CN101082581A

CN101082581A - Colon bacillus 0157 gene rapid diagnosis reagent kit of annular mediated isothermal amplification technology

Info

Publication number: CN101082581A
Application number: CN 200610035691
Authority: CN
Inventors: 石磊; 曹以诚; 杜正平; 李心晖; 张晓元; 张珍武
Original assignee: GUANGZHOU HUAFENG BIOTECH CO Ltd
Current assignee: GUANGZHOU HUAFENG BIOTECH CO Ltd
Priority date: 2006-05-30
Filing date: 2006-05-30
Publication date: 2007-12-05

Abstract

The Escherichia coli O157 gene quickly diagnosis reagent box which bases on ring medium conduct constant temperature augment technology relates to the bioinstrumentation reagent field. The reagent box is consisted by the di-p-leading object; DNA polymerase; reaction liquid; sample pre-process liquid; fluorescence dye; positive control-liquid and the six liquids lay in the container individually and the leading object has four sleeves. The merits of the reagent box are that: there is no need of the special reagent and device; high specificity; the positive rate can reach above 99.9% and the false positive rate is less 0.1%; high sensitivity; it is easy to identification; it can be identified by the eyes through observing; extensive application: it can be used in quality control with safe and quick detection of the food, medicine, equipage and their primary accessories.

Description

The colon bacillus 0157 gene rapid diagnosis reagent kit of loop-mediated isothermal amplification technique

Technical field

The present invention relates to biological detection reagent, be specifically related to be used for the gene molecule diagnostic reagent of loop-mediated isothermal amplification technique test sample colon bacillus 0157.

Background technology

To the detection method of pathogenic escherichia coli 0157, mainly be to adopt national standard (GB/T4789.6-2003) at present, identify and the automatic biochemical authentication method with pathogenic microorganism isolation identification, morphology.Immunology detection technology, nucleic acid probe, PCR (PCR) the technology equimolecular biological detection method [food safety detection and modern biotechnology, Chemical Industry Press, 2004 year] of report with differential protein also arranged in addition.Wherein the cause of disease detection of nucleic acids all improves a lot at aspects such as rapidity, security, accuracy and sensitivitys, these new technologies are attempted to break through microbiologies such as traditional morphology, biochemical reaction and are detected old model, do not need colon bacillus 0157 is separated purification, and directly its gene and gene outcome are carried out fast detecting with the enrichment liquid of sample or sample, and combine with Protocols in Molecular Biology and bioinformatics means, to accurately, fast, the direction of sensitivity and robotization develops.

Isothermal duplication (Isothermal Amplification) nucleic acid Fast Detection Technique is the rapid progress on the cause of disease nucleic acid detection technique, the ring mediated isothermal amplification gene technology of now having set up (loop-mediated isothermal amplification of DNA, be called for short the LAMP technology) can specificity under isothermy, efficiently, carry out the amplification of nucleic acid apace, have a lot of superiority and (see document Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, AminoN, Hase T.Loop-mediated isothermal amplification of DNA, Nucleic AcidsRes.2000.Jun 15; 28 (12): E63.).This method is normally carried out as follows: step 1, test sample is carried out pre-service, the DNA of the tested sample of rapid extraction or RNA; Two, the preparation of Auele Specific Primer: after determining the target gene of sample to be measured, obtain 2 pairs of Auele Specific Primers, each is a pair of for inner primer and outer primer; Three, carry out loop-mediated isothermal amplification technique (LAMP) reaction; Step 4, analysis and judgement reaction product result.But, in actual applications, for the design of Auele Specific Primer and the preparation of its detection kit is very complicated, so loop-mediated isothermal amplification technique also fails to be extended to fields such as food, medicine, health care, the colon bacillus 0157 that is used for test sample is not seen to be useful on this technology in the gene diagnosis reagent kit that detects colon bacillus 0157 yet.

Summary of the invention

The object of the invention provides a kind of isothermal amplification technique (loop-mediatedisothermal amplication of DNA based on the ring mediation, be called for short LAMP), the gene diagnosis kit of fast detecting sample colon bacillus 0157 can be widely used in fields such as food, medicine, health care.

Gene diagnosis kit provided by the present invention is by (1) two pair of primer; (2) archaeal dna polymerase; (3) reactant liquor; (4) sample pretreatment liquid; (5) fluorescent dye; (6) positive control solution is formed, more than six kinds of liquid place container respectively, wherein said (1) primer has six covers: S represent G/C R represent G/A to press each 50% to synthesize

One, outer primer 1:TTACTACAGGTGAAGGTGG

Outer primer 2:GTGATATAAAATSATCAGCTTGTTC

Inner primer 1:CAGCTAATCCTTGGCCTTTAAAATGTTTTAATGGTTGTCACGAATGAC

Inner primer 2:ACATAGGCAATATTGGCATGACGTTTTAACTGGGGCTAATCCTATAGCA

Or two, outer primer 1:GGTGGAATGGTTGTCACG

Outer primer 2:AGCRATTTCACGTTTTCGT

Inner primer 1:CCTATGTACAGCTAATCCTTGGCTTTTAATGACAAAACACTTTATGACCG

Inner primer 2:ATTGGCATGACGTTATAGGCTACTTTTGCTTGTTCTAACTGGGCTAA

Or three, outer primer 1:GTAGATTCGCTGAATGTCATT

Outer primer 2:TGTTAACAAATCCTGTCACAT

Inner primer 1:TCAATCATCAGTAAAGACGTACCTCTTTTCGCTCTGCAATAGGTACTC

Inner primer 2:CAGGGGATAATTTGTTTGCAGTTGATTTTCGTTCAACAATAAGCCGTAGA

Or four, outer primer 1:TGCAGGGATCAGTCGTAC

Outer primer 2:AGATCATCCAGTGTTGTACG

Inner primer 1:GTCAGTGAGGTTCCACTATGCGTTTTAATCGCCATTCGTTGACTAC

Inner primer 2:TCTGTGGCAAGAGCGATGTTTTTTCCCTCTGTATTTGCCGAA

Or five outer primer 1:CTTCGTTAAATAGTATACGGACA

Outer primer 2:GGCCACATATAAATTATTTTGCT

Inner primer 1:GTGTGGTTAATAACAGACACCGATGTTTTGAGATATCGACCCCTCTTG

Inner primer 2:GGCAGTTATTTTGCTGTGGATATACTTTTATAATCAGACGAAGATGGTCAA

Or six outer primer 1:TGCAAATCAGTCGTCACT

Outer primer 2:CATCGTATACACAGGAGCA

Inner primer 1:TCTGGATGCATCTCTGGTCATTTTTCACTGGTTTCATCATATCTGG

Inner primer 2:AGTTCTGCGTTTTGTCACTGTTTTTTGCCTGACGAAATTCTCTC

(2) archaeal dna polymerase is Bst DNA polymerase (Large Fragment);

(3) reactant liquor is 80 μ l 10mM dNTP, 50 μ l, 10 * ThermoPol Buffer, 20 μ l 150mMMgSO ₄Form;

(4) sample pretreatment liquid is 20mM Tris-HCl[pH 8.0], 2mM EDTA, 1.2% TritonX-100;

(5) fluorescent dye has multiplely, is preferably SYBR Green I;

(6) positive control solution is colon bacillus 0157 gene group DNA

The preparation technology of kit is as follows:

Isothermal amplification technique (the loop-mediated isothermalamplication of DNA of the said ring mediation of the present invention, be called for short LAMP), the method of fast detecting sample colon bacillus 0157 is the special inside and outside primer of two couples that utilizes the Bst archaeal dna polymerase and design according to target-gene sequence, six isolated areas on the specific recognition target sequence, start the endless-chain displacement reaction, start complementary strand in target DNA district synthetic, the go round and begin again stem-circular DNA potpourri of the cauliflower structure that is formed with a lot of rings of result's complementary series on same chain.Carry out in loop-mediated isothermal amplification (the be called for short LAMP reaction) process pyrophosphate ion of separating out from dNTP and the Mg the reaction solution ²⁺In conjunction with, produce accessory substance---magnesium pyrophosphate milky white precipitate, can be by the visual inspection result of determination.The LAMP reaction is to finish in 45 to 90 minutes under constant temperature (about 65 ℃) condition.This comparatively gentle temperature conditions and do not have temperature cycles that required instrument is oversimplified, overcome conventional P CR intrinsic detection time long, pollute easily and detect shortcoming such as cost height.In addition, this detection method is lower to testing staff's technical quality requirement, and practical operation is very easy, does not need special reagent and instrument and equipment, helps setting up rapid screening system with low cost.The LAMP method is a kind of gene magnification method of easy, quick, high degree of specificity.Constant temperature gene amplification technology and round pcr (comprising the fluorescence real-time quantitative PCR technology) are compared, can find that this technology is equivalent to or is better than round pcr on methodology indexs such as sensitivity, specificity and sensing range, and do not rely on any special instrument and equipment and can realize on-the-spot high flux fast detecting, and detect cost far below fluorescent quantitative PCR technique.Domestic do not have the kit of this respect to sell at present as yet.At present in the national standard with microorganism separation and Culture and morphology be accredited as main, in conjunction with the passing method that biochemical analysis and serological typing are identified, Preliminary Identification needs 2-3 days, finishes probation report and needs 10 to 15 days; Adopt the gene diagnosis kit detection among the present invention only to need 2 hours.And, having added fluorescent dye in the reactant liquor of the present invention, qualification result is more visual and clear.

The invention has the beneficial effects as follows 1.. do not need special reagent and equipment; 2.. high specific: use six sections, four primers, whether the existence that just can judge target substance according to whether increasing to be; Positive rate can reach greater than 99.9% false positive rate less than 0.1%; 3.. fast, efficient amplification: about 2 hours detection times 4.. highly sensitive: amplification template only need 10 copies or still less the lowest detection limit reach 10CFU/ml; The recall rate of sample reaches 99%; 5.. identify easy: identify by visual inspection, need not pyrophosphate ion that other any analytical procedures such as electrophoresis separate out from dNTP and the Mg the reaction solution ²⁺In conjunction with, producing accessory substance-magnesium pyrophosphate precipitation, can identify by visual inspection.After adding fluorescent dye, the positive findings colour developing is for green, and negative findings is orange, and is more obviously reliable; 6.. purposes is wide: the detection safely and fast that can be widely used in food, medicine, cosmetics and their supplementary material quality control thereof.

Provide specific embodiment further to set forth technical scheme of the present invention below, but technology of the present invention application is not limited to embodiment.

The preparation of embodiment 1 embodiment 1, kit

(1) in the following sequence through the synthetic oligomerization picodna primer of dna synthesizer: primer can have six covers:

On behalf of G/C R: S represent G/A to press each 50% to synthesize wherein to adopt a cover primer to be

Outer primer 1:TTACTACAGGTGAAGGTGG

Outer primer 2:GTGATATAAAATSATCAGCTTGTTC

Inner primer 1:CAGCTAATCCTTGGCCTTTAAAATGTTTTAATGGTTGTCACGAATGAC

Inner primer 2:ACATAGGCAATATTGGCATGACGTTTTAACTGGGCTAATCCTATAGCA

(2) above-mentioned primer is dissolved in distilled water, places the primer container;

(3) purchase archaeal dna polymerase Bst DNA polymerase (Large Fragment);

(4) configuration reactant liquor: 80 μ l 10mM dNTP, 50 μ l, 10 * ThermoPol Buffer, 20 μ l 150mM MgSO ₄

(5) configuration sample pretreatment liquid: 20mM Tris-HCl[pH 8.0], 2mM EDTA, 1.2% TritonX-100:

(6) purchase fluorescent dye: SYBR Green I places container;

(7) extract colon bacillus 0157 reference culture genomic DNA as positive control solution, place container;

(8) just above-mentioned six groups of containers are dressed up kit, operation instructions are provided, encapsulation.

Preparation technology is summarized as follows:

The application of embodiment 2, gene diagnosis reagent provided by the present invention:

Test sample: test samples such as a little food or body fluid are placed 37 ℃ of cultivations of enrichment liquid.

One, to the pre-service of test sample: extract the DNA gene according to a conventional method:

1, the enrichment liquid of getting 50 μ l incubated overnight is in the eppendorf pipe, centrifugal 2 minutes of 1000rpm, supernatant discarded;

2, add 80 μ l sample pretreatment liquid in centrifuge tube, mix with precipitation gained thalline;

3, boil in the boiling water after 10 minutes and cooled off immediately 10 minutes;

4,10000rpm is centrifugal 2 minutes, and supernatant promptly can be used as stand-by template DNA.

Two, loop-mediated isothermal amplification technique course of reaction:

1. in 200ulPCR pipe preparation reaction system: primer mixture 1.5 μ l, reactant liquor 5.75 μ l, Bstpolymerase Large Fragment 0.5 μ l (8U), ready template DNA 2 μ l add water to 11.5 μ l.

2. the PCR pipe for preparing is reacted 1.5h in 65 ℃

Three, analysis and judgement reaction product result: add 2.5 μ l fluorescent dyes (SYBRGREENI) in reaction product, mixing leaves standstill 5min, if shows green is then positive, orange then negative.

Claims

1, a kind of colon bacillus 0157 gene rapid diagnosis reagent kit of loop-mediated isothermal amplification technique is characterized in that: by (1) two pair of primer; (2) archaeal dna polymerase; (3) reactant liquor; (4) sample pretreatment liquid; (5) fluorescent dye; (6) positive control solution is formed, more than six kinds of liquid place container respectively, wherein said (1) primer has six covers, on behalf of G/C R, S represent G/A 50% to close by each

One, outer primer 1:TTACTACAGGTGAAGGTGG

Outer primer 2:GTGATATAAAATSATCAGCTTGTTC

Inner primer 1:CAGCTAATCCTTGGCCTTTAAAATGTTTTAATGGTTGTCACGAATGAC

Inner primer 2:ACATAGGCAATATTGGCATGACGTTTTAACTGGGCTAATCCTATAGCA

Or two, outer primer 1:GGTGGAATGGTTGTCACG

Outer primer 2:AGCRATTTCACGTTTTCGT

Inner primer 1:CCTATGTACAGCTAATCCTTGGCTTTTAATGACAAAACACTTTATGACCG

Inner primer 2:ATTGGCATGACGTTATAGGCTACTTTTGCTTGTTCTAACTGGGCTAA

Or three, outer primer 1:GTAGATTCGCTGAATGTCATT

Outer primer 2:TGTTAACAAATCCTGTCACAT

Inner primer 1:TCAATCATCAGTAAAGACGTACCTCTTTTCGCTCTGCAATAGGTACTC

Inner primer 2:CAGGGGATAATTTGTTTGCAGTTGATTTTCGTTCAACAATAAGCCGTAGA

Or four, outer primer 1:TGCAGGGATCAGTCGTAC

Outer primer 2:AGATCATCCAGTGTTGTACG

Inner primer 1:GTCAGTGAGGTTCCACTATGCGTTTTAATCGCCATTCGTTGACTAC

Inner primer 2:TCTGTGGCAAGAGCGATGTTTTTTCCCTCTGTATTTGCCGAA

Or five outer primer 1:-CTTCGTTAAATAGTATACGGACA

Outer primer 2:GGCCACATATAAATTATTTTGCT

Inner primer 1:GTGTGGTTAATAACAGACACCGATGTTTTGAGATATCGACCCCTCTTG

Inner primer 2:GGCAGTTATTTTGCTGTGGATATACTTTTATAATCAGACGAAGATGGTCAA

Or six outer primer 1:TGCAAATCAGTCGTCACT

Outer primer 2:CATCGTATACACAGGAGCA

Inner primer 1:TCTGGATGCATCTCTGGTCATTTTTCACTGGTTTCATCATATCTGG

Inner primer 2:AGTTCTGCGTTTTGTCACTGTTTTTTGCCTGACGAAATTCTCTC

(2) archaeal dna polymerase is Bst DNA polymerase (Large Fragment);

(4) sample pretreatment liquid is 20mM Tris-HCl[pH8.0], 2mM EDTA, 1.2%TritonX-100;

(6) positive control solution is colon bacillus 0157 gene group DNA.

2, as the colon bacillus 0157 gene rapid diagnosis reagent kit of the said a kind of loop-mediated isothermal amplification technique of claim 1, it is characterized in that: fluorescent dye is SYBR Green I.