CN101792756B - Method for extracting genomic deoxyribonucleic acid - Google Patents

Method for extracting genomic deoxyribonucleic acid Download PDF

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CN101792756B
CN101792756B CN2010101298185A CN201010129818A CN101792756B CN 101792756 B CN101792756 B CN 101792756B CN 2010101298185 A CN2010101298185 A CN 2010101298185A CN 201010129818 A CN201010129818 A CN 201010129818A CN 101792756 B CN101792756 B CN 101792756B
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dna
muddy liquid
obtains
bacterium
mixing
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CN101792756A (en
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柯海燕
俞萍
李晓晨
孙克非
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Tiangen Biotech Beijing Co Ltd
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Abstract

The invention relates to a method for extracting genomic deoxyribonucleic acid, belonging to the technical field of nucleic acid application in biology. The method comprises the following steps: adding cracking buffer into any one material of plant tissue, animal tissue or bacterium, crushing the material, mixing the material uniformly in vortex to prepare first dirty solution; adding protease K into the first dirty solution, mixing the solution uniformly, and incubating the solution to prepare second dirty solution; and centrifugalizing the second dirty solution to prepare centrifugalized supernate which contains deoxyribonucleic acid. The method does not use liquid nitrogen grinding, does not need enzymolysis or long-term incubation, uses the disposal cracking material which has wide material range, is applicable to plant tissue, animal tissue and bacterium, has short operation time, is directly applied to gene testing, has the advantages of quickness and convenience, high sensitivity, strong specificity, good stability and the like, and can furthest reduce human errors.

Description

A kind of method of extracting genomic deoxyribonucleic acid
Technical field
The present invention relates to a kind of method of extracting genomic deoxyribonucleic acid, belong to biological amplifying nucleic acid applied technical field.
Background technology
Detect at traditional gene type, transgenic, in the strain test experience, people relatively customary way are, adopt manual extracting or buy general genomic deoxyribonucleic acid (hereinafter to be referred as DNA) and extract test kit and carry out.But; No matter be that manual extracting of employing or purchase test kit extract; Whole leaching process all will be got a certain amount of material; Process liquid nitrogen grinding → lysate cracking → hatch → centrifugal → organic extracting (perhaps crossing post) → rinsing several → dry → dissolve (perhaps wash-out) such flow process finally obtains DNA.And often these DNA only are polymerase chain reaction (the polymerase chain reaction as gene identification; Hereinafter to be referred as PCR) template, used once back DNA just to throw away, certainly; Those negative mouselets and those negative Arabidopis thalianas have also been thrown away simultaneously.Perhaps DNA purity that this operation obtains and yield all are high, even but risk that maybe the frostbite operator when not considering to use liquid nitrogen grinding, whole leaching process is because complex steps, and the instrument of use is numerous, and the waiting time is very long.
Summary of the invention
The objective of the invention is to propose a kind of method of extracting genomic deoxyribonucleic acid, adopted special technique, be intended to set up mature and stable, single stage method and directly from various materials, extract DNA, be used for the PCR detection architecture of range gene.
The method of the extraction genomic deoxyribonucleic acid that the present invention proposes may further comprise the steps:
(1-1) lysis buffer is joined in any material in plant tissue, animal tissues or the bacterium; Material is ground; And vortex mixing; Obtain the first muddy liquid, the mass volume ratio of adding is: any in vegetable material, animal material or the bacterium: lysis buffer=10 milligram: 200 microlitres;
(1-2) in the above-mentioned first muddy liquid, adding the mass and size specific concentration is the Proteinase K of 10-20 mg/ml, and the volume of adding is the 5-20 microlitre, and mixing was hatched 5-30 minute under 55-65 ℃, and 80-95 ℃ of heating 3-10 minute obtains the second muddy liquid;
(1-3) the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 8000-13000 rev/min, and centrifugation time is 3-5 minute, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
In the aforesaid method; Consisting of of lysis buffer: the pH value is 8.0, volumetric molar concentration is the 20-50 mmole/liter Tutofusin tris. hydrochloric acid, volumetric molar concentration be the 2.0-4.0 mmole/liter YD 30 and volumetric molar concentration be the 20-50 mmole/liter sodium-chlor.
The method of the extraction genomic deoxyribonucleic acid that the present invention proposes, its advantage is:
1, the most important condition of gene test is to obtain enough DNA, and so-called enough DNA does not need too high to the requirement of its quality and quantity, as long as satisfy the PCR condition.The inventive method has proposed single stage method and has directly extracted DNA and be used for pcr amplification, as the term suggests adopt the single stage method cracking material, results DNA is used for pcr amplification, simple to operate fast, the accurate good reproducibility of result.The benefit of present method is: single stage method is extracted DNA, promptly without liquid nitrogen grinding, does not need enzymolysis and hatches for a long time; Disposable cracking material, material ranges is wide, and plant tissue, animal tissues, bacterium all are suitable for; Running time is short; Directly apply to gene test etc., have advantages such as fast and convenient, highly sensitive, high specificity, good stability, can reduce personal errors to greatest extent.
2, directly PCR is applicable to that purity and yield requirement to DNA are not high experiments; Like gene test etc.; The operator only needs a step that material is mixed with lysate, in case of necessity with material fragmentation, and the centrifugal DNA that obtains; Get 1 microlitre and be used for the PCR reaction system of 20 microlitres, just can confirm having or not of goal gene as template.Such as in the transgenic screening, adopt the method for direct PCR, can instantaneously obtain dna profiling and be used for the PCR evaluation, determine whether to be that transgenic is individual fast, need not spend a lot of time and energy and look after the negative seedling or the young, saved ample resources.In addition, the inventive method also is applicable to experiments such as strain detection, seed purity detection and molecule marker.
The present invention proposes single stage method, DNA extraction method fast, be used for PCR and detect, quick, convenient, safety, efficient is high, good stability, is fit to comprise that the PCR of plant tissue, seed, bacterium and animal tissues detects.
Description of drawings
Fig. 1 is the detected result of the DNA that the embodiment of the invention 1 obtains being carried out the ubiquitin gene pcr amplification.
Fig. 2 obtains the detected result that DNA carries out the agglutinin gene pcr amplification to the embodiment of the invention 2.
Fig. 3 obtains the detected result that DNA carries out the internal control gene pcr amplification to the embodiment of the invention 3.
Fig. 4 obtains the detected result that DNA carries out the universal primer PCR amplification to the embodiment of the invention 4.
Fig. 5 obtains the detected result that DNA carries out the internal control gene pcr amplification to the embodiment of the invention 5.
Embodiment
The method of the extraction genomic deoxyribonucleic acid that the present invention proposes may further comprise the steps:
(1-1) lysis buffer is joined in any material in plant tissue, animal tissues or the bacterium; Material is ground; And vortex mixing; Obtain the first muddy liquid, the mass volume ratio of adding is: any in vegetable material, animal material or the bacterium: lysis buffer=10 milligram: 200 microlitres;
(1-2) in the above-mentioned first muddy liquid, adding the mass and size specific concentration is the Proteinase K of 10-20 mg/ml, and the volume of adding is the 5-20 microlitre, and mixing was hatched 5-30 minute under 55-65 ℃, and 80-95 ℃ of heating 3-10 minute obtains the second muddy liquid;
(1-3) the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 8000-13000 rev/min, and centrifugation time is 3-5 minute, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
In the aforesaid method; Consisting of of lysis buffer: the pH value is 8.0, volumetric molar concentration is the 20-50 mmole/liter Tutofusin tris. hydrochloric acid, volumetric molar concentration be the 2.0-4.0 mmole/liter YD 30 and volumetric molar concentration be the 20-50 mmole/liter sodium-chlor.
Below be the embodiment of the inventive method:
Some reagent sources that adopted in an embodiment: 2x PCRReagent, Proteinase K that TIANGEN Biotech (Beijing) Co., Ltd. produces, and aqua sterilisa.
Embodiment 1:
1,200 μ l lysis buffers are joined in the 10mg Arabidopsis leaf, material is ground, and the vortex mixing, the first muddy liquid obtained;
2, in the above-mentioned first muddy liquid, adding concentration is the Proteinase K of 20mg/ml, and the volume of adding is 10 μ l, and mixing was hatched 10 minutes under 55 ℃, and 85 ℃ of heating 5 minutes obtain the second muddy liquid;
3, the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 13000 rev/mins, and centrifugation time is 3 minutes, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
Embodiment 2:
1,200 μ l lysis buffers are joined in the 10mg soybean leaves, material is ground, and the vortex mixing, the first muddy liquid obtained;
2, in the above-mentioned first muddy liquid, adding concentration is the Proteinase K of 20mg/ml, and the volume of adding is 10 μ l, and mixing was hatched 10 minutes under 55 ℃, and 85 ℃ of heating 5 minutes obtain the second muddy liquid;
3, the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 13000 rev/mins, and centrifugation time is 3 minutes, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
Embodiment 3:
1,200 μ l lysis buffers are joined in the 10mg rice leaf, material is ground, and the vortex mixing, the first muddy liquid obtained;
2, in the above-mentioned first muddy liquid, adding the mass and size specific concentration is the Proteinase K of 20mg/ml, and the volume of adding is 10 μ l, and mixing was hatched 10 minutes under 55 ℃, and 85 ℃ of heating 5 minutes obtain the second muddy liquid;
3, the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 13000 rev/mins, and centrifugation time is 3 minutes, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
Embodiment 4:
1, in joining 200 μ l lysis buffers in the thalline that 800 μ l bacterium liquid collect, and the vortex mixing, the first muddy liquid obtained;
2, in the above-mentioned first muddy liquid, adding the mass and size specific concentration is the Proteinase K of 20mg/ml, and the volume of adding is 10 μ l, and mixing was hatched 10 minutes under 55 ℃, and 85 ℃ of heating 5 minutes obtain the second muddy liquid;
3, the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 13000 rev/mins, and centrifugation time is 3 minutes, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
Embodiment 5:
1,200 μ l lysis buffers are joined in the 10mg mouse tissue, material is ground, and the vortex mixing, the first muddy liquid obtained;
2, in the above-mentioned first muddy liquid, adding the mass and size specific concentration is the Proteinase K of 20mg/ml, and the volume of adding is 10 μ l, and mixing was hatched 30 minutes under 55 ℃, and 85 ℃ of heating 5 minutes obtain the second muddy liquid;
3, the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 13000 rev/mins, and centrifugation time is 3 minutes, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
Below be the instance that the DNA that extracts with the inventive method is detected:
Detect instance 1: the DNA that embodiment 1 is obtained detects:
With the DNA that obtains among the embodiment 1 is template; Arabidopis thaliana UBQ gene specific primer UBQ1-F 5 ' CAGGACAAAGAGGGAATACC 3 '; R 5 ' GTTGAACAGGAGGGATACC 3 '; UBQ2-F 5 ' ATGTTTTTCGATGGATACCA 3 ', R 5 ' GATTGCGTTAGCAGGCTTTG 3 ', UBQ3-F 5 ' ATGTTTTTCGATGGATACCA 3 '; R 5 ' TCAACCCCTCAATGAATAC 3 ' carries out 258bp fragment, 1160bp fragment and the segmental pcr amplification of 1610bp, and PCR reaction system is:
2x?PCR?Reagent 10μl
Forward primer (every liter of 10 micromole are called for short μ M) 0.5 μ l
Reverse primer (every liter of 10 micromole are called for short μ M) 0.5 μ l
Template DNA 1 μ l
Aqua sterilisa is mended to 20 μ l
After reagent all adds well, instantaneous centrifugal, all reagent are collected the pipe end.
The setting of PCR reaction cycle:
94 ℃ of 3min, 1 circulation
94 ℃ 30 seconds (second is hereinafter to be referred as sec), 55 ℃ of 30sec, 72 ℃ of 1min 35 circulations;
72 ℃ of 5min, 1 circulation
The result detects: reaction is got 8 μ l reaction product after finishing, and agarose gel electrophoresis detects.Deposition condition is: with the sepharose of 0.5 * TBE electrophoretic buffer preparation 2% (W/V), it is the bromination second pyridine of 0.5/ml that gel melts back adding content.With PCR reaction product and the sample-loading buffer uniform mixing of 8 μ l, join then in the gel pore in proportion, carry out electrophoresis with the voltage of 5V/cm, electrophoresis time is 40-60 minute.After electrophoresis finishes gel is placed observation and photograph on the gel imaging appearance.
The result sees Fig. 1: point sample is in proper order: 1.DNA marker; 2,3.258bp fragment; 4,5.1160bp fragment; 6,7.1610bp fragment.Visible by Fig. 1, as to adopt the inventive method to extract Arabidopsis leaf DNA carries out the pcr amplification of special primer, and the amplified fragments that obtains is consistent with the amplified fragments of expection size, so can satisfy the requirement of gene test fully with the DNA of present method extraction.
Detect instance 2: the DNA that embodiment 2 is obtained detects:
With the DNA that obtains among the embodiment 2 is template; Soybean lectin gene specific primer lectin-F:5 ' GCCCTCTACTCCACCCCCATCC 3 '; R:5 ' GCCCATCTGCAAGCCTTTTTGTG 3 ', lectin-F5 ' ATGGCCACCTCCAACTTCTCTA 3 ', R 5 ' AGTTCACGTCAATGCCGAT 3 '; Carry out the segmental pcr amplification of 118bp fragment and 600bp, PCR reaction system is:
2x?PCR?Reagent 10μl
Forward primer (10 μ M) 0.5 μ l
Reverse primer (10 μ M) 0.5 μ l
Template DNA 1 μ l
Aqua sterilisa is mended to 20 μ l
After reagent all adds well, instantaneous centrifugal, all reagent are collected the pipe end.
The setting of PCR reaction cycle:
94 ℃ of 3min, 1 circulation
94 ℃ 30 seconds (second is hereinafter to be referred as sec), 55 ℃ of 30sec, 72 ℃ of 1min 35 circulations;
72 ℃ of 5min, 1 circulation
The result detects: reaction is got 8 μ l reaction product after finishing, and agarose gel electrophoresis detects.Deposition condition is: with the sepharose of 0.5 * TBE electrophoretic buffer preparation 2% (W/V), it is the bromination second pyridine of 0.5/ml that gel melts back adding content.With PCR reaction product and the sample-loading buffer uniform mixing of 8 μ l, join then in the gel pore in proportion, carry out electrophoresis with the voltage of 5V/cm, electrophoresis time is 40-60 minute.After electrophoresis finishes gel is placed observation and photograph on the gel imaging appearance.
The result sees Fig. 2, and point sample is in proper order: 1.DNA Marker; 2,3.118bp fragment; 4. positive control; 5,6.600bp fragment; 7. positive control.Visible by Fig. 2, as to adopt the inventive method to extract soybean leaves DNA carries out the pcr amplification of special primer, and the amplified fragments that obtains is consistent with the amplified fragments of positive control size, so can satisfy the requirement of gene test fully with the DNA of present method extraction.
Detect instance 3: the DNA that embodiment 3 is obtained detects: with the DNA that obtains among the embodiment 3 is template; Paddy rice native gene primers F 5 ' CGATGTCAAGCGTTACTCTA 3 '; R 5 ' AGGTGGTGGTGGCTCAATAT 3 ' and F 5 ' CGATGTCAAGCGTTACTCTA 3 '; R 5 ' CAGACATTATCAGCTGGTAC 3 ' carries out the segmental pcr amplification of 272bp fragment and 694bp, and PCR reaction system is:
2x?PCR?Reagent 10μl
Forward primer (10 μ M) 0.5 μ l
Reverse primer (10 μ M) 0.5 μ l
Template DNA 1 μ l
Aqua sterilisa is mended to 20 μ l
After reagent all adds well, instantaneous centrifugal, all reagent are collected the pipe end.
The setting of PCR reaction cycle:
94 ℃ of 3min, 1 circulation
94 ℃ 30 seconds (second is hereinafter to be referred as sec), 55 ℃ of 30sec, 72 ℃ of 1min 35 circulations;
72 ℃ of 5min, 1 circulation
The result detects: reaction is got 8 μ l reaction product after finishing, and agarose gel electrophoresis detects.Deposition condition is: with the sepharose of 0.5 * TBE electrophoretic buffer preparation 2% (W/V), it is the bromination second pyridine of 0.5/ml that gel melts back adding content.With PCR reaction product and the sample-loading buffer uniform mixing of 8 μ l, join then in the gel pore in proportion, carry out electrophoresis with the voltage of 5V/cm, electrophoresis time is 40-60 minute.After electrophoresis finishes gel is placed observation and photograph on the gel imaging appearance.
The result sees Fig. 3, and point sample is in proper order: 1.DNA Marker; 2,3. leaf DNA 272bp fragment; 4,5. rice DNA272bp fragment; 6. positive control; 7,8. leaf DNA 694bp fragment; 9,10. rice DNA694bp fragment; 11. positive control.Visible by Fig. 3, as to adopt the inventive method to extract rice leaf DNA carries out the pcr amplification of special primer, and the amplified fragments that obtains is consistent with the amplified fragments of positive control size, so can satisfy the requirement of gene test fully with the DNA of present method extraction.
Detect instance 4: the DNA that embodiment 4 is obtained detects:
With the DNA that obtains among the embodiment 4 is template, bacterium universal primer 16srDNA-F 5 ' TAGCTGGTCTGAGAGGATGA 3 ', and R 5 ' CTTGCCAGTATCAGATGCAGT ' 3 carries out the segmental pcr amplification of 297bp, and PCR reaction system is:
2x?PCR?Reagent 10μl
Forward primer (every liter of 10 micromole are called for short μ M) 0.5 μ l
Reverse primer (every liter of 10 micromole are called for short μ M) 0.5 μ l
Template DNA 1 μ l
Aqua sterilisa is mended to 20 μ l
After reagent all adds well, instantaneous centrifugal, all reagent are collected the pipe end.
The setting of PCR reaction cycle:
94 ℃ of 3min, 1 circulation
94 ℃ 30 seconds (second is hereinafter to be referred as sec), 55 ℃ of 30sec, 72 ℃ of 1min 35 circulations;
72 ℃ of 5min, 1 circulation
The result detects: reaction is got 8 μ l reaction product after finishing, and agarose gel electrophoresis detects.Deposition condition is: with the sepharose of 0.5 * TBE electrophoretic buffer preparation 2% (W/V), it is the bromination second pyridine of 0.5/ml that gel melts back adding content.With PCR reaction product and the sample-loading buffer uniform mixing of 8 μ l, join then in the gel pore in proportion, carry out electrophoresis with the voltage of 5V/cm, electrophoresis time is 40-60 minute.After electrophoresis finishes gel is placed observation and photograph on the gel imaging appearance.
The result sees Fig. 4, and point sample is in proper order: 1.DNA Marker; 2-5. negative bacterium DNA cloning; 6-9. positive bacteria DNA cloning.Visible by Fig. 4, as to adopt the inventive method to extract DNA of bacteria carries out the pcr amplification of special primer, and the amplified fragments that obtains is consistent with the amplified fragments of expection size, so can satisfy the requirement of gene test fully with the DNA of present method extraction.
Detect instance 5: the DNA that embodiment 5 is obtained detects: with the DNA that obtains among the embodiment 5 is template; Mouse MILGFMAR2 gene specific primer MILGFMAR2-F5 ' ATCCTCCTTCTATAGTCTGTCCAAGAGTAG3 '; R5 ' CCTCCAGAAAAAGCTAGATACTAACCTT 3 ' carries out the segmental pcr amplification of 332bp, and PCR reaction system is:
2x?PCR?Reagent 10μl
Forward primer (every liter of 10 micromole are called for short μ M) 0.5 μ l
Reverse primer (every liter of 10 micromole are called for short μ M) 0.5 μ l
Template DNA 1 μ l
Aqua sterilisa is mended to 20 μ l
After reagent all adds well, instantaneous centrifugal, all reagent are collected the pipe end.
The setting of PCR reaction cycle:
94 ℃ of 3min, 1 circulation
94 ℃ 30 seconds (second is hereinafter to be referred as sec), 55 ℃ of 30sec, 72 ℃ of 1min 35 circulations;
72 ℃ of 5min, 1 circulation
The result detects: reaction is got 8 μ l reaction product after finishing, and agarose gel electrophoresis detects.Deposition condition is: with the sepharose of 0.5 * TBE electrophoretic buffer preparation 2% (W/V), it is the bromination second pyridine of 0.5/ml that gel melts back adding content.With PCR reaction product and the sample-loading buffer uniform mixing of 8 μ l, join then in the gel pore in proportion, carry out electrophoresis with the voltage of 5V/cm, electrophoresis time is 40-60 minute.After electrophoresis finishes gel is placed observation and photograph on the gel imaging appearance.
The result sees Fig. 5, and point sample is in proper order: 1.DNA Marker; 2. negative control; 3. positive control; 4,5. mouse liver DNA cloning; 6,7. mouse heart DNA cloning.Visible by Fig. 5; Adopt the mouse tissue DNA of the inventive method extraction, carry out the pcr amplification of special primer, the amplified fragments that obtains is consistent with the amplified fragments of positive control size; And negative control does not have amplification, so the DNA that extracts with present method can satisfy the requirement of gene test fully.

Claims (1)

1. method of extracting genomic deoxyribonucleic acid is characterized in that this method may further comprise the steps:
(1-1) lysis buffer is joined in any material in plant tissue, animal tissues or the bacterium; Material is ground; And vortex mixing; Obtain the first muddy liquid; The mass volume ratio that adds is: any in vegetable material, animal material or the bacterium: lysis buffer=10 milligram: 200 microlitres, wherein consisting of of lysis buffer: the pH value is 8.0, volumetric molar concentration is the 20-50 mmole/liter Tutofusin tris. hydrochloric acid, volumetric molar concentration be the 2.0-4.0 mmole/liter YD 30 and volumetric molar concentration be the 20-50 mmole/liter sodium-chlor;
(1-2) in the above-mentioned first muddy liquid, adding the mass and size specific concentration is the Proteinase K of 10-20 mg/ml, and the volume of adding is the 5-20 microlitre, and mixing was hatched 5-30 minute under 55-65 ℃, and 80-95 ℃ of heating 3-10 minute obtains the second muddy liquid;
(1-3) the above-mentioned second muddy liquid is carried out spinning, centrifugal rotational speed is 8000-13000 rev/min, and centrifugation time is 3-5 minute, obtains the supernatant of spinning, contains thymus nucleic acid in the supernatant.
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CN102033010B (en) * 2010-11-26 2013-02-20 四川农业大学 Double marking method for gel sampling application sequence and gelation sequence in vertical plate electrophoresis
CN102586231B (en) * 2012-03-07 2013-12-18 天根生化科技(北京)有限公司 Rapid large-segment genome desoxyribonucleic acid extraction method
CN112094840A (en) * 2019-06-17 2020-12-18 南京尧顺禹生物科技有限公司 Rapid preparation method of trace animal sample genome DNA template for genome segment amplification
CN113151255A (en) * 2021-05-26 2021-07-23 中国科学院植物研究所 Method for rapidly extracting plant leaf genome DNA

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CN101173274A (en) * 2006-10-30 2008-05-07 张伟 Bacterium and blood genome DNA extracting reagent kit
CN101343631B (en) * 2007-07-13 2011-06-29 中国科学院海洋研究所 Jellyfish genome DNA extracting method

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