CN107988207A - Extracted from complex samples and purify the kit and method of salmonella DNA - Google Patents

Extracted from complex samples and purify the kit and method of salmonella DNA Download PDF

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Publication number
CN107988207A
CN107988207A CN201711431673.2A CN201711431673A CN107988207A CN 107988207 A CN107988207 A CN 107988207A CN 201711431673 A CN201711431673 A CN 201711431673A CN 107988207 A CN107988207 A CN 107988207A
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magnetic bead
salmonella
dna
complex samples
albumen
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CN107988207B (en
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王义翠
张通
李硕
刘奕
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Ji'nan Chemsunny Technology Co Ltd
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1003Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor
    • C12N15/1006Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers
    • C12N15/1013Extracting or separating nucleic acids from biological samples, e.g. pure separation or isolation methods; Conditions, buffers or apparatuses therefor by means of a solid support carrier, e.g. particles, polymers by using magnetic beads

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Abstract

The invention discloses a kind of kit and method extracted from complex samples and purify salmonella DNA, belong to biology field.The present invention extracts from complex samples and purifies the kit of salmonella DNA, including:1)It has been coupled the carboxylated nanometer magnetic bead CPBA MNPs of gp13 albumen;2)Sample dilution;3)Sample lysate;4)Nucleic acid cleaning solution;5)DNA eluents 6)Nucleic acid absorption magnetic bead.The present invention then purifies salmonella using the carboxylated nanometer magnetic bead CPBA MNPs specific binding salmonellas for being coupled gp13 albumen, and the paramagnetic particle method of salmonella after purification then is extracted DNA.Isolation and purification culture of the whole process without salmonella, directly carries out DNA extractions;Simplify experimentation, greatly save experimental period.

Description

Extracted from complex samples and purify the kit and method of salmonella DNA
Technical field
It is more particularly to a kind of to be extracted from complex samples and purify salmonella the present invention relates to biology field The kit and method of DNA.
Background technology
Salmonella(Salmonella)It is Gram-negative enteric bacterium, a kind of common Zoonosis pathogen, not only Cause various Animal diseases, and it is related with a variety of diseases of the mankind.Salmonella can be divided into Salmonella enteritidis and Bang Geersha Door 2 kinds of Salmonella, Salmonella enteritidis can be divided into 6 subspecies.
Salmonella bacteriophage P22 is a kind of virus using salmonella as host, and host specificity is very strong.Gp13 is located at Bacteriophage P22 long tailfibers end, its C-terminal can identify host strain surface receptor, trigger phage adsorption to salmonella surface Process, be bacteriophage P22 identification receptors key protein.
Complex samples refer to food, excrement, soil, vomitus equal samples, these samples generally all containing suppress downstream PCR or The inhibitor of person NGS detections, such as complicated polysaccharide, cholate, lipid and uric acid etc..Tradition is from complex samples(Food, excrement, soil Earth, vomitus etc.)The method of middle extraction salmonella DNA needs first to separate from sample and purify culture bacterial strain, then from purifying Nucleic acid is extracted in good bacterial strain, process is more complicated, and the time used is longer.
The content of the invention
In order to make up for the deficiencies of the prior art, the existing procedure that salmonella DNA is extracted from complex samples is solved Complicated, the problem of required time is long, the present invention provides a kind of reagent extracted from complex samples and purify salmonella DNA Box and method.
The technical scheme is that:
A kind of kit extracted from complex samples and purify salmonella DNA, it is characterised in that including:
1)It has been coupled the carboxylated nanometer magnetic bead CPBA-MNPs of gp13 albumen;
2)Sample dilution;
3)Sample lysate;
4)Nucleic acid cleaning solution;
5)DNA eluents
6)Nucleic acid absorption magnetic bead.
Preferably, step 1)The preparation method of the middle carboxyl nanometer magnetic bead CPBA-MNPs for being coupled gp13 albumen For:
a)Using the salmonella expression system of gp13 albumen, solubility expression gp13 albumen simultaneously purifies;
b)Activated hydroxyl groups nanometer magnetic bead:
c)Gp13 albumen is coupled with hydroxylating nanometer magnetic bead.
Further, step c)The detailed process that gp13 albumen is coupled with hydroxylating nanometer magnetic bead is:
Using the borate solution containing Tween-20 as coupling buffer, hydroxylating nano magnetic is cleaned with the coupling buffer Pearl;
The hydroxylating nanometer magnetic bead, gp13 albumen after purification and coupling buffer are mixed, 2-4 is coupled at 20-30 DEG C Hour;Magnetic Isolation removes supernatant, adds PBST solution and magnetic bead, 20-30 DEG C of reaction 30-90min closing magnetic bead surfaces are resuspended Unreacted activated hydroxyl groups group;
Magnetic Isolation supernatant, after PBS or preservation solution washing, is placed in and preserves in solution, 4 DEG C of preservations.
Preferably, the pH of the coupling buffer is 7.5-8.5.It is furthermore preferred that the pH of the coupling buffer For 8.5.
Preferably, the composition of the Sample dilution is:NaCl 137mM, KCl 2.7mM, Na2HPO4 4.3mM, KH2PO41.4mM, 0.05%Tween-20;
The composition of the sample lysate is:NaCl 0.05mM, EDTA 5mM, the Tris-HCl 20mM of PH=7.5, bacteriolyze Enzyme 3mg/ml.
Preferably, the composition of the nucleic acid cleaning solution is:NaCl 0.05mM, EDTA 0.05mM, PH=7.5 Tris-HCl 20mM, absolute ethyl alcohol 70%.
Preferably, the composition of the DNA eluents is:EDTA 5mM, the Tris-HCl 10mM of PH=8.8.
The method extracted using the kit from complex samples and purify salmonella DNA, including step:
1)Complex samples are taken, add the sample diluting liquid, after mixing, centrifuging and taking supernatant;
2)Add the carboxylated nanometer magnetic bead CPBA-MNPs for being coupled gp13 albumen, shaken cultivation 10- at 36.5-37.5 DEG C 20min;
3)Magnetic Isolation combines the magnetic bead of salmonella, removes liquid, and the magnetic bead magnetic bead for combining salmonella uses sample Dilution cleans;
4)Sample lysate is added into the magnetic bead for combine salmonella, 15-20min is incubated at 36.5-37.5 DEG C, is cracked Thalline;
5)After cracking, it is cooled to room temperature, adds nucleic acid absorption magnetic bead, room temperature mixes;
6)The magnetic bead for being adsorbed with nucleic acid is cleaned using nucleic acid cleaning solution;
7)DNA eluents are added into the magnetic bead for be adsorbed with nucleic acid, are incubated at 36.5-37.5 DEG C, then Magnetic Isolation, supernatant Preserved at -20 DEG C.
Preferably, step 1)In, 8-10 mL sample diluting liquids are added in 1g complex samples;Step 2)Middle coupling The carboxylated nanometer magnetic bead CPBA-MNPs of gp13 albumen and step 1)The volume ratio of supernatant is 1:0.6-1.5.
Preferably, step 4)In, the volume ratio of the magnetic bead and sample lysate that combine salmonella is 1:3- 5;Step 5)In, the volume ratio of nucleic acid absorption magnetic bead and the magnetic bead for combining salmonella is 2.5-3.5:2;Step 7)In, DNA The volume ratio of eluent and nucleic acid absorption magnetic bead is 1:5-7.
Beneficial effects of the present invention are:
The present invention specifically binds salmonella then to sramana using the carboxylated nanometer magnetic bead CPBA-MNPs for being coupled gp13 Salmonella is purified, and the paramagnetic particle method of salmonella after purification then is extracted DNA.Separation of the whole process without salmonella Purifying culture, directly carries out DNA extractions;Simplify experimentation, greatly save experimental period.
Brief description of the drawings
In order to illustrate more clearly about the embodiment of the present invention or technical scheme of the prior art, below will be to embodiment or existing There is attached drawing needed in technology description to be briefly described, it should be apparent that, drawings in the following description are only this Some embodiments of invention, for those of ordinary skill in the art, without having to pay creative labor, may be used also To obtain other attached drawings according to these attached drawings.
Fig. 1 is the electrophoretogram of gp13 albumen after purification;
Fig. 2 is that the soak time of hydroxylating nanometer magnetic bead influences situation map to gp13 albumen couplings amount;
Fig. 3 is that the pH of coupling buffer influences situation map to gp13 albumen couplings amount;
Fig. 4 is influence situation map of the coupling time to gp13 albumen coupling amounts;
Fig. 5 is the design sketch of the method for the present invention PCR nucleic acid extractions.
Embodiment
Embodiment 1
A kind of kit extracted from complex samples and purify salmonella DNA, including:
1)It has been coupled the carboxylated nanometer magnetic bead CPBA-MNPs of gp13 albumen;
2)Sample dilution(Reagent A);
3)Sample lysate(Reagent B);
4)Nucleic acid cleaning solution(Reagent C);
5)DNA eluents(Reagent D)
6)Nucleic acid absorption magnetic bead;
Wherein,
The composition of reagent A is:NaCl 137mM, KCl 2.7mM, Na2HPO4 4.3mM, KH2PO41.4mM, 0.05% Tween-20。
The composition of reagent B is:NaCl 0.05mM, EDTA 5mM, the Tris-HCl 20mM of PH=7.5, lysozyme 3mg/ml。
The composition of reagent C is:NaCl 0.05mM, EDTA 0.05mM, the Tris-HCl 20mM of PH=7.5, anhydrous second Alcohol 70%.
The composition of reagent D is:EDTA 5mM, the Tris-HCl 10mM of PH=8.8.
The preparation method for being coupled the carboxyl nanometer magnetic bead CPBA-MNPs of gp13 albumen is:
a)Using the salmonella expression system of gp13 albumen, solubility expression gp13 albumen simultaneously purifies;Gp13 eggs after purification White protein electrophoresis figure is as shown in Figure 1.
b)Activated hydroxyl groups nanometer magnetic bead;
Carboxylated nanometer magnetic bead uses the nanometer magnetic bead of commercialization(Suzhou castor biomedical engineering Co., Ltd MagCOOH), After mixing magnetic bead, 100 uL Mag COOH magnetic beads are taken into 1.5 mL centrifuge tubes, and Magnetic Isolation removes supernatant, with 200 uL MEST solution(100 mM MES (2-(N- morpholines)Ethyl sulfonic acid monohydrate), pH 5.0,0.05% Tween 20)Carry out magnetic Separating, washing 2 times, then removes supernatant;
It is rapidly added 100 μ L EDC of Fresh(Dichloroethanes)Solution(10 mg/mL, are disperseed with above-mentioned MEST solution Agent)With 100 μ L NHS(10 mg/mL, make dispersant with above-mentioned MEST solution)Solution is into the centrifuge tube equipped with magnetic bead, whirlpool Mixing makes magnetic bead fully suspend, and 25 DEG C of 30 min of activation, are kept the suspended state of magnetic bead, carried out using vertical mixed instrument during this period It is reverse to mix;After above-mentioned steps, the carboxyl of magnetic bead surfaces is activated, can with the bio-ligand with primary amino radical into Row covalent coupling.
The soak time of hydroxylating nanometer magnetic bead influences than more significant albumen coupling amount, as shown in Fig. 2, when magnetic bead activates Between most preferably 30min, soak time is long or too short can all influence gp13 albumen coupling amounts.
c)Gp13 albumen is coupled with hydroxylating nanometer magnetic bead.
Step c)The detailed process that gp13 albumen is coupled with hydroxylating nanometer magnetic bead is:
A. Magnetic Isolation removes supernatant, with Tween-20 of the borate solution of 1mmol/L containing 0.05g/dL(Abbreviation BST)Make For coupling buffer, first magnetic bead being cleaned with BST 2 times, adding the gp13 of appropriate BST and 150ug after purification, volume is settled to 300uL;Wherein, the pH of coupling buffer is 7.5-8.5, is most preferably 8.0.The pH of coupling buffer is to gp13 albumen coupling amounts Influence significantly, as shown in figure 3, when coupling buffer pH is 8.0, gp13 albumen couplings amount is maximum.
B.25 DEG C 2 h of coupling, reverse mixing is carried out using vertical mixed instrument;
Coupling time also has considerable influence to gp13 albumen coupling amounts, as shown in figure 4, when coupling time is 2 small, gp13 albumen is even Connection amount is maximum.
C. centrifuge tube is placed in Magnetic Isolation on magnetic separation rack and removes supernatant, adds 300 uL PBST solution(pH 7.2, and contain 1%BSA)Magnetic bead is resuspended, 25 DEG C of reaction 1 h closing unreacted activated carboxyl groups of magnetic bead surfaces, keep during this period The suspended state of magnetic bead.
D. centrifuge tube is placed in Magnetic Isolation on magnetic separator and removes supernatant, every time with 200 uL PBS solutions(pH 7.2)Or after preservation solution washs 3 times, it is resuspended in preserving solution(Containing 0.02g/dLNaN3BST-BSA)In, obtain even Join the carboxylated nanometer magnetic bead CPBA-MNPs of gp13 albumen, be stored in 4 DEG C.
The method extracted using kit from complex samples and purify salmonella DNA, including step:
1)1g complex samples are taken, add 9mL reagent As in the centrifuge tube of 50mL, after fully mixing, centrifugation, takes 200 μ L of supernatant liquid In the centrifuge tube of 1.5mL;
2)Add the carboxylated nanometer magnetic bead CPBA-MNPs that 200 μ L have been coupled gp13 albumen, 37 DEG C, 100rpm shaken cultivations 15min;
3)The magnetic bead that magnetic frame Magnetic Isolation combines salmonella is placed in, removes liquid, combines the magnetic bead magnetic of salmonella Pearl is cleaned at least 3 times using 400 μ L reagent As;
4)800 μ L reagent B are added into the magnetic bead for combine salmonella, 15-20min is incubated at 37 DEG C, crack thalline;
5)After cracking, centrifuge tube is taken out from incubation equipment, is cooled to room temperature, adds nucleic acid absorption magnetic bead(It is purchased from BioMag article No.s:BMQ300) 300 μ L, room temperature mix;Centrifuge tube is placed in magnetic separation on magnetic frame, waste liquid is removed and inhales Net tube cover and tube bottom residual night;
6)The magnetic bead for being adsorbed with nucleic acid is cleaned using 1mL reagent Cs, magnetic separation, the tube cover that exhausts and tube bottom residual night;Repeat above-mentioned step Suddenly twice, uncap at room temperature and dry;
7)50 μ L reagent Ds are added into the magnetic bead for be adsorbed with nucleic acid, it is anti-terminate in water-bath incubate after magnetic separation, draw supernatant Liquid preserves in new EP pipes at -20 DEG C.
Fig. 5 is the design sketch that nucleic acid extraction is carried out using the method for the present invention, and as shown in Figure 5, the present invention can be carried effectively The nucleic acid of salmonella is taken, and extraction process need not isolate and purify sample, can effectively save from various complex samples Extract the time of nucleic acid.

Claims (10)

  1. A kind of 1. kit extracted from complex samples and purify salmonella DNA, it is characterised in that including:
    1)It has been coupled the carboxylated nanometer magnetic bead CPBA-MNPs of gp13 albumen;
    2)Sample dilution;
    3)Sample lysate;
    4)Nucleic acid cleaning solution;
    5)DNA eluents
    6)Nucleic acid absorption magnetic bead.
  2. 2. extracted as claimed in claim 1 from complex samples and purify the kit of salmonella DNA, it is characterised in that step Rapid 1)The preparation method of the middle carboxyl nanometer magnetic bead CPBA-MNPs for being coupled gp13 albumen is:
    a)Using the salmonella expression system of gp13 albumen, solubility expression gp13 albumen simultaneously purifies;
    b)Activated hydroxyl groups nanometer magnetic bead:
    c)Gp13 albumen is coupled with hydroxylating nanometer magnetic bead.
  3. 3. extracted as claimed in claim 2 from complex samples and purify the kit of salmonella DNA, it is characterised in that step Rapid c)The detailed process that gp13 albumen is coupled with hydroxylating nanometer magnetic bead is:
    Using the borate solution containing Tween-20 as coupling buffer, hydroxylating nano magnetic is cleaned with the coupling buffer Pearl;
    The hydroxylating nanometer magnetic bead, gp13 albumen after purification and coupling buffer are mixed, 2-4 is coupled at 20-30 DEG C Hour;Magnetic Isolation removes supernatant, adds PBST solution and magnetic bead, 20-30 DEG C of reaction 30-90min closing magnetic bead surfaces are resuspended Unreacted activated hydroxyl groups group;
    Magnetic Isolation supernatant, after PBS or preservation solution washing, is placed in and preserves in solution, 4 DEG C of preservations.
  4. 4. extracted as claimed in claim 3 from complex samples and purify the kit of salmonella DNA, it is characterised in that institute The pH for stating coupling buffer is 7.5-8.5.
  5. 5. extracted as claimed in claim 1 from complex samples and purify the kit of salmonella DNA, it is characterised in that institute The composition for stating Sample dilution is:The composition of the Sample dilution is:NaCl 137mM, KCl 2.7mM, Na2HPO4 4.3mM, KH2PO41.4mM, 0.05%Tween-20;The composition of the sample lysate is:NaCl 0.05mM, EDTA 5mM, the Tris-HCl 20mM of PH=7.5, lysozyme 3mg/ml.
  6. 6. extracted as claimed in claim 1 from complex samples and purify the kit of salmonella DNA, it is characterised in that institute The composition for stating nucleic acid cleaning solution is:NaCl 0.05mM, EDTA 0.05mM, the Tris-HCl 20mM of PH=7.5, anhydrous second Alcohol 70%.
  7. 7. extracted as claimed in claim 1 from complex samples and purify the kit of salmonella DNA, it is characterised in that institute The composition for stating DNA eluents is:EDTA 5mM, the Tris-HCl 10mM of PH=8.8.
  8. 8. the method extracted from complex samples using kit described in claim 1 and purified salmonella DNA, its feature exist In, including step:
    1)Complex samples are taken, add the sample diluting liquid, after mixing, centrifuging and taking supernatant;
    2)Add the carboxylated nanometer magnetic bead CPBA-MNPs for being coupled gp13 albumen, shaken cultivation 10- at 36.5-37.5 DEG C 20min;
    3)Magnetic Isolation combines the magnetic bead of salmonella, removes liquid, and the magnetic bead magnetic bead for combining salmonella uses sample Dilution cleans;
    4)Sample lysate is added into the magnetic bead for combine salmonella, 15-20min is incubated at 36.5-37.5 DEG C, is cracked Thalline;
    5)After cracking, it is cooled to room temperature, adds nucleic acid absorption magnetic bead, room temperature mixes;
    6)The magnetic bead for being adsorbed with nucleic acid is cleaned using nucleic acid cleaning solution;
    7)DNA eluents are added into the magnetic bead for be adsorbed with nucleic acid, are incubated at 36.5-37.5 DEG C, then Magnetic Isolation, supernatant Preserved at -20 DEG C.
  9. 9. the method extracted as claimed in claim 8 from complex samples and purify salmonella DNA, it is characterised in that:Step 1)In, 8-10 mL sample diluting liquids are added in 1g complex samples;Step 2)The middle carboxylated nanometer magnetic bead for being coupled gp13 albumen CPBA-MNPs and step 1)The volume ratio of supernatant is 1:0.6-1.5.
  10. 10. the method extracted as claimed in claim 8 from complex samples and purify salmonella DNA, it is characterised in that:Step 4)In, the volume ratio of the magnetic bead and sample lysate that combine salmonella is 1:3-5;Step 5)In, nucleic acid absorption magnetic bead with The volume ratio for combining the magnetic bead of salmonella is 2.5-3.5:2;Step 7)In, the body of DNA eluents and nucleic acid absorption magnetic bead Product is than being 1:5-7.
CN201711431673.2A 2017-12-26 2017-12-26 Kit and method for extracting and purifying salmonella DNA from complex sample Active CN107988207B (en)

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Citations (5)

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Publication number Priority date Publication date Assignee Title
JP2007097551A (en) * 2005-10-07 2007-04-19 Daikin Ind Ltd Method for detecting microorganism
CN101921838A (en) * 2010-06-11 2010-12-22 江南大学 Method for detecting salmonella through PCR-DHPLC
CN102816850A (en) * 2012-08-28 2012-12-12 无锡中德伯尔生物技术有限公司 Method for simultaneously detecting salmonella typhimurium, escherichia coli O157:H7 and listeria monocytogenesis
CN104651496A (en) * 2015-01-19 2015-05-27 四川大学 Method for rapidly detecting salmonella based on immunomagnetic bead-multiplex PCR
CN106093377A (en) * 2016-08-12 2016-11-09 江苏福隆生物技术有限公司 A kind of test kit for the quick coupling of albumen, antibody, enzyme and nucleic acid and preparation method thereof

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2007097551A (en) * 2005-10-07 2007-04-19 Daikin Ind Ltd Method for detecting microorganism
CN101921838A (en) * 2010-06-11 2010-12-22 江南大学 Method for detecting salmonella through PCR-DHPLC
CN102816850A (en) * 2012-08-28 2012-12-12 无锡中德伯尔生物技术有限公司 Method for simultaneously detecting salmonella typhimurium, escherichia coli O157:H7 and listeria monocytogenesis
CN104651496A (en) * 2015-01-19 2015-05-27 四川大学 Method for rapidly detecting salmonella based on immunomagnetic bead-multiplex PCR
CN106093377A (en) * 2016-08-12 2016-11-09 江苏福隆生物技术有限公司 A kind of test kit for the quick coupling of albumen, antibody, enzyme and nucleic acid and preparation method thereof

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Title
左建民等: "表达EHV-1 gC的非致病性痘苗病毒MVA在重组MVA/DNA联合疫苗计划中的应用", 《国外医学》 *

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