CN105732800A - Aptamer NKXA15 specifically aiming at Neutrokine-alpha protein and application thereof - Google Patents
Aptamer NKXA15 specifically aiming at Neutrokine-alpha protein and application thereof Download PDFInfo
- Publication number
- CN105732800A CN105732800A CN201610294350.2A CN201610294350A CN105732800A CN 105732800 A CN105732800 A CN 105732800A CN 201610294350 A CN201610294350 A CN 201610294350A CN 105732800 A CN105732800 A CN 105732800A
- Authority
- CN
- China
- Prior art keywords
- neutrokine
- albumen
- aptamer
- sle
- dna
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
- C07K14/705—Receptors; Cell surface antigens; Cell surface determinants
- C07K14/70575—NGF/TNF-superfamily, e.g. CD70, CD95L, CD153, CD154
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/115—Aptamers, i.e. nucleic acids binding a target molecule specifically and with high affinity without hybridising therewith ; Nucleic acids binding to non-nucleic acids, e.g. aptamers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
- C12N2310/16—Aptamers
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Genetics & Genomics (AREA)
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Biomedical Technology (AREA)
- Molecular Biology (AREA)
- Zoology (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Health & Medical Sciences (AREA)
- Wood Science & Technology (AREA)
- Biochemistry (AREA)
- Biophysics (AREA)
- Physics & Mathematics (AREA)
- Microbiology (AREA)
- Plant Pathology (AREA)
- Cell Biology (AREA)
- Immunology (AREA)
- Toxicology (AREA)
- Gastroenterology & Hepatology (AREA)
- Medicinal Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
The invention provides an aptamer specifically aiming at a Neutrokine-alpha protein. The aptamer has better activity of binding with the Neutrokine-alpha protein and can be used for preparing a kit, thus specifically screening and removing the Neutrokine-alpha protein.
Description
Technical field
The invention belongs to biological technical field, specifically, the present invention relates to for systemic lupus erythematosus many
Peptide.
Background technology
Systemic lupus erythematosus (sle) (SLE) is presently considered to be autoimmune disease, wherein the abnormal superfunction of bone-marrow-derived lymphocyte and
A large amount of abnormal generation of immunoglobulin γ (IgG) autoantibody plays pivotal role.This pathological process causes Ig to be coated with
The disappearance of cell and destruction, the fixing and cutting of complement protein and chemotaxin (chemotaxin), vasoactive peptide and
Destructive enzyme release in the tissue.
The concurrent atherosclerosis (AS) of systemic lupus erythematosus (sle) (SLE) is one of main cause of death of SLE.As far back as 1976
Year, it has been observed that SLE mortality curve in " bimodal " pattern, one is in activeness lupus commitment septicemia
High rate, another is the high rate of inactivity lupus late stage myocardial infarction.Although various Disease epizootic are arranged
Execute the survival rate substantially increasing Patients with SLE, but AS remains the main cause causing SLE death.
The case-control of lupus erythematosus (age, race, and sex match) research shows: in the age lupus erythematosus less than 50 years old
In patient, 31-37% patient shows the representative mark of AS pathological changes, and the crowd only having 9-15% in matched group shows
This represent mark;In the age patient more than or equal to 50 years old, the lupus patient of 70-80% shows Atherosclerosis
Change the representative mark of pathological changes, and in comparison crowd, the people of only 21-45% has this representative mark.
SLE is characterised by manifestations form.In disease process, the patient of 95% has told muscle skeleton disease altogether
Disease, 80% shows skin injury, and 85% has hematologic disease, and 60% has neurological disorders, and 60% has heart and lung diseases, and 30%~50% has kidney
Dirty disease, 40% has gastroenteropathy, and 15% has thrombosis and 15% to have ocular disease.Most patient (95%) is also subject to greatly
The systemic conditions all existed time most, such as tired, uncomfortable, fever, anorexia with lose weight.Most of patients experience burst with
Alleviate the disease phase alternately.Permanent alleviation (not having symptom when not treating) is the rarest.Before 50 years, majority is diagnosed as
Patient's survival of SLE was less than 5 years.Now, within 10 years, survival is more than 90%, and this is mainly based upon early diagnosis, to the ill antiinflammatory and immunity and presses down
System treatment.The common cause of the death is the infection that immunosuppressant causes.
Result of study shows: include that hypertension, obesity, diabetes, smoking, hypercholesterolemia, postmenopausal state etc. exist
Interior conventional risk factors all can not explain the reason that in patients with SLE, coronary heart disease increases the weight of completely, and systemic lupus erythematosus (sle) is originally
Body (in the case of non-life-time service glucocorticoid) is still that an independent hazard factor.Although disease course and systemic red
Yabbi skin ulcer damage index is all the independent predictor promoting atherosclerosis (carotid atherosclerotic plaque), but how lupus increases dynamic
The occurrence risk of pulse atherosclerosis is not yet fully apparent from.
Conventional use antimalarial drug, anti-inflammatory agent and immunosuppressive drug in SLE treats.When symptom is difficult to control to, right
Non-steroidal anti-inflammatory agent supplements with 17-hydroxy-11-dehydrocorticosterone.Additionally, the active SLE that major organs is got involved needs to use the radical of cyclophosphamide
Sex therapy.
Up to now, the most not can be used for curing SLE and/or in long-term basis, improving the cause of disease of quality of the life of patient
Property treatment.But, the development in antibody technique recently and to having identified further of factor causing this autoimmune disease
Through opening the probability using monoclonal antibody as therapeutic choice.Especially, the favorable method for the treatment of SLE will be and cause
The specific treatment that a large amount of pathologic immune responses excessively produced of polyclone autoantibody interact or correct it.By
Pathogeny in SLE relates generally to the B cell of imbalance, and of particular concern is can the monoclonal antibody of targeting B cell.Latent
B cell surface antigen target be CD19, CD20, CD21 and CD22.Exempt from additionally, IL-10, IL-1ra, IL-12 are regulations
The important cytokine of epidemic disease response, and especially raise during the burst of SLE patient.IL-10 and anti-double-chain DNA (dsDNA)
The blood plasma level of autoantibody often reflects the disease activity of the patient suffering from SLE.The IL-10 level raised is with SLE patient's
Disease activity relevant (Park etc., Clin.Exp.Rheumatol.1998 May-June;16(3):283-8).But, IL-
10 is to have polyphenic cytokine to immune system, and known its also participates in reducing proinflammatory response.
SLE patient has carried out using the clinical trial of monoclonal antibody.Especially, to relate to antibody profit appropriate in several tests
Former times monoclonal antibody (Rituximab), a kind of gomphosis mouse anti-CD-20 monoclonal antibody for treating non Hodgkin lymphom.
Robak and Robak (2009) notices, the result of these tests demonstrates the activity that this antibody is higher in SLE patient, and
Have been developed for the antibody (Ofatumumab, IMMU-106 and GA-101) of several new targeting CD20.Other reports monoclonal
Antibody in SLE activity clinical trial use anti-CD22 antibody, epratuzumab (Epratuzumab), anti-TNF alpha antibodies,
Infliximab (Infliximab), anti-IL-10 antibody, B-N10 (Llorente etc., Arthritis Rheum.2000
August;43 (8): 1790-800), anti-CD40L antibodies, IDEC 131 and BG 9588, BLYS inhibitor, Baily monoclonal antibody
(Belimumab), anti-IL6 receptor antibody, the appropriate gram of female monoclonal antibody (Toclimumab) of profit and anti-C5 antibody are according to storehouse pearl monoclonal antibody
(Eculizumab) complete.
Neutrokine-α albumen (SEQ ID NO:1) is a member of tnf ligand family, itself and APRIL
(28.7%), TNF α (16.2%) and Lymphotoxin-α (LT α) (14.1%) enjoy Amino acid sequence identity (Moore, et
al.,(1999)Science 285:260-263).The formal name of Neutrokine-α is the super family of tumor necrosis factor (part)
Race member 13B (TNFSF13b).285 amino acid whose polypeptide of total length Neutrokine-α gene code, its 47th to 73
It is cross-film district between amino acids, is II type embrane-associated protein distinctive non-hydrophobic sequence before cross-film district.With TNF family
Other members the same, Neutrokine-α plays a role with the form of trimer protein.When Neutrokine-α is at cell table
After face is expressed, cell lysis outskirt at the 134th amino acids, in order to discharge the trimer of biologic activity.
Known Neutrokine-α with from three kinds of tumor necrosis factor receptor super family not isoacceptor be combined.They are
Cross-film activator and CAM interaction body, B cell activating factor receptor, B cell maturation antigen.The expression of receptor is principally limited to B
Lymphocyte.Believe that the major part effect of Neutrokine-α is all mediated by BAFF-R, because at Neutrokine-α table
Reach defect or BAFF-R and express the major defect in the B cell component of deficient mice in TACI or BCMA deficient mice not
Substantially.
When detecting Neutrokine-α albumen in vitro and in vivo, Neutrokine-α is shown to promote B cell
Breed, break up and survive.It addition, Neutrokine-α also shows that some effects to T cell.By genetic engineering chemical conversion excessively
The mice expressing Neutrokine-α has the periphery B cell increasing number and the immunoglobulin concentrations increased.It addition,
Neutrokine-α transgenic mice shows autoimmune phenotype, and it is similar with see in people's systemic lupus erythematosus (sle), bag
Include generation autoantibody and glomerulonephritis related symptoms.Research later shows at autoimmune disease such as systemic red yabbi
Neutrokine-alpha levels in the serum of skin ulcer, rheumatoid arthritis and Patients with Sjogren Syndrome and/or synovial fluid is also by upper
Adjust.Therefore, being Neutrokine-alpha-2 antagonists in the view that scientific circles are universal has treatment in terms for the treatment of autoimmune disease
Effect.
Summary of the invention
It is an object of the invention to provide can the aptamer of specific binding Neutrokine-α albumen, thus realize by
In human body, Neutrokine-α is combined, separate or function is suppressed, thus reaches systemic lupus erythematosus, rheumatoid
Arthritic effect.
The described oligonucleotide sequence that can identify Neutrokine-α albumen, including SEQ ID No.2-15, and uses it
In an oligonucleotide sequence just can complete the recognition detection to Neutrokine-α albumen;
The preparation method of described one group of oligonucleotide sequence that can identify Neutrokine-α albumen comprises the following steps:
1, synthesis is for the ssDNA oligonucleotide library (5 '-TCA GTC GCT TCG CCG TCT CCT TC----of screening
N35----GCA CAA GAG GGA GAC CCC AGA GGG-3 '), wherein N35 is 35 random oligonucleotides;
2, SELEX screening is carried out after being mixed with Neutrokine-α albumen respectively by oligonucleotide library, it is thus achieved that aptamer is enriched with
Library;
3, after SELEX has screened, the aptamer enriched library obtained is carried out cloning and sequencing;
4, selecting the high copy ssDNA occurred in sequencing result, carry out affine specific checking, screening obtains and can identify
The oligonucleotide sequence of Neutrokine-α albumen.
Detailed description of the invention
Embodiment:
1, the preparation of Neutrokine-α albumen
The mode using yeast well known to those skilled in the art recombinant expressed obtain have identical with Neutrokine-α albumen
Bioactive Neutrokine-α albumen, this protein sequence is as shown in SEQ ID NO:1;The concentration of protein solution is 10mg/
ml。
2, library and the synthesis of primer
2.1, synthesis for screening ssDNA oligonucleotide library (5 '-AATTCACTTACTTAACCAATCCGG----
N35----ACACAAGAGTGAGAATTAGAGCG-3 '), wherein N35 is 35 random oligonucleotides;
Primer P1:AATTCACTTACTTAACCAATCCGG;
Primer P2:CGCTCTAATTCTCACTCTTGTGT.
2.2, the SELEX screening of aptamer, concrete grammar is as follows:
2.2.1 ssDNA with Neutrokine-α albumen combination, separate, concrete grammar is as follows:
Take the ssDNA oligonucleotide library 4 μ L of 100 μMs, with 2 × combine buffer and be diluted to 100 μ l, 95 DEG C of degeneration 5min, ice
Adding 100 μ l Neutrokine-α albumen after bath 10min, shaking table combines 50min, then 6000rpm is centrifuged 7min, abandons supernatant, so
Afterwards with 1 × combine buffer and wash precipitation, abandon supernatant;In precipitation, add 1 × combine buffer 100 μ L, 96 DEG C of heating 5min,
Then 15000rpm is centrifuged 10min, takes supernatant, to precipitation again heat and be centrifuged, merge supernatant, the most separable obtain with
Neutrokine-α albumen has ssDNA level library of affinity;Described 2 × combine buffer be 20 × combine buffer with double
Steam water and dilute the solution after 10 times, described 1 × combine buffer be 20 × combine after buffer distilled water dilutes 20 times molten
Liquid;Described 20 × combine buffer formulation be 1M NaCl, 50mM KCl, 500mM Tris-HCl, 10mM MgCl2, pH 7.4.
2.2.2 ssDNA with Neutrokine-α albumen combination, separate, concrete grammar is as follows:
By step 2.2.1 isolated can ssDNA protein bound with Neutrokine-α, then with 100 μ l
Neutrokine-α albumen shaking table combines 30min, subsequent step with step 2.2.1, separable to and Neutrokine-α albumen
There is ssDNA level library of affinity.
2.2.3 asymmetric PCR amplification ssDNA, concrete grammar is as follows:
Step 2.2.2 being separated ssDNA the level library obtained and carries out asymmetric PCR amplification, cumulative volume is the asymmetric of 25 μ l
PCR amplification system is: 10 × PCR buffer: 2 μ l;P1 (10 μMs): 1 μ l;P2 (0.2 μM): 1 μ l;DNTP (each 2.5mM): 0.4 μ
l;MgCl2(25mM): 1.2 μ l;SsDNA template (0.2 μ g/ μ l): 2 μ l;Taq archaeal dna polymerase (5u/ μ l): 0.2 μ l;DdH2O:
17.2μl;PCR response parameter: 94 DEG C of denaturations 4min, then carries out 94 DEG C of degeneration 30s of 40 circulations, 58 DEG C of annealing 30s, 72
DEG C extend 20s, last 72 DEG C extend 7min;
2.2.4 the mensuration of affinity, concrete grammar is as follows:
2.2.4.1 amplification: expand ssDNA the level literary composition screened with the primer P1 asymmetric PCR with digoxigenin labeled
Storehouse, amplification condition and parameter are identical with the asymmetric PCR amplification system of step 2.2.3 and parameter;
2.2.4.2 with protein binding: take the PCR primer 100 μ L of step 2.2.4.1 amplification gained, 95 DEG C of degeneration 5min, ice bath
Adding after 10min in 100 μ L albumen, be sufficiently mixed, at room temperature combine 30min, then 6000rpm is centrifuged, separate albumen with
Supernatant, includes in albumen and the ssDNA of the band digoxigenin labeled of combination in albumen, is unconjugated ssDNA in supernatant,
Do a blank being not added with ssDNA simultaneously, i.e. with 2 × combine buffer and replace PCR primer, carry out aforesaid operations equally;
2.2.4.3 washing: by albumen with 1 × combine buffer 500 μ L and wash 1 time, 6000rpm is centrifugal, abandons supernatant, takes albumen;
2.2.4.4 be combined with enzyme mark rabbit anti digoxin antibody: in albumen, add the enzyme of the excess of 100 μ L 1: 900TBS dilutions
Mark rabbit anti digoxin antibody, after being sufficiently mixed, reaction 10min, the ssDNA of the digoxigenin labeled being allowed in albumen are combined;
Described TBS is 0.5M Tris-NaCl solution, and compound method is: first water-soluble 8.5~9g NaCl, then adds Tris-HCl
(0.5M, pH7.6) solution 100ml, finally adds water and is settled to 1L;0.5M Tris-HCl (pH7.6,100ml) solution preparation side
Method: weigh Tris 6.06g, adds distilled water 40ml and dissolves, and drips dense HCl and adjusts pH to 7.6, is settled to 100ml.
2.2.4.5 washing: 6000rpm is centrifuged, and removes supernatant, then with 1 × combine buffer 500 μ L washing 3 times, obtain albumen;
2.2.4.6 TMB (tetramethyl benzidine) colour developing: add the 400 μ resuspended albumen of L distilled water, adds 200 μ L TMB colour developings
Liquid, after lucifuge colour developing 10min, terminates reaction with 2mol/L H2SO4 200 μ L, measures the light absorption value OD450 at 450nm, this value
The affinity of ssDNA that i.e. reflection is combined with bacterium, i.e. OD combination, blank carries out above-mentioned steps 2.2.4.3 equally, 2.2.4.4,
2.2.4.5 and 2.2.4.6, blank corresponding absorbance OD is obtained blank;
Described TMB nitrite ion uses conventional compound method preparation.
2.2.4.7 the molar concentration of DNA in PCR primer is measured: take the PCR primer of step 2.2.4.1 amplification gained, with
The initial ssDNA library of concentration known gradient is standard substance, with Bandscan software as image analysis software, uses bromination second
DNA content in ingot agarose gel electrophoresis method quantitative determination PCR primer, it is thus achieved that the molar concentration of corresponding DNA, and then can count
Calculate the DNA molal quantity in 100 μ L PCR primer.
2.2.4.8 the affinity in corresponding library is calculated:
2.3 repeat screening, method particularly includes: using each product screening library as next round taking turns asymmetric PCR, repeat
Above-mentioned SELEX screens step 2.2, until affinity no longer rises, eventually passes 14 screenings taken turns and obtains the adaptation of ssDNA
Sub-enriched library.After asymmetric PCR expands, condition, with step the most above, is cloned and checks order, obtain that copy number is the highest 18
18 aptamers are carried out affine specificity verification by individual effective ssDNA respectively, wherein have 4 specificitys not unique, therefore give up
Abandon.Therefore obtain 14 and Neutrokine-α albumen is had preferable affine specific oligonucleotide sequence (aptamer), specifically
Sequence is as follows:
Aptamer title | Adaptor sequence |
NKXA1 | 5′-AATTCACTTACTTAACCAATCCGG ATATTTCCAACACTCCAACTTTCCCTACAATTCTAACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA3 | 5′-AATTCACTTACTTAACCAATCCGG TCACATTACAAATACATTCATCCCCAACACACCAAACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA4 | 5′-AATTCACTTACTTAACCAATCCGG TTCTCTTACCCAAATTCTTCCAACCTTACCTTCCAACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA5 | 5′-AATTCACTTACTTAACCAATCCGG TCTATAAAATATTTCAATCTCTCTCTATATCATTCACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA6 | 5′-AATTCACTTACTTAACCAATCCGG CCTCTACTAATCAAACTCTTACCCACCCTCTATCTACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA7 | 5′-AATTCACTTACTTAACCAATCCGG TCACATATATCTCAACTCTATCCACTCTCTCAACTACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA9 | 5′-AATTCACTTACTTAACCAATCCGG CAACTCAATATCTTCCCTTAACTTATCCCTACACCACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA10 | 5′-AATTCACTTACTTAACCAATCCGG ATCTACACCCCCACCATCTACCAACCACCACCCAAACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA11 | 5′-AATTCACTTACTTAACCAATCCGG CACTCATACATATCAACACCTCACTCCTTATTCCCACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA13 | 5′-AATTCACTTACTTAACCAATCCGG CATTATATCAATTACACATCTCCATTTAATCAACAACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA14 | 5′-AATTCACTTACTTAACCAATCCGG TTACTTCTTCATTCATAATACCATCCTAATAACTTACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA15 | 5′-AATTCACTTACTTAACCAATCCGG ACCTACACAATCTATCACTTATAACTTCAAACTTTACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA17 | 5′-AATTCACTTACTTAACCAATCCGG AATTTTAATACAAATCTCTAAATAAACCACCCCAAACACAAGAGTGAGAATTAGAGCG-3′ |
NKXA18 | 5′-AATTCACTTACTTAACCAATCCGG AATATACTAATACCCATAAACTTAAATCTCAACTCACACAAGAGTGAGAATTAGAGCG-3′ |
The concrete data of affinity are as follows:
Aptamer title | Affinity | Aptamer title | Affinity |
NKXA1 | 0.49 | NKXA10 | 0.49 |
NKXA3 | 0.51 | NKXA11 | 0.48 |
NKXA4 | 0.46 | NKXA13 | 0.57 |
NKXA5 | 0.49 | NKXA14 | 0.54 |
NKXA6 | 0.52 | NKXA15 | 0.48 |
NKXA7 | 0.54 | NKXA17 | 0.42 |
NKXA9 | 0.51 | NKXA18 | 0.47 |
2.4, specificity and the affinity of 20 aptamers are analyzed
Fluorescently-labeled adaptor sequence is hatched with Neutrokine-α albumen, carries out flow cytometry detection, wherein 14
Sequence shows high fluorescent, uses GraphPad Prism5.0 software to do nonlinear regression curve for saturation curve, point
The other experimental implementation identical to 14 high-affinity adaptor sequence employings, having obtained every is the Kd value configured:
Aptamer title | Kd value (nM) | Aptamer title | Kd value (nM) |
NKXA1 | 20.5 | NKXA10 | 19.5 |
NKXA3 | 21.2 | NKXA11 | 21.2 |
NKXA4 | 24.7 | NKXA13 | 22.5 |
NKXA5 | 25.6 | NKXA14 | 27.2 |
NKXA6 | 26.5 | NKXA15 | 25.1 |
NKXA7 | 23.1 | NKXA17 | 26.4 |
NKXA9 | 28.6 | NKXA18 | 30.1 |
Wherein the Kd value of NKXA10 is minimum, illustrates can be quickly combined with target protein and Stability Analysis of Structures is not readily separated.
Use the secondary structure of 14 aptamers of DNAMAN software building and calculate their minimum free energy, its knot
Structure minimum free energy is the least, and structure is the most stable.
2.5 aptamer specificity analyses
It is respectively adopted BSA, APRIL albumen, Neutrokine-α albumen and 14 aptamers and carries out specific detection, through combining
Test finds, these 14 sequences do not combine with BSA, APRIL albumen, and only keeps relatively with Neutrokine-α protein binding
High specificity.
3, the application of aptamer
By the 14 of the present invention aptamers, its 5 ' end adds the labelling with magnetic mark magnetic bead, can be prepared as into test kit,
Pharmaceutical composition, by with contacting blood, by magnetic screening can realize for the spy of Neutrokine-α albumen in blood
Different separation, thus reach the effect of systemic lupus erythematosus, rheumatoid arthritis.
Sequence table
< 110 > horse Solenognathus
< 120 > mono-species specificity is for the aptamer NKXA15 of Neutrokine-α albumen and application thereof
〈160〉16
〈210〉1
〈211〉285
〈212〉PRT
< 213 > people
〈400〉1
1 MDDSTEREQS RLTSCLKKRE EMKLKECVSI LPRKESPSVR SSKDGKLLAATLLLALLSCC
61 LTVVSFYQVA ALQGDLASLR AELQGHHAEK LPAGAGAPKA GLEEAPAVTAGLKIFEPPAP
121 GEGNSSQNSR NKRAVQGPEE TVTQDCLQLI ADSETPTIQK GSYTFVPWLLSFKRGSALEE
181 KENKILVKET GYFFIYGQVL YTDKTYAMGH LIQRKKVHVF GDELSLVTLFRCIQNMPETL
241 PNNSCYSAGI AKLEEGDELQ LAIPRENAQI SLDGDVTFFG ALKLL
〈210〉2
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA1
5′- AATTCACTTACTTAACCAATCCGG ATATTTCCAACACTCCAACTTTCCCTACA
ATTCTAACACAAGAGTGAGAATTAGAGCG-3′
〈210〉3
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA3
5′- AATTCACTTACTTAACCAATCCGG TCACATTACAAATACATTCATCCCCAACACA
CCAAACACAAGAGTGAGAATTAGAGCG-3′
〈210〉4
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA4
5′- AATTCACTTACTTAACCAATCCGG TTCTCTTACCCAAATTCTTCCAACCTTACC
TTCCAACACAAGAGTGAGAATTAGAGCG-3′
〈210〉5
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA5
5′- AATTCACTTACTTAACCAATCCGG TCTATAAAATATTTCAATCTCTCTCTATATCAT
TCACACAAGAGTGAGAATTAGAGCG-3′
〈210〉6
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA6
5′- AATTCACTTACTTAACCAATCCGG CCTCTACTAATCAAACTCTTACCCACCCTCT
ATCTACACAAGAGTGAGAATTAGAGCG-3′
〈210〉7
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA7
5′- AATTCACTTACTTAACCAATCCGG TCACATATATCTCAACTCTATCCACTCTCT
CAACTACACAAGAGTGAGAATTAGAGCG-3′
〈210〉8
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA9
5′- AATTCACTTACTTAACCAATCCGG CAACTCAATATCTTCCCTTAACTTATCCC
TACACCACACAAGAGTGAGAATTAGAGCG-3′
〈210〉9
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA10
5′- AATTCACTTACTTAACCAATCCGG ATCTACACCCCCACCATCTACCAACCACC
ACCCAAACACAAGAGTGAGAATTAGAGCG-3′
〈210〉10
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA11
5′- AATTCACTTACTTAACCAATCCGG CACTCATACATATCAACACCTCACTCCTT
ATTCCCACACAAGAGTGAGAATTAGAGCG-3′
〈210〉11
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA13
5′- AATTCACTTACTTAACCAATCCGG CATTATATCAATTACACATCTCCATTTAA
TCAACAACACAAGAGTGAGAATTAGAGCG-3′
〈210〉12
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA14
5′- AATTCACTTACTTAACCAATCCGG TTACTTCTTCATTCATAATACCATCCTAATA
ACTTACACAAGAGTGAGAATTAGAGCG-3′
〈210〉13
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA15
5′- AATTCACTTACTTAACCAATCCGG ACCTACACAATCTATCACTTATAACTTCAAA
CTTTACACAAGAGTGAGAATTAGAGCG-3′
〈210〉14
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA17
5′- AATTCACTTACTTAACCAATCCGG AATTTTAATACAAATCTCTAAATAAACCAC
CCCAAACACAAGAGTGAGAATTAGAGCG-3′
〈210〉15
<211〉 82
〈212〉DNA
< 213 > artificial sequence
〈400〉NKXA18
5′- AATTCACTTACTTAACCAATCCGG AATATACTAATACCCATAAACTTAAATCTC
AACTCACACAAGAGTGAGAATTAGAGCG-3′
〈210〉16
<211〉23
〈212〉DNA
< 213 > artificial sequence
〈400〉P1
AATTCACTTACTTAACCAATCCGG
〈210〉17
<211〉 24
〈212〉DNA
< 213 > artificial sequence
〈400〉P2
CGCTCTAATTCTCACTCTTGTGT
Claims (5)
1., for a Neutrokine-α albumen for aptamer screening, its sequence is shown in SEQ ID NO:1.
2. the oligonucleotide sequence identifying Neutrokine-α albumen, it is characterised in that shown in SEQ ID No.13.
3. the oligonucleotide sequence shown in claim 2 is for screening the application of Neutrokine-α albumen.
4. pharmaceutical composition, reagent or the test kit that the oligonucleotide sequence shown in claim 2 prepares.
5. the oligonucleotide sequence shown in claim 4 is used for treating the pharmaceutical composition of lupus erythematosus, reagent or examination in preparation
Application in agent box.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201610294350.2A CN105732800A (en) | 2014-07-13 | 2014-07-13 | Aptamer NKXA15 specifically aiming at Neutrokine-alpha protein and application thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN201610294350.2A CN105732800A (en) | 2014-07-13 | 2014-07-13 | Aptamer NKXA15 specifically aiming at Neutrokine-alpha protein and application thereof |
Related Parent Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201410342519.8A Division CN104177488B (en) | 2014-07-13 | 2014-07-13 | One species specificity is for the aptamer of Neutrokine-α albumen and application thereof |
Publications (1)
Publication Number | Publication Date |
---|---|
CN105732800A true CN105732800A (en) | 2016-07-06 |
Family
ID=56288816
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN201610294350.2A Pending CN105732800A (en) | 2014-07-13 | 2014-07-13 | Aptamer NKXA15 specifically aiming at Neutrokine-alpha protein and application thereof |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN105732800A (en) |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN1550501A (en) * | 2003-05-15 | 2004-12-01 | �й�����Ԥ���������IJ�����Ԥ������ | Oligopolynucleotide of inhibiting activity of necrosin in human tumor |
CN101512007A (en) * | 2005-10-13 | 2009-08-19 | 人体基因组科学有限公司 | Methods and compositions for use in treatment of patients with autoantibody positive diseases |
-
2014
- 2014-07-13 CN CN201610294350.2A patent/CN105732800A/en active Pending
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN1550501A (en) * | 2003-05-15 | 2004-12-01 | �й�����Ԥ���������IJ�����Ԥ������ | Oligopolynucleotide of inhibiting activity of necrosin in human tumor |
CN101512007A (en) * | 2005-10-13 | 2009-08-19 | 人体基因组科学有限公司 | Methods and compositions for use in treatment of patients with autoantibody positive diseases |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN111849994B (en) | Aptamer of SARS-CoV-2S protein or RBD protein and application thereof | |
US11180565B2 (en) | Method of enriching a target nucleic acid at a TNFRSF1B gene locus in a sample from a subject with inflammatory bowel disease | |
Schmeling et al. | Efficacy and safety of adalimumab as the first and second biologic agent in juvenile idiopathic arthritis: the German Biologics JIA Registry | |
JP6755241B2 (en) | How to Diagnose Chronic Obstructive Pulmonary Disease (COPD) Using New Molecular Biomarkers | |
JP6755240B2 (en) | How to Diagnose Chronic Obstructive Pulmonary Disease (COPD) Using New Molecular Biomarkers | |
JP6755242B2 (en) | How to Diagnose Chronic Obstructive Pulmonary Disease (COPD) Using New Molecular Biomarkers | |
JP2017518514A (en) | LPA-related protein and RNA expression | |
WO2016050110A1 (en) | Biomarkers for rheumatoid arthritis and usage thereof | |
Vidic et al. | selection approach to develop DNA aptamers for a stem-like cell subpopulation of non-small lung cancer adenocarcinoma cell line A549 | |
CN104177488B (en) | One species specificity is for the aptamer of Neutrokine-α albumen and application thereof | |
JP2018504909A5 (en) | ||
KR20100058222A (en) | Primers capable of simultaneous detecting bovine coronavirus, bovine rotavirus and pestivirus, and simultaneous detection method of diarrhea viruses in ruminants, including cattle, using the same | |
US10584387B2 (en) | Detection of hepatitis delta virus (HDV) for the diagnosis and treatment of Sjögren's syndrome and lymphoma | |
CN105732801A (en) | Aptamer NKXA13 specifically aiming at Neutrokine-alpha protein and application thereof | |
CN105732799A (en) | Aptamer NKXA18 specifically aiming at Neutrokine-alpha protein and application thereof | |
CN105732802A (en) | Aptamer NKXA11 specifically aiming at Neutrokine-alpha protein and application thereof | |
CN105732800A (en) | Aptamer NKXA15 specifically aiming at Neutrokine-alpha protein and application thereof | |
CN105732804A (en) | Aptamer NKXA4 specifically aiming at Neutrokine-alpha protein and application thereof | |
CN105732803A (en) | Aptamer NKXA6 specifically aiming at Neutrokine-alpha protein and application thereof | |
CN105713083A (en) | Specific aptamer NKXA17 for Neutrokine-alpha protein and application of specific aptamer NKXA17 | |
CN105753967A (en) | Nucleic acid aptamer NKXA14 specifically aiming at Neutrokine-alpha protein and application thereof | |
CN105693848A (en) | Aptamer NKXA7 specifically for Neutrokine-alpha protein and application of aptamer NKXA7 | |
CN105693846A (en) | Aptamer NKXA10 specifically for Neutrokine-alpha protein and application of aptamer NKXA10 | |
CN105693847A (en) | Aptamer NKXA9 specifically for Neutrokine-alpha protein and application of aptamer NKXA9 | |
CN105693849A (en) | Aptamer NKXA5 specifically for Neutrokine-alpha protein and application of aptamer NKXA5 |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
C06 | Publication | ||
PB01 | Publication | ||
C10 | Entry into substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
RJ01 | Rejection of invention patent application after publication |
Application publication date: 20160706 |
|
RJ01 | Rejection of invention patent application after publication |