CA3065384A1 - Creation et utilisation d'acides nucleiques guides - Google Patents

Creation et utilisation d'acides nucleiques guides Download PDF

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Publication number
CA3065384A1
CA3065384A1 CA3065384A CA3065384A CA3065384A1 CA 3065384 A1 CA3065384 A1 CA 3065384A1 CA 3065384 A CA3065384 A CA 3065384A CA 3065384 A CA3065384 A CA 3065384A CA 3065384 A1 CA3065384 A1 CA 3065384A1
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Canada
Prior art keywords
dna
sequence
site
adapter
nucleic acids
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Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
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CA3065384A
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English (en)
Inventor
Stephane B. Gourguechon
Meredith L. CARPENTER
Morten Rasmussen
Srihari RADHAKRISHNAN
Anna Katharina ELMER
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
ARC Bio LLC
Original Assignee
Gourguechon Stephane B
Radhakrishnan Srihari
ARC Bio LLC
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Application filed by Gourguechon Stephane B, Radhakrishnan Srihari, ARC Bio LLC filed Critical Gourguechon Stephane B
Publication of CA3065384A1 publication Critical patent/CA3065384A1/fr
Pending legal-status Critical Current

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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1068Template (nucleic acid) mediated chemical library synthesis, e.g. chemical and enzymatical DNA-templated organic molecule synthesis, libraries prepared by non ribosomal polypeptide synthesis [NRPS], DNA/RNA-polymerase mediated polypeptide synthesis
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1093General methods of preparing gene libraries, not provided for in other subgroups
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1096Processes for the isolation, preparation or purification of DNA or RNA cDNA Synthesis; Subtracted cDNA library construction, e.g. RT, RT-PCR
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • C12N9/22Ribonucleases RNAses, DNAses
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N2310/00Structure or type of the nucleic acid
    • C12N2310/10Type of nucleic acid
    • C12N2310/20Type of nucleic acid involving clustered regularly interspaced short palindromic repeats [CRISPRs]
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N2320/00Applications; Uses
    • C12N2320/10Applications; Uses in screening processes
    • C12N2320/12Applications; Uses in screening processes in functional genomics, i.e. for the determination of gene function
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N2330/00Production
    • C12N2330/30Production chemically synthesised
    • C12N2330/31Libraries, arrays
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2800/00Nucleic acids vectors
    • C12N2800/80Vectors containing sites for inducing double-stranded breaks, e.g. meganuclease restriction sites

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  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Biomedical Technology (AREA)
  • Zoology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Organic Chemistry (AREA)
  • Wood Science & Technology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • General Health & Medical Sciences (AREA)
  • Plant Pathology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Medicinal Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)

Abstract

L'invention concerne des procédés et des compositions pour fabriquer des acides nucléiques guides (ANg), des acides nucléiques codant pour des ANg, des collections d'ANg et des acides nucléiques codant pour une collection d'ANg à partir de n'importe quel acide nucléique source. L'invention concerne également des procédés et des compositions pour utiliser lesdits ANg, lesdits acides nucléiques codant pour des ANg, lesdites collections d'ANg et lesdits acides nucléiques codant pour une collection d'ANg dans diverses applications.
CA3065384A 2017-06-07 2018-06-07 Creation et utilisation d'acides nucleiques guides Pending CA3065384A1 (fr)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US201762516619P 2017-06-07 2017-06-07
US62/516,619 2017-06-07
US201762548036P 2017-08-21 2017-08-21
US62/548,036 2017-08-21
PCT/US2018/036563 WO2018227025A1 (fr) 2017-06-07 2018-06-07 Création et utilisation d'acides nucléiques guides

Publications (1)

Publication Number Publication Date
CA3065384A1 true CA3065384A1 (fr) 2018-12-13

Family

ID=64566018

Family Applications (1)

Application Number Title Priority Date Filing Date
CA3065384A Pending CA3065384A1 (fr) 2017-06-07 2018-06-07 Creation et utilisation d'acides nucleiques guides

Country Status (7)

Country Link
US (1) US20200190508A1 (fr)
EP (1) EP3635114A4 (fr)
JP (1) JP7282692B2 (fr)
CN (1) CN111094565B (fr)
AU (1) AU2018279112A1 (fr)
CA (1) CA3065384A1 (fr)
WO (1) WO2018227025A1 (fr)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN109310784B (zh) 2015-12-07 2022-08-19 阿克生物公司 用于制备和使用指导核酸的方法和组合物
EP4296373A3 (fr) 2018-10-04 2024-01-24 Arc Bio, LLC Commandes de normalisation pour gérer de faibles entrées d'échantillon dans le séquençage de nouvelle génération
EP3953471A4 (fr) * 2019-04-09 2023-02-01 Arc Bio, LLC Compositions et méthodes de déplétion basée sur une modification nucléotidique
WO2021142197A1 (fr) * 2020-01-09 2021-07-15 Duke University Compositions et méthodes de synthèse d'adn activé par crispr
AU2021246531A1 (en) * 2020-04-02 2022-11-24 Altius Institute For Biomedical Sciences Methods, compositions, and kits for identifying regions of genomic DNA bound to a protein
WO2021257453A2 (fr) * 2020-06-15 2021-12-23 The Broad Institute, Inc. Séquençage de réseau d'amplicons chimériques
WO2022148450A1 (fr) * 2021-01-08 2022-07-14 Wuhan University Compositions et procédés de détection d'acide nucléique instantanée
CN113462755B (zh) * 2021-05-06 2023-03-21 中国人民解放军陆军军医大学第一附属医院 一种用于短链非编码rna检测的模块化酶电路检测系统
CN114293264A (zh) * 2021-12-21 2022-04-08 翌圣生物科技(上海)股份有限公司 酶法靶序列随机sgRNA文库的制备方法
WO2023158739A2 (fr) * 2022-02-17 2023-08-24 Claret Bioscience, Llc Procédés et compositions d'analyse d'acide nucléique

Family Cites Families (23)

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US20050233340A1 (en) 2004-04-20 2005-10-20 Barrett Michael T Methods and compositions for assessing CpG methylation
US8183359B2 (en) * 2007-03-01 2012-05-22 Gen-Probe Incorporated Kits for amplifying DNA
US8323930B2 (en) * 2007-07-28 2012-12-04 Dna Twopointo, Inc. Methods, compositions and kits for one-step DNA cloning using DNA topoisomerase
US8029993B2 (en) * 2008-04-30 2011-10-04 Population Genetics Technologies Ltd. Asymmetric adapter library construction
CA2879018A1 (fr) * 2012-07-13 2014-01-16 X-Chem, Inc. Banques encodees par l'adn possedant des liaisons oligonucleotidiques codantes ne pouvant etre lues par les polymerases
SG10201912327SA (en) * 2012-12-12 2020-02-27 Broad Inst Inc Engineering and Optimization of Improved Systems, Methods and Enzyme Compositions for Sequence Manipulation
WO2014165549A1 (fr) * 2013-04-01 2014-10-09 University Of Florida Research Foundation, Incorporated Détermination de l'état de méthylation et de la structure chromatinienne de loci génétiques cibles
CA2913236A1 (fr) * 2013-06-07 2014-12-11 Keygene N.V. Methode de sequencage cible
CN105637097A (zh) * 2013-08-05 2016-06-01 特韦斯特生物科学公司 从头合成的基因文库
WO2015050919A1 (fr) * 2013-10-01 2015-04-09 Life Technologies Corporation Systèmes et procédés permettant de détecter des variants structuraux
WO2016054032A1 (fr) * 2014-09-29 2016-04-07 The Jackson Laboratory Génération extrêmement efficace et à rendement élevé de mammifères génétiquement modifiés par électroporation
AU2015346514B2 (en) * 2014-11-11 2021-04-08 Illumina, Inc. Polynucleotide amplification using CRISPR-Cas systems
JP6947638B2 (ja) * 2014-12-20 2021-10-13 アーク バイオ, エルエルシー Crispr/cas系タンパク質を使用する核酸の標的化枯渇、富化および分割のための組成物および方法
ES2955957T3 (es) * 2015-01-28 2023-12-11 Caribou Biosciences Inc Polinucleótidos de ADN/ARN híbridos CRISPR y procedimientos de uso
WO2016130697A1 (fr) * 2015-02-11 2016-08-18 Memorial Sloan Kettering Cancer Center Méthodes et kits pour générer des vecteurs qui coexpriment de multiples molécules cibles
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CN109310784B (zh) * 2015-12-07 2022-08-19 阿克生物公司 用于制备和使用指导核酸的方法和组合物
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Also Published As

Publication number Publication date
AU2018279112A1 (en) 2019-12-19
JP7282692B2 (ja) 2023-05-29
EP3635114A4 (fr) 2021-03-17
WO2018227025A1 (fr) 2018-12-13
CN111094565B (zh) 2024-02-06
CN111094565A (zh) 2020-05-01
US20200190508A1 (en) 2020-06-18
JP2020524491A (ja) 2020-08-20
EP3635114A1 (fr) 2020-04-15

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