CN109652416A - Characteristic sequence, labeled primer and the identification method of thin shell mountain pecan Peach cultivars Sumner - Google Patents
Characteristic sequence, labeled primer and the identification method of thin shell mountain pecan Peach cultivars Sumner Download PDFInfo
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Abstract
The present invention relates to the characteristic sequence of the multipair high specific of thin shell mountain pecan Peach cultivars Sumner, molecular specificity labeled primers and it is a kind of can be to the method that thin shell mountain pecan Peach cultivars Sumner is quickly and accurately identified.The molecular specificity labeled primers group sequence is as follows: 1) upstream primer: 5 '-AAGGGGCTTTGCAGATCCTC-3 ' downstream primer: 5 '-ATCCAAGGCAGCTCTTCCAC-3 ' 2) upstream primer: 5 '-TGGCATGCCCAACTTGATAGT-3 ' downstream primer: 5 '-GCATGACCCTCGTTCGAGAA-3 ' 3) upstream primer: 5 '-AGAGCCGATTCTTCCATGGT-3 ' downstream primer: 5 '-ACCATTTGGATCTTCCCCATCA-3 ' molecular specificity labeled primers of the present invention can carry out quick Early Identification to thin shell mountain pecan Peach cultivars Sumner, method is simple, fast , it is accurate, be that appearance features distinguish the irreplaceable Molecular tools of thin shell mountain pecan Peach cultivars.
Description
Technical field
The present invention relates to the characteristic sequence of thin shell mountain pecan Peach cultivars Sumner, molecular specificity labeled primers combination and benefits
The method that specificity identification is carried out to thin shell mountain pecan Peach cultivars Sumner is combined with the molecular specificity labeled primers.
Background technique
Apocarya (Carya illino nsis (Wangenh.) K.Koch) is that most have in Juglandaceae hickory
The tree species of economic value;Apocarya is typical outcrossing plant, and existing production practices discovery, the kind of apocarya is matched
Setting is one of the principal element for influencing its yield;The U.S. is one of source area of apocarya and center producing region, many years
Come, cultivar about 1000 of U.S.'s breeding name;China introduces a fine variety apocarya and has more than 100 years history, raw at present
Common kind has tens in production, and the production practices of many years prove that the vast subtropical zone in China is the adaptability of apocarya
Area;
But the main problem that faces of the existing apocarya producing region in China be it is under low output and unstable, cause this phenomenon
The reason of have many aspects, one of them is exactly that the kind of existing introduction still lacks specific Genetic relationship, adds one
The confusion that a little filial generations are named, causes to be difficult to carry out effective Juvenile stage and reasonable disposition, is not easy to cultivar identification, pushes away
Extensively, exchange and the cultivation of new varieties, therefore put forth effort to develop some stabilizations, special DNA varieties systematics mark from molecular level
Note is to realize the Scientific Approaches of the accurate Rapid identification of thin shell mountain pecan Peach cultivars;
Some molecule labelling methods for apocarya cultivar identification and Genetic relationship have been reported both at home and abroad, it is relatively good
Have SSR molecular marker method, but these old detection methods are relatively complicated, and unstable result.
Summary of the invention
It is an object of the present invention to provide the characteristic sequence of thin shell mountain pecan Peach cultivars Sumner, molecular specificity labeled primers to combine
And using molecular specificity labeled primers combination to the method for thin shell mountain pecan Peach cultivars Sumner progress specificity identification;
The technical solution adopted by the present invention is that:
The characteristic sequence group of thin shell mountain pecan Peach cultivars Sumner, sequence group are as follows:
1)5′-AATTCTGTACGCAAAGTTGACTTGATCTCCAATGAGGAGGAGTGGTCGATTGTCCAAGGGGCTTTGC
AGATCCTCACAGTTGCAGATTGTTTAACAAGCAGGTCTTCTGTCTTTGAGCTTCCTTGAGAGCTACACTTGCTAGG
TTGAGCACAAGTTTGTCTCTTTCAGTATTTGGTTCAAGTCTGGACCAAAATCAGTCACATTTTGTCAGTGATCATG
GAACTGGGGAGTTGTCTTTGGGTGGAAGAGCTGCCTTGGATGTGGC-3′
2)5′-AATTCATCAATGCAAATGCTCAGCTTCTCTACAAGCTAACCTCCAATTTTCCTGCATGGCATGCCCA
ACTTGATAGTCTTGGCATTGGGTATGATCTCCAGGGTTTCATCACTGGTTCCCACCAGTGTCCTATACTCGGAAGT
AACCCCATTCCTAATGCCATTGTTGCTCGCAATCGCTGGATTCGCCAAGATAAACTTCTTCTATGGCATTTTTGCT
TCAGTTTCTAAAAGCATCTTGCCTTTAATTGCTATCTCAAGCACTTCAAGAGAAGCTTGGCTCAAACTACACAAAT
TGTTCTCGAACGAGGGTCATGCAA-3′
3)5′-AATTCATTCCTAATAATCTTCCTAATAGTGTTGTCAAGAGCCGATTCTTCCATGGTTGAGGTAAACA
CTAACACTCGATATTCCTAGCTGGTGGAGTCTTTGACTATTATCCGACAAGTTCAAAAAGCACAACAGAAGGCTCA
AGAGTCCCTGCAACAGGTAGTAGATGGGTTAGCTCAACAATTACAGGTAGTAGCTACTAATATGGAAAATATGATT
CGGCAAGTGGGCAAAAAGATGGAGGAAACTCCAGTGAAACTCCAGTTGGCCCTGTTATGCACAGTAGCAACTCCCT
TTTTGATGACATAGGTGGCATTCAAACTAAAGTAGTATGTTTGGAGTTTCCTAAATTTGATGGGGAAGATCCAAAT
GGTTGGCTTTATAAAGCCAACCAATTCTTTAGC-3′
The invention further relates to the molecular specificity labeled primers group of thin shell mountain pecan Peach cultivars Sumner, the primer sequences are as follows:
1) upstream primer: 5 '-AAGGGGCTTTGCAGATCCTC-3 '
Downstream primer: 5 '-ATCCAAGGCAGCTCTTCCAC-3 '
2) upstream primer: 5 '-TGGCATGCCCAACTTGATAGT-3 '
Downstream primer: 5 '-GCATGACCCTCGTTCGAGAA-3 '
3) upstream primer: 5 '-AGAGCCGATTCTTCCATGGT-3 '
Downstream primer: 5 '-ACCATTTGGATCTTCCCCATCA-3 '
The source of above-mentioned 3 pairs of primers combination: firstly, filtering out biggish 5 kinds of Traits change from 24 common kinds
Simplify the sequencing and comparative analysis of gene;Then, based on the analysis results design 1000 multipair primers, in 24 samples into
Row screening and verifying, obtain the DNA fragment specific of thin shell mountain pecan Peach cultivars Sumner;Then, by the segment cloning and sequencing, then
By the secondary screening of repeatability sampling more than three times, the molecular specificity labeled primers finally obtained are combined;Drawn with above-mentioned specificity
Object combination carries out PCR amplification to thin shell mountain pecan Peach cultivars, and it is respectively 205bp, 260bp, 327bp size that only Sumner, which can get,
3 specific fragments, other thin shell mountain pecan Peach cultivars cannot obtain the specific fragment for selecting primer combination;It needs to illustrate
It is that molecular specificity labeled primers combination of the invention is only limitted to the identification of thin shell mountain pecan Peach cultivars, i.e. sample to be tested is only limitted to
Apocarya;
For features described above sequence, 3 pairs of specific primers of design, 3 products expanded are respectively as follows:
1)205bp:5′-AAGGGGCTTTGCAGATCCTCACAGTTGCAGATTGTTTAACAAGCAGGTCTTCTGTCTTTGA
GCTTCCTTGAGAGCTACACTTGCTAGGTTGAGCACAAGTTTGTCTCTTTCAGTATTTGGTTCAAGTCTGGACCAAA
ATCAGTCACATTTTGTCAGTGATCATGGAACTGGGGAGTTGTCTTTGGGTGGAAGAGCTGCCTTGGAT-3′
2)260bp:5′-TGGCATGCCCAACTTGATAGTCTTGGCATTGGGTATGATCTCCAGGGTTTCATCACTGGTT
CCCACCAGTGTCCTATACTCGGAAGTAACCCCATTCCTAATGCCATTGTTGCTCGCAATCGCTGGATTCGCCAAGA
TAAACTTCTTCTTGGCATTTTTGCTTCAGTTTCTAAAAGCATCTTGCCTTTAATTGCTATCTCAAGCACTTCAAGA
GAAGCTTGGCTCAAACTACACAAATTGTTCTCGAACGAGGGTCATGC-3′
3)327bp:5′-AGAGCCGATTCTTCCATGGTTGAGGTAAACACTAACACTCGATATTCCTAGCTGGTGGAGT
CTTTGACTATTATCCGACAAGTTCAAAAAGCACAACAGAAGGCTCAAGAGTCCCTGCAACAGGTAGTAGATGGGTT
AGCTCAACAATTACAGGTAGTAGCTACTAATATGGAAAATATGATTCGGCAAGTGGGCAAAAAGATGGAGGAAACT
CCAGTTGGCCCTGTTATGCACAGTAGCAACTCCCTTTTTGATGACATAGGTGGCATTCAAACTAAAGTAGTATGTT
TGGAGTTTCCTAAATTTGATGGGGAAGATCCAAATGGT-3′
The kind that U.S. Sumner 1932 is found from the rich seedling tree of Thailand of the Georgia State;Female flower is first ripe, partially early in the florescence, male
Flower maturity is slower than female flower, in it is to the rear;Belonging to large fruit, oblong, top and bottom are all relatively round, mean fruit weight 9.5g or so,
Kernel coloured gold is yellow, and main groove is close, and both wings have apparent groove, and base portion crack is deep;
The invention further relates to a kind of using the described molecular specificity labeled primers combination, to thin shell mountain pecan Peach cultivars Sumner into
The method of row Rapid identification, the method are as follows: extract the genomic DNA of thin shell mountain pecan Peach cultivars blade to be measured as template, with
The molecular specificity labeled primers group carries out PCR amplification as amplimer, electrophoresis detection is carried out to amplified production, if electric
There are 3 DNA bands of respectively 205bp, 260bp, 327bp size simultaneously in result of swimming, then thin shell mountain pecan Peach cultivars to be measured are
Thin shell mountain pecan Peach cultivars Sumner, it is on the contrary then no;The molecular specificity labeled primers sequence are as follows:
1) upstream primer: 5 '-AAGGGGCTTTGCAGATCCTC-3 '
Downstream primer: 5 '-ATCCAAGGCAGCTCTTCCAC-3 '
2) upstream primer: 5 '-TGGCATGCCCAACTTGATAGT-3 '
Downstream primer: 5 '-GCATGACCCTCGTTCGAGAA-3 '
3) upstream primer: 5 '-AGAGCCGATTCTTCCATGGT-3 '
Downstream primer: 5 '-ACCATTTGGATCTTCCCCATCA-3 '
The method of the present invention key is the selection of amplimer combination, and DNA is extracted, and PCR reaction system and reaction condition determine, with
And electrophoresis detection, it can be carried out according to conventional method in that art;
The method of the present invention is compared with the molecule labelling method of existing thin shell mountain pecan Peach cultivars, such as SSR labeling method, has following excellent
Point: (1) because the primer is verified through sequencing and repeatedly, therefore reliability improves very much;(2) easy to detect, intuitive, it is directly logical
Crossing the combination of the presence or absence of general electrophoresis observation band can determine whether, and also need to utilize high score after expanding if applying SSR marker method
Resolution electrophoresis is further analyzed or is sequenced;(3) lower to the requirement of sample, the DNA sample of the tissues such as blade can satisfy
The needs of cultivar identification;
Preferably, PCR amplification system composition of the present invention is as follows:
PCR Buffer final concentration of 1 ×
dNTPs 1 mmol/L
MgCl2 2.5 mmol/L
1.0 U/ of Taq enzyme reaction
Each 0.2 μM of upstream and downstream primer
60 ng/ of template DNA reaction
Surplus is ddH2O;
The PCR amplification condition is as follows: after 94 DEG C of initial denaturation 300s, 95 DEG C of denaturation 10s, 56 DEG C of annealing time 50s, 72 DEG C extend
40s is recycled 30 times, altogether finally in 72 DEG C of filling-in 300s;Final temperature is 4 DEG C;
PCR Buffer final concentration of 1 ×, refer to the concentration of each component in the reaction system and 1 × PCR in PCR Buffer
Buffer is identical, and usually selecting volume is 10 × PCR Buffer of reaction system volume 1/10;10 × PCR Buffer ingredient
Are as follows: 100 mM Tris-HCl(pH 8.5), 500 mM KCl, 25 mM MgCl2With 1.0% Triton-X-100, solvent is
ddH2O;
Specifically, the method is as follows:
(1) apocarya blade to be measured is taken, liquid feeding nitrogen is ground, using the novel quick-speed plant extracting genome DNA of bioteke
The operating instruction of kit extracts the genomic DNA of apocarya blade to be measured;
(2) genomic DNA extracted using step (1) is template, using the molecular specificity labeled primers as amplimer,
Carry out PCR amplification:
The every 15 μ l composition of PCR reaction system is as follows:
2×TsingKE master mix 7.5μl
Each 0.2 μ l of 10 μM of upstream and downstream primers
20 ng/ μ l template DNA, 2 μ l
dd H2O 4.3μl;
PCR reaction condition is as follows:
After 94 DEG C of initial denaturation 300s, 95 DEG C of denaturation 10s, 56 DEG C of annealing times 50s, 72 DEG C of extension 40s, circulation 30 times altogether, finally
In 72 DEG C of filling-in 300s;Final temperature is 4 DEG C;
(3) 3 μ l of step (2) amplified production is taken, is mixed with 1 μ l, 0.25% bromjophenol blue buffer, point sample is solidifying in 1.5% agarose
On glue, in 1 × TAE buffer, electrophoresis under 5V/cm voltage, EB is dyed after electrophoresis, on Yu Zidong gel image analysis instrument
Photograph, if the DNA band of respectively 205bp, 260bp, 327bp size, thin shell mountain pecan Peach cultivars to be measured occurs in electrophoresis result
For Sumner;It is on the contrary then no.
Detailed description of the invention
Fig. 1 is that (number 1-24 represents thin shell mountain pecan Peach cultivars by the result of 24 kinds of thin shell mountain pecan Peach cultivars progress PCR amplifications
Successively are as follows: 1, Moore, 2, Dependable, 3, Nacono, 4, quiet state 1,5, Van Deman, 6, Sturat5,7,
Forkert, 8, Desirable, 9, Davis, 10, Elliott, 11, Caddo, 12, Schley, 13, Choctaw, 14, Shaoxing,
15, Wichita, 16, Sumner, 17, Mahan, 18, Gloria Grande, 19, Peruque, 20, Sioux, 21, Pyzner,
22, Pawnee, 23, Osage, 24, Oconee);M is Takara DL2000 marker;Only number 16 is apocarya product
Kind Sumner has amplified 3 specific DNA bands of respectively 205bp, 260bp, 327bp size;Remaining number is other
Thin shell mountain pecan Peach cultivars there are no the generation of specific DNA band.
Specific embodiment
The present invention is described further combined with specific embodiments below, but protection scope of the present invention is not limited in
This:
Embodiment 1:
(1) extraction of apocarya variety genome DNA:
0.05 g of thin shell mountain pecan Peach cultivars young leaflet tablet to be measured is taken, liquid feeding nitrogen is thoroughly ground, and the extraction of genomic DNA uses
The operating instruction of the novel quick-speed plant genome DNA extracting reagent kit of bioteke, is repeatedly extracted, to obtain apocarya
The extracting genome DNA object of kind;DNA extract detected using 1.5% agarose gel electrophoresis integrality, purity and
Concentration;Judge band brightness for subsequent PCR amplification;DNA extract is spare in -20 DEG C of refrigerator storages;
(2) specific PCR amplification primer, the sequence of primer pair are designed are as follows:
A: upstream primer: 5 '-AAGGGGCTTTGCAGATCCTC-3 '
Downstream primer: 5 '-ATCCAAGGCAGCTCTTCCAC-3 '
B: upstream primer: 5 '-TGGCATGCCCAACTTGATAGT-3 '
Downstream primer: 5 '-GCATGACCCTCGTTCGAGAA-3 '
C: upstream primer: 5 '-AGAGCCGATTCTTCCATGGT-3 '
Downstream primer: 5 '-ACCATTTGGATCTTCCCCATCA-3 '
By Shanghai, biotechnology Co., Ltd is synthesized;
(3) PCR amplification:
PCR reaction solution forms (15 μ l):
2 × TsingKE master mix master mix(holds up section's biology, Beijing) 7.5 μ l
Each 0.2 μ l of 10 μM of upstream and downstream primers
20 ng/ μ L template DNA, 2 μ l
dd H2O 4.3μl;
Amplified reaction carries out on TC-XP type amplification instrument;Amplification condition: after 94 DEG C of initial denaturation 300s, 95 DEG C of denaturation 10s, 56 DEG C
Annealing time 50s, 72 DEG C of extension 40s are recycled 30 times, altogether finally in 72 DEG C of filling-in 300s;Final temperature is 4 DEG C;
(4) electrophoresis detection: taking 3 μ l of step (3) pcr amplification product, with 1 μ l, 0.25% bromjophenol blue buffer mix, point sample in
On 1.5% Ago-Gel, in 1 × TAE buffer, electrophoresis under 5V/cm voltage after electrophoresis, is containing 0.5 μ g/mL
It dyes in the aqueous solution of EB 30 minutes, then takes a picture on Bio-rad gel imaging system Gel Doc;
To 24 thin shell mountain pecan Peach cultivars, (number 1-24 represents thin shell mountain pecan Peach cultivars and is followed successively by: 1, respectively according to the method described above
Moore, 2, Dependable, 3, Nacono, 4, quiet state 1,5, Van Deman, 6, Sturat5,7, Forkert, 8,
Desirable, 9, Davis, 10, Elliott, 11, Caddo, 12, Schley, 13, Choctaw, 14, Shaoxing, 15,
Wichita, 16, Sumner, 17, Mahan, 18, Gloria Grande, 19, Peruque, 20, Sioux, 21, Pyzner, 22,
Pawnee, 23, Osage, 24, Oconee) PCR amplification map carry out electrophoresis detection, the result is shown in Figure 1;
Three have wherein only been amplified from the thin shell mountain pecan Peach cultivars Sumner that number is 16 clear bright, stable is respectively
The specific DNA band of 205bp, 260bp, 327bp, and the thin shell mountain pecan Peach cultivars of remaining number, there are no special DNA band and produce
It is raw, there are not other non-purpose bands to generate, it is seen that the molecular specificity labeled primers that the present invention develops are to for shell mountain yet
The early stage of Walnut Cultivars Sumner identifies that stability, specificity are very high.
SEQUENCE LISTING
<110>Zhejiang Prov. Forest Science Inst
<120>characteristic sequence of thin shell mountain pecan Peach cultivars Sumner, labeled primer and identification method
<130>
<160> 12
<170> PatentIn version 3.3
<210> 1
<211> 265
<212> DNA
<213> Carya illinoensis
<220>
<221> unsure
<400> 1
aattctgtac gcaaagttga cttgatctcc aatgaggagg agtggtcgat tgtccaaggg 60
gctttgcaga tcctcacagt tgcagattgt ttaacaagca ggtcttctgt ctttgagctt 120
ccttgagagc tacacttgct aggttgagca caagtttgtc tctttcagta tttggttcaa 180
gtctggacca aaatcagtca cattttgtca gtgatcatgg aactggggag ttgtctttgg 240
gtggaagagc tgccttggat gtggc 265
<210> 2
<211> 205
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 2
aaggggcttt gcagatcctc acagttgcag attgtttaac aagcaggtct tctgtctttg 60
agcttccttg agagctacac ttgctaggtt gagcacaagt ttgtctcttt cagtatttgg 120
ttcaagtctg gaccaaaatc agtcacattt tgtcagtgat catggaactg gggagttgtc 180
tttgggtgga agagctgcct tggat 205
<210> 3
<211> 20
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 3
aaggggcttt gcagatcctc 20
<210> 4
<211> 20
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 4
atccaaggca gctcttccac 20
<210> 5
<211> 319
<212> DNA
<213> Carya illinoensis
<220>
<221> unsure
<400> 5
aattcatcaa tgcaaatgct cagcttctct acaagctaac ctccaatttt cctgcatggc 60
atgcccaact tgatagtctt ggcattgggt atgatctcca gggtttcatc actggttccc 120
accagtgtcc tatactcgga agtaacccca ttcctaatgc cattgttgct cgcaatcgct 180
ggattcgcca agataaactt cttctatggc atttttgctt cagtttctaa aagcatcttg 240
cctttaattg ctatctcaag cacttcaaga gaagcttggc tcaaactaca caaattgttc 300
tcgaacgagg gtcatgcaa 319
<210> 6
<211> 260
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 6
tggcatgccc aacttgatag tcttggcatt gggtatgatc tccagggttt catcactggt 60
tcccaccagt gtcctatact cggaagtaac cccattccta atgccattgt tgctcgcaat 120
cgctggattc gccaagataa acttcttctt ggcatttttg cttcagtttc taaaagcatc 180
ttgcctttaa ttgctatctc aagcacttca agagaagctt ggctcaaact acacaaattg 240
ttctcgaacg agggtcatgc 260
<210> 7
<211> 21
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 7
tggcatgccc aacttgatag t 21
<210> 8
<211> 20
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 8
gcatgaccct cgttcgagaa 20
<210> 9
<211> 404
<212> DNA
<213> Carya illinoensis
<220>
<221> unsure
<400> 9
aattcattcc taataatctt cctaatagtg ttgtcaagag ccgattcttc catggttgag 60
gtaaacacta acactcgata ttcctagctg gtggagtctt tgactattat ccgacaagtt 120
caaaaagcac aacagaaggc tcaagagtcc ctgcaacagg tagtagatgg gttagctcaa 180
caattacagg tagtagctac taatatggaa aatatgattc ggcaagtggg caaaaagatg 240
gaggaaactc cagtgaaact ccagttggcc ctgttatgca cagtagcaac tccctttttg 300
atgacatagg tggcattcaa actaaagtag tatgtttgga gtttcctaaa tttgatgggg 360
aagatccaaa tggttggctt tataaagcca accaattctt tagc 404
<210> 10
<211> 327
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 10
agagccgatt cttccatggt tgaggtaaac actaacactc gatattccta gctggtggag 60
tctttgacta ttatccgaca agttcaaaaa gcacaacaga aggctcaaga gtccctgcaa 120
caggtagtag atgggttagc tcaacaatta caggtagtag ctactaatat ggaaaatatg 180
attcggcaag tgggcaaaaa gatggaggaa actccagttg gccctgttat gcacagtagc 240
aactcccttt ttgatgacat aggtggcatt caaactaaag tagtatgttt ggagtttcct 300
aaatttgatg gggaagatcc aaatggt 327
<210> 11
<211> 20
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 11
agagccgatt cttccatggt 20
<210> 12
<211> 22
<212> DNA
<213> unknown
<220>
<221> unsure
<223>artificial sequence
<400> 12
accatttgga tcttccccat ca 22
Claims (5)
1. the characteristic sequence group of thin shell mountain pecan Peach cultivars Sumner, sequence group are as follows:
5′-AATTCTGTACGCAAAGTTGACTTGATCTCCAATGAGGAGGAGTGGTCGATTGTCCAAGGGGCTTTGCAG
ATCCTCACAGTTGCAGATTGTTTAACAAGCAGGTCTTCTGTCTTTGAGCTTCCTTGAGAGCTACACTTGCTAGGTT
GAGCACAAGTTTGTCTCTTTCAGTATTTGGTTCAAGTCTGGACCAAAATCAGTCACATTTTGTCAGTGATCATGGA
ACTGGGGAGTTGTCTTTGGGTGGAAGAGCTGCCTTGGATGTGGC-3′
5′-AATTCATCAATGCAAATGCTCAGCTTCTCTACAAGCTAACCTCCAATTTTCCTGCATGGCATGCCCAAC
TTGATAGTCTTGGCATTGGGTATGATCTCCAGGGTTTCATCACTGGTTCCCACCAGTGTCCTATACTCGGAAGTAA
CCCCATTCCTAATGCCATTGTTGCTCGCAATCGCTGGATTCGCCAAGATAAACTTCTTCTATGGCATTTTTGCTTC
AGTTTCTAAAAGCATCTTGCCTTTAATTGCTATCTCAAGCACTTCAAGAGAAGCTTGGCTCAAACTACACAAATTG
TTCTCGAACGAGGGTCATGCAA-3′
5′-AATTCATTCCTAATAATCTTCCTAATAGTGTTGTCAAGAGCCGATTCTTCCATGGTTGAGGTAAACACT
AACACTCGATATTCCTAGCTGGTGGAGTCTTTGACTATTATCCGACAAGTTCAAAAAGCACAACAGAAGGCTCAAG
AGTCCCTGCAACAGGTAGTAGATGGGTTAGCTCAACAATTACAGGTAGTAGCTACTAATATGGAAAATATGATTCG
GCAAGTGGGCAAAAAGATGGAGGAAACTCCAGTGAAACTCCAGTTGGCCCTGTTATGCACAGTAGCAACTCCCTTT
TTGATGACATAGGTGGCATTCAAACTAAAGTAGTATGTTTGGAGTTTCCTAAATTTGATGGGGAAGATCCAAATGG
TTGGCTTTATAAAGCCAACCAATTCTTTAGC-3′。
2. the molecular specificity labeled primers group of thin shell mountain pecan Peach cultivars Sumner, the primer sequence are as follows:
1) upstream primer: 5 '-AAGGGGCTTTGCAGATCCTC-3 '
Downstream primer: 5 '-ATCCAAGGCAGCTCTTCCAC-3 '
2) upstream primer: 5 '-TGGCATGCCCAACTTGATAGT-3 '
Downstream primer: 5 '-GCATGACCCTCGTTCGAGAA-3 '
3) upstream primer: 5 '-AGAGCCGATTCTTCCATGGT-3 '
Downstream primer: 5 '-ACCATTTGGATCTTCCCCATCA-3 '.
3. a kind of carry out quickly thin shell mountain pecan Peach cultivars Sumner using molecular specificity labeled primers as claimed in claim 2
The method of identification, the method are as follows: extract the genomic DNA of thin shell mountain pecan Peach cultivars blade to be measured as template, with described point
Sub- specificity labeled primers carry out PCR amplification as amplimer, electrophoresis detection are carried out to amplified production, if electrophoresis result is same
When occur be respectively 205bp, 260bp, 3 specific DNA bands of 327bp size, then thin shell mountain pecan Peach cultivars to be measured be shell
Hickory nut kind is Sumner, on the contrary then no;The molecular specificity labeled primers group sequence are as follows:
1) upstream primer: 5 '-AAGGGGCTTTGCAGATCCTC-3 '
Downstream primer: 5 '-ATCCAAGGCAGCTCTTCCAC-3 '
2) upstream primer: 5 '-TGGCATGCCCAACTTGATAGT-3 '
Downstream primer: 5 '-GCATGACCCTCGTTCGAGAA-3 '
3) upstream primer: 5 '-AGAGCCGATTCTTCCATGGT-3 '
Downstream primer: 5 '-ACCATTTGGATCTTCCCCATCA-3 '.
4. method as claimed in claim 3, it is characterised in that the PCR amplification condition is as follows: after 94 DEG C of initial denaturation 300s, 95
DEG C denaturation 10s, 56 DEG C of annealing times 50s, 72 DEG C of extensions 40s, altogether circulation 30 times, finally in 72 DEG C of filling-in 300s;Final temperature
It is 4 DEG C.
5. the method as described in claim 3,4, it is characterised in that the method is as follows:
(1) apocarya blade to be measured is taken, liquid feeding nitrogen is ground, and the extraction of genomic DNA uses the novel quick-speed plant of bioteke
The operating instruction of genome DNA extracting reagent kit;
(2) genomic DNA extracted using step (1) is template, using the molecular specificity labeled primers as amplimer, into
Row PCR amplification:
The every 15 μ l composition of PCR reaction system is as follows:
2×TsingKE master mix 7.5μl
Each 0.2 μ l of 10 μM of upstream and downstream primers
20 ng/ μ l template DNA, 2 μ l
dd H2O 4.3μl;
PCR amplification condition is as follows:
After 94 DEG C of initial denaturation 300s, 95 DEG C of denaturation 10s, 56 DEG C of annealing times 50s, 72 DEG C of extension 40s, circulation 30 times altogether, finally
In 72 DEG C of filling-in 300s;Final temperature is 4 DEG C;
(3) 3 μ l of step (2) amplified production is taken, is mixed with 1 μ l, 0.25% bromjophenol blue buffer, point sample is solidifying in 1.5% agarose
On glue, in 1 × TAE buffer, electrophoresis under 5V/cm voltage, EB is dyed after electrophoresis, and Yu Zidong gel imaging system can photograph well
Phase, if 3 DNA bands of respectively 205bp, 260bp, 327bp size, apocarya to be measured occurs simultaneously in electrophoresis result
Kind is Sumner, on the contrary then no.
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CN108330163A (en) * | 2017-09-02 | 2018-07-27 | 浙江省林业科学研究院 | Characteristic sequence, primer and the identification method of thin shell mountain pecan Peach cultivars Nacono and Sumner |
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CN107557434A (en) * | 2017-09-02 | 2018-01-09 | 浙江省林业科学研究院 | Thin shell mountain pecan Peach cultivars Van Deman characteristic sequence, labeled primer and authentication method |
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