CA3066745A1 - A method for the clustering of dna sequences - Google Patents

A method for the clustering of dna sequences Download PDF

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Publication number
CA3066745A1
CA3066745A1 CA3066745A CA3066745A CA3066745A1 CA 3066745 A1 CA3066745 A1 CA 3066745A1 CA 3066745 A CA3066745 A CA 3066745A CA 3066745 A CA3066745 A CA 3066745A CA 3066745 A1 CA3066745 A1 CA 3066745A1
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CA
Canada
Prior art keywords
nucleic acids
nucleic acid
cross
junctions
cell
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CA3066745A
Other languages
English (en)
French (fr)
Inventor
Ivan LIACHKO
Shawn Thomas Sullivan
Kyle LANGFORD
Stephen M. EACKER
Original Assignee
Phase Genomics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Phase Genomics Inc filed Critical Phase Genomics Inc
Publication of CA3066745A1 publication Critical patent/CA3066745A1/en
Pending legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1093—General methods of preparing gene libraries, not provided for in other subgroups
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • General Health & Medical Sciences (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • Biomedical Technology (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
CA3066745A 2017-06-26 2018-06-26 A method for the clustering of dna sequences Pending CA3066745A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201762524815P 2017-06-26 2017-06-26
US62/524,815 2017-06-26
PCT/US2018/039454 WO2019005763A1 (en) 2017-06-26 2018-06-26 METHOD FOR REGROUPING DNA SEQUENCES

Publications (1)

Publication Number Publication Date
CA3066745A1 true CA3066745A1 (en) 2019-01-03

Family

ID=64742178

Family Applications (1)

Application Number Title Priority Date Filing Date
CA3066745A Pending CA3066745A1 (en) 2017-06-26 2018-06-26 A method for the clustering of dna sequences

Country Status (5)

Country Link
US (2) US11753637B2 (https=)
EP (1) EP3645547A4 (https=)
JP (2) JP7277058B2 (https=)
CA (1) CA3066745A1 (https=)
WO (1) WO2019005763A1 (https=)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20220403371A1 (en) * 2019-11-15 2022-12-22 Phase Genomics, Inc. Chromosome conformation capture from tissue samples
CN116323973A (zh) * 2020-08-06 2023-06-23 上海绾塍生物科技有限公司 一种分析经固定的细胞的组分的方法

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Also Published As

Publication number Publication date
EP3645547A4 (en) 2021-04-21
JP2023065620A (ja) 2023-05-12
WO2019005763A1 (en) 2019-01-03
JP2020525046A (ja) 2020-08-27
EP3645547A1 (en) 2020-05-06
JP7277058B2 (ja) 2023-05-18
US11753637B2 (en) 2023-09-12
US20240060066A1 (en) 2024-02-22
US20200140943A1 (en) 2020-05-07

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