CA3185571A1 - Methods for nomination of nuclease on-/off-target editing locations, designated "ctl-seq" (crispr tag linear-seq) - Google Patents

Methods for nomination of nuclease on-/off-target editing locations, designated "ctl-seq" (crispr tag linear-seq)

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Publication number
CA3185571A1
CA3185571A1 CA3185571A CA3185571A CA3185571A1 CA 3185571 A1 CA3185571 A1 CA 3185571A1 CA 3185571 A CA3185571 A CA 3185571A CA 3185571 A CA3185571 A CA 3185571A CA 3185571 A1 CA3185571 A1 CA 3185571A1
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Canada
Prior art keywords
tag
sequences
seq
primers
sequence
Prior art date
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Pending
Application number
CA3185571A
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English (en)
French (fr)
Inventor
Matthew Mcneill
Rolf TURK
Garrett Rettig
Ellen BLACK
Yongming Sun
Chris SAILOR
Yu Wang
Keith GUNDERSON
Kyle KINNEY
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Integrated DNA Technologies Inc
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Integrated DNA Technologies Inc
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Application filed by Integrated DNA Technologies Inc filed Critical Integrated DNA Technologies Inc
Publication of CA3185571A1 publication Critical patent/CA3185571A1/en
Pending legal-status Critical Current

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    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/111—General methods applicable to biologically active non-coding nucleic acids
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    • C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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    • C12N9/14—Hydrolases (3)
    • C12N9/16—Hydrolases (3) acting on ester bonds (3.1)
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    • C12N9/222—Clustered regularly interspaced short palindromic repeats [CRISPR]-associated [CAS] enzymes
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    • C12Q2521/00—Reaction characterised by the enzymatic activity
    • C12Q2521/30—Phosphoric diester hydrolysing, i.e. nuclease
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    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
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    • C12Q2525/113—Modifications characterised by incorporating modified backbone
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    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
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    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
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    • C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
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    • C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
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    • C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
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CA3185571A 2020-07-23 2021-07-22 Methods for nomination of nuclease on-/off-target editing locations, designated "ctl-seq" (crispr tag linear-seq) Pending CA3185571A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US202063055460P 2020-07-23 2020-07-23
US63/055,460 2020-07-23
PCT/US2021/042733 WO2022020567A2 (en) 2020-07-23 2021-07-22 Methods for nomination of nuclease on-/off-target editing locations, designated "ctl-seq" (crispr tag linear-seq)

Publications (1)

Publication Number Publication Date
CA3185571A1 true CA3185571A1 (en) 2022-01-27

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CA3185571A Pending CA3185571A1 (en) 2020-07-23 2021-07-22 Methods for nomination of nuclease on-/off-target editing locations, designated "ctl-seq" (crispr tag linear-seq)

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US (2) US20220025365A1 (enExample)
EP (1) EP4185708A2 (enExample)
JP (2) JP2023535407A (enExample)
KR (1) KR20230040370A (enExample)
CN (1) CN116194593A (enExample)
AU (1) AU2021311713A1 (enExample)
CA (1) CA3185571A1 (enExample)
WO (1) WO2022020567A2 (enExample)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB202013141D0 (en) 2020-08-21 2020-10-07 Univ College Cardiff Consultants Ltd A screening method for the detection of DNA damage
WO2025151661A1 (en) * 2024-01-10 2025-07-17 Sequre Dx, Inc. Methods for single-ended oligonucleotide enrichment and sequencing
US20260049352A1 (en) 2024-08-14 2026-02-19 Integrated Dna Technologies, Inc. Adaptered-tag blocking oligonucleotides

Family Cites Families (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9809904B2 (en) * 2011-04-21 2017-11-07 University Of Washington Through Its Center For Commercialization Methods for retrieval of sequence-verified DNA constructs
CN105531375B (zh) * 2012-12-10 2020-03-03 分析生物科学有限公司 靶向基因组分析的方法
AU2013381709A1 (en) * 2013-03-15 2015-10-01 Integrated Dna Technologies, Inc. RNase H-based assays utilizing modified RNA monomers
AU2015280069B2 (en) * 2014-06-23 2021-08-12 The General Hospital Corporation Genomewide unbiased identification of dsbs evaluated by sequencing (guide-seq)
WO2016030899A1 (en) * 2014-08-28 2016-03-03 Yeda Research And Development Co. Ltd. Methods of treating amyotrophic lateral scleroses
WO2016081798A1 (en) * 2014-11-20 2016-05-26 Children's Medical Center Corporation Methods relating to the detection of recurrent and non-specific double strand breaks in the genome
CN118638898A (zh) * 2017-03-23 2024-09-13 华盛顿大学 用于靶向核酸序列富集的方法及在错误纠正的核酸测序中的应用
KR20250047324A (ko) * 2017-08-07 2025-04-03 더 존스 홉킨스 유니버시티 암을 평가하고 치료하기 위한 방법 및 재료
WO2019110067A1 (en) * 2017-12-07 2019-06-13 Aarhus Universitet Hybrid nanoparticle

Also Published As

Publication number Publication date
WO2022020567A3 (en) 2022-03-10
JP2026048971A (ja) 2026-03-17
EP4185708A2 (en) 2023-05-31
US20220025365A1 (en) 2022-01-27
AU2021311713A1 (en) 2023-03-09
CN116194593A (zh) 2023-05-30
US20250257352A1 (en) 2025-08-14
WO2022020567A2 (en) 2022-01-27
KR20230040370A (ko) 2023-03-22
JP2023535407A (ja) 2023-08-17

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