivax.
Plasmodium ovale SSU rRNA gene
Comprising the primer sets containing SEQ 19 to 24 to toxoplasma, Schistosoma japonicum, Plasmodium vivax, malariae,
Plasmodium knowlesi and plasmodium falciparum can not expand, only effective to Plasmodium ovale.
Embodiment 4
Sensitivity tests
Protozoon counting is carried out to clinical sample, DNA is extracted and dilution, when parasitemia densities are 3.8 (2.0-7.0)
It the use of the primer sets of SEQ 1 to 6 is the positive to the LAMP reaction result of five kinds of plasmodiums when Parasites/ μ L;Use SEQ 7
Primer sets to 12 are the positive to the LAMP reaction result of plasmodium falciparum;Using the primer sets of SEQ 13 to 18 to tertian fever original
The LAMP reaction result of worm is the positive;The primer sets of SEQ 19 to 24 are the positive to the LAMP reaction result of Plasmodium ovale.
It constructs plasmid and converts Escherichia coli, DNA is extracted, by 109-101Doubling dilution, at the same carry out Nested-PCR with
LAMP test, compares the detectable limit difference of two methods, analyzes its sensibility.As a result as follows:
Plasmodium mtDNA gene
It is tested using plasmid, the detectable limit of LAMP can achieve 102Copy/ μ L, and Nested-PCR can only reach
To 104copy/μL。
Plasmodium falciparum ActinI gene
It is tested using plasmid, the detectable limit of LAMP can achieve 102Copy/ μ L, and Nested-PCR can only reach
To 103copy/μL。
It is tested using malaria disease human blood sample, the detectable limit that Nested-PCR is reacted with LAMP is close, LAMP reaction
It can reach 2.9 (95%CI 1.4-6.0) plasmodium/μ L blood.
Plasmodium vivax 18S rRNA gene
It is tested using plasmid, the detectable limit of LAMP can achieve 102Copy/ μ L, and Nested-PCR can only reach
To 104copy/μL。
Plasmodium ovale SSU rRNA gene
It is tested using plasmid, the detectable limit of LAMP can achieve 103Copy/ μ L, and Nested-PCR can only reach
To 104copy/μL。
The above results prove that the sensibility that our primer sets can monitor Infected With Plasmodium is higher than Nested-PCR.
Clinical sample
DNA extraction is carried out to malaria patient suspected's sample, while carrying out Nested-PCR and LAMP and testing.With clinical microscopy
As a result laboratory standard Nested-PCR result generally acknowledged and at present compares, susceptibility, the specificity of analysis primer LAMP reaction
Deng.
Patient's sample test result is as follows:
Plasmodium mtDNA gene
275 clinical malaria patient suspected's samples, nest-type PRC detect 237 malaria infections, the LAMP reaction of this group of primer
Detection is also 237, as a result completely the same.
Plasmodium falciparum ActinI gene
466 clinical malaria patient suspected's sample nest-type PRCs detect 251 falciparum infections, this group of primer
LAMP reaction 253 falciparum infections of detection, only 2 results are inconsistent.This 2 patients, control by clinical diagnostic
It treats, makes a definite diagnosis malaria.
Plasmodium vivax 18S rRNA gene
273 clinical malaria patient suspected's sample nest-type PRCs detect 87 plasmodium vivax infections, the LAMP of this group of primer
Reaction detection is also 87 plasmodium vivax infections, as a result completely the same.
Plasmodium ovale SSU rRNA gene
274 clinical malaria patient suspected's sample nest-type PRCs detect 58 Plasmodium ovale infection, the LAMP of this group of primer
Reaction detection is 57 Plasmodium ovale infection, and as a result only 1 sample is inconsistent.
The primer for detecting/identifying Plasmodium and three kinds of plasmodiums using LAMP of the present inventor's research and development is more micro-
Microscopy has higher sensitivity and higher specificity, and can more easily detect/reflect within a short period of time compared with PCR
Determine the plasmodium in patient's blood sample.It include the primer sets containing SEQ 1 to 6 in embodiment 3, only to the effective of Plasmodium;Packet
It is only effective to plasmodium falciparum containing the primer sets containing SEQ 7 to 12;Comprising the primer sets containing SEQ 13 to 18 only to every other day
Plasmodium is effective;It is only to Plasmodium ovale effective comprising the primer sets containing SEQ 19 to 24, it was demonstrated that its specificity;Work as protozoon
When density is lower, primer sets of the invention can also be detected, and be tested using plasmid, and the detectable limit of LAMP is higher than
Nested-PCR。
In conclusion the primer sets according to the present invention for being used to detect Plasmodium and plasmodium kind, and use the primer
Group separately or concurrently detects or identifies Plasmodium, plasmodium falciparum, Plasmodium vivax, malariae and Plasmodium ovale
Method can carry out DNA amplification reaction by quick, easy and cheap water bath with thermostatic control especially in malaria endemic area so that
A large amount of samples can be handled with cheap price.LAMP plasmodium detection primer group reaches the diagnosis requirement of clinical malaria, can drop
Low its diagnoses cost, provides a new diagnostic method for clinical malaria.
SEQUENCE LISTING
<110>Kunming Medical University
<120>plasmodium gene diagnostic primers
<130> 20190612
<160> 24
<170> PatentIn version 3.5
<210> 1
<211> 21
<212> DNA
<213>artificial synthesized
<400> 1
tgtcaactac catgttacga c 21
<210> 2
<211> 19
<212> DNA
<213>artificial synthesized
<400> 2
aacggtccta aggtagcaa 19
<210> 3
<211> 36
<212> DNA
<213>artificial synthesized
<400> 3
tacggcccga cggtaagatc gtaaccatgc caacac 36
<210> 4
<211> 43
<212> DNA
<213>artificial synthesized
<400> 4
aggagtctca cactagcgac aaaattcctt gtcgggtaat ctc 43
<210> 5
<211> 22
<212> DNA
<213>artificial synthesized
<400> 5
ctgagcacct taacttccct aa 22
<210> 6
<211> 19
<212> DNA
<213>artificial synthesized
<400> 6
tacaccgttc atgcaggac 19
<210> 7
<211> 20
<212> DNA
<213>artificial synthesized
<400> 7
ggagaagaag atgttcaagc 20
<210> 8
<211> 22
<212> DNA
<213>artificial synthesized
<400> 8
cccaattcgt aacaatacca tg 22
<210> 9
<211> 39
<212> DNA
<213>artificial synthesized
<400> 9
aacggaacga ggtgcatcat ttgttgacaa cggatcagg 39
<210> 10
<211> 44
<212> DNA
<213>artificial synthesized
<400> 10
agtaggaaga ccaaagaatc caggatgtgc ttcatcacca acaa 44
<210> 11
<211> 18
<212> DNA
<213>artificial synthesized
<400> 11
ctcctgcaac tcctgctt 18
<210> 12
<211> 23
<212> DNA
<213>artificial synthesized
<400> 12
gttggtatgg aagagaaaga tgc 23
<210> 13
<211> 22
<212> DNA
<213>artificial synthesized
<400> 13
ctaattagcg gtaagtacga ca 22
<210> 14
<211> 21
<212> DNA
<213>artificial synthesized
<400> 14
agcctagttc atctaaggac a 21
<210> 15
<211> 41
<212> DNA
<213>artificial synthesized
<400> 15
accaaacgca tcagctattc gtatgtcgga ttggatctgg a 41
<210> 16
<211> 40
<212> DNA
<213>artificial synthesized
<400> 16
ttacttggct tatcgtaccg ttcagacctg ttgttgcctt 40
<210> 17
<211> 22
<212> DNA
<213>artificial synthesized
<400> 17
caccgacacg aagtataatt gc 22
<210> 18
<211> 22
<212> DNA
<213>artificial synthesized
<400> 18
gcttcttaga ggaacgatgt gt 22
<210> 19
<211> 20
<212> DNA
<213>artificial synthesized
<400> 19
cgagtttctg acctatcagc 20
<210> 20
<211> 16
<212> DNA
<213>artificial synthesized
<400> 20
gctggcacca gacttg 16
<210> 21
<211> 44
<212> DNA
<213>artificial synthesized
<400> 21
gatgtggtag ctatttctca ggctccctaa catggctatg acgg 44
<210> 22
<211> 39
<212> DNA
<213>artificial synthesized
<400> 22
gcagcaggcg cgtaaattac aaccatgaaa tggccttgt 39
<210> 23
<211> 23
<212> DNA
<213>artificial synthesized
<400> 23
tctccggaat cgaactctaa ttc 23
<210> 24
<211> 25
<212> DNA
<213>artificial synthesized
<400> 24
tctaaagaag agaggtagtg acaag 25
Claims (6)
1. plasmodium gene diagnostic primers be used to or be respectively used to simultaneously detect or identify Plasmodium and/or plasmodium falciparum,
The infection of one of Plasmodium vivax, Plasmodium ovale or a variety of plasmodiums;The primer is indicated containing SEQ 1 to 6
The oligonucleotides group of nucleic acid sequence, for expanding the specific region of Plasmodium mtDNA gene order;Contain 7 to 12 table of SEQ
The oligonucleotides group for the nucleic acid sequence shown, the specific region for expanding plasmodium protozoon ActinI gene order;Contain SEQ
The oligonucleotides group of 13 to 18 nucleic acid sequences indicated, for expanding the given zone of Plasmodium vivax 18S rRNA gene order
Domain;Oligonucleotides group containing the nucleic acid sequence indicated of SEQ 19 to 24, for expanding Plasmodium ovale SSU rRNA gene sequence
The specific region of column.
2. plasmodium gene diagnostic primers purposes according to claim 1 detects using primer sets or identifies Plasmodium
Infection, the primer sets include the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 1 to 6, for expanding Plasmodium
The specific region of mtDNA gene order.
3. plasmodium gene diagnostic primers purposes according to claim 1 detects using primer sets or identifies malignant malaria original
The infection of worm, which includes the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 7 to 12, former for expanding plasmodium
The specific region of worm ActinI gene order.
4. plasmodium gene diagnostic primers purposes according to claim 1 detects using primer sets or identifies tertian fever original
The infection of worm, which includes the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 13 to 18, for expanding tertian fever
The specific region of protozoon 18S rRNA gene order.
5. plasmodium gene diagnostic primers purposes according to claim 1 detects using primer sets or identifies ovale malaria original
The infection of worm, which includes the oligonucleotides group containing the nucleic acid sequence indicated of SEQ 19 to 24, for expanding ovale malaria
The specific region of protozoon SSU rRNA gene order.
6. plasmodium gene diagnostic primers, it is characterised in that: the primer is the widow containing the nucleic acid sequence indicated of SEQ 1 to 6
Nucleotide group;Oligonucleotides group containing the nucleic acid sequence indicated of SEQ 7 to 12;The nucleic acid sequence indicated containing SEQ 13 to 18
Oligonucleotides group;Oligonucleotides group containing the nucleic acid sequence indicated of SEQ 19 to 24.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201910611312.9A CN110331221B (en) | 2019-08-19 | 2019-08-19 | Plasmodium gene diagnosis primer |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201910611312.9A CN110331221B (en) | 2019-08-19 | 2019-08-19 | Plasmodium gene diagnosis primer |
Publications (2)
Publication Number | Publication Date |
---|---|
CN110331221A true CN110331221A (en) | 2019-10-15 |
CN110331221B CN110331221B (en) | 2023-05-02 |
Family
ID=68143252
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201910611312.9A Active CN110331221B (en) | 2019-08-19 | 2019-08-19 | Plasmodium gene diagnosis primer |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN110331221B (en) |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111363838A (en) * | 2020-05-08 | 2020-07-03 | 北京师范大学 | Method for quantitatively detecting blood spore worms |
CN111926096A (en) * | 2020-08-21 | 2020-11-13 | 江南大学 | Method for detecting plasmodium ovale infection by utilizing PCR (polymerase chain reaction) technology |
Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN101688242A (en) * | 2007-05-28 | 2010-03-31 | 国立大学法人爱媛大学 | primers for detecting plasmodium |
CN102010910A (en) * | 2010-11-23 | 2011-04-13 | 中华人民共和国徐州出入境检验检疫局 | Loop-mediated isothermal amplification technology-based plasmodium genus and species nucleic acid screening method |
KR20110090004A (en) * | 2010-02-02 | 2011-08-10 | 주식회사 맥스바이오텍 | Primemrs and methods for detecting plasmodium vivax and plasmodium falciparum causing malaria, and detection kit thereof |
KR101847422B1 (en) * | 2017-02-24 | 2018-04-11 | 대한민국 | Composition for diagnosing malaria infection using LAMP and uses thereof |
WO2018181703A1 (en) * | 2017-03-31 | 2018-10-04 | 国立大学法人東北大学 | Multiplex detection method for 5 types of malarial parasite |
KR20190083218A (en) * | 2018-01-03 | 2019-07-11 | 주식회사 창 헬스케어 | Primer for amplifying the gene of malaria protozoa for the diagnosis of infections of malaria protozoa and detection method of malaria protozoa using the same |
-
2019
- 2019-08-19 CN CN201910611312.9A patent/CN110331221B/en active Active
Patent Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN101688242A (en) * | 2007-05-28 | 2010-03-31 | 国立大学法人爱媛大学 | primers for detecting plasmodium |
KR20110090004A (en) * | 2010-02-02 | 2011-08-10 | 주식회사 맥스바이오텍 | Primemrs and methods for detecting plasmodium vivax and plasmodium falciparum causing malaria, and detection kit thereof |
CN102010910A (en) * | 2010-11-23 | 2011-04-13 | 中华人民共和国徐州出入境检验检疫局 | Loop-mediated isothermal amplification technology-based plasmodium genus and species nucleic acid screening method |
KR101847422B1 (en) * | 2017-02-24 | 2018-04-11 | 대한민국 | Composition for diagnosing malaria infection using LAMP and uses thereof |
WO2018181703A1 (en) * | 2017-03-31 | 2018-10-04 | 国立大学法人東北大学 | Multiplex detection method for 5 types of malarial parasite |
KR20190083218A (en) * | 2018-01-03 | 2019-07-11 | 주식회사 창 헬스케어 | Primer for amplifying the gene of malaria protozoa for the diagnosis of infections of malaria protozoa and detection method of malaria protozoa using the same |
Non-Patent Citations (2)
Title |
---|
姜素华等: "套式PCR扩增特定SSU rRNA基因片段检测四川疟原虫感染的研究", 《实用寄生虫病杂志》 * |
易海华等: "应用LAMP技术对4种疟原虫进行属种鉴定的初步研究", 《中国媒介生物学及控制杂志》 * |
Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111363838A (en) * | 2020-05-08 | 2020-07-03 | 北京师范大学 | Method for quantitatively detecting blood spore worms |
CN111926096A (en) * | 2020-08-21 | 2020-11-13 | 江南大学 | Method for detecting plasmodium ovale infection by utilizing PCR (polymerase chain reaction) technology |
CN111926096B (en) * | 2020-08-21 | 2022-01-11 | 江南大学 | Method for detecting plasmodium ovale infection by utilizing PCR (polymerase chain reaction) technology |
Also Published As
Publication number | Publication date |
---|---|
CN110331221B (en) | 2023-05-02 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Fitri et al. | Malaria diagnostic update: From conventional to advanced method | |
US9200332B1 (en) | Primers for detecting plasmodium | |
Scopel et al. | High prevalence of Plamodium malariae infections in a Brazilian Amazon endemic area (Apiacás—Mato Grosso State) as detected by polymerase chain reaction | |
CN109055502A (en) | A kind of detection method of invasive infections with fungi, detection kit and application | |
CN102002531A (en) | Toxoplasma gondii detection kit and application thereof | |
CN106434996A (en) | Kit and method for detecting Acinetobacter baumannii DNA | |
CN110331221A (en) | Plasmodium gene diagnostic primers | |
CN114540526A (en) | Primer, probe and method for typing detection of five input plasmodium | |
KR20090100950A (en) | Method for detection brucellosis using real time pcr | |
CN105695601B (en) | Chimeric primers multiplex PCR molecular detection kit and its detection method of the malaria kind with inspection | |
CN106939359A (en) | A kind of LAMP methods detect the primer sets and detection architecture of the common hypotypes of HPV | |
Wu et al. | Rapid and visual detection of Toxoplasma gondii in blood samples from pet cats and dogs by loop-mediated isothermal amplification | |
CN104561269B (en) | A kind of plasmodium vivax detecting method of rapid sensitive | |
CN108929902B (en) | Peptide nucleic acid primer composition, kit and method for detecting allele HLA-B5801 | |
Esboei | Bahman Rahimi Esboei1, Shirzad Fallahi2, Mohammad Zarei3, Bahram Kazemi4, Mehdi Mohebali5, Saeedeh Shojaee5, Parisa Mousavi6, Aref Teimouri7, Raziyeh Mahmoudzadeh3, 8, Mirataollah Salabati3, 8 and Hossein Keshavarz Valian5, 9 | |
CN106498092B (en) | A kind of one-step method real-time fluorescent quantitative PCR kit of joint-detection H5 subtype avian influenza virus and Virulent Newcastle Disease Virus | |
CN117821609A (en) | Kit for detecting free DNA of echinococcus multilocularis in blood plasma and detection method thereof | |
Poblete et al. | The validity and applicability of Loop-Mediated Isothermal Amplification (LAMP) in the Diagnosis of Malaria in the Philippines | |
CN104531839B (en) | A kind of malariae detection method of rapid sensitive | |
CN104561268A (en) | Rapid and high-throughput plasmodium detection method | |
WO2020084637A1 (en) | Loop mediated isothermal amplification assay for detection of sulphadoxine and pyrimethamine resistance in malaria | |
Contreras | Polymerase Chain Reaction: Molecular Tool Employed in the Diagnostic of Chagas Disease | |
Avila | Sensitivity of malaria diagnosis in blood samples by PCR assay: A comparison with microscopy | |
CN110184362A (en) | A kind of kit using Taqman probe quantitative detection M tuberculosis complex | |
Oddoux et al. | Identification of the five human species including by real-time polymerase chain reaction |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |