EA201990922A1 - Способ и система для избирательного доступа к записанным в память или передаваемым биоинформационным данным - Google Patents

Способ и система для избирательного доступа к записанным в память или передаваемым биоинформационным данным

Info

Publication number
EA201990922A1
EA201990922A1 EA201990922A EA201990922A EA201990922A1 EA 201990922 A1 EA201990922 A1 EA 201990922A1 EA 201990922 A EA201990922 A EA 201990922A EA 201990922 A EA201990922 A EA 201990922A EA 201990922 A1 EA201990922 A1 EA 201990922A1
Authority
EA
Eurasian Patent Office
Prior art keywords
data
selective access
written
transferred
memory
Prior art date
Application number
EA201990922A
Other languages
English (en)
Inventor
Гиоргио Зоиа
Даниэле Рензи
Мохамед Хосо Балуч
Original Assignee
Геномсыс Са
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Геномсыс Са filed Critical Геномсыс Са
Priority claimed from PCT/US2017/017841 external-priority patent/WO2018071054A1/en
Publication of EA201990922A1 publication Critical patent/EA201990922A1/ru

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/50—Compression of genetic data
    • H—ELECTRICITY
    • H04—ELECTRIC COMMUNICATION TECHNIQUE
    • H04N—PICTORIAL COMMUNICATION, e.g. TELEVISION
    • H04N19/00—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals
    • H04N19/10—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals using adaptive coding
    • H04N19/102—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals using adaptive coding characterised by the element, parameter or selection affected or controlled by the adaptive coding
    • H04N19/13—Adaptive entropy coding, e.g. adaptive variable length coding [AVLC] or context adaptive binary arithmetic coding [CABAC]
    • H—ELECTRICITY
    • H04—ELECTRIC COMMUNICATION TECHNIQUE
    • H04N—PICTORIAL COMMUNICATION, e.g. TELEVISION
    • H04N19/00—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals
    • H04N19/90—Methods or arrangements for coding, decoding, compressing or decompressing digital video signals using coding techniques not provided for in groups H04N19/10-H04N19/85, e.g. fractals
    • H04N19/91—Entropy coding, e.g. variable length coding [VLC] or arithmetic coding

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • Analytical Chemistry (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Signal Processing (AREA)
  • Multimedia (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Measurement And Recording Of Electrical Phenomena And Electrical Characteristics Of The Living Body (AREA)
  • Compression, Expansion, Code Conversion, And Decoders (AREA)

Abstract

Сохранение в памяти или передача данных генома осуществляется путем использования структурированного сжатого набора данных генома в виде файла или в форме потока данных генома. Избирательный доступ к данным или к поднаборам данных, соответствующим конкретным областям данных генома, обеспечивается путем использования определяемых пользователем меток, основываясь на классификации данных и на специфическом механизме индексации.
EA201990922A 2016-10-11 2017-02-14 Способ и система для избирательного доступа к записанным в память или передаваемым биоинформационным данным EA201990922A1 (ru)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
PCT/EP2016/074307 WO2018068829A1 (en) 2016-10-11 2016-10-11 Method and apparatus for compact representation of bioinformatics data
PCT/US2017/017841 WO2018071054A1 (en) 2016-10-11 2017-02-14 Method and system for selective access of stored or transmitted bioinformatics data

Publications (1)

Publication Number Publication Date
EA201990922A1 true EA201990922A1 (ru) 2019-08-30

Family

ID=57241050

Family Applications (2)

Application Number Title Priority Date Filing Date
EA201990935A EA201990935A1 (ru) 2016-10-11 2016-10-11 Способ и устройство для компактного представления данных биоинформатики
EA201990922A EA201990922A1 (ru) 2016-10-11 2017-02-14 Способ и система для избирательного доступа к записанным в память или передаваемым биоинформационным данным

Family Applications Before (1)

Application Number Title Priority Date Filing Date
EA201990935A EA201990935A1 (ru) 2016-10-11 2016-10-11 Способ и устройство для компактного представления данных биоинформатики

Country Status (21)

Country Link
US (1) US20200051664A1 (ru)
EP (2) EP4235680A3 (ru)
JP (1) JP2020503580A (ru)
KR (1) KR20190071741A (ru)
CN (1) CN110168649A (ru)
AU (1) AU2016426571A1 (ru)
BR (1) BR112019007315A2 (ru)
CA (1) CA3039690A1 (ru)
CL (1) CL2019000957A1 (ru)
CO (1) CO2019003587A2 (ru)
EA (2) EA201990935A1 (ru)
ES (1) ES2947521T3 (ru)
FI (1) FI3526711T3 (ru)
HU (1) HUE062006T2 (ru)
IL (1) IL265906A (ru)
MX (1) MX2019004124A (ru)
PH (1) PH12019500793A1 (ru)
PL (1) PL3526711T3 (ru)
SG (1) SG11201903177PA (ru)
WO (1) WO2018068829A1 (ru)
ZA (1) ZA201902786B (ru)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
FI4075438T3 (fi) * 2016-10-11 2024-03-14 Genomsys Sa Tehokkaat datarakenteet bioinformatiikkainformaation esittämistä varten
US20210074381A1 (en) 2019-09-11 2021-03-11 Enancio Method for the compression of genome sequence data
EP3896698A1 (en) 2020-04-15 2021-10-20 Genomsys SA Method and system for the efficient data compression in mpeg-g

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2012168815A2 (en) * 2011-06-06 2012-12-13 Koninklijke Philips Electronics N.V. Method for assembly of nucleic acid sequence data
US10902937B2 (en) * 2014-02-12 2021-01-26 International Business Machines Corporation Lossless compression of DNA sequences

Also Published As

Publication number Publication date
BR112019007315A2 (pt) 2019-09-17
SG11201903177PA (en) 2019-05-30
FI3526711T3 (fi) 2023-06-27
EA201990935A1 (ru) 2019-11-29
CO2019003587A2 (es) 2019-08-30
CN110168649A (zh) 2019-08-23
CL2019000957A1 (es) 2019-08-23
MX2019004124A (es) 2019-06-10
EP3526711A1 (en) 2019-08-21
PH12019500793A1 (en) 2019-12-02
KR20190071741A (ko) 2019-06-24
EP3526711B1 (en) 2023-03-29
ES2947521T3 (es) 2023-08-10
JP2020503580A (ja) 2020-01-30
EP4235680A2 (en) 2023-08-30
PL3526711T3 (pl) 2023-08-14
EP4235680A3 (en) 2023-10-11
CA3039690A1 (en) 2018-04-19
IL265906A (en) 2019-06-30
WO2018068829A1 (en) 2018-04-19
AU2016426571A1 (en) 2019-06-06
ZA201902786B (en) 2020-11-25
HUE062006T2 (hu) 2023-09-28
US20200051664A1 (en) 2020-02-13

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