CN105441470A - Gene mapping expression vector for detecting plant autophagy phenomenon and application - Google Patents
Gene mapping expression vector for detecting plant autophagy phenomenon and application Download PDFInfo
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Abstract
The invention belongs to the technical field of biology, and particularly relates to construction of a gene vector for detecting a cell autophagy phenomenon. A protein of an Atg8 gene mapping expression vector is expressed in a suspension cell after being fused with a green fluorescence protein (GFP), and subcellular localization is performed by detecting the position of a fused protein through a laser scanning confocal microscope. Through a simple, convenient and accurate method for locating in living cells, a reference basis is laid for the research of the molecular mechanism of the tobacco cell autophagy phenomenon.
Description
Technical field
The invention belongs to biological technical field, be specifically related to the structure of the genophore detecting cell autophagy phenomenon, and utilize described gene location expression study on the carrier cell autophagy phenomenon.
Background technology
Autophagy (Autophagy) is an important degradation mechanism in cell, senescence protein in cell can be transported to lysosome degrade by autophagy.Cell autophagy phenomenon is extensively present in most of eukaryote and comprises in the cell of yeast, fruit bat, plant and human body, being that cell cycle utilizes and self damaged a kind of important way of the nutritive substances such as the amino acid comprised in protein, organoid, is also a kind of adaptation to environment formed in eukaryote evolutionary process.
The process of cell autophagy can be roughly divided into four-stage: one, and cell receives as after the autophagy inducement signals such as hunger, nutritional factor shortage or disease and pest invasion and attack, produces a certain amount of flat free phospholipid bilayer membrane structure, be centered around and treat around degradation product in endochylema; Two, membrane structure constantly extends, and endochylema, organoid is waited for that degradation product holds, forms the autophagosome closed; Three, autophagosome is transported in lysosome also to merge with it by cytoskeletal microtubule network system and forms autophagy lysosome; Four, after forming autophagy lysosome, the membrane structure of autophagosome is degraded, and degraded product is transported in endochylema to be waited to re-use, and residue is trapped in endochylema or is transported out cell.Research in recent years shows in plant pest course of infection, and autophagy has played very large evil effect, even without the existence of any paraprotein, loses the generation that autophagocytosis just can cause disease.The expression of some autophagy related genes (Autophagyrelatedgene, Atg) plays an important role to the maturation that autophagy regulates and controls, and in the different steps that autophagosome is formed, different Atg carries out different regulation and control to it.
Atg8 extremely guards in yeast, Arabidopis thaliana.Have experiment to show, in eukaryote, the protein complexes of Atg5-Atg12 coding take part in the formation of autophagosome; Atg8-phosphatidylethanolamine complex body controls the expansion of autophagosome.Have and show that Atg8 and homologous gene thereof can be located autophagosome clearly and therefore become the marker gene of autophagy phenomenon about yeast and mammiferous research.In plant, is also no lack of the research about Atg8 gene.Su etc. have cloned OsAtg8 from paddy rice, and the joint access function demonstrating Atg8 is by experiment conservative in paddy rice, therefore infer that this gene has probably played vital role in paddy rice autophagy system.Certainly, Atg8 gene has played important effect in autophagy process, but wants clear and definite Atg8 to participate in a series of molecule mechanisms of the formation of autophagy, still lacks relevant Identification and detection material at present.
Summary of the invention
The invention provides a kind of gene location expression carrier detecting eukaryotic cells autophagy phenomenon and cytolysosome, described genophore comprises a relevant autophagy phenomenon found in tobacco, participates in the gene GFP of conservative homologous gene NtAtg8 and the mark fluorescent albumen that autophagosome is formed as reporter gene.
For achieving the above object, the present invention is by the following technical solutions:
A kind of construction process detecting the gene location expression carrier of plant autophagy phenomenon, with the large gold dollar tobacco bred of safflower for material, extract RNA, reverse transcription obtains cDNA, take NtAtg8-F/NtAtg8-R as primer pair, carry out pcr amplification NtAtg8 gene, double digestion system process DNA fragmentation also reclaims, and adopts same double digestion system process pFF19-GFP plasmid and reclaims; NtAtg8 gene containing same sticky end is connected with pFF19-GFP carrier, connects product conversion in DH5 α competent cell, select positive bacterium colony sequence verification.
The system that described NtAtg8 gene is connected with pFF19-GFP carrier is: enzyme cuts each 1 μ l of rear plasmid, Buffer1 μ l, T4 ligase enzyme 1 μ l, and moisturizing to 10 μ l, 16 DEG C of connections are spent the night.
Described NtAtg8-F/NtAtg8-R primer pair sequence is as shown in SEQIDNO:1/SEQIDNO:2, and wherein GGTACC is KpnI restriction enzyme site, and GGATCC is BamHI restriction enzyme site.
The fragment of described NtAtg8 gene is as shown in SEQIDNO:3.
The fusion rotein aminoacid sequence of described NtAtg8 gene translation is as shown in SEQIDNO:4.
The reaction conditions of described pcr amplification is as follows: 94 DEG C of denaturation 5min, 94 DEG C of 30s, 62 DEG C of 30s, 72 DEG C of 40s, 35 circulations, then 72 DEG C of 10min, 16 DEG C of 10min, 4 DEG C of preservations.
Described double digestion system is: BufferK2.5 μ L, BamHI2.5 μ L, SphI2.5 μ L, template 20 μ L, adds aqua sterilisa to 50 μ L.
Detect an application for the gene location expression carrier of plant autophagy phenomenon, NtAtg8-pFF19-GFP plasmid is proceeded to tobacco suspension cell, by confocal laser scanning microscope suspension cell, location autophagosome.
Described method plasmid being proceeded to tobacco suspension cell is Biolistic mediated transformation method.
Described gene location expression carrier is analyzing the application of vegetable cell autophagy molecule mechanism.
Beneficial effect of the present invention is: utilize the carrier that the present invention builds, express in suspension cell after the protein fusion that its albumen and goal gene are marked, the Subcellular Localization of being undertaken by the position of laser confocal microscope detection fusion albumen, a kind of easy and method of positioning in viable cell accurately, for the molecule mechanism of research tobacco cell autophagy phenomenon provides reference frame.
Accompanying drawing explanation
Fig. 1 is NtAtg8-pFF19-GFP carrier digestion verification figure, and wherein M is 1KbPlusDNALadder, and 1 is NtAtg8-pFF19-GFP plasmid enzyme restriction figure;
Fig. 2 is NtAtg8-pFF19-GFP genophore location map.
Embodiment
A kind of construction process detecting the gene location expression carrier of plant autophagy phenomenon, with the large gold dollar tobacco bred of safflower for material, extract RNA, reverse transcription obtains cDNA, take NtAtg8-F/NtAtg8-R as primer pair, carry out pcr amplification NtAtg8 gene, double digestion system process DNA fragmentation also reclaims, and adopts same double digestion system process pFF19-GFP plasmid and reclaims; NtAtg8 gene containing same sticky end is connected with pFF19-GFP carrier, connects product conversion in DH5 α competent cell, select positive bacterium colony sequence verification.
The system that described NtAtg8 gene is connected with pFF19-GFP carrier is: enzyme cuts each 1 μ l of rear plasmid, Buffer1 μ l, T4 ligase enzyme 1 μ l, and moisturizing to 10 μ l, 16 DEG C of connections are spent the night.
Described NtAtg8-F/NtAtg8-R primer pair sequence is as shown in SEQIDNO:1/SEQIDNO:2, and wherein GGTACC is KpnI restriction enzyme site, and GGATCC is BamHI restriction enzyme site.
The fragment of described NtAtg8 gene is as SEQIDNO:3.
The reaction conditions of described pcr amplification is as follows: 94 DEG C of denaturation 5min, 94 DEG C of 30s, 62 DEG C of 30s, 72 DEG C of 40s, 35 circulations, then 72 DEG C of 10min, 16 DEG C of 10min, 4 DEG C of preservations.
Described double digestion system is: BufferK2.5 μ L, BamHI2.5 μ L, SphI2.5 μ L, template 20 μ L, adds aqua sterilisa to 50 μ L.
Detect an application for the gene location expression carrier of plant autophagy phenomenon, NtAtg8-pFF19-GFP plasmid is proceeded to tobacco suspension cell, by confocal laser scanning microscope suspension cell, location autophagosome.
Described method plasmid being proceeded to tobacco suspension cell is Biolistic mediated transformation method.
Described gene location expression carrier is analyzing the application of vegetable cell autophagy molecule mechanism.
Below in conjunction with specific embodiment, set forth the present invention further, these embodiments are only not used in for illustration of the present invention and limit the scope of the invention.The test method of unreceipted actual conditions in the following example, usually conveniently condition.
(1) NtAtg8-pFF19-GFP plasmid construction
Use DNAMAN6.0, in conjunction with the relevant tobacco Atg8 gene coded sequence design primer pair sequence of including in NCBI as shown in SEQIDNO:1 and SEQIDNO:2.
Use Tris-EDTApH=8.0 solution dilution to working concentration 10 μMs after synthetic.
Adopt the method for PCR, template is tobacco Hongda cDNA, and amplification NtAtg8 gene, PCR reaction kit is purchased from Beijing Quanshijin Biotechnology Co., Ltd.Reaction system is: 5 μ L10 × IIbuffer, cDNA are 2 μ L, and each 2.5 μ L of upstream and downstream primer, TransTaqHiFiDNA polysaccharase 0.3 μ L, dNTP4 μ L, add aqua sterilisa to 50 μ L.
Amplification condition is: 94 DEG C of denaturation 5min; 94 DEG C of 30s; 62 DEG C of 30s; 72 DEG C of 40s, 35 circulations; 72 DEG C of 10min; 16 DEG C of 10min.Amplified production is by electrophoresis detection in 1% sepharose and recovery obtains the double chain DNA fragment containing KpnI and BamHI restriction enzyme site.
TaKaRa Bioisystech Co., Ltd KpnI and BamHI enzyme system of cutting is used to digest the fragment obtaining having sticky end, BufferK2.5 μ L, BamHI2.5 μ L, SphI2.5 μ L, template 20 μ L, aqua sterilisa 22.5 μ L, and adopt same double digestion system digestion pFF19-GFP plasmid.
The SolutionI ligase enzyme of TaKaRa Bioisystech Co., Ltd is adopted to be connected with the carrier pFF19-GFP (purchased from addgene company) containing same sticky end by the NtAtg8 gene containing sticky end.Linked system is: NtAtg8 gene 4 μ L, pFF19-GFP plasmid 1 μ L, SolutionI1 μ L.Mixed solution is placed in 16 DEG C after 2 hours and connection product is transformed into bacillus coli DH 5 alpha competent cell with heat shock method, on the LB substratum containing Amp (50 μ g/mL), screening has the bacterial strain of resistance and carries out bacterium colony PCR inspection.
Thus, select positive bacterium colony and can obtain NtAtg8-pFF19-GFP plasmid after sequence verification.
(2) preparation of tobacco suspension cell
Preparing reagent required in the liquid nutrient medium of tobacco suspension cell is macroelement, CaCl
2, trace element, molysite, VB1, sucrose, 2,4-D, desired concn is as follows:
Mother liquor one (10 ×): macroelement comprises KNO
319g/L, NH
4nO
316.5g/L, MgSO
47H
2o3.7g/L, KH
2pO
41.7g/L.
Mother liquor two (100 ×): CaCl
233.2g/L.
Mother liquor three (200 ×): trace element comprises KI33.2mg/200ml, H
3bO
3248mg/200ml, MnSO
4h
20676mg/200ml, ZnSO
47H
2o344mg/200mL, Na
2moO
42H
2o10mg/200mL, CuSO
45H
2o1mg/200mL, CoCl
26H
2o1mg/200mL.
Mother liquor four (200 ×): molysite comprises Na
2eDTA3.73g/500mL, FeSO
47H
2o2.78g/500mL.
Mother liquor five (1000 ×): VB
14mg/ml.
Sucrose: 30g/L.
2,4-D(1000×):2mg/mL。
According to above concentration preparation BY-2 liquid suspension cell culture medium, adjust its pH to 5.8-6.0, add in another liquid medium within volume be 0.8% agar be configured to BY-2 solid medium.Sterilizing in high-pressure steam sterilizing pan (if produce white precipitate in substratum after sterilizing, rocking rear disappearance, then without impact).
Cultivate and after configuring, get the callus of incubation growth on solid medium in advance, crush with the spoon of sterilizing, the liquid nutrient medium that rear access newly configures.26 DEG C, 130rpm shaking table is cultivated about seven days, callus is placed in 26 DEG C of cultivations.
After seven days, observe the BY-2 cell in liquid medium within, if suspension cell becomes glassy yellow, namely can be used to carry out Biolistic mediated transformation.Callus can grow 2-3 month in solid medium, repeats for preparation BY-2 suspension cell.
Suspension cell need be transferred once in 7 days again, and draw ripe suspension cell with liquid-transfering gun (cutting off rifle head most advanced and sophisticated) and add in new substratum, general proportions is 1:10, if need urgent need, suitably can improve inoculative proportion to shorten the cell maturation time.Callus needs a switching in month once, gets a fritter and puts into new culture dish, can put 3 fritters in each culture dish during switching with rifle choicest.
(3) by Biolistic mediated transformation method, NtAtg8-pffmGFP Plastid transformation is entered tobacco suspension cell
First need to prepare bronze suspension.Getting 60mg bronze joins in 1.5mL import centrifuge tube; In centrifuge tube, add the ethanolic soln that 1mL70% newly prepares, vortex 3-5min, leave standstill the centrifugal 5s of 15min, 3000rpm, carefully remove supernatant; Repeat previous step three times, add 1mL sterilized water, vibration 1min, leaves standstill the centrifugal 2s of 1min, 3000rpm, removes supernatant; Add 50% glycerine 1mL (bronze concentration 60 μ g/ μ L) ,-20 DEG C of preservations.
Next needs to prepare micro-bullet (6 secondary amounts).Get ready bronze vortex 5min; Get 50 μ L bronzes and put into 1.5mL sterile centrifugation tube respectively; Under vorticity, in centrifuge tube, first put into appropriate NtAtg8-pFF19-GFP genophore (1 μ g/ μ L), after be sequentially added into 50 μ LCaCl
2(2.5M, autoclaving), 20 μ L spermidines (0.1M, filtration sterilization); Abundant vibration 3min, leaves standstill 1min to ensure that DNA molecular is behind bronze surface fully sedimentation, the centrifugal 2s of 3000rpm; As far as possible fully supernatant discarded, adds 140 and adds 140 μ L70% washing with alcohol bronzes, do not touch bronze; Abandon supernatant, add 140 μ L absolute ethanol washing bronzes; Abandon supernatant, add 48 μ L dehydrated alcohols and flick tube wall, bronze is mixed, and the micro-bullet in each centrifuge tube can for 6 rifles.
Again, the preparation work of carrying out particle gun is needed.Particle gun is placed in Bechtop to carry out aseptic technique; 70% ethanol is used to carry out disinfection to vacuum chamber; Disk can be split, stop net and micro-bullet film 70% ethanol sterilizing 30min, be placed in aseptic filter paper dries for subsequent use; Get outstanding even genophore-bronze 6 μ L and evenly put middle section in aseptic micro-bullet carrier film, dry up for subsequent use on Bechtop; Disk loading fixed cap can be split screw.To micro-missile-borne body of micro-bullet be housed and stop that net loads micro-bullet launching device.
Finally, with particle gun, NtAtg8-pFF19-GFP genophore is bombarded.Open voltage stabilized source, vacuum pump and nitrogen valve switch; Acceptor material is put into sample chamber, range 9cm; Exhaust, takes out sample, seals up with sealed membrane; The suspension cell room temperature lucifuge of bombarding is placed, spends the night.
(4) autophagosome is located by confocal laser scanning microscope suspension cell
First the preparation of slide will be carried out.Draw appropriate ultrapure water droplet with suction pipe and bombard position (slightly rubescent) in bronze, pressure-vaccum several times gently, and cell is fully suspended; Draw appropriate cell suspension drop on slide glass, covered gently.
Then observed by laser confocal microscope.Being inverted by slide is put on Stage microscope, focuses by bright field, finds the cell sending bright green fluorescence after getting a clear view by dark-field; The z-axis of setting laser copolymerization Jiao is taken pictures to cell.
Fluorescent places in figure, in the distribution of cell internal specific, form size structure conforms to the cytolysosome of vegetable cell, therefore, this carrier can be utilized as the gene positioning carrier altogether of cell autophagy corpusculum.
Claims (10)
1. one kind is detected the construction process of the gene location expression carrier of plant autophagy phenomenon, it is characterized in that: with the large gold dollar tobacco bred of safflower for material, extract RNA, reverse transcription obtains cDNA, take NtAtg8-F/NtAtg8-R as primer pair, carry out pcr amplification NtAtg8 gene, double digestion system process DNA fragmentation also reclaims, and adopts same double digestion system process pFF19-GFP plasmid and reclaims; NtAtg8 gene containing same sticky end is connected with pFF19-GFP carrier, connects product conversion in DH5 α competent cell, select positive bacterium colony sequence verification.
2. the construction process detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 1, it is characterized in that: the system that described NtAtg8 gene is connected with pFF19-GFP carrier is that enzyme cuts each 1 μ l of rear plasmid, Buffer1 μ l, T4 ligase enzyme 1 μ l, moisturizing to 10 μ l, 16 DEG C of connections are spent the night.
3. the construction process detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 1, it is characterized in that: described NtAtg8-F/NtAtg8-R primer pair sequence is as shown in SEQIDNO:1/SEQIDNO:2, wherein GGTACC is KpnI restriction enzyme site, and GGATCC is BamHI restriction enzyme site.
4. the construction process detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 1, is characterized in that: the fragment of described NtAtg8 gene is as shown in SEQIDNO:3.
5. the construction process detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 1, is characterized in that: the fusion rotein aminoacid sequence of described NtAtg8 gene translation is as shown in SEQIDNO:4.
6. the construction process detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 1, it is characterized in that: the reaction conditions of described pcr amplification is as follows: 94 DEG C of denaturation 5min, 94 DEG C of 30s, 62 DEG C of 30s, 72 DEG C of 40s, 35 circulations, then 72 DEG C of 10min, 16 DEG C of 10min, 4 DEG C of preservations.
7. the construction process detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 1, is characterized in that: described double digestion system is: BufferK2.5 μ L, BamHI2.5 μ L, SphI2.5 μ L, template 20 μ L, adds aqua sterilisa to 50 μ L.
8. detect an application for the gene location expression carrier of plant autophagy phenomenon, it is characterized in that: NtAtg8-pFF19-GFP plasmid is proceeded to tobacco suspension cell, by confocal laser scanning microscope suspension cell, location autophagosome.
9. the application detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 6, is characterized in that: described method plasmid being proceeded to tobacco suspension cell is Biolistic mediated transformation method.
10. the application detecting the gene location expression carrier of plant autophagy phenomenon as claimed in claim 6, is characterized in that: described gene location expression carrier is analyzing the application of vegetable cell autophagy molecule mechanism.
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Cited By (2)
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CN107058373A (en) * | 2017-04-07 | 2017-08-18 | 中国烟草总公司郑州烟草研究院 | One carry NtRBSC1 genes transient expression vector |
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US20150299719A1 (en) * | 2011-08-30 | 2015-10-22 | Korea University Research And Business Foundation | Transgenic tree induced by rabg3bca and use thereof |
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Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
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CN107058373A (en) * | 2017-04-07 | 2017-08-18 | 中国烟草总公司郑州烟草研究院 | One carry NtRBSC1 genes transient expression vector |
CN109191467A (en) * | 2018-08-01 | 2019-01-11 | 华中科技大学鄂州工业技术研究院 | A kind of prediction technique and device of cell autophagy phenotype |
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