CN106399500A - Molecular identification method of Protosalanx hyalocranius and neosalanx taihuensis - Google Patents

Molecular identification method of Protosalanx hyalocranius and neosalanx taihuensis Download PDF

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CN106399500A
CN106399500A CN201610829411.0A CN201610829411A CN106399500A CN 106399500 A CN106399500 A CN 106399500A CN 201610829411 A CN201610829411 A CN 201610829411A CN 106399500 A CN106399500 A CN 106399500A
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neosalanx taihuensis
seq
molecular genetic
neosalanx
taihuensis
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CN106399500B (en
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李大命
张彤晴
潘建林
唐晟凯
刘燕山
钟立强
刘小维
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Freshwater Fisheries Research Institute of Jiangsu Province
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    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
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Abstract

The invention discloses a molecular identification method of Protosalanx hyalocranius and neosalanx taihuensis. The method for molecular genetic identification of Protosalanx hyalocranius and neosalanx taihuensis comprises (1) respectively extracting the genome DNAs of Protosalanx hyalocranius and neosalanx taihuensis to be identified, (2) carrying out PCR amplification on Cytb genes of Protosalanx hyalocranius and neosalanx taihuensis through the extracted genome DNAs as templates, and (3) purifying the amplified product and carrying out direct sequencing, wherein the Protosalanx hyalocranius has a basic group T at the 45th site of the Ctyb gene and the neosalanx taihuensis has a basic group C at the 45th site of the Ctyb gene. The method can quickly, easily, accurately and effectively identify Protosalanx hyalocranius and neosalanx taihuensis. The results are stable and a repetition rate is high. The method fills the gaps of the current domestic molecular biological standard identification of Protosalanx hyalocranius and neosalanx taihuensis.

Description

A kind of Big Salangid and the molecular identification method of neosalanx taihuensis
Technical field
The invention belongs to genetic arts, it is related to the molecular identification method of a kind of Big Salangid and neosalanx taihuensis.
Background technology
China is the area of origin of world Hemisalanx and main areal area, extensively divides in each big water system in Eastern China and lake Cloth.Hemisalanx nutritive value and economic worth are all very high, are important economic fishs, in creating huge economic benefit.Hemisalanx Biocycle is short, discrete of generation, reproductivity and to settle down ability strong.As typical r- Kstrategist, Hemisalanx is sensitive to environmental change And be swift in response, Population Dynamic is fast.But the Hemisalanx natural resources of China but because reclaiming land from a lake, overfishing, environmental pollution and The impact of the many factors such as Habitat Fragmentation and continuous downturn, the natural resources of various Hemisalanxes all decline to some extent, species Distribution is reduced significantly, and indivedual species are gradually endangered, and carries out Icefish Resource investigation and protection work is extremely urgent.Big Salangid and Taihu Lake New Hemisalanx is two kinds of common Hemisalanx species, both body colours and plesiomorphism, is difficult to distinguish and differentiates.
Content of the invention
The purpose of the present invention is the difficulty for differentiating forms, provides the molecular genetic of a kind of Big Salangid and neosalanx taihuensis Discrimination method.
The purpose of the present invention is achieved through the following technical solutions:
A kind of Big Salangid and the molecular genetic identification method of neosalanx taihuensis, comprise the steps of:
(1) Big Salangid to be identified and neosalanx taihuensis genomic DNA are extracted respectively;
(2) with the genomic DNA of extraction as template, PCR expands the cytochrome b gene of Big Salangid and neosalanx taihuensis (Ctyb);
(3) amplified production after purification, direct Sequencing, Cytb gene the 45th site base be T for Big Salangid, if this site It is C for neosalanx taihuensis.
The forward primer of the described cytochrome b gene expanding Big Salangid and neosalanx taihuensis for PCR is L14321: SEQ ID NO.1, downstream primer is H15634:SEQ ID NO.2.
Described PCR reaction system is 50 μ L:The template DNA 1 μ L of 100ng/ μ L, PCR buffer 5 μ L, dNTP mixed liquor 4 μ L, each 1 μ L of upstream and downstream primer of every kind of dNTP 0.1mmol/L, 10 μm of ol/L, the Taq enzyme of 2 μ L 2.5IU;Distilled water 36 μ L;Described PCR buffer is by 10mmol/L Tris-HCl, pH9.0,0.5mmol/L KCl, 30mmol/L MgCl2, 0.01% (g/100ml) gelatin forms;Pcr amplification reaction program is:94 DEG C of denaturations 4min, 94 DEG C of degeneration 40s, 55 DEG C of annealing 40s, 72 DEG C extension 90s, through 35 circulation after again 72 DEG C extension 10min.
The primer pair that a kind of molecular genetic for Big Salangid and neosalanx taihuensis differentiates, forward primer is L14321:SEQ ID NO.1, downstream primer is H15634:SEQ ID NO.2.
Primer pair of the present invention differentiates the application in Big Salangid and neosalanx taihuensis in molecular genetic.
Application in preparing Big Salangid and neosalanx taihuensis molecular genetic identification reagent for the primer pair of the present invention.
A kind of Big Salangid and neosalanx taihuensis molecular genetic identification reagent, comprise primer pair of the present invention.
Described Big Salangid and neosalanx taihuensis molecular genetic identification reagent, further preferably include PCR buffer and dNTP mixes Close liquid, described PCR buffer is by 10mmol/L Tris-HCl, pH9.0,0.5mmol/L KCl, 30mmol/L MgCl2, 0.01% gelatin composition.
Beneficial effect:
The present invention is directed to Big Salangid and neosalanx taihuensis cytochrome b (Cytochrome b, Cytb) gene order difference, First using the cytochrome b gene full length sequence of Big Salangid and neosalanx taihuensis as foundation, thus qualitative identification Big Salangid and Neosalanx taihuensis.The method can quickly, easy, accurately and efficiently differentiate Big Salangid and neosalanx taihuensis, result stability Good, repetitive rate is high, has filled up the blank that current domestic standard molecular biological differentiates Big Salangid and neosalanx taihuensis, has been also beneficial to Icefish Resource is protected.
Brief description
Fig. 1 is Cytb gene sequencing sequence alignment result in the present invention, and what asterisk was indicated is from the 45th site (Cytb-45) The base sequence difference starting.
Specific embodiment
To be further elucidated with the present invention with reference to embodiments, but to be not that the present invention is limited in any form, only Only illustrate.
Embodiment 1
1st, design of primers
Design a pair of specific PCR amplimer, primer sequence is:L14321:5'-CCAGTGA- CTTGAAAAACCACCG-3'(SEQ ID NO.1), downstream primer is H15634:5'-CTTAGCTTTGGGAGT-TAAGGGT- 3'(SEQ ID NO.2).
2nd, sample collection
Take Big Salangid to be identified and individual each 30 tails of neosalanx taihuensis.
3rd, extracting genome DNA
The tail fin taking every tail fish organizes about 30mg, blots surface moisture with filter paper, loads 1.5ml centrifuge tube, adds 420 μ L STE buffer (30mmol/L Tris-HCl, pH8.0,200mmol/L EDTA, 50mmol/L NaCl).Add after mixing Concentration is the E.C. 3.4.21.64 10 μ L of 10% SDS 80 μ L and 20mg/mL, 56 DEG C of digestion 8-10h;Add equal-volume phenol:Chloroform: Isoamyl alcohol (volume ratio 25:24:1) twice, 12000r is centrifuged 10min, takes supernatant for extracting;Add equal-volume chloroform:Isoamyl alcohol (volume ratio 24:1) once, 12000r is centrifuged 10min, takes supernatant for extracting;Add equal-volume pre-cooling dehydrated alcohol, 12000r from Heart 10min, abandons clear liquid;Add the washing with alcohol precipitation of 600mL 70%, 8000r is centrifuged 10min, outwells ethanol, is dried;Add 200 μ L distilled water dissolvings, ultraviolet spectrophotometer is surveyed its OD value and is diluted to 100ng/ μ L, and -20 DEG C save backup.
4th, PCR amplification and detection
The DNA of extraction is template, enters performing PCR amplification with above-mentioned primer (L14321 and H15634).PCR reaction system is 50μL:1 μ L template DNA (100ng/ μ L);PCR buffer 5 μ L (10mmol/L Tris-HCl, pH9.0,0.5mmol/LKCl, 30mmol/L MgCl2, 0.01% gelatin);DNTP mixed liquor 4 μ L (every kind of dNTP 0.1mmol/L);Upstream and downstream primer (10 μ Mol/L) each 1 μ L, 2 μ L Taq enzyme (2.5IU);Distilled water 36 μ L.Amplified reaction program is:94 DEG C of denaturations 4min, 94 DEG C of changes Property 40s, 55 DEG C annealing 40s, 72 DEG C extension 90s, through 35 circulation after again 72 DEG C extension 10min.
PCR primer detects in 1% agarose gel electrophoresiies and separates, and after electrophoresis 30min under 120V voltage, becomes through gel As analysis system determines size and the purity of pcr amplification product.
5th, sequencing compares
Pcr amplification product after detection is fed directly to biotech firm's purification sequencing, obtains 1141bp sequence, permissible after comparison Find that the base sequence from the 45th site (Cytb-45) for the Cytb gene has differences:30 tail Big Salangid the 45th site (Cytb-45) Base is T, and 30 tail neosalanx taihuensis the 45th site (Cytb-45) is C.
Embodiment 2
According to embodiment 1 method, by sample enlargement to Big Salangid and individual each 80 tails of neosalanx taihuensis, result still shows Big Salangid cytochrome b gene the 45th site (Cytb-45) base is T, and neosalanx taihuensis the 45th site (Cytb-45) base is C.

Claims (8)

1. a kind of Big Salangid and the molecular genetic identification method of neosalanx taihuensis are it is characterised in that comprise the steps of:
(1) Big Salangid to be identified and neosalanx taihuensis genomic DNA are extracted respectively;
(2) with the genomic DNA of extraction as template, PCR expands the cytochrome b gene Ctyb of Big Salangid and neosalanx taihuensis;
(3) amplified production after purification, direct Sequencing, Cytb gene the 45th site base be T for Big Salangid, if this site is C For neosalanx taihuensis.
2. molecular genetic identification method according to claim 1 it is characterised in that for PCR amplification Big Salangid new with Taihu Lake The forward primer of the cytochrome b gene of Hemisalanx is L14321:SEQ ID NO.1, downstream primer is H15634:SEQ ID NO.2.
3. molecular genetic identification method according to claim 1 is it is characterised in that PCR reaction system is 50 μ L:100ng/μ The template DNA 1 μ L of L, PCR buffer 5 μ L, dNTP mixed liquor 4 μ L, every kind of dNTP 0.1mmol/L, 10 μm of ol/L's is upper and lower The trip each 1 μ L of primer, the Taq enzyme of 2 μ L 2.5IU;Distilled water 36 μ L;Described PCR buffer by 10mmol/L Tris-HCl, PH9.0,0.5mmol/L KCl, 30mmol/L MgCl2, 0.01% (w/v) gelatin composition.
4. molecular genetic identification method according to claim 1 is it is characterised in that pcr amplification reaction program is:94 DEG C pre- Degeneration 4min, 94 DEG C of degeneration 40s, 55 DEG C annealing 40s, 72 DEG C extension 90s, through 35 circulation after again 72 DEG C extension 10min.
5. a kind of primer pair differentiates the application in Big Salangid and neosalanx taihuensis in molecular genetic, and described primer pair is drawn by upstream Thing is L14321:SEQ ID NO.1, downstream primer is H15634:SEQ ID NO.2 forms.
6. application in preparing Big Salangid and neosalanx taihuensis molecular genetic identification reagent for a kind of primer pair, described primer pair It is L14321 by forward primer:SEQ ID NO.1, downstream primer is H15634:SEQ ID NO.2 forms.
7. a kind of Big Salangid and neosalanx taihuensis molecular genetic identification reagent are it is characterised in that comprise forward primer L14321:SEQ ID NO.1 and downstream primer H15634:The primer pair of SEQ ID NO.2 composition.
8. Big Salangid according to claim 7 and neosalanx taihuensis molecular genetic identification reagent are it is characterised in that described Big Salangid and neosalanx taihuensis molecular genetic identification reagent, further preferably include PCR buffer and dNTP mixed liquor, described PCR Buffer is by 10mmol/L Tris-HCl, pH9.0,0.5mmol/L KCl, 30mmol/L MgCl2, 0.01% gelatin composition.
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Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107858437A (en) * 2017-09-27 2018-03-30 浙江海洋大学 A kind of molecular biology method of quick discriminating silver color schizothoracin and Yi Li schizothoracins
CN110699460A (en) * 2019-09-23 2020-01-17 江苏省淡水水产研究所 Cytb gene sequence based molecular identification method for identifying beta and beta
CN113913534A (en) * 2021-11-19 2022-01-11 中国水产科学研究院黑龙江水产研究所 Primer for identifying big whitebait and Taihu new whitebait and identification method thereof

Citations (1)

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CN104152451A (en) * 2014-08-19 2014-11-19 淮南师范学院 Primer and method for molecular identification of new whitebait species in Taihu Lake

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CN104152451A (en) * 2014-08-19 2014-11-19 淮南师范学院 Primer and method for molecular identification of new whitebait species in Taihu Lake

Non-Patent Citations (2)

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JIE ZHANG等: "molecular phylogeny of icefish salangidae based on complete mtDNA cytochrome b sequences, with comments on estuarine fish evolution", 《BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY》 *
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Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107858437A (en) * 2017-09-27 2018-03-30 浙江海洋大学 A kind of molecular biology method of quick discriminating silver color schizothoracin and Yi Li schizothoracins
CN110699460A (en) * 2019-09-23 2020-01-17 江苏省淡水水产研究所 Cytb gene sequence based molecular identification method for identifying beta and beta
CN113913534A (en) * 2021-11-19 2022-01-11 中国水产科学研究院黑龙江水产研究所 Primer for identifying big whitebait and Taihu new whitebait and identification method thereof

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