CN104177488B - One species specificity is for the aptamer of Neutrokine-α albumen and application thereof - Google Patents

One species specificity is for the aptamer of Neutrokine-α albumen and application thereof Download PDF

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CN104177488B
CN104177488B CN201410342519.8A CN201410342519A CN104177488B CN 104177488 B CN104177488 B CN 104177488B CN 201410342519 A CN201410342519 A CN 201410342519A CN 104177488 B CN104177488 B CN 104177488B
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吕静
邓涛
张治位
朱修篁
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Beijing CapitalBio MedLab Co., Ltd.
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Abstract

The invention provides the species specificity aptamer for Neutrokine α albumen, it has the activity preferably combining Neutrokine α albumen, may be used for preparation and becomes test kit thus specific screening and removal Neutrokine α albumen.

Description

One species specificity is for the aptamer of Neutrokine-α albumen and application thereof
Technical field
The invention belongs to biological technical field, specifically, the present invention relates to for systemic lupus erythematosus many Peptide.
Background technology
Systemic lupus erythematosus (sle) (SLE) is presently considered to be autoimmune disease, wherein the abnormal superfunction of bone-marrow-derived lymphocyte and A large amount of abnormal generation of immunoglobulin γ (IgG) autoantibody plays pivotal role.This pathological process causes Ig to be coated with The disappearance of cell and destruction, the fixing and cutting of complement protein and chemotaxin (chemotaxin), vasoactive peptide and Destructive enzyme release in the tissue.
The concurrent atherosclerosis (AS) of systemic lupus erythematosus (sle) (SLE) is one of main cause of death of SLE.As far back as 1976 Year, it has been observed that SLE mortality curve in " bimodal " pattern, one is in activeness lupus commitment septicemia High rate, another is the high rate of inactivity lupus late stage myocardial infarction.Although various Disease epizootic are arranged Execute the survival rate substantially increasing Patients with SLE, but AS remains the main cause causing SLE death. The case-control of lupus erythematosus (age, race, and sex match) research shows: in the age lupus erythematosus less than 50 years old In patient, 31-37% patient shows the representative mark of AS pathological changes, and the crowd only having 9-15% in matched group shows This represent mark;In the age patient more than or equal to 50 years old, the lupus patient of 70-80% shows Atherosclerosis Change the representative mark of pathological changes, and in comparison crowd, the people of only 21-45% has this representative mark.
SLE is characterised by manifestations form.In disease process, the patient of 95% has told muscle skeleton disease altogether Disease, 80% shows skin injury, and 85% has hematologic disease, and 60% has neurological disorders, and 60% has heart and lung diseases, 30%~50% Having kidney disease, 40% has gastroenteropathy, and 15% has thrombosis and 15% to have ocular disease.Most patient (95%) goes back warp By at the systemic conditions the most all existed, such as tired, uncomfortable, fever, anorexia with lose weight.Most of patients experiences Burst and the alleviation disease phase alternately.Permanent alleviation (not having symptom when not treating) is the rarest.Before 50 years, most It is diagnosed as patient's survival of SLE less than 5 years.Now, within 10 years, survival is more than 90%, and this is mainly based upon early diagnosis, antiinflammatory of suiting the medicine to the illness And immunosuppressant therapy.The common cause of the death is the infection that immunosuppressant causes.
Result of study shows: include that hypertension, obesity, diabetes, smoking, hypercholesterolemia, postmenopausal state etc. exist Interior conventional risk factors all can not explain the reason that in patients with SLE, coronary heart disease increases the weight of completely, and systemic lupus erythematosus (sle) is originally Body (in the case of non-life-time service glucocorticoid) is still that an independent hazard factor.Although disease course and systemic red Yabbi skin ulcer damage index is all the independent predictor promoting atherosclerosis (carotid atherosclerotic plaque), but how lupus increases dynamic The occurrence risk of pulse atherosclerosis is not yet fully apparent from.
Conventional use antimalarial drug, anti-inflammatory agent and immunosuppressive drug in SLE treats.When symptom is difficult to control to, right Non-steroidal anti-inflammatory agent supplements with 17-hydroxy-11-dehydrocorticosterone.Additionally, the active SLE that major organs is got involved needs to use the radical of cyclophosphamide Sex therapy.
Up to now, the most not can be used for curing SLE and/or in long-term basis, improving the cause of disease of quality of the life of patient Property treatment.But, the development in antibody technique recently and to having identified further of factor causing this autoimmune disease Through opening the probability using monoclonal antibody as therapeutic choice.Especially, the favorable method for the treatment of SLE will be and cause The specific treatment that a large amount of pathologic immune responses excessively produced of polyclone autoantibody interact or correct it.By Pathogeny in SLE relates generally to the B cell of imbalance, and of particular concern is can the monoclonal antibody of targeting B cell.Latent B cell surface antigen target be CD19, CD20, CD21 and CD22.Additionally, IL-10, IL-1ra, IL-12 are regulation immunity The important cytokine of response, and especially raise during the burst of SLE patient.IL-10 and anti-double-chain DNA (dsDNA) from The blood plasma level of body antibody often reflects the disease activity of the patient suffering from SLE.The IL-10 level raised and the disease of SLE patient Sick activity relevant (Park etc., Clin.Exp.Rheumatol.1998 May-June;16 (3): 283-8).But, IL-10 It is that immune system is had polyphenic cytokine, and known its also participates in reducing proinflammatory response.
SLE patient has carried out using the clinical trial of monoclonal antibody.Especially, to relate to antibody profit appropriate in several tests Former times monoclonal antibody (Rituximab), a kind of gomphosis mouse anti-CD-20 monoclonal antibody for treating non Hodgkin lymphom. Robak and Robak (2009) notices, results of these tests demonstrate the activity that this antibody is higher in SLE patient, and Develop the antibody (Ofatumumab, IMMU-106 and GA-101) of several new targeting CD20.Other reports monoclonal anti The clinical trial of body activity in SLE uses anti-CD22 antibody, epratuzumab (Epratuzumab), anti-TNF alpha antibodies, English Husband's profit former times monoclonal antibody (Infliximab), anti-IL-10 antibody, B-N10 (Llorente etc., Arthritis Rheum.2000 8 Month;43 (8): 1790-800), anti-CD40L antibodies, IDEC 131 and BG 9588, BLYS inhibitor, Baily monoclonal antibody (Belimumab), anti-IL6 receptor antibody, the appropriate gram of female monoclonal antibody (Toclimumab) of profit and anti-C5 antibody are according to storehouse pearl monoclonal antibody (Eculizumab) complete.
Neutrokine-α albumen (SEQ ID NO:1) is a member of tnf ligand family, itself and APRIL (28.7%), TNF α (16.2%) and Lymphotoxin-α (LT α) (14.1%) enjoy Amino acid sequence identity (Moore, et Al., (1999) Science 285:260-263).The formal name of Neutrokine-α is the super family of tumor necrosis factor (part) Race member 13B (TNFSF13b).285 amino acid whose polypeptide of total length Neutrokine-α gene code, its 47th to 73 It is cross-film district between aminoacid, is II type embrane-associated protein distinctive non-hydrophobic sequence before cross-film district.With TNF family Other members are the same, and Neutrokine-α plays a role with the form of trimer protein.When Neutrokine-α is at cell surface After expression, cell lysis outskirt at the 134th amino acids, in order to discharge the trimer of biologic activity.
Known Neutrokine-α with from three kinds of tumor necrosis factor receptor super family not isoacceptor be combined.They are Cross-film activator and CAM interaction body, B cell activating factor receptor, B cell maturation antigen.The expression of receptor is principally limited to B Lymphocyte.Believe that the major part effect of Neutrokine-α is all mediated by BAFF-R, because at Neutrokine-α table The major defect reached in the B cell component of defect or BAFF-R expression deficient mice and is failed to understand in TACI or BCMA deficient mice Aobvious.
When detecting Neutrokine-α albumen in vitro and in vivo, Neutrokine-α is shown to promote B cell Breed, break up and survive.It addition, Neutrokine-α also shows that some effects to T cell.By genetic engineering chemical conversion excessively The mice expressing Neutrokine-α has the periphery B cell increasing number and the immunoglobulin concentrations increased.It addition, Neutrokine-α transgenic mice shows autoimmune phenotype, and it is similar with see in people's systemic lupus erythematosus (sle), bag Include generation autoantibody and glomerulonephritis related symptoms.Research later shows at autoimmune disease such as systemic red yabbi Neutrokine-alpha levels in the serum of skin ulcer, rheumatoid arthritis and Patients with Sjogren Syndrome and/or synovial fluid is also by upper Adjust.Therefore, being Neutrokine-alpha-2 antagonists in the view that scientific circles are universal has treatment in terms for the treatment of autoimmune disease Effect.
Detailed Description Of The Invention
It is an object of the invention to provide can the aptamer of specific binding Neutrokine-α albumen, thus realize by In human body, Neutrokine-α is combined, separate or function is suppressed, thus reaches systemic lupus erythematosus, rheumatoid Arthritic effect.
The described oligonucleotide sequence that can identify Neutrokine-α albumen, including SEQ ID No.2-15, and uses it In an oligonucleotide sequence just can complete the recognition detection to Neutrokine-α albumen;
The preparation method of described one group of oligonucleotide sequence that can identify Neutrokine-α albumen comprises the following steps:
1, synthesis is for the ssDNA oligonucleotide library (5 '-TCA GTC GCT TCG CCG TCT CCT of screening TC----
N35----GCA CAA GAG GGA GAC CCC AGA GGG-3 '), wherein N35 is 35 random oligonucleotides;
2, SELEX screening is carried out after being mixed with Neutrokine-α albumen respectively by oligonucleotide library, it is thus achieved that aptamer Enriched library;
3, after SELEX has screened, the aptamer enriched library obtained is carried out cloning and sequencing;
4, selecting the high copy ssDNA occurred in sequencing result, carry out affine specific checking, screening obtains and can identify The oligonucleotide sequence of Neutrokine-α albumen.
Detailed description of the invention
Embodiment:
1, the preparation of Neutrokine-α albumen
The mode using yeast well known to those skilled in the art recombinant expressed obtains to be had and Neutrokine-α albumen Identical bioactive Neutrokine-α albumen, this protein sequence is as shown in SEQ ID NO:1;The concentration of protein solution is 10mg/ml。
2, library and the synthesis of primer
2.1, synthesis is for the ssDNA oligonucleotide library (5 '-AATTCACTTACTTAACCAATCCGG----of screening N35----ACACAAGAGTGAGAATTAGAGCG-3 '), wherein N35 is 35 random oligonucleotides;
Primer P1:AATTCACTTACTTAACCAATCCGG;
Primer P2:CGCTCTAATTCTCACTCTTGTGT.
2.2, the SELEX screening of aptamer, concrete grammar is as follows:
2.2.1ssDNA with the combination of Neutrokine-α albumen, separate, concrete grammar is as follows:
Take the ssDNA oligonucleotide library 4 μ L of 100 μMs, with 2 × combine buffer and be diluted to 100 μ l, 95 DEG C of degeneration 5min, adds 100 μ l Neutrokine-α albumen after ice bath 10min, shaking table combines 50min, then 6000rpm is centrifuged 7min, abandons Supernatant, then with 1 × combine buffer and wash precipitation, abandon supernatant;Adding 1 in precipitation × combine buffer 100 μ L, 96 DEG C add Hot 5min, then 15000rpm is centrifuged 10min, takes supernatant, and precipitation is again heated and is centrifuged, and merges supernatant, then can divide SsDNA level library of affinity is had from obtaining with Neutrokine-α albumen;Described 2 × combine buffer be 20 × combine slow Rush liquid distilled water and dilute the solution after 10 times, described 1 × combine buffer be 20 × combine buffer distilled water dilution 20 Solution after Bei;Described 20 × combine buffer formulation be 1M NaCl, 50mM KCl, 500mM Tris-HCl, 10mM MgCl2、pH 7.4。
2.2.2 ssDNA with Neutrokine-α albumen combination, separate, concrete grammar is as follows:
By step 2.2.1 isolated can ssDNA protein bound with Neutrokine-α, then with 100 μ l Neutrokine-α albumen shaking table combines 30min, subsequent step with step 2.2.1, separable to and Neutrokine-α albumen There is ssDNA level library of affinity.
2.2.3 asymmetric PCR amplification ssDNA, concrete grammar is as follows:
To step 2.2.2 separate obtain ssDNA level library carry out asymmetric PCR amplification, cumulative volume be 25 μ l not Non-symmetric PCR amplification system is: 10 × PCR buffer: 2 μ l;P1 (10 μMs): 1 μ l;P2 (0.2 μM): 1 μ l;DNTP (each 2.5mM): 0.4μl;MgCl2(25mM): 1.2 μ l;SsDNA template (0.2 μ g/ μ l): 2 μ l;Taq archaeal dna polymerase (5u/ μ l): 0.2 μ l; DdH2O:17.2 μ l;PCR response parameter: 94 DEG C of denaturations 4min, then carries out 94 DEG C of degeneration 30s of 40 circulations, 58 DEG C of annealing 30s, 72 DEG C extend 20s, and last 72 DEG C extend 7min;
2.2.4 the mensuration of affinity, concrete grammar is as follows:
2.2.4.1 amplification: expand ssDNA the level screened with the primer P1 asymmetric PCR with digoxigenin labeled Library, amplification condition and parameter are identical with the asymmetric PCR amplification system of step 2.2.3 and parameter;
2.2.4.2 with protein binding: take the PCR primer 100 μ L of step 2.2.4.1 amplification gained, 95 DEG C of degeneration 5min, ice Adding in 100 μ L albumen after bath 10min, be sufficiently mixed, at room temperature combine 30min, then 6000rpm is centrifuged, and separates albumen With supernatant, albumen includes and the ssDNA of the band digoxigenin labeled of combination in albumen, supernatant is unconjugated SsDNA, does a blank being not added with ssDNA simultaneously, i.e. with 2 × combine buffer and replace PCR primer, carry out aforesaid operations equally;
2.2.4.3 washing: by albumen with 1 × combine buffer 500 μ L and wash 1 time, 6000rpm is centrifugal, abandons supernatant, takes egg In vain;
2.2.4.4 be combined with enzyme mark rabbit anti digoxin antibody: in albumen, add the excess of 100 μ L1:900TBS dilutions Enzyme mark rabbit anti digoxin antibody, after being sufficiently mixed, reaction 10min, the ssDNA of the digoxigenin labeled being allowed in albumen are combined;
Described TBS is 0.5M Tris-NaCl solution, and compound method is: first water-soluble 8.5~9g NaCl, then adds Tris- HCl (0.5M, pH7.6) solution 100ml, finally adds water and is settled to 1L;0.5M Tris-HCl (pH7.6,100ml) solution is prepared Method: weigh Tris 6.06g, adds distilled water 40ml and dissolves, and drips dense HCl and adjusts pH to 7.6, is settled to 100ml.
2.2.4.5 washing: 6000rpm is centrifuged, and removes supernatant, then with 1 × combine buffer 500 μ L washing 3 times, obtain albumen;
2.2.4.6TMB (tetramethyl benzidine) colour developing: add the 400 μ resuspended albumen of L distilled water, add 200 μ L TMB Nitrite ion, after lucifuge colour developing 10min, terminates reaction with 2mol/L H2SO4200 μ L, measures the light absorption value OD450 at 450nm, This value i.e. reflects the affinity of the ssDNA being combined with bacterium, i.e. OD combines, and blank carries out above-mentioned steps 2.2.4.3 equally, 2.2.4.4,2.2.4.5 and 2.2.4.6, obtain blank corresponding absorbance OD blank;
Described TMB nitrite ion uses conventional compound method preparation.
2.2.4.7 the molar concentration of DNA in PCR primer is measured: take the PCR primer of step 2.2.4.1 amplification gained, with The initial ssDNA library knowing Concentraton gradient is standard substance, with Bandscan software as image analysis software, uses ethidium bromide DNA content in agarose gel electrophoresis method quantitative determination PCR primer, it is thus achieved that the molar concentration of corresponding DNA, and then can calculate Go out the DNA molal quantity in 100 μ L PCR primer.
2.2.4.8 the affinity in corresponding library is calculated:
2.3 repeat screening, method particularly includes: using each product screening library as next round taking turns asymmetric PCR, weight Multiple above-mentioned SELEX screens step 2.2, until affinity no longer rises, eventually passes 14 screenings taken turns and obtains the suitable of ssDNA Gamete enriched library.After asymmetric PCR expands, condition, with step the most above, is cloned and checks order, obtain that copy number is the highest 18 18 aptamers are carried out affine specificity verification by individual effective ssDNA respectively, wherein have 4 specificitys not unique, therefore give up Abandon.Therefore obtain 14 and Neutrokine-α albumen is had preferable affine specific oligonucleotide sequence (aptamer), specifically Sequence is as follows:
The concrete data of affinity are as follows:
Aptamer title Affinity Aptamer title Affinity
NKXA1 0.49 NKXA10 0.49
NKXA3 0.51 NKXA11 0.48
NKXA4 0.46 NKXA13 0.57
NKXA5 0.49 NKXA14 0.54
NKXA6 0.52 NKXA15 0.48
NKXA7 0.54 NKXA17 0.42
NKXA9 0.51 NKXA18 0.47
2.4, specificity and the affinity of 20 aptamers are analyzed
Fluorescently-labeled adaptor sequence is hatched with Neutrokine-α albumen, carries out flow cytometry detection, wherein Article 14, sequence shows high fluorescent, uses GraphPad Prism5.0 software to do nonlinear regression for saturation curve bent 14 high-affinity adaptor sequence are used identical experimental implementation by line respectively, and having obtained every is the Kd value configured:
Aptamer title Kd value (nM) Aptamer title Kd value (nM)
NKXA1 20.5 NKXA10 19.5
NKXA3 21.2 NKXA11 21.2
NKXA4 24.7 NKXA13 22.5
NKXA5 25.6 NKXA14 27.2
NKXA6 26.5 NKXA15 25.1
NKXA7 23.1 NKXA17 26.4
NKXA9 28.6 NKXA18 30.1
Wherein the Kd value of NKXA10 is minimum, illustrates can be quickly combined with target protein and Stability Analysis of Structures is not readily separated.
Use the secondary structure of 14 aptamers of DNAMAN software building and calculate their minimum free energy, its knot Structure minimum free energy is the least, and structure is the most stable.
2.5 aptamer specificity analyses
It is respectively adopted BSA, APRIL albumen, Neutrokine-α albumen and 14 aptamers and carries out specific detection, pass through Binding tests finds, these 14 sequences do not combine with BSA, APRIL albumen, and only protects with Neutrokine-α protein binding Hold higher specificity.
3, the application of aptamer
By the 14 of the present invention aptamers, its 5 ' end adds the labelling with magnetic mark magnetic bead, can be prepared as examination Agent box, pharmaceutical composition, by with contacting blood, by magnetic screening can realize for Neutrokine-α albumen in blood Special separation, thus reach the effect of systemic lupus erythematosus, rheumatoid arthritis.

Claims (4)

1. the oligonucleotide sequence identifying Neutrokine-α albumen, it is characterised in that its sequence such as SEQ ID No.2 sequence Shown in row.
2. the oligonucleotide sequence shown in claim 1 is for screening the application of Neutrokine-α albumen.
3. pharmaceutical composition, reagent or the test kit that the oligonucleotide sequence shown in claim 1 prepares.
4. the oligonucleotide sequence shown in claim 1 is used for treating the pharmaceutical composition of lupus erythematosus, reagent or examination in preparation Application in agent box.
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CN201610294349.XA Division CN105713083A (en) 2014-07-13 2014-07-13 Specific aptamer NKXA17 for Neutrokine-alpha protein and application of specific aptamer NKXA17
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CN201610294348.5A Division CN105732799A (en) 2014-07-13 2014-07-13 Aptamer NKXA18 specifically aiming at Neutrokine-alpha protein and application thereof

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