CL2019000957A1 - Método y aparato para representación compacta de datos bioinformáticos. - Google Patents
Método y aparato para representación compacta de datos bioinformáticos.Info
- Publication number
- CL2019000957A1 CL2019000957A1 CL2019000957A CL2019000957A CL2019000957A1 CL 2019000957 A1 CL2019000957 A1 CL 2019000957A1 CL 2019000957 A CL2019000957 A CL 2019000957A CL 2019000957 A CL2019000957 A CL 2019000957A CL 2019000957 A1 CL2019000957 A1 CL 2019000957A1
- Authority
- CL
- Chile
- Prior art keywords
- compact representation
- bioinformatics data
- source models
- data
- codified
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/10—Ontologies; Annotations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
- G16B50/50—Compression of genetic data
-
- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04N—PICTORIAL COMMUNICATION, e.g. TELEVISION
- H04N19/00—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals
- H04N19/10—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals using adaptive coding
- H04N19/102—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals using adaptive coding characterised by the element, parameter or selection affected or controlled by the adaptive coding
- H04N19/13—Adaptive entropy coding, e.g. adaptive variable length coding [AVLC] or context adaptive binary arithmetic coding [CABAC]
-
- H—ELECTRICITY
- H04—ELECTRIC COMMUNICATION TECHNIQUE
- H04N—PICTORIAL COMMUNICATION, e.g. TELEVISION
- H04N19/00—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals
- H04N19/90—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals using coding techniques not provided for in groups H04N19/10-H04N19/85, e.g. fractals
- H04N19/91—Entropy coding, e.g. variable length coding [VLC] or arithmetic coding
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Physics & Mathematics (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Medical Informatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Evolutionary Biology (AREA)
- Biotechnology (AREA)
- Analytical Chemistry (AREA)
- Chemical & Material Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Bioethics (AREA)
- Databases & Information Systems (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Signal Processing (AREA)
- Multimedia (AREA)
- Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Management, Administration, Business Operations System, And Electronic Commerce (AREA)
- Compression, Expansion, Code Conversion, And Decoders (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Measurement And Recording Of Electrical Phenomena And Electrical Characteristics Of The Living Body (AREA)
Abstract
MÉTODO Y APARATO PARA LA COMPRESIÓN DE DATOS DE SECUENCIA DEL GENOMA PRODUCIDOS POR MÁQUINAS DE SECUENCIACIÓN DEL GENOMA. LAS SECUENCIAS DE NUCLEÓTIDOS SE ALINEAN CON UNA O MÁS SECUENCIAS DE REFERENCIA, SE CLASIFICAN SEGÚN LOS GRADOS DE PRECISIÓN COINCIDENTES, SE CODIFICAN COMO UNA MULTIPLICIDAD DE CAPAS DE ELEMENTOS DE SINTAXIS, MEDIANTE EL USO DE DIFERENTES MODELOS DE FUENTE Y CODIFICADORES DE ENTROPÍA PARA CADA CAPA EN LA QUE SE DIVIDEN LOS DATOS.
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| PCT/EP2016/074307 WO2018068829A1 (en) | 2016-10-11 | 2016-10-11 | Method and apparatus for compact representation of bioinformatics data |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CL2019000957A1 true CL2019000957A1 (es) | 2019-08-23 |
Family
ID=57241050
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CL2019000957A CL2019000957A1 (es) | 2016-10-11 | 2019-04-09 | Método y aparato para representación compacta de datos bioinformáticos. |
Country Status (21)
| Country | Link |
|---|---|
| US (1) | US20200051664A1 (es) |
| EP (2) | EP4235680A3 (es) |
| JP (1) | JP2020503580A (es) |
| KR (1) | KR20190071741A (es) |
| CN (1) | CN110168649A (es) |
| AU (1) | AU2016426571A1 (es) |
| BR (1) | BR112019007315A2 (es) |
| CA (1) | CA3039690A1 (es) |
| CL (1) | CL2019000957A1 (es) |
| CO (1) | CO2019003587A2 (es) |
| EA (2) | EA201990935A1 (es) |
| ES (1) | ES2947521T3 (es) |
| FI (1) | FI3526711T3 (es) |
| HU (1) | HUE062006T2 (es) |
| IL (1) | IL265906A (es) |
| MX (1) | MX2019004124A (es) |
| PH (1) | PH12019500793A1 (es) |
| PL (1) | PL3526711T3 (es) |
| SG (1) | SG11201903177PA (es) |
| WO (1) | WO2018068829A1 (es) |
| ZA (1) | ZA201902786B (es) |
Families Citing this family (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2018068827A1 (en) * | 2016-10-11 | 2018-04-19 | Genomsys Sa | Efficient data structures for bioinformatics information representation |
| US20210074381A1 (en) | 2019-09-11 | 2021-03-11 | Enancio | Method for the compression of genome sequence data |
| EP3896698A1 (en) | 2020-04-15 | 2021-10-20 | Genomsys SA | Method and system for the efficient data compression in mpeg-g |
Family Cites Families (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2012168815A2 (en) * | 2011-06-06 | 2012-12-13 | Koninklijke Philips Electronics N.V. | Method for assembly of nucleic acid sequence data |
| US10902937B2 (en) * | 2014-02-12 | 2021-01-26 | International Business Machines Corporation | Lossless compression of DNA sequences |
-
2016
- 2016-10-11 HU HUE16791320A patent/HUE062006T2/hu unknown
- 2016-10-11 EP EP23164744.7A patent/EP4235680A3/en active Pending
- 2016-10-11 WO PCT/EP2016/074307 patent/WO2018068829A1/en active Search and Examination
- 2016-10-11 CN CN201680090052.XA patent/CN110168649A/zh active Pending
- 2016-10-11 EA EA201990935A patent/EA201990935A1/ru unknown
- 2016-10-11 MX MX2019004124A patent/MX2019004124A/es unknown
- 2016-10-11 BR BR112019007315A patent/BR112019007315A2/pt not_active IP Right Cessation
- 2016-10-11 CA CA3039690A patent/CA3039690A1/en not_active Abandoned
- 2016-10-11 PL PL16791320.1T patent/PL3526711T3/pl unknown
- 2016-10-11 JP JP2019520449A patent/JP2020503580A/ja active Pending
- 2016-10-11 KR KR1020197013465A patent/KR20190071741A/ko unknown
- 2016-10-11 AU AU2016426571A patent/AU2016426571A1/en not_active Abandoned
- 2016-10-11 US US16/341,368 patent/US20200051664A1/en active Pending
- 2016-10-11 EP EP16791320.1A patent/EP3526711B1/en active Active
- 2016-10-11 FI FIEP16791320.1T patent/FI3526711T3/fi active
- 2016-10-11 ES ES16791320T patent/ES2947521T3/es active Active
- 2016-10-11 SG SG11201903177PA patent/SG11201903177PA/en unknown
-
2017
- 2017-02-14 EA EA201990922A patent/EA201990922A1/ru unknown
-
2019
- 2019-04-08 IL IL265906A patent/IL265906A/en unknown
- 2019-04-09 CL CL2019000957A patent/CL2019000957A1/es unknown
- 2019-04-11 PH PH12019500793A patent/PH12019500793A1/en unknown
- 2019-04-11 CO CONC2019/0003587A patent/CO2019003587A2/es unknown
- 2019-05-03 ZA ZA201902786A patent/ZA201902786B/en unknown
Also Published As
| Publication number | Publication date |
|---|---|
| CO2019003587A2 (es) | 2019-08-30 |
| EA201990922A1 (ru) | 2019-08-30 |
| BR112019007315A2 (pt) | 2019-09-17 |
| PH12019500793A1 (en) | 2019-12-02 |
| KR20190071741A (ko) | 2019-06-24 |
| EP3526711B1 (en) | 2023-03-29 |
| WO2018068829A1 (en) | 2018-04-19 |
| ES2947521T3 (es) | 2023-08-10 |
| JP2020503580A (ja) | 2020-01-30 |
| ZA201902786B (en) | 2020-11-25 |
| SG11201903177PA (en) | 2019-05-30 |
| US20200051664A1 (en) | 2020-02-13 |
| AU2016426571A1 (en) | 2019-06-06 |
| CA3039690A1 (en) | 2018-04-19 |
| EP3526711A1 (en) | 2019-08-21 |
| MX2019004124A (es) | 2019-06-10 |
| EP4235680A3 (en) | 2023-10-11 |
| PL3526711T3 (pl) | 2023-08-14 |
| CN110168649A (zh) | 2019-08-23 |
| EP4235680A2 (en) | 2023-08-30 |
| EA201990935A1 (ru) | 2019-11-29 |
| HUE062006T2 (hu) | 2023-09-28 |
| IL265906A (en) | 2019-06-30 |
| FI3526711T3 (fi) | 2023-06-27 |
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