CN106566779A - Recombinant yeast strain, construction method and application thereof - Google Patents
Recombinant yeast strain, construction method and application thereof Download PDFInfo
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Abstract
The invention relates to the technical field of gene engineering, and discloses a recombinant yeast strain, a construction method thereof and the application thereof. In the recombinant yeast strain, gal1, gal7, gal10 and ypl062w genes are knocked out, and the recombinant yeast strain comprises 6 gene segments which are integrated to the genome through yeast homologous recombination. On the above basis, the recombinant yeast strain is further integrated onto one gene segment of a yeast genome, so that a better recombinant yeast is obtained. According to the technical scheme of the invention, the yeast strain is constructed based on gene knock-out, and an optimized host cell for producing lycopene is provided. Meanwhile, functional genes crtE crtB and crtI of a specific source combination and used for the synthesis of lycopene, specific yeast endogenous genes and specific exogenous genes are selected. The above selected genes are integrated to the gene knock-out genome of the yeast strain, and then a brand-new recombinant strain capable of producing high-yield lycopene is obtained.
Description
Technical field
The present invention relates to gene engineering technology field, more particularly to a kind of restructuring yeast strains and its structure side
Method and application.
Background technology
Worldwide, with economic level and the raising to health demand, the security of food, trophism and function
Property receive more and more attention, therefore functional nutrient chemicals has become development trend, represents the new of contemporary food development
Trend, with wide market prospects.Lycopene is a kind of fat-soluble natural food colour, and class is belonged in chemical constitution recklessly
Radish element, possesses extremely strong oxidation resistance, is the focus that in recent years in the world functional food composition is studied.
The preparation of lycopene relies primarily on plant extract, chemical synthesis and Microbe synthesis, and first two method respectively has it
The deficiency of itself, Microbe synthesis are then with low cost, high yield and Product Safety, it is considered to be most promising method.Mesh
Before, in the research of Microbe synthesis lycopene, the Host Strains for being adopted focus primarily upon Escherichia coli and saccharomyces cerevisiae.
2011, Yeong-Su Kim et al. introduced three genes of synthesis lycopene in pantoea agglomerans source in Escherichia coli
CrtE, crtB and crtI, while raise the key gene in endogenous MEP approach and build heterologous MVA paths in intracellular, it is final logical
Cross the yield of lycopene that 1.35g/L (32mg/gDCW) is realized in fed batch fermentation optimization.2014, Tianjin industrial bio skill
The supply that art research institute Ma Yan and seminar pass through optimization Escherichia coli intracellular NADPH and ATP, and utilize ribosome bind site
Library screening obtains the recombination bacillus coli that a plant height produces lycopene, and its yield on fed batch fermentation tank is 3.52g/
L (50.6mg/g DCW), maximum output in the category recombinant bacterial strain that at present disclosure is reported.
Saccharomyces cerevisiae compares Escherichia coli as generally acknowledged safe mode microorganism, and its thalline vitamin, protein contain
Amount is high, can eat, medicinal and fodder yeast;Trispore Bruce mould is compared, its growth cycle is shorter and is more easy to culture.Cause
This, realizes that high yield of the lycopene in saccharomyces cerevisiae will represent great competitiveness in carotenoid industrialization.2014
That what is reported in year Bahieldin et al. bites summer spore Ou Wenshi in saccharomyces cerevisiae by the expression Jing codon optimizations of ADH2 promoters
The yield of lycopene only 3.3mg/gDCW of crtE, crtB and the crtI in bacterium source.2015, Zhejiang University was in Hong Wei seminars
The bifunctional enzyme crtYB in phaffiafhodozyma source is transformed by albumen orthogenesis means so as to lose lycopene cyclase
Encoding function, and only retain its coding phytoene synthetase function;Meanwhile, the crtE to phaffiafhodozyma source
Evolution is oriented, the catalytic performance of enzyme is improved;Again, by the copy number of adjustment crtE, crtB and crtI, a plant height is obtained
The dliploid recombinant Saccharomyces cerevisiae of lycopene is produced, its shaking flask yield reaches 159.56mg/L (23.23mg/gDCW), finally leads to
Fed batch fermentation optimization is crossed, the yield of lycopene reaches 1.61g/L (24.41mg/gDCW).Chinese patent
CN105087406A discloses a kind of restructuring yeast strains and its construction method and application, and it is by the way that yeast strain is knocked out
Gal1, gal7, gal10 or gal80 gene, and the gene constructed gene knockout yeast strains of ypl062w, then choose different next
Functional gene crtE, crtB and crtI of the synthesis lycopene in source, and specific yeast entogenous gene etc., Jing modularized designs
It is integrated on gene knockout yeast strain genome, obtains the recombinant bacterial strain of one plant of brand-new high yield lycopene, lycopene
Yield reach 30-45mg/gDCW;However, this synthesizes the highest of lycopene with the utilization recombination bacillus coli reported before this
Yield (50.6mg/g DCW) is compared and still have certain gap.
Chinese patent CN105420134A discloses a kind of restructuring yeast strains and its construction method and application, its pass through by
Yeast strain knocks out gal1, gal7, gal10 and ypl062w gene, and comprising on Jing yeast homologous recombination and integration to genome
3 genetic fragments, on its basis its also further knock out rox1 genes and be incorporated into 2 gene pieces on Yeast genome
Section, obtains more excellent recombination yeast, and the yield of lycopene is higher than 45mg/gDCW, reaches as high as 54.62mg/gDCW, not only excellent
Yeast engineering bacteria in patent CN105087406A, and higher than the lycopene maximum output of recombination bacillus coli instantly.
But, develop with saccharomyces cerevisiae and realize that the high yield of lycopene still has very big potentiality and space as host strain, it is worth
Researcher goes the product lycopene ability for further lifting recombination engineering.
The content of the invention
In view of this, it is an object of the invention to provide a kind of restructuring yeast strains so that the recombinant bacterial strain can be answered
In for the biosynthesis of lycopene, and high yield is kept, while providing construction method and the application of the recombinant bacterial strain.
For achieving the above object, the present invention provides following technical scheme:
A kind of restructuring yeast strains, it is characterised in that the Yeast genome knock out gal1, gal7, gal10,
Ypl062w, rox1 gene, and comprising the following genetic fragment on Jing yeast autologous recombination and integrations to its genome:
Yeast trp1 site upstream homologous sequences, CYC1 terminators, Bt crtI, GAL10 promoters, GAL1 promoters, Pa
The genetic fragment 1 that crtB, PGK1 terminator, yeast trp1 sites downstream homologous sequences are sequentially spliced;
Yeast leu2 site upstream homologous sequences, LEU2 marks, TDH2 terminators, ACT1 terminators, the HMG-CoA of truncation
Reductase gene tHMGR1, GAL10 promoter, GAL1 promoters, TmcrtE, GPM1 terminator, yeast leu2 sites downstreams are same
The genetic fragment 2 that source sequence is sequentially spliced;
TDH2 terminators and its upstream homologous sequence, DR-Kl URA3-DR nutritional labelings, CYC1 terminate in genetic fragment 2
ACT1 terminators and gene that downstream homologous sequence is sequentially spliced in son, Bt crtI, GAL7 promoters, genetic fragment 2
Fragment 3;
Yeast his3 site upstream homologous sequences, HIS3 marks, ENO2 terminators, ACT1 terminators, the HMG-CoA of truncation
Reductase gene tHMGR1, GAL10 promoter, GAL1 promoters, fusion BTS1-ERG20, FBA1 terminator, yeast
The genetic fragment 4 that his3 sites downstream homologous sequences are sequentially spliced;
Yeast YPRCdelta15 site upstream homologous sequences, DR-Kl URA3-DR nutritional labelings, CPS1 terminators, transcription
The genetic fragment that factor INO2, GAL1 promoter, saccharomyces cerevisiae YPRCdelta15 sites downstream homologous sequences are sequentially spliced
5;
Yeast YNRCdelta9 site upstream homologous sequences, GAL1 promoters, transcription factor INO2, CPS1 terminator, DR-
(the pattern of genetic fragment 6 that Kl URA3-DR nutritional labelings, yeast YNRCdelta9 sites downstream homologous sequences are sequentially spliced
Figure is shown in Fig. 1);
Wherein, gal1, gal7, gal10, ypl062w, rox1 gene and homologous recombination gene piece are knocked out in Yeast genome
After section 1-5, intermediate strains, restructuring yeast strains Jing autologous recombination and integration gene piece on the basis of intermediate strains are obtained
Obtain after section 6.The particular sequence of genetic fragment 1-5 of the present invention, Genetic elements, synthetic method and ideograph can be found in
Described in patent CN105420134A.
The present invention carries out the structure of Genetic elements, netic module by using specific yeast entogenous gene and foreign gene
Build, and be transferred on the Yeast genome for knocking out gal1, gal7, gal10, ypl062w, rox1 gene, realize recombinant bacterial strain kind
The synthesis output increased of Lycopene.
Wherein, in involved yeast amino acid tag, transcription factor, promoter and terminator, including but not limited to
CYC1 terminators, GAL10 promoters, GAL1 promoters, PGK1 terminators, ACT1 terminators, GPM1 terminators, LEU2 mark,
TDH2 terminators, FBA1 terminators, ENO2 terminators, HIS3 marks, CPS1 terminators, PGK1 promoters, transcription factor INO2,
The acquisition of said gene element can be obtained with Yeast genome as template by PCR amplifications;
In the present invention, the upstream and downstream homologous sequence of above-mentioned each Genetic elements and correlation is with Wine brewing yeast strain BY4741
Genome be template, design and synthesize suitable primer, by PCR amplification obtain;And LEU2 upstreams homologous sequence and LEU2
Mark is to expand from PCR on plasmid pRS405 in the lump, and HIS3 upstreams homologous sequence and HIS3 marks are in the lump from plasmid
The upper PCR of pRS313 are expanded.
Foreign gene involved in the present invention includes geranyl pyrophosphate (GGPP) synthase gene crtE, phytoene
Synthase gene crtB and Phytoene dehydrogenase gene crtI.Wherein the source of crtE is Taxus x media (Taxus
X media), it is abbreviated as Tm crtE;The source of crtB is pantoea agglomerans (Pantoea agglomerans), is abbreviated as Pa
crtB;The source of crtI is trispore Bruce mould (Blakeslea trispora), is abbreviated as Bt crtI;VHb is from saturating
The bright bacterium that quivers (Vitreoscilla stercoraria), said gene is codon optimization and suitably evades conventional restriction
Property restriction enzyme site after obtained by artificial synthesized.
Preferably, the genetic fragment 6 such as SEQ ID NO:Shown in 1.
Preferably, bacterial strain of the intermediate strains for deposit number CGMCC No.11748, the bacterial strain was in 2015 11
The moon is deposited in China Committee for Culture Collection of Microorganisms's common micro-organisms center on the 27th, and records in detail in patent
In CN105420134A;The present invention transformed gene fragment 6 can be obtained on the basis of the bacterial strain of deposit number CGMCC No.11748
New restructuring yeast strains.
Preferably, the yeast be saccharomyces cerevisiae, solution fat belong to yeast or Crewe dimension category yeast.In addition, it is also possible to
It is transformation bacterial strain by institute of the present invention with algae, mould (such as streptomycete etc.) and bacterium (such as Escherichia coli, bacillus subtilis etc.)
The Genetic elements and module of restriction are recombinated according to the resolved herxheimer-liked reaction path of these bacterial strains.
It is highly preferred that the saccharomyces cerevisiae is CEN.PK series saccharomyces cerevisiaes or BY series saccharomyces cerevisiaes.Further preferably
Ground, the CEN.PK series saccharomyces cerevisiae is saccharomyces cerevisiae CEN.PK2-1D.
On the basis of above-mentioned each technical scheme, preferably also include Jing yeast autologous recombination and integrations on its genome
Following genetic fragment:
Yeast YFLWtau1 site upstream homologous sequences, PGK1 promoters, from gene VHb, ACT1 of Vitreoscilla
The base that terminator, DR-Kl URA3-DR nutritional labelings, saccharomyces cerevisiae YFLWtau1 sites downstream homologous sequences are sequentially spliced
Because of fragment 7 (ideograph is shown in Fig. 1).It is further preferred that the genetic fragment 7 such as SEQ ID NO:Shown in 2.On this basis,
It is highly preferred that the bacterial strain is the bacterial strain that deposit number is CGMCC No.13013.
Restructuring yeast strains of the present invention can substantial amounts of synthesis lycopene, it is therefore present invention also offers described heavy
Application of the group yeast strain in production lycopene and the application in product of the production with lycopene as intermediate product.
Additionally, present invention also offers the construction method of the restructuring yeast strains, including:
Step 1, structure are by under yeast gal7 downstream of gene homologous sequences, DR-Kl URA3-DR nutritional labelings, gal1 genes
Trip homologous sequence be sequentially connected with knockout box fragment 1, by ypl062w upstream region of gene homologous sequences, kanMX resistance labels,
The knockout box fragment 2 that ypl062w downstream of gene homologous sequences are sequentially connected with, and build by the homologous sequence of yeast rox1 upstream region of gene
The knockout box fragment 3 that row, DR-Kl URA3-DR nutritional labelings, rox1 downstream of gene homologous sequences are sequentially connected with, using knockout box
Fragment 1-3 knocks out yeast gal1, gal7, gal10, ypl062w and rox1 gene by the restructuring of yeast autologous, obtains gene
Yeast is knocked out, it is standby;
By yeast trp1 site upstream homologous sequences, CYC1 terminators, Bt crtI, GAL10 promoters, GAL1 promoters,
Pa crtB, PGK1 terminators, yeast trp1 sites downstream homologous sequences sequentially splice, and obtain genetic fragment 1, i.e. trp1 sites
Upstream homologous sequence-TCYC1-crtI-PGAL10-PGAL1-crtB-TPGK1- trp1 sites downstream homologous sequences, it is standby;
By yeast leu2 site upstream homologous sequences, LEU2 marks, TDH2 terminators, ACT1 terminators, truncate HMG-
Under CoA reductase gene tHMGR1, GAL10 promoters, GAL1 promoters, Tm crtE, GPM1 terminators, yeast leu2 sites
Trip homologous sequence sequentially splices, and obtains genetic fragment 2, i.e. leu2 site upstreams homologous sequence-LEU2-TTDH2-TACT1-tHMGR1-
PGAL10-PGAL1-crtE-TGPM1- leu2 sites downstream homologous sequences, it is standby;
By TDH2 terminators in genetic fragment 2 and its upstream homologous sequence, DR-Kl URA3-DR nutritional labelings, CYC1 ends
Only ACT1 terminators and downstream homologous sequence sequentially splices in son, Bt crtI, GAL7 promoters, genetic fragment 2, obtain base
Because of fragment 3, i.e. TDH2 terminators and its upstream homologous sequence-DR-Kl URA3-DR-TCYC1-Bt crtI-PGAL7-TACT1-ACT1
Terminator and downstream homologous sequence, it is standby;
Yeast entogenous FPP synthase gene ERG20 and GGPP synthase gene BTS1 is attached, fusion is obtained
BTS1-ERG20, then by yeast his3 site upstream homologous sequences, HIS3 marks, ENO2 terminators, ACT1 terminators, truncation
HMG-CoA reductase gene tHMGR1, GAL10 promoter, GAL1 promoters, fusion BTS1-ERG20, FBA1 terminate
Son, yeast his3 sites downstream homologous sequences sequentially splice, and acquisition genetic fragment 4, i.e. his3 site upstreams homologous sequence-
HIS3-TENO2-TACT1-tHMGR1-PGAL10-PGAL1-(BTS1-ERG20)-TFBA1- his3 sites downstream homologous sequences, it is standby;
By yeast YPRCdelta15 site upstream homologous sequences, DR-KlURA3-DR nutritional labelings, CPS1 terminators, turn
Record factor INO2, GAL1 promoter, saccharomyces cerevisiae YPRCdelta15 sites downstream homologous sequences sequentially splice, and obtain gene piece
Section 5, i.e. YPRCdelta15 site upstreams homologous sequence-DR-KlURA3-DR-TCPS1-INO2-PGAL1- YPRCdelta15 sites
Downstream homologous sequence, it is standby;
By yeast YNRCdelta9 site upstream homologous sequences, GAL1 promoters, transcription factor INO2, CPS1 terminator,
DR-Kl URA3-DR nutritional labelings, yeast YNRCdelta9 sites downstream homologous sequences sequentially splice, and obtain genetic fragment 6, i.e.,
YNRCdelta9 site upstream homologous sequence-PGAL1-INO2-TCPS1- DR-Kl URA3-DR-YNRCdelta9 sites downstreams are homologous
Sequence, it is standby;
Step 2, genetic fragment 1 is proceeded in the gene knockout yeast, by genetic fragment 1 by Li-acetate method
There is restructuring with trp1 sites on gene knockout Yeast genome and be incorporated into genome in trp1 sites upstream and downstream homologous sequence
On;
Genetic fragment 2 is proceeded in the gene knockout yeast by Li-acetate method, by leu2 sites in genetic fragment 2
There is restructuring with leu2 sites on gene knockout Yeast genome and be incorporated on genome in upstream and downstream homologous sequence;
Genetic fragment 3 is continued through into Li-acetate method to be transformed in the gene knockout yeast of transgene fragment 2, is passed through
TDH2 terminators and its upstream homologous sequence in genetic fragment 3, ACT1 terminators and homologous sequence downstream, with the base integrated
The clpp gene of integrator gene fragment 2 is inserted into because of the TDH2 terminators in fragment 2 and the generation restructuring of ACT1 terminators site
Except on Yeast genome;
Genetic fragment 4 is proceeded in the gene knockout yeast by Li-acetate method, by his3 sites in genetic fragment 4
There is restructuring with his3 sites on gene knockout Yeast genome and be incorporated on genome in upstream and downstream homologous sequence;
Genetic fragment 5 is transformed in gene knockout yeast by Li-acetate method, by genetic fragment 5
On YPRCdelta15 sites upstream and downstream homologous sequence and gene knockout Yeast genome YPRCdelta15 sites there is restructuring and
It is incorporated on genome;
Intermediate strains are obtained after genetic fragment 1-5 is transformed in gene knockout yeast by Li-acetate method;
Genetic fragment 6 is transformed in intermediate strains by Li-acetate method, by YNRCdelta9 sites in genetic fragment 6
There is restructuring and be incorporated on genome in upstream and downstream homologous sequence, obtain with YNRCdelta9 sites on intermediate strains genome
Restructuring yeast strains.
Preferably, the construction method also includes:
Genetic fragment 7 is built, and genetic fragment 7 is proceeded to into acquisition restructuring yeast strains;
Specifically, by yeast YFLWtau1 site upstream homologous sequences, PGK1 promoters, from the gene of Vitreoscilla
VHb, ACT1 terminator, DR-KlURA3-DR nutritional labelings, saccharomyces cerevisiae YFLWtau1 sites downstream homologous sequences sequentially splice,
Obtain genetic fragment 7, i.e. YFLWtau1 site upstreams homologous sequence-PPGK1-VHb-TACT1- DR-KlURA3-DR-YFLWtau1 positions
Point downstream homologous sequence;
Genetic fragment 7 is transformed into into transgene fragment 1-6 or the base of transgene fragment 1-5 by Li-acetate method
In because knocking out yeast, by YFLWtau1 sites upstream and downstream homologous sequence in genetic fragment 7 and gene knockout Yeast genome
There is restructuring and be incorporated on genome in YFLWtau1 sites.
Gene knockout yeast (including the detailed structure of each knockout box) of the present invention, the concrete structure of genetic fragment 1-5
Method and detailed record situation can refer to the record of patent CN105420134A, and here of the present invention is by the structure of genetic fragment 6 and 7
Build situation and provide as follows:
Amplification yeast YNRCdelta9 site upstream 256bp homologous sequences, GAL1 promoters, transcription factor INO2, CPS1
Terminator, DR-Kl URA3-DR nutritional labelings, yeast YNRCdelta9 sites downstream 267bp homologous sequences, sequentially pass through OE-
PCR method is stitched together, and genetic fragment 6 of the two ends comprising PmeI restriction enzyme sites is obtained, by fragment obtained above and flat end
Carrier pJET1.2 connects, and obtains the integrated plasmid of genetic fragment 6 and is designated as pYNRCdelta9-PGAL1-INO2-TCPS1-DR-Kl
URA3-DR, PmeI digestion obtains genetic fragment 6, i.e. YNRCdelta9 site upstreams homologous sequence-PGAL1-INO2-TCPS1-DR-
Kl URA3-DR-YNRCdelta9 sites downstream homologous sequences, nucleotide sequence such as SEQ ID NO:Shown in 1.
Amplification yeast YFLWtau1 site upstream 297bp homologous sequences, PGK1 promoters, from the gene of Vitreoscilla
VHb, ACT1 terminator, DR-Kl URA3-DR nutritional labelings, saccharomyces cerevisiae YFLWtau1 sites downstream 208bp homologous sequences, it is suitable
It is secondary to be stitched together by OE-PCR methods, genetic fragment 7 of the two ends comprising PmeI restriction enzyme sites is obtained, by fragment obtained above
It is connected with flat ends vector pJET1.2, obtains the integrated plasmid of genetic fragment 7 and be designated as pYFLWtau1-PPGK1-VHb-TACT1-DR-Kl
URA3-DR, PmeI digestion obtains genetic fragment 7, i.e. YFLWtau1 site upstreams homologous sequence-PPGK1-VHb-TACT1-DR-
KlURA3-DR-YFLWtau1 sites downstream homologous sequences, nucleotide sequence such as SEQ ID NO:Shown in 2.
Preferably, in construction method, the yeast is saccharomyces cerevisiae, solution fat belongs to yeast or Crewe dimension belongs to yeast.Remove
Outside this, it is also possible to algae, mould (such as streptomycete) and bacterium (such as Escherichia coli, bacillus subtilis) as transformation bacterium
The herxheimer-liked reaction path that strain has been resolved the Genetic elements that limited of the present invention and module according to these bacterial strains come
Restructuring.It is highly preferred that the saccharomyces cerevisiae is CEN.PK series saccharomyces cerevisiaes or BY series saccharomyces cerevisiaes.It is further preferred that
The CEN.PK series saccharomyces cerevisiae is saccharomyces cerevisiae CEN.PK2-1D.
When restructuring yeast strains of the present invention are used to produce lycopene, yield of lycopene is 60.97mg/gDCW
(356.22mg/L) -66.14mg/gDCW (376.78mg/L), yield is significantly higher than recombination yeast in CN105420134A patents
The maximum output of the 54.62mg/gDCW (318.13mg/L) of bacterial strain.
According to the related application of bacterial strain of the present invention, present invention also offers a kind of method for producing lycopene, incites somebody to action
Bacterial strain of the present invention is inoculated in fermented and cultured in fermentation medium Jing after seed culture medium culture activation, collects after fermented and cultured
Somatic cells extract lycopene.
More specifically, after inoculation of the present invention is cultivated in 5mL seed culture mediums, with initial cell concentration
OD600=0.2 transfers in fresh 25mL seed culture mediums culture to mid log phase, with initial cell concentration OD600=0.5
It is inoculated in 50mL fermentation mediums and cultivates, collects thalline cell extraction lycopene after fermented and cultured.
Wherein, preferably, the seed culture medium is 20g/L glucose, 20g/L peptones, 10g/L yeast extracts,
50mg/L uracils, remaining is water.
Preferably, the fermentation medium is 20g/L glucose, 20g/L peptones, 10g/L yeast extracts, 20mg/L
Uracil, 10g/L D- (+)-galactolipin, remaining is water.
Preferably, the culture is to cultivate under the conditions of 30 DEG C, 250rpm.
From above technical scheme, the present invention builds gene knockout yeast strain, and to produce lycopene optimization is provided
Host cell, choose functional gene crtE, crtB and crtI of the synthesis lycopene of particular source combination, and specific ferment
Female endogenous gene and foreign gene etc., Jing modularized designs are integrated on gene knockout yeast strain genome, obtain one plant
The recombinant bacterial strain of brand-new high yield lycopene.
Biological deposits explanation
SyBE_Sc0014D018, Classification And Nomenclature:Saccharomyces cerevisiae, Saccharomyces cerevisiae are in September, 2016
China Committee for Culture Collection of Microorganisms's common micro-organisms center is deposited within 19th, address is Chaoyang District, Beijing City North Star west
The institute 3 of road 1, Institute of Microorganism, Academia Sinica, deposit number is CGMCC No.13013.
Description of the drawings
Fig. 1 show the Genetic elements ideograph of genetic fragment 6;Wherein, two ends YNRCdelta9-L, YNRCdelta9-R
Yeast YNRCdelta9 sites upstream and downstream homologous sequence is represented respectively;
Fig. 2 show the Genetic elements ideograph of genetic fragment 7;Wherein, two ends YFLWtau1-L, YFLWtau1-R difference
Represent yeast YFLWtau1 sites upstream and downstream homologous sequence;
Fig. 3 show SyBE_Sc0014D014 bacterial strains in patent CN105420134A, SyBE_Sc0014D017 of the present invention
With the yield of lycopene column diagram of SyBE_Sc0014D018 bacterial strains;
Fig. 4 show the growth of SyBE_Sc0014D018 bacterial strains shake flask fermentation of the present invention and yield of lycopene curve.
Specific embodiment
The invention discloses a kind of restructuring yeast strains and its construction method and application, those skilled in the art can use for reference
Present disclosure, is suitably modified technological parameter realization.Specifically, all similar replacements and change are to this area skill
It is it will be apparent that they are considered as being included in the present invention for art personnel.The method of the invention and application have passed through
Preferred embodiment is described, and related personnel substantially can be in without departing from present invention, spirit and scope to described herein
Methods and applications be modified or suitably change with combining realizing and apply the technology of the present invention.
Involved in the present invention some plasmid vectors, bacterial strain are commercially available, such as pJET1.2 plasmid vectors purchase
From the CloneJET PCR Cloning Kit of Thermo Scientific companies, #K1231;Wine brewing yeast strain CEN.PK2-
1D buys the EUROSCARF from Germany Scientific Research and Development GmbH, and strain number is
30000A and 30000B;Saccharomyces cerevisiae BY4742 is mono- to strike storehouse bacterial strain YPL062W purchases from U.S. Thermo Fisher
Scientific companies;Plasmid pRS405, pRS313 and saccharomyces cerevisiae BY4741 are from BioVector China plasmid vector bacterium
The Type Tissue Collection purchase of strain cytogene collection-NTCC countries.Above-mentioned plasmid map and sequence can be found in
Patent CN105420134A is recorded.
For the present invention builds each Genetic elements employed in restructuring yeast strains, such as amino acid tag, label, endogenous
Gene, foreign gene etc. are it is known in the art that those skilled in the art know its particular sequence.It is of the invention for convenience of understanding,
The present invention to each genetic fragment in each Genetic elements illustrate:
Box fragment 1 is knocked out (referring to the SEQ ID NO in patent CN105420134A:7):1-40bp is gal7 downstream of gene
40bp homologous sequences;41-1615bp is DR-Kl URA3-DR nutritional labeling sequences;1616-1655bp is gal1 downstream of gene
40bp homologous sequences.
Box fragment 2 is knocked out (referring to the SEQ ID NO in patent CN105420134A:8):1-394bp is ypl062w genes
Upstream 394bp homologous sequences;395-1864bp is kanMX resistance sequence labels;1865-2181bp is ypl062w downstream of gene
317bp homologous sequences.
Box fragment 3 is knocked out (referring to the SEQ ID NO in patent CN105420134A:9):1-40bp is rox1 upstream region of gene
40bp homologous sequences;41-1615bp is DR-Kl URA3-DR nutritional labeling sequences;1616-1655bp is rox1 downstream of gene
40bp homologous sequences.
Genetic fragment 1 is (referring to the SEQ ID NO in patent CN105420134A:1):1-631bp is trp1 site upstreams
631bp homologous sequences;632-637bp is BamHI restriction enzyme sites;638-640bp is meaningless sequence;641-646bp is
HindIII restriction enzyme sites;647-901bp is CYC1 terminator sequences;902-2650bp is Bt crtI sequences;2651-3318bp
For GAL10-GAL1 two-way startup subsequences;3319-4248bp is Pa crtB sequences;4249-4523bp is PGK1 terminator sequences
Row;4524-4529bp is XhoI restriction enzyme sites;4530-5262bp is the homologous 733bp sequences of trp1 sites downstreams.
Genetic fragment 2 is (referring to the SEQ ID NO in patent CN105420134A:2):1-561bp is leu2 site upstreams
Homologous 561bp sequences;562-1656bp is LEU2 marks;1657-2056bp is TDH2 terminator sequences;2057-2062bp is
BamHI restriction enzyme sites;2063-2349bp is ACT1 terminator sequences;2350-3858bp is the HMG-CoA reductase base for truncating
Because of tHMGR1;3859-4526bp is GAL10-GAL1 two-way startup subsequences;4527-5708bp is Tm crtE genes;5709-
6108bp is GPM1 terminator sequences;6109-6114bp is XhoI restriction enzyme sites;6115-6698bp is that leu2 sites downstreams are same
Source 584bp sequences.
Genetic fragment 3 is (referring to the SEQ ID NO in patent CN105420134A:3):1-869bp be TDH2 terminators and
Its upstream homologous sequence 869bp;870-2444bp is DR-Kl URA3-DR nutritional labeling sequences;2445-2699bp is CYC1 ends
Only subsequence;2700-4448bp is Bt crtI sequences;4449-4948bp is GAL7 promoters;4949-5303bp is ACT1 ends
Only son and downstream homologous sequence 355bp.
Genetic fragment 4 is (referring to the SEQ ID NO in patent CN105420134A:4):1-312bp is his3 site upstreams
312bp homologous sequences;313-975bp is HIS3 marks;976-1375bp is ENO2 terminators;1376-1381bp is BamHI enzymes
Enzyme site;1382-1668bp is ACT1 terminator sequences;1669-3177bp is the HMG-CoA reductase gene for truncating
tHMGR1;3178-3845bp is GAL10-GAL1 two-way startup subsequences;3846-5921bp is fusion BTS1-ERG20;
5922-6121bp is FBA1 terminator sequences;6122-6127bp is PstI restriction enzyme sites;6128-6705bp is under his3 sites
Trip 578bp homologous sequences.
Genetic fragment 5 is (referring to the SEQ ID NO in patent CN105420134A:5):1-606bp is YPRCdelta15 positions
Point upstream 606bp homologous sequences;607-2181bp is DR-Kl URA3-DR nutritional labeling sequences;2182-2372bp is CPS1 ends
Only subsequence;2373-3287bp is transcription factor INO2 sequence;3288-3744bp is GAL1 promoter sequences;3745-
4103bp is YPRCdelta15 sites downstream 359bp homologous sequences.
(the SEQ ID NO of the present invention of genetic fragment 6:Shown in 1):1-256bp is that YPRCdelta9 site upstream 256bp are homologous
Sequence;257-713bp is GAL1 promoter sequences;714-1634bp is transcription factor INO2 sequence;1635-1825bp is CPS1
Terminator sequence;1826-3373bp is DR-KlURA3-DR nutritional labeling sequences;3374-3640bp is YPRCdelta9 sites
Downstream 267bp homologous sequences;
(the SEQ ID NO of the present invention of genetic fragment 7:Shown in 2):1-297bp is the homologous sequences of YFLWtau1 site upstream 297bp
Row;298-1075bp is PGK1 promoter sequences;1076-1516bp is the gene VHb sequences from Vitreoscilla;1517-
1803bp is ACT1 terminator sequences;1804-3351bp is DR-Kl URA3-DR nutritional labeling sequences;3352-3559bp is
YFLWtau1 sites downstream 208bp homologous sequences;
URA3 is Kluyveromyces lactis source (Kluyveromyces in DR-Kl URA3-DR nutritional labeling sequences
Lactis, Kl).
After the particular sequence for knowing above-mentioned each Genetic elements, those skilled in the art can be according to conventional primer design principle
Carry out amplification and OE-PCR splicings.Meanwhile, SD culture mediums of the present invention are a kind of trainings commonly used in yeast screening assay field
Foster base, according to yeast have which gene defect and specially delete on the composition of minimal medium a certain composition or it is several into
Divide to realize filtering out aimed strain.
It is of the invention with saccharomyces cerevisiae CEN.PK2-1D as starting strain according to technical solution of the present invention and preferred version,
General introduction recombinant bacterial strain building process:
1). box fragment 1 will be knocked out and proceed to CEN.PK2-1D, knock out gal1, gal7, gal10 gene, obtained strains are named as
SyBE_Sc0014D003;
2). box fragment 2 will be knocked out and proceed to SyBE_Sc0014D003, knock out ypl062w genes, obtained strains are named as
SyBE_Sc0014D004;
3). genetic fragment 1 is proceeded to into SyBE_Sc0014D004, obtained strains are named as SyBE_Sc0014D005;
4). genetic fragment 2 is proceeded to into SyBE_Sc0014D005, obtained strains are named as SyBE_Sc0014D006;
5). genetic fragment 3 is proceeded to into SyBE_Sc0014D006, obtained strains are named as SyBE_Sc0014D007;
6). genetic fragment 4 is proceeded to into SyBE_Sc0014D007, obtained strains are named as SyBE_Sc0014D009;
7). box fragment 3 will be knocked out and proceed to SyBE_Sc0014D009, knock out rox1 genes, obtained strains are named as SyBE_
Sc0014D011;
8). genetic fragment 5 is proceeded to into SyBE_Sc0014D011, it is (middle that obtained strains are named as SyBE_Sc0014D014
Bacterial strain);
9). genetic fragment 6 is proceeded to into SyBE_Sc0014D014, obtained strains are named as SyBE_Sc0014D017;
10). genetic fragment 7 is proceeded to into SyBE_Sc0014D017, obtained strains are named as SyBE_Sc0014D018;
Wherein, SyBE_Sc0014D014 is deposited in Chinese microorganism strain preservation management committee on November 27th, 2015
Member's meeting common micro-organisms center, deposit number is CGMCC No.11748.
Additionally, can insert one section in any site for not affecting its normal function in the bacterial strain constructed by the present invention being used for
Recognize the sequence of the bacterial strain, it functions as " watermark " or " bar code ", prevent build recombinant bacterial strain leak and cannot be fast
Victory identification, described recognition sequence can be any suitable sequence of current area, and it does not interfere with bacterial strain normal function, can use
Detect after corresponding amplimer amplification.Described recognition sequence is specially:Two ends are tag sequences (amplimer), middle
The nucleotide sequence of one or more amino acid in encode C, M, E, P, S, A, H, V, N, W, T, Y, G, I, D, overall size is
180-220bp, the insertion method of recognition sequence adopts conventional method.
With reference to embodiment, the present invention is expanded on further.
Embodiment 1:The structure of gene knock-out bacterial strain
With saccharomyces cerevisiae CEN.PK2-1D as starting strain, four gene knock-out bacterial strain CEN.PK2-1C △ gal1, △ are built
gal7,△gal10::DR,△ypl062w::kanMX.Detailed process is as follows:
△ gal1, △ gal7, △ gal10 are built first::DR-Kl URA3-DR knock out box, that is, box fragment 1 is knocked out, with matter
Grain pWJ1042 is template, design upstream and downstream primer PCR amplified band gene upstream and downstream 40bp homology arms and DR-Kl URA3-DR
The knockout box fragment of nutritional labeling, the homologous recombination machinery using yeast itself is whole by Li-acetate method yeast conversion by the fragment
Close on Yeast genome, using SD-URA solid panels (synthetic yeast nitrogen source YNB 6.7g/L, glucose 20g/L, list after conversion
The kilnitamin powder 2g/L of scarce uracil, 2% agar powder) screened, the transformant for obtaining is carried after point pure culture
Take Yeast genome and enter performing PCR checking, to verifying that correct recombinant bacterial strain is applied with a little bacterium solution is taken after YPD fluid nutrient medium cultures
Cloth 5- fluororotic acids (5-FOA) solid panel (respectively there is the direct repeat DR of 143bp at DR-KlURA3-DR nutritional labelings two ends,
Yeast itself can occur homologous recombination and delete URA3 genes and one of DR using this two sections of identical sequences;YPD is trained
Foster gene is that without this screening pressure of amino acid nutrient defect, the saccharomycete of such spontaneous deletion URA3 can grow.So
Screened with 5-FOA afterwards, because the bacterial strain containing URA3 can make 5-FOA become paired under the enzyme effect of URA3 gene codes
The virose material of cell, makes yeast cells to grow on the culture medium containing 5-FOA, and so as to filter out URA genes are deleted
Bacterium), genome extracted after point pure culture of picking single bacterium colony enter performing PCR checking screening and deleted by spontaneous restructuring between DR sequences
The correct bacterial strain of URA3 genes, i.e. three gene knock-out bacterial strains, are named as SyBE_Sc0014D003.Knock out gal1, gal7, gal10
Bacterial strain will not metabolism D- galactolipins, such that it is able to maintain intracellular inducer galactose concentration constant, realize efficiently induction.
Then, △ ypl062w are built on the basis of three gene knock-out bacterial strain SyBE_Sc0014D003::KanMX is knocked out
Box, with the mono- genomes for singly striking bacterial strain YPL062W struck in storehouse of BY4742 as template, design upstream and downstream primer PCR amplification tape base
Because of YPL062W upstream and downstream homologous sequence and the knockout box fragment 2 of kanMX resistance labels, the fragment is integrated by yeast conversion
To on Yeast genome, bacterial strain (kanMX resistances are struck in the YPD solid panels screening four after conversion using the resistances of G418 containing 200mg/L
Label can produce resistance to this antibiotic of Geneticin G418, so as to select successful knockout gene using G418 screens
The bacterium of ypl062w), the transformant for obtaining is extracted genome after point pure culture and enters performing PCR checking, to verifying correct restructuring
Bacterial strain preserves glycerol stock, and is named as SyBE_Sc0014D004.
Embodiment 2:The structure of genetic fragment 1
Amplification CYC1 terminators, Bt crtI, GAL10 promoters, GAL1 promoters, Pa crtB, PGK1 terminator and suitable
It is secondary to be stitched together by OE-PCR methods, obtain fragment T of the two ends comprising HindIII and XhoI restriction enzyme sitesCYC1-crtI-
PGAL10-PGAL1-crtB-TPGK1;
Meanwhile, the homologous 631bp sequences of amplification yeast trp1 site upstreams, the homologous 733bp sequences of yeast trp1 sites downstreams
And sequentially pass through OE-PCR methods and be stitched together, two ends are obtained comprising SacI and ApaI restriction enzyme sites, and in yeast trp1 sites
Fragment comprising HindIII and XhoI restriction enzyme sites between the homologous sequence of upstream and downstream, then by SacI and ApaI restriction enzyme sites
Carrier pRS405 is connected into, TRP1 integrated plasmid pRS405-TRP are obtained, by fragment T obtained aboveCYC1-crtI-PGAL10-
PGAL1-crtB-TPGK1It is attached by HindIII and XhoI restriction enzyme sites with pRS405-TRP plasmids, obtains genetic fragment 1
Integrated plasmid, is designated as pRS405-TRP-TCYC1-crtI-PGAL10-PGAL1-crtB-TPGK1;
Integrated plasmid is transformed in E. coli competent DH5 α, bacterium colony PCR screening, upgrading grain carry out digestion verification and
Sequence verification, to guarantee that purpose fragment connection is correct and base sequence is not undergone mutation.
After checking is correct, cut with SacI and ApaI double enzyme sites respectively, obtain genetic fragment 1, nucleotide sequence ginseng
The SEQ ID NO seen in patent CN105420134A:Shown in 1.
Embodiment 3:The structure of genetic fragment 2
By ACT1 terminators, HMG-CoA reductase gene tHMGR1, GAL10 promoter, GAL1 promoters, the TM that truncate
CrtE, GPM1 terminator sequentially passes through OE-PCR methods and is stitched together, and obtains piece of the two ends comprising BamHI and XhoI restriction enzyme sites
Section TACT1-tHMGR1-PGAL10-PGAL1-crtE-TGPM1;Meanwhile, the homologous 561bp sequences of yeast leu2 site upstreams, LEU2 are marked
Note, TDH2 terminators, the homologous 584bp sequences of yeast leu2 sites downstreams sequentially pass through OE-PCR methods and are stitched together, and obtain two
End includes SacI and ApaI restriction enzyme sites, and BamHI is included between TDH2 terminators, yeast leu2 sites downstream homologous sequences
With the fragment of XhoI restriction enzyme sites, carrier pRS405 is connected into by SacI and ApaI restriction enzyme sites, obtains LEU2 integrated plasmids
pRS405-LEU.By above-mentioned fragment T for obtainingACT1-tHMGR1-PGAL10-PGAL1-crtE-TGPM1Pass through with pRS405-LEU plasmids
BamHI and XhoI restriction enzyme sites are attached, and obtain the integrated plasmid of genetic fragment 2, are designated as pRS405-LEU-TACT1-tHMGR1-
PGAL10-PGAL1-crtE-TGPM1。
Integrated plasmid is transformed in E. coli competent DH5 α, bacterium colony PCR screening, upgrading grain carry out digestion verification and
Sequence verification, to guarantee that purpose fragment connection is correct and base sequence is not undergone mutation.
After checking is correct, cut with SacI and ApaI double enzyme sites respectively, obtain genetic fragment 2, leu2 site upstreams
Homologous sequence-LEU2-TTDH2-TACT1-tHMGR1-PGAL10-PGAL1-crtE-TGPM1- leu2 sites downstream homologous sequences, nucleotides
Sequence is referring to the SEQ ID NO in patent CN105420134A:Shown in 2.
Embodiment 4:The structure of genetic fragment 3
TDH2 terminators and its upstream 869bp homologous sequences in amplification gene fragment 2, ACT1 terminators and downstream
355bp homologous sequences, then terminate TDH2 terminators and its upstream homologous sequence, DR-KlURA3-DR nutritional labelings, CYC1
ACT1 terminators and downstream homologous sequence sequentially passes through OE-PCR methods in son, Bt crtI, GAL7 promoters, genetic fragment 2
It is stitched together, obtains genetic fragment 3 of the two ends comprising PmeI restriction enzyme sites, i.e. TDH2 terminators and its upstream homologous sequence-DR-
KlURA3-DR-TCYC1-Bt crtI-PGAL7- ACT1 terminators and downstream homologous sequence, are connected with flat ends vector pJET1.2
The integrated plasmid of genetic fragment 3 is obtained, pleu-DR-Kl URA3-DR-T are designated asCYC1-BtcrtI-PGAL7。
Integrated plasmid is transformed in E. coli competent DH5 α, bacterium colony PCR screening, upgrading grain carry out digestion verification and
Sequence verification, to guarantee that purpose fragment connection is correct and base sequence is not undergone mutation.
After checking is correct, cut with PmeI restriction enzyme sites, obtain genetic fragment 3, nucleotide sequence is referring to patent
SEQ ID NO in CN105420134A:Shown in 3.
Embodiment 5:The structure of genetic fragment 4
Yeast entogenous FPP synthase gene ERG20 and GGPP synthase gene BTS1 is carried out into amalgamation and expression, by OE-PCR side
The C-terminal of BTS1 is connected to form fusion BTS1- by method with GGGS linker (GGTGGTGGTTCT) with the N-terminal of ERG20
ERG20;T is expanded from embodiment 4 on LEU2 integrated plasmids pRS405-LEUACT1-tHMGR1-PGAL10-PGAL1Fragment;
By fragment TACT1-tHMGR1-PGAL10-PGAL1, fusion BTS1-ERG20, FBA1 terminator pass through OE-PCR side
Method is stitched together, and obtains fragment T of the two ends comprising BamHI and PstI restriction enzyme sitesACT1-tHMGR1-PGAL10-PGAL1-(BTS1-
ERG20)-TFBA1;Meanwhile, PCR expands respectively the homologous 312bp sequences of yeast his3 site upstreams, HIS3 marks, ENO2 terminators
And the homologous 578bp sequences of yeast his3 sites downstreams, and sequentially spliced by OE-PCR methods, obtain two ends comprising SacI and
ApaI restriction enzyme sites, and BamHI and PstI digestions position is included between ENO2 terminators, yeast his3 sites downstream homologous sequences
The fragment of point, by SacI and ApaI restriction enzyme sites carrier pRS405 is connected into, and obtains HIS3 integrated plasmid pRS405-HIS.Will
Above-mentioned fragment T for arrivingACT1-tHMGR1-PGAL10-PGAL1-(BTS1-ERG20)-TFBA1With pRS405-HIS plasmids by BamHI and
PstI restriction enzyme sites are attached, and obtain the integrated plasmid of genetic fragment 4, are designated as pRS405-HIS-TACT1-tHMGR1-PGAL10-
PGAL1-(BTS1-ERG20)-TFBA1;
Integrated plasmid is transformed in E. coli competent DH5 α, bacterium colony PCR screening, upgrading grain carry out digestion verification and
Sequence verification, to guarantee that purpose fragment connection is correct and base sequence is not undergone mutation.
After checking is correct, cut with SacI and ApaI double digestions, obtain genetic fragment 4, the i.e. homologous sequence of his3 site upstreams
Row-HIS3-TACT1-tHMGR1-PGAL10-PGAL1-(BTS1-ERG20)-TFBA1- his3 sites downstream homologous sequences, nucleotides sequence
Row are referring to the SEQ ID NO in patent CN105420134A:Shown in 4.
Embodiment 6:The structure of genetic fragment 5
Amplification yeast YPRCdelta15 site upstream 606bp homologous sequences, DR-Kl URA3-DR nutritional labelings, CPS1 ends
Only son, transcription factor INO2, GAL1 promoter, saccharomyces cerevisiae YPRCdelta15 sites downstream 359bp homologous sequences are sequentially passed through
OE-PCR methods are stitched together, and obtain genetic fragment 5 of the two ends comprising PmeI restriction enzyme sites, i.e. YPRCdelta15 site upstreams
Homologous sequence-DR-KlURA3-DR-TCPS1-INO2-PGAL1- YPRCdelta15 sites downstream homologous sequences, will be obtained above
Fragment is connected with flat ends vector pJET1.2, obtains the integrated plasmid of genetic fragment 5 and is designated as pYPRCdelta15-DR-KlURA3-
DR-TCPS1-INO2-PGAL1。
Integrated plasmid is transformed in E. coli competent DH5 α, bacterium colony PCR screening, upgrading grain carry out digestion verification and
Sequence verification, to guarantee that purpose fragment connection is correct and base sequence is not undergone mutation.
After checking is correct, cut with PmeI restriction enzyme sites, obtain genetic fragment 5, nucleotide sequence is referring to patent
SEQ ID NO in CN105420134A:Shown in 5.
Embodiment 7:The structure of genetic fragment 6
Amplification yeast YNRCdelta9 site upstream 256bp homologous sequences, GAL1 promoters, transcription factor INO2, CPS1
Terminator, DR-Kl URA3-DR nutritional labelings, yeast YNRCdelta9 sites downstream 267bp homologous sequences, sequentially pass through OE-
PCR method is stitched together, and genetic fragment 6 of the two ends comprising PmeI restriction enzyme sites is obtained, by fragment obtained above and flat end
Carrier pJET1.2 connects, and obtains the integrated plasmid of genetic fragment 6 and is designated as pYNRCdelta9-PGAL1-INO2-TCPS1-DR-Kl
URA3-DR;
Integrated plasmid is transformed in E. coli competent DH5 α, bacterium colony PCR screening, upgrading grain carry out digestion verification and
Sequence verification, to guarantee that purpose fragment connection is correct and base sequence is not undergone mutation.
After checking is correct, cut with PmeI restriction enzyme sites, obtain genetic fragment 6, nucleotide sequence is referring in the present invention
SEQ ID NO:Shown in 1.
Embodiment 8:The structure of genetic fragment 7
Amplification yeast YFLWtau1 site upstream 297bp homologous sequences, PGK1 promoters, from the gene of Vitreoscilla
VHb, ACT1 terminator, DR-Kl URA3-DR nutritional labelings, saccharomyces cerevisiae YFLWtau1 sites downstream 208bp homologous sequences, it is suitable
It is secondary to be stitched together by OE-PCR methods, genetic fragment 7 of the two ends comprising PmeI restriction enzyme sites is obtained, by fragment obtained above
It is connected with flat ends vector pJET1.2, obtains the integrated plasmid of genetic fragment 7 and be designated as pYFLWtau1-PPGK1-VHb-TACT1-DR-Kl
URA3-DR;
Integrated plasmid is transformed in E. coli competent DH5 α, bacterium colony PCR screening, upgrading grain carry out digestion verification and
Sequence verification, to guarantee that purpose fragment connection is correct and base sequence is not undergone mutation.
After checking is correct, cut with PmeI restriction enzyme sites, obtain genetic fragment 7, nucleotide sequence is referring in the present invention
SEQ ID NO:Shown in 2.
Embodiment 9:Genetic fragment 1-2 construction and integration recombinant Saccharomyces cerevisiae CEN.PK2-1D
Fragment is converted four gene knockout yeast strain SyBE_Sc0014D004 by genetic fragment 1 using Li-acetate method, is passed through
There is restructuring with trp1 sites on Yeast genome and be incorporated on genome in TRP1 upstream and downstream homologous sequence.Adopt after conversion
SD-TRP solid panels (synthetic yeast nitrogen source YNB6.7g/L, glucose 20g/L, the kilnitamin powder 2g/ of single scarce tryptophan
L, 2% agar powder) screened, the transformant for obtaining carries out extraction Yeast genome after line point pure culture and enters performing PCR checking,
To verifying that correct recombinant bacterial strain preserves glycerol stock and is respectively designated as SyBE_Sc0014D005.
Then, adopt Li-acetate method by fragment transformed yeast bacterial strain SyBE_Sc0014D005 genetic fragment 2, pass through
There is restructuring with leu2 sites on Yeast genome and be incorporated on genome in LEU2 upstream and downstream homologous sequence.Adopt after conversion
SD-TRP-LEU solid panels (synthetic yeast nitrogen source YNB 6.7g/L, glucose 20g/L, double scarce tryptophans and leucic mixing
Powder of amino acids 2g/L, 2% agar powder) screened, the transformant for obtaining carries out extracting yeast genes after line point pure culture
Group enters performing PCR checking, to verifying that correct recombinant bacterial strain preserves glycerol stock and is named as SyBE_Sc0014D006.
Embodiment 10:Genetic fragment 1-3 construction and integration recombinant Saccharomyces cerevisiae CEN.PK2-1D
Genetic fragment 3 is passed through fragment conversion restructuring yeast strains SyBE_Sc0014D006 using Li-acetate method
There is restructuring and be inserted on genome whole before in TDH2 terminators upstream homologous sequence and ACT1 terminators downstream homologous sequence
The centre of the genetic fragment 2 of conjunction.SD-URA-TRP-LEU solid panels (synthetic yeast nitrogen source YNB 6.7g/L, Portugal are adopted after conversion
Grape sugar 20g/L, lacks the kilnitamin powder 2g/L of tryptophan, leucine and uracil, 2% agar powder) screened, obtain
Transformant carry out extracting Yeast genome after line point pure culture and enter performing PCR checking, to verifying correct recombinant bacterial strain YPD
A little bacterium solution coating 5- fluororotic acids (5-FOA) solid panel is taken after fluid nutrient medium culture, is carried after picking single bacterium colony point pure culture
Take genome enter performing PCR checking screening the correct bacterial strain of URA genes is deleted by spontaneous restructuring between DR sequences, by correct bacterial strain
It is respectively designated as SyBE_Sc0014D007.
Embodiment 11:Genetic fragment 1-4 construction and integration recombinant Saccharomyces cerevisiae CEN.PK2-1D
Genetic fragment 4 is passed through fragment conversion restructuring yeast strains SyBE_Sc0014D007 using Li-acetate method
There is restructuring with his3 sites on Yeast genome and be incorporated on genome in HIS3 upstream and downstream homologous sequence.Yeast after conversion
Using SD-TRP-LEU-HIS solid panels (synthetic yeast nitrogen source YNB 6.7g/L, glucose 20g/L, lack tryptophan, histidine and
Leucic kilnitamin powder 2g/L, 2% agar powder) screened, the transformant for obtaining carries out line point pure culture
Yeast genome is extracted afterwards and enters performing PCR checking, to verifying that correct recombinant bacterial strain preserves glycerol stock and is respectively designated as SyBE_
Sc0014D009。
Embodiment 12:The knockout of rox1 genes
△ rox1 are built first::DR-Kl URA3-DR knock out box, that is, box fragment 3 is knocked out, with plasmid pWJ1042 as mould
Plate, designs the knockout of upstream and downstream primer PCR amplified band gene upstream and downstream 40bp homology arms and DR-Kl URA3-DR nutritional labelings
Box fragment, recombinant yeast is incorporated into using the homologous recombination machinery of yeast itself by the fragment by Li-acetate method yeast conversion
On strain SyBE_Sc0014D009, SD-TRP-LEU-HIS-URA solid panels (synthetic yeast nitrogen source YNB 6.7g/ is adopted after conversion
L, glucose 20g/L, lack uracil, leucine, histidine, the kilnitamin powder 2g/L of tryptophan, 2% agar powder) enter
Row screening, the transformant for obtaining is extracted Yeast genome after point pure culture and enters performing PCR checking, to verifying correct recombinant bacterium
With a little bacterium solution coating 5- fluororotic acids (5-FOA) solid panel is taken after YPD fluid nutrient medium cultures, (DR-Kl URA3-DR seek for strain
Respectively there is the direct repeat DR of 143bp at foster label two ends, and yeast itself can occur homologous heavy using this two sections of identical sequences
Group and delete URA3 genes and one of DR;YPD culturing genes are this screening pressure of no amino acid nutrient defect, this
The saccharomycete of sample spontaneous deletion URA3 can grow.Then screened with 5-FOA, because the bacterial strain containing URA3 is in URA3
5-FOA can be made under the enzyme effect of gene code to become the virose material of paired cell, make yeast cells in the culture containing 5-FOA
Can not grow on base, so as to filter out the bacterium for deleting URA genes), extract genome after picking single bacterium colony point pure culture and enter performing PCR
Checking screening deletes the correct bacterial strain of URA3 genes by spontaneous restructuring between DR sequences, to verifying that correct recombinant bacterial strain is preserved
Glycerol stock is simultaneously respectively designated as SyBE_Sc0014D011.
Embodiment 13:Genetic fragment 1-5 construction and integration recombinant Saccharomyces cerevisiae CEN.PK2-1D
Genetic fragment 5 is passed through fragment conversion restructuring yeast strains SyBE_Sc0014D011 using Li-acetate method
There is restructuring with YPRCdelta15 sites on Yeast genome and be incorporated into base in YPRCdelta15 sites upstream and downstream homologous sequence
Because in group.Yeast adopts SD- TRP-LEU-HIS-URA solid panels (synthetic yeast nitrogen source YNB 6.7g/L, glucose after conversion
20g/L, lacks uracil, leucine, histidine, the kilnitamin powder 2g/L of tryptophan, 2% agar powder) screened, obtain
To transformant carry out extracting Yeast genome after line point pure culture and enter performing PCR checking, to verifying that correct recombinant bacterial strain is used
A little bacterium solution coating 5- fluororotic acids (5-FOA) solid panel (DR-Kl URA3-DR nutrition marks are taken after YPD fluid nutrient medium cultures
Signing two ends respectively has the direct repeat DR of 143bp, and yeast itself can be using this two sections of identical sequences generation homologous recombinations
Delete URA3 genes and one of DR;YPD culturing genes are this screening pressure of no amino acid nutrient defect, so certainly
Send out and delete the saccharomycete of URA3 and can grow.Then screened with 5-FOA, because the bacterial strain containing URA3 is in URA3 genes
5-FOA can be made under the enzyme effect of coding to become the virose material of paired cell, make yeast cells on the culture medium containing 5-FOA
Can not grow, so as to filter out the bacterium for deleting URA genes), genome is extracted after picking single bacterium colony point pure culture and enters performing PCR checking
Screening deletes the correct bacterial strain of URA3 genes by spontaneous restructuring between DR sequences, to verifying that correct recombinant bacterial strain preserves glycerine
Bacterium is simultaneously respectively designated as SyBE_Sc0014D014.
Embodiment 14:Genetic fragment 1-6 construction and integration recombinant Saccharomyces cerevisiae CEN.PK2-1D
Genetic fragment 6 is passed through fragment conversion restructuring yeast strains SyBE_Sc0014D014 using Li-acetate method
There is restructuring with YPRCdelta15 sites on Yeast genome and be incorporated into base in YNRCdelta9 sites upstream and downstream homologous sequence
Because in group.Yeast adopts SD-TRP-LEU-HIS-URA solid panels (synthetic yeast nitrogen source YNB 6.7g/L, glucose after conversion
20g/L, lacks uracil, leucine, histidine, the kilnitamin powder 2g/L of tryptophan, 2% agar powder) screened, obtain
To transformant carry out extracting Yeast genome after line point pure culture and enter performing PCR checking, to verifying that correct recombinant bacterial strain is used
A little bacterium solution coating 5- fluororotic acids (5-FOA) solid panel (DR-Kl URA3-DR nutrition marks are taken after YPD fluid nutrient medium cultures
Signing two ends respectively has the direct repeat DR of 143bp, and yeast itself can be using this two sections of identical sequences generation homologous recombinations
Delete URA3 genes and one of DR;YPD culturing genes are this screening pressure of no amino acid nutrient defect, so certainly
Send out and delete the saccharomycete of URA3 and can grow.Then screened with 5-FOA, because the bacterial strain containing URA3 is in URA3 genes
5-FOA can be made under the enzyme effect of coding to become the virose material of paired cell, make yeast cells on the culture medium containing 5-FOA
Can not grow, so as to filter out the bacterium for deleting URA genes), genome is extracted after picking single bacterium colony point pure culture and enters performing PCR checking
Screening deletes the correct bacterial strain of URA3 genes by spontaneous restructuring between DR sequences, to verifying that correct recombinant bacterial strain preserves glycerine
Bacterium is simultaneously respectively designated as SyBE_Sc0014D017.
Embodiment 15:Genetic fragment 1-7 construction and integration recombinant Saccharomyces cerevisiae CEN.PK2-1D
Genetic fragment 7 is passed through fragment conversion restructuring yeast strains SyBE_Sc0014D017 using Li-acetate method
There is restructuring with YPRCdelta15 sites on Yeast genome and be incorporated into gene in YFLWtau1 sites upstream and downstream homologous sequence
In group.Yeast adopts SD-TRP-LEU-HIS-URA solid panels (synthetic yeast nitrogen source YNB 6.7g/L, glucose 20g/ after conversion
L, lacks uracil, leucine, histidine, the kilnitamin powder 2g/L of tryptophan, 2% agar powder) screened, obtain
Transformant carries out extraction Yeast genome after line point pure culture and enters performing PCR checking, to verifying correct recombinant bacterial strain YPD liquid
A little bacterium solution coating 5- fluororotic acids (5-FOA) solid panel (DR-Kl URA3-DR nutritional labelings two ends are taken after body medium culture
Respectively there is the direct repeat DR of 143bp, yeast itself can occur homologous recombination and delete using this two sections of identical sequences
URA3 genes and one of DR;YPD culturing genes are this screening pressure of no amino acid nutrient defect, so spontaneous to delete
Except the saccharomycete of URA3 can grow.Then screened with 5-FOA, because the bacterial strain containing URA3 is in URA3 gene codes
Enzyme effect under 5-FOA can be made to become the virose material of paired cell, make the yeast cells can not on the culture medium containing 5-FOA
Growth, so as to filter out the bacterium for deleting URA genes), genome is extracted after picking single bacterium colony point pure culture and enters performing PCR checking screening
The correct bacterial strain of URA3 genes is deleted by spontaneous restructuring between DR sequences, to verifying that correct recombinant bacterial strain preserves glycerol stock simultaneously
It is respectively designated as SyBE_Sc0014D018.
Embodiment 16:The shake flask fermentation of recombinant Saccharomyces cerevisiae bacterial strain
Bacterial strain:SyBE_Sc0014D0014 (bacterial strain in existing patent CN105420134A), SyBE_Sc0014D017,
SyBE_Sc0014D018。
Test method:
Seed culture medium:20g/L glucose, 20g/L peptones, 10g/L yeast extracts, 50mg/L uracils;
Fermentation medium:20g/L glucose, 20g/L peptones, 10g/L yeast extracts, 20mg/L uracils, 10g/L
D- (+)-galactolipin.
Above-mentioned bacterial strains are inoculated in 5mL seed culture mediums, in 30 DEG C, 250rpm 14-16h is cultivated, it is dense with initial thalline
Degree OD600=0.2 transfers in fresh 25mL seed culture mediums, cultivates into logarithmic growth under the conditions of 30 DEG C, 250rpm
Phase, with initial cell concentration OD600=0.5 is inoculated in respectively in 50mL fermentation mediums, cultivates under the conditions of 30 DEG C, 250rpm,
Sampling monitoring yield of lycopene during fermentation 48h.
Lycopene quantitative approach:The zymotic fluid of two equal portions, 4000g centrifugation 2min collects thallines are taken, and is washed twice.Will
A copy of it thalline is placed in 80 DEG C and dries to constant weight, calculating dry cell weight of weighing;Another thalline is extracted to product, concrete side
Method is:With 3N HCl re-suspended cells, it is placed in boiling water bath and boils 2min, immediately after ice bath 3min;By broken cell
12000rpm, 4 DEG C of centrifugation 4min abandon supernatant, and after washing 2 times acetone, and the 5min that is vortexed are added;Acetone phase is finally collected by centrifugation, is used
Upper ultraviolet liquid phase detection after 2 μm of membrane filtrations, lycopene Detection wavelength is 471nm.As a result Fig. 3 and Fig. 4 is seen.
Result of the test:From Fig. 3 and Fig. 4, continue to raise transcription on the basis of Saccharomyces Cerevisiae in S yBE_Sc0014D014
Activity factor INO2, obtains bacterial strain SyBE_Sc0014D017, and yield of lycopene is carried from 54.62mg/gDCW (318.13mg/L)
Up to 60.97mg/gDCW (356.22mg/L).The hemoglobin gene VHb in Vitreoscilla source is introduced on this basis to add
Strong intracellular oxygen conveying, obtains bacterial strain SyBE_Sc0014D018, and its yield of lycopene is significantly improved, and reaches 66.14mg/
GDCW (376.78mg/L), this has belonged to highest in the open report that lycopene is produced currently with recombinant Saccharomyces cerevisiae.
Embodiment 17:The shake flask fermentation of recombinant Saccharomyces cerevisiae bacterial strain
Method according to embodiment of the present invention 1-15 repeats to build restructuring yeast strains, names respectively and according to embodiment 16
Method detects yield of lycopene, as a result such as following table:
The restructuring yeast strains yield of lycopene of table 1
Strain number (includes fragment 1-6) | Yield of lycopene | Strain number (includes fragment 1-7) | Yield of lycopene |
SyBE_Sc0014D027 | 60.97mg/gDCW | SyBE_Sc0014D028 | 65.03mg/gDCW |
SyBE_Sc0014D037 | 59.88mg/gDCW | SyBE_Sc0014D038 | 64.98mg/gDCW |
SyBE_Sc0014D047 | 60.04mg/gDCW | SyBE_Sc0014D048 | 64.34mg/gDCW |
The above is only the preferred embodiment of the present invention, it is noted that for the ordinary skill people of the art
For member, under the premise without departing from the principles of the invention, some improvements and modifications can also be made, these improvements and modifications also should
It is considered as protection scope of the present invention.
SEQUENCE LISTING
<110>University Of Tianjin
<120>A kind of restructuring yeast strains and its construction method and application
<130> MP1614119
<160> 2
<170> PatentIn version 3.3
<210> 1
<211> 3640
<212> DNA
<213>Artificial sequence
<400> 1
gacattagga cgccagggta gccagtatta ttcaagtcca tagaacagcc tgtatacctt 60
cacttcatta ggtatattct tggttatgcg ttatttaaat cctcatctgc cgctgcttaa 120
aaaaagcagc taaagtgttg cgtaggcact tcgaacaagt agtcagtaat atcacctttt 180
aacatctaat catcaaaaga gacatttttt gggattaatt gtttataaaa gctatgaact 240
taggtctaca gaatgtagta cggattagaa gccgccgagc gggtgacagc cctccgaagg 300
aagactctcc tccgtgcgtc ctcgtcttca ccggtcgcgt tcctgaaacg cagatgtgcc 360
tcgcgccgca ctgctccgaa caataaagat tctacaatac tagcttttat ggttatgaag 420
aggaaaaatt ggcagtaacc tggccccaca aaccttcaaa tgaacgaatc aaattaacaa 480
ccataggatg ataatgcgat tagtttttta gccttatttc tggggtaatt aatcagcgaa 540
gcgatgattt ttgatctatt aacagatata taaatgcaaa aactgcataa ccactttaac 600
taatactttc aacattttcg gtttgtatta cttcttattc aaatgtaata aaagtatcaa 660
caaaaaattg ttaatatacc tctatacttt aacgtcaagg agaaaaaacc ccgtaaacaa 720
tgtcccaagc aactgggaac gaattactgg gtatcctaga tctggataac gatatagact 780
ttgaaactgc ttaccaaatg ctcagcagta acttcgacga ccaaatgtct gcgcacatac 840
atgaaaacac gtttagtgca acttcccctc ctctgttaac acacgagctc ggcataattc 900
ctaacgtagc aaccgtgcaa ccctctcacg tagaaactat acctgccgat aaccaaactc 960
atcatgctcc tttgcatact catgcacact atctaaatca caaccctcat caaccaagca 1020
tgggttttga tcaagcgctt ggtctcaagt tgtctccttc cagttcgggg ttgttgagca 1080
cgaatgaatc gaatgccatt gaacagtttt tagacaatct aatatcacag gatatgatgt 1140
cttccaacgc ttccatgaac tccgaatcac atctacatat aagatcacca aaaaagcagc 1200
ataggtatac cgaattaaat caaagatatc ctgaaacaca tccacacagt aacacagggg 1260
agttacccac aaacacagca gatgtgccaa ctgagttcac cacgagggaa ggacctcatc 1320
agcctatcgg caatgaccac tacaacccgc caccgttttc agtacctgag atacgaatcc 1380
cagactctga tattccagcc aatatcgagg acgaccctgt gaaggtacgg aaatggaaac 1440
acgttcaaat ggagaagata cgaagaataa acaccaaaga agcctttgaa aggctcatta 1500
aatcagtaag gaccccaccg aaggaaaacg ggaaaagaat tcccaagcat attcttttaa 1560
cttgtgtaat gaacgatatc aagtccatta gaagcgcaaa tgaagcacta cagcacatac 1620
tggatgattc ctgagcgcaa tgattgaata gtcaaagatt tttttttttt aatttttttt 1680
ttttaatttt tttttttttt catagaactt tttatttaaa taaatcacgt ctatatatgt 1740
atcagtataa cgtaaaaaaa aaaacaccgt cagttaaaca aaacataaat aaaaaaaaaa 1800
agaagtgtca aatcaagtgt caaatgtgat tctgggtaga agatcggtct gcattggatg 1860
gtgtaacgca tttttttaca cacattactt gcctcgagca tcaaatggtg gttattcgtg 1920
gatctatatc acgtgatttg cttaagaatt gtcgttcatg gtgacacttt tagctttgac 1980
atgattaagt catctcaatt gatgttatct aaagtcattt caactatcta agatgtggtt 2040
gtgattgggc cattttgtga aagccagtac gccagcgtca atacactccc gtcaattagt 2100
tgcaccatgt ccacaaaatc atataccagt agagctgaga ctcatgcaag tccggttgca 2160
tcgaaacttt tacgttaatg gatgaaaaga agaccaattt gtgtgcttct cttgacgttc 2220
gttcgactga tgagctattg aaacttgttg aaacgttggg tccatacatt tgccttttga 2280
aaacacacgt tgatatcttg gagatttcag ttatgagggt actgtcgttc cattgaaagc 2340
attggcagag aaatacaagt tcttgatatt tgaggacaga aaattcgccg atatcggtaa 2400
cacagtcaaa ttacaatata catcgggcgt taccgtatcg cagaatggtc tgatatcacc 2460
aacgcccacg gggttactgg tgctggtatt gttgctggct tgaaacaagg tgcgcaagag 2520
gtcaccaaag aaccaagggg attattgatg cttgctaatt gtcttccaag ggttctctag 2580
cacacggtga atatactaag ggtaccgttg atattgcaaa gagtgataaa gatttcgtta 2640
ttgggttcat tgctcagaac gatatgggag gaagagaaga aggtttgatt ggctaatcat 2700
gaccccaggt gtaggtttag acgacaaagg cgatgcattg ggtcagcagt acagaaccgt 2760
cgacgaagtt gtaagtggtg gatcagatat catcattgtt ggcagaggac tttcgccaag 2820
ggtagagatc ctaaggttga aggtgaaaga tacagaaatg ctggatggga agcgtaccaa 2880
aagagaatca gcgctcccca ttaattatac aggaaactta atagaacaaa tcacatatta 2940
atctaatagc cacctgcatt ggcacggtgc aacactactt caacttcatc ttacaaaaag 3000
atcacgtgat ctgttgtatt gaactgaaaa ttttttgttt gcttctctct ctctctcttt 3060
catttgtgag atttaaaaac cagaaactac atcatcgaat tccagctgac caccatgagc 3120
cgaattccag cacactggcg gccgttacta gtggatccga gctcggtacc aagctgggct 3180
gcaggaattc gtatcaagct tatcgatgtg attctgggta gaagatcggt ctgcattgga 3240
tggtggtaac gcattttttt acacacatta cttgcctcga gcatcaaatg gtggttattc 3300
gtggatctat atcacgtgtt tgcttaagaa ttgtcgttca tggtgacacg ggcccggtac 3360
ccaattcgcc ctaacaagta gtatgagtac acaccaatag atgattaatt ttttccgaca 3420
atcaaatatt gggatcataa acacacataa tcgccatatc cgttaattcg ggtttcaatc 3480
acttcgtttg tctatcgtat cgcagcctag tgaatattta attctttcaa taaaaaaggc 3540
ttaaaatcac catgaaaatc acaagaggaa tctttcaaca agaacaatag tatacaatcc 3600
atgaatgaag gagttcatat ttgactagaa ctatacaaag 3640
<210> 2
<211> 3559
<212> DNA
<213>Artificial sequence
<400> 2
aaagacgtat agtccaaagc aatattcaag gaaactacaa agtgagatta gctacgtaga 60
aataggagaa aaagtataaa tttaaagtta aattcagatc tcaaattctc ttaatatttg 120
aaataaatcc gctgcgtgac aaatcccgtg atgatctcgg aatatttata tgttaccatt 180
tatacttatg gtagaattat actcactaat gaatgtacgg ttactatttg gaacaagtgg 240
tcatcaattg ccatagtaac attttgaatg cttgcatcgt gcatgaatac ataccgctat 300
tttagattcc tgacttcaac tcaagacgca cagatattat aacatctgca taataggcat 360
ttgcaagaat tactcgtgag taaggaaaga gtgaggaact atcgcatacc tgcatttaaa 420
gatgccgatt tgggcgcgaa tcctttattt tggcttcacc ctcatactat tatcagggcc 480
agaaaaagga agtgtttccc tccttcttga attgatgtta ccctcataaa gcacgtggcc 540
tcttatcgag aaagaaatta ccgtcgctcg tgatttgttt gcaaaaagaa caaaactgaa 600
aaaacccaga cacgctcgac ttcctgtctt cctattgatt gcagcttcca atttcgtcac 660
acaacaaggt cctagcgacg gctcacaggt tttgtaacaa gcaatcgaag gttctggaat 720
ggcgggaaag ggtttagtac cacatgctat gatgcccact gtgatctcca gagcaaagtt 780
cgttcgatcg tactgttact ctctctcttt caaacagaat tgtccgaatc gtgtgacaac 840
aacagcctgt tctcacacac tcttttcttc taaccaaggg ggtggtttag tttagtagaa 900
cctcgtgaaa cttacattta catatatata aacttgcata aattggtcaa tgcaagaaat 960
acatatttgg tcttttctaa ttcgtagttt ttcaagttct tagatgcttt ctttttctct 1020
tttttacaga tcatcaagga agtaattatc tactttttac aacaaatata aaacaatgtt 1080
ggaccaacaa accataaata tcataaaagc cacagtacca gtcttgaagg aacacggtgt 1140
aactatcact accacattct ataagaattt gttcgctaag catccagaag ttagaccatt 1200
gtttgatatg ggtagacaag aatctttaga acaaccaaaa gcattggcaa tgactgtttt 1260
ggctgcagct caaaacatcg aaaatttgcc agctatctta ccagcagtta agaaaattgc 1320
tgttaagcat tgtcaagcag gtgttgcagc tgcacattat ccaattgttg gtcaagaatt 1380
gttgggtgct attaaagaag ttttgggtga cgctgcaaca gatgatattt tagatgcttg 1440
gggtaaagca tacggtgtaa tagccgatgt ctttatccaa gttgaagccg atttgtatgc 1500
ccaagccgtt gaatgatctc tgcttttgtg cgcgtatgtt tatgtatgta cctctctctc 1560
tatttctatt tttaaaccac cctctcaata aaataaaaat aataaagtat ttttaaggaa 1620
aagacgtgtt taagcactga ctttatctac tttttgtacg ttttcattga tataatgtgt 1680
tttgtctctc ccttttctac gaaaatttca aaaattgacc aaaaaaagga atatatatac 1740
gaaaaactat tatatttata tatcatagtg ttgataaaaa atgtttatcc attggaccgt 1800
gtagtgattc tgggtagaag atcggtctgc attggatggt gtaacgcatt tttttacaca 1860
cattacttgc ctcgagcatc aaatggtggt tattcgtgga tctatatcac gtgatttgct 1920
taagaattgt cgttcatggt gacactttta gctttgacat gattaagtca tctcaattga 1980
tgttatctaa agtcatttca actatctaag atgtggttgt gattgggcca ttttgtgaaa 2040
gccagtacgc cagcgtcaat acactcccgt caattagttg caccatgtcc acaaaatcat 2100
ataccagtag agctgagact catgcaagtc cggttgcatc gaaactttta cgttaatgga 2160
tgaaaagaag accaatttgt gtgcttctct tgacgttcgt tcgactgatg agctattgaa 2220
acttgttgaa acgttgggtc catacatttg ccttttgaaa acacacgttg atatcttgga 2280
gatttcagtt atgagggtac tgtcgttcca ttgaaagcat tggcagagaa atacaagttc 2340
ttgatatttg aggacagaaa attcgccgat atcggtaaca cagtcaaatt acaatataca 2400
tcgggcgtta ccgtatcgca gaatggtctg atatcaccaa cgcccacggg gttactggtg 2460
ctggtattgt tgctggcttg aaacaaggtg cgcaagaggt caccaaagaa ccaaggggat 2520
tattgatgct tgctaattgt cttccaaggg ttctctagca cacggtgaat atactaaggg 2580
taccgttgat attgcaaaga gtgataaaga tttcgttatt gggttcattg ctcagaacga 2640
tatgggagga agagaagaag gtttgattgg ctaatcatga ccccaggtgt aggtttagac 2700
gacaaaggcg atgcattggg tcagcagtac agaaccgtcg acgaagttgt aagtggtgga 2760
tcagatatca tcattgttgg cagaggactt tcgccaaggg tagagatcct aaggttgaag 2820
gtgaaagata cagaaatgct ggatgggaag cgtaccaaaa gagaatcagc gctccccatt 2880
aattatacag gaaacttaat agaacaaatc acatattaat ctaatagcca cctgcattgg 2940
cacggtgcaa cactacttca acttcatctt acaaaaagat cacgtgatct gttgtattga 3000
actgaaaatt ttttgtttgc ttctctctct ctctctttca tttgtgagat ttaaaaacca 3060
gaaactacat catcgaattc cagctgacca ccatgagccg aattccagca cactggcggc 3120
cgttactagt ggatccgagc tcggtaccaa gctgggctgc aggaattcgt atcaagctta 3180
tcgatgtgat tctgggtaga agatcggtct gcattggatg gtggtaacgc atttttttac 3240
acacattact tgcctcgagc atcaaatggt ggttattcgt ggatctatat cacgtgtttg 3300
cttaagaatt gtcgttcatg gtgacacggg cccggtaccc aattcgccct atcagcgtgt 3360
gttttatact tctcttatat agtataagaa gatccatatt taatcttcat taacactact 3420
tcttaacctc taattaccaa cgggtcaatg ttaggataat tgttggcatt ccattgttat 3480
taaagggaat caaagtatat taaaaattct tcccaaggat gtaataacct aaaaaaggaa 3540
gcccatattt ctatataat 3559
Claims (20)
1. a kind of restructuring yeast strains, it is characterised in that the Yeast genome knock out gal1, gal7, gal10, ypl062w,
Rox1 genes, and comprising the following genetic fragment on Jing yeast autologous recombination and integrations to its genome:
Yeast trp1 site upstream homologous sequences, CYC1 terminators, Bt crtI, GAL10 promoters, GAL1 promoters, Pa
The genetic fragment 1 that crtB, PGK1 terminator, yeast trp1 sites downstream homologous sequences are sequentially spliced;
Yeast leu2 site upstream homologous sequences, LEU2 marks, TDH2 terminators, ACT1 terminators, the HMG-CoA reduction of truncation
Enzyme gene tHMGR1, GAL10 promoter, GAL1 promoters, Tm crtE, GPM1 terminators, the homologous sequence of yeast leu2 sites downstreams
The genetic fragment 2 that row are sequentially spliced;
TDH2 terminators and its upstream homologous sequence, DR-KlURA3-DR nutritional labelings, CYC1 terminators, Bt in genetic fragment 2
ACT1 terminators and genetic fragment 3 that downstream homologous sequence is sequentially spliced in crtI, GAL7 promoter, genetic fragment 2;
Yeast his3 site upstream homologous sequences, HIS3 marks, ENO2 terminators, ACT1 terminators, the HMG-CoA reduction of truncation
Enzyme gene tHMGR1, GAL10 promoter, GAL1 promoters, fusion BTS1-ERG20, FBA1 terminator, yeast his3 positions
The genetic fragment 4 that point downstream homologous sequence is sequentially spliced;
Yeast YPRCdelta15 site upstream homologous sequences, DR-Kl URA3-DR nutritional labelings, CPS1 terminators, transcription factor
The genetic fragment 5 that INO2, GAL1 promoter, saccharomyces cerevisiae YPRCdelta15 sites downstream homologous sequences are sequentially spliced;
Yeast YNRCdelta9 site upstream homologous sequences, GAL1 promoters, transcription factor INO2, CPS1 terminator, DR-Kl
The genetic fragment 6 that URA3-DR nutritional labelings, yeast YNRCdelta9 sites downstream homologous sequences are sequentially spliced;
Wherein, gal1, gal7, gal10, ypl062w, rox1 gene and homologous recombination genetic fragment 1- are knocked out in Yeast genome
After 5, intermediate strains, restructuring yeast strains Jing autologous recombination and integration genetic fragment 6 on the basis of intermediate strains are obtained
After obtain.
2. bacterial strain according to claim 1, it is characterised in that the genetic fragment 6 such as SEQ ID NO:Shown in 1.
3. bacterial strain according to claim 1, it is characterised in that the intermediate strains are deposit number CGMCC No.11748's
Bacterial strain.
4. bacterial strain according to claim 1, it is characterised in that the yeast is that saccharomyces cerevisiae, solution fat belong to yeast or Crewe dimension
Category yeast.
5. bacterial strain according to claim 4, it is characterised in that the saccharomyces cerevisiae is CEN.PK series saccharomyces cerevisiaes or BY systems
Row saccharomyces cerevisiae.
6. bacterial strain according to claim 5, it is characterised in that the CEN.PK series saccharomyces cerevisiae is saccharomyces cerevisiae
CEN.PK2-1D。
7. the bacterial strain according to claim 1-6 any one, it is characterised in that also including Jing yeast autologous recombination and integrations
Following genetic fragment on its genome:
Yeast YFLWtau1 site upstream homologous sequences, PGK1 promoters, gene VHb, ACT1 from Vitreoscilla terminate
The gene piece that son, DR-KlURA3-DR nutritional labelings, saccharomyces cerevisiae YFLWtau1 sites downstream homologous sequences are sequentially spliced
Section 7.
8. bacterial strain according to claim 7, it is characterised in that the genetic fragment 7 such as SEQ ID NO:Shown in 2.
9. bacterial strain according to claim 8, it is characterised in that the bacterial strain is deposit number for the bacterium of CGMCC No.13013
Strain.
10. the bacterial strain according to claim 1-9 any one, it is characterised in that also including recognition sequence, the recognition sequence two
Hold as tag sequences, the nucleotides of one or more amino acid in middle C, M, E, P, S, A, H, V, N, W, T, Y, G, I, D for coding
Sequence, overall size is 180-220bp.
Bacterial strain described in 11. claim 1-10 any one production lycopene in application and production with lycopene
For the application in the product of intermediate product.
The construction method of restructuring yeast strains described in 12. claims 1, it is characterised in that include:
Step 1, structure are same by yeast gal7 downstream of gene homologous sequences, DR-Kl URA3-DR nutritional labelings, gal1 downstream of gene
Knockout box fragment 1 that source sequence is sequentially connected with, by ypl062w upstream region of gene homologous sequences, kanMX resistance labels, ypl062w bases
Because of the knockout box fragment 2 that downstream homologous sequence is sequentially connected with, and build by yeast rox1 upstream region of gene homologous sequences, DR-Kl
The knockout box fragment 3 that URA3-DR nutritional labelings, rox1 downstream of gene homologous sequences are sequentially connected with, is led to using box fragment 1-3 is knocked out
Cross the restructuring of yeast autologous and knock out yeast gal1, gal7, gal10, ypl062w and rox1 gene, obtain gene knockout yeast,
It is standby;
By yeast trp1 site upstream homologous sequences, CYC1 terminators, Bt crtI, GAL10 promoters, GAL1 promoters, Pa
CrtB, PGK1 terminator, yeast trp1 sites downstream homologous sequences sequentially splice, and obtain genetic fragment 1, i.e. trp1 site upstreams
Homologous sequence-TCYC1-crtI-PGAL10-PGAL1-crtB-TPGK1- trp1 sites downstream homologous sequences, it is standby;
By yeast leu2 site upstream homologous sequences, LEU2 marks, TDH2 terminators, ACT1 terminators, truncate HMG-CoA also
Nitroreductase gene tHMGR1, GAL10 promoter, GAL1 promoters, Tm crtE, GPM1 terminators, yeast leu2 sites downstreams are homologous
Sequence is sequentially spliced, and obtains genetic fragment 2, i.e. leu2 site upstreams homologous sequence-LEU2-TTDH2-TACT1-tHMGR1-PGAL10-
PGAL1-crtE-TGPM1- leu2 sites downstream homologous sequences, it is standby;
By TDH2 terminators in genetic fragment 2 and its upstream homologous sequence, DR-Kl URA3-DR nutritional labelings, CYC1 terminators,
ACT1 terminators and downstream homologous sequence sequentially splices in Bt crtI, GAL7 promoters, genetic fragment 2, obtain genetic fragment
3, i.e. TDH2 terminators and its upstream homologous sequence-DR-Kl URA3-DR-TCYC1-Bt crtI-PGAL7-TACT1- ACT1 terminators
And homologous sequence downstream, it is standby;
Yeast entogenous FPP synthase gene ERG20 and GGPP synthase gene BTS1 is attached, fusion BTS1- is obtained
ERG20, then by yeast his3 site upstream homologous sequences, HIS3 marks, ENO2 terminators, ACT1 terminators, truncate
HMG-CoA reductase gene tHMGR1, GAL10 promoter, GAL1 promoters, fusion BTS1-ERG20, FBA1 terminator,
Yeast his3 sites downstream homologous sequences sequentially splice, and obtain genetic fragment 4, i.e. his3 site upstreams homologous sequence-HIS3-
TENO2-TACT1-tHMGR1-PGAL10-PGAL1-(BTS1-ERG20)-TFBA1- his3 sites downstream homologous sequences, it is standby;
By yeast YPRCdelta15 site upstream homologous sequences, DR-Kl URA3-DR nutritional labelings, CPS1 terminators, transcription because
Sub- INO2, GAL1 promoter, saccharomyces cerevisiae YPRCdelta15 sites downstream homologous sequences sequentially splice, and obtain genetic fragment 5,
That is YPRCdelta15 site upstreams homologous sequence-DR-Kl URA3-DR-TCPS1-INO2-PGAL1- YPRCdelta15 sites downstreams
Homologous sequence, it is standby;
By yeast YNRCdelta9 site upstream homologous sequences, GAL1 promoters, transcription factor INO2, CPS1 terminator, DR-Kl
URA3-DR nutritional labelings, yeast YNRCdelta9 sites downstream homologous sequences sequentially splice, and obtain genetic fragment 6, i.e.,
YNRCdelta9 site upstream homologous sequence-PGAL1-INO2-TCPS1- DR-Kl URA3-DR-YNRCdelta9 sites downstreams are homologous
Sequence, it is standby;
Step 2, genetic fragment 1 is proceeded in the gene knockout yeast by Li-acetate method, by trp1 positions in genetic fragment 1
There is restructuring with trp1 sites on gene knockout Yeast genome and be incorporated on genome in point upstream and downstream homologous sequence;
Genetic fragment 2 is proceeded in the gene knockout yeast by Li-acetate method, by leu2 sites in genetic fragment 2,
There is restructuring with leu2 sites on gene knockout Yeast genome and be incorporated on genome in downstream homologous sequence;
Genetic fragment 3 is continued through into Li-acetate method to be transformed in the gene knockout yeast of transgene fragment 2, by gene
TDH2 terminators and its upstream homologous sequence in fragment 3, ACT1 terminators and homologous sequence downstream, with the gene piece integrated
There is restructuring and be inserted into the gene knockout ferment of integrator gene fragment 2 in the TDH2 terminators and ACT1 terminators site in section 2
On female genome;
Genetic fragment 4 is proceeded in the gene knockout yeast by Li-acetate method, by his3 sites in genetic fragment 4,
There is restructuring with his3 sites on gene knockout Yeast genome and be incorporated on genome in downstream homologous sequence;
Genetic fragment 5 is transformed in gene knockout yeast by Li-acetate method, by YPRCdelta15 positions in genetic fragment 5
There is restructuring with YPRCdelta15 sites on gene knockout Yeast genome and be incorporated into genome in point upstream and downstream homologous sequence
On;
Intermediate strains are obtained after genetic fragment 1-5 is transformed in gene knockout yeast by Li-acetate method;
Genetic fragment 6 is transformed in intermediate strains by Li-acetate method, by YNRCdelta9 sites in genetic fragment 6,
There is restructuring and be incorporated on genome in downstream homologous sequence, recombinated with YNRCdelta9 sites on intermediate strains genome
Yeast strain.
13. according to claim 12 construction method, it is characterised in that also include:Genetic fragment 7 is built, and by gene piece
Section 7 proceeds to acquisition restructuring yeast strains;
Specifically, by yeast YFLWtau1 site upstream homologous sequences, PGK1 promoters, the gene VHb from Vitreoscilla,
ACT1 terminators, DR-Kl URA3-DR nutritional labelings, saccharomyces cerevisiae YFLWtau1 sites downstream homologous sequences sequentially splice, and obtain
Obtain genetic fragment 7, i.e. YFLWtau1 site upstreams homologous sequence-PPGK1-VHb-TACT1- DR-Kl URA3-DR-YFLWtau1 positions
Point downstream homologous sequence;
Genetic fragment 7 is transformed into into transgene fragment 1-6 or the clpp gene of transgene fragment 1-5 by Li-acetate method
In except yeast, by YFLWtau1 sites upstream and downstream homologous sequence in genetic fragment 7 and gene knockout Yeast genome
There is restructuring and be incorporated on genome in YFLWtau1 sites.
14. according to claim 13 construction method, it is characterised in that the concrete construction method of the genetic fragment 7 is as follows:
Amplification yeast YFLWtau1 site upstream 297bp homologous sequences, PGK1 promoters, the gene VHb from Vitreoscilla,
ACT1 terminators, DR-Kl URA3-DR nutritional labelings, saccharomyces cerevisiae YFLWtau1 sites downstream 208bp homologous sequences, sequentially lead to
Cross OE-PCR methods to be stitched together, obtain genetic fragment 7 of the two ends comprising PmeI restriction enzyme sites, by fragment obtained above with it is flat
Ends vector pJET1.2 connects, and obtains the integrated plasmid of genetic fragment 7 and is designated as pYFLWtau1-PPGK1-VHb-TACT1-DR-Kl
URA3-DR, PmeI digestion obtains genetic fragment 7, i.e. YFLWtau1 site upstreams homologous sequence-PPGK1-VHb-TACT1-DR-
KlURA3-DR-YFLWtau1 sites downstream homologous sequences, nucleotide sequence such as SEQ ID NO:Shown in 2.
15. according to claim 12 construction method, it is characterised in that the concrete construction method of the genetic fragment 6 is as follows:
Amplification yeast YNRCdelta9 site upstream 256bp homologous sequences, GAL1 promoters, transcription factor INO2, CPS1 terminate
Son, DR-Kl URA3-DR nutritional labelings, yeast YNRCdelta9 sites downstream 267bp homologous sequences, sequentially pass through OE-PCR side
Method is stitched together, and genetic fragment 6 of the two ends comprising PmeI restriction enzyme sites is obtained, by fragment obtained above and flat ends vector
PJET1.2 connects, and obtains the integrated plasmid of genetic fragment 6 and is designated as pYNRCdelta9-PGAL1-INO2-TCPS1- DR-Kl URA3-DR,
PmeI digestions obtain genetic fragment 6, i.e. YNRCdelta9 site upstreams homologous sequence-PGAL1-INO2-TCPS1-DR-Kl URA3-
DR-YNRCdelta9 sites downstream homologous sequences, nucleotide sequence such as SEQ ID NO:Shown in 1.
A kind of 16. methods for producing lycopene, it is characterised in that by bacterial strain Jing seeds described in claim 1-8 any one
Fermented and cultured in fermentation medium is inoculated in after medium culture activation, collects thalline cell extraction tomato red after fermented and cultured
Element.
17. according to claim 16 methods described, it is characterised in that by inoculation described in claim 1-8 any one in
After cultivating in 5mL seed culture mediums, with initial cell concentration OD600=0.2 transfers in fresh 25mL seed culture mediums culture extremely
Mid log phase, with initial cell concentration OD600=0.5 is inoculated in culture in 50mL fermentation mediums, collects after fermented and cultured
Somatic cells extract lycopene.
18. according to the methods described of claim 16 or 17, it is characterised in that the seed culture medium is 20g/L glucose, 20g/
L peptones, 10g/L yeast extracts, 50mg/L uracils, remaining is water.
19. according to the methods described of claim 16 or 17, it is characterised in that the fermentation medium is 20g/L glucose, 20g/
L peptones, 10g/L yeast extracts, 20mg/L uracils, 10g/L D- (+)-galactolipin, remaining is water.
20. according to the methods described of claim 16 or 17, it is characterised in that the culture is to train under the conditions of 30 DEG C, 250rpm
Support.
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