CA2778449C - Amplification primers with non-standard bases for increased reaction specificity - Google Patents

Amplification primers with non-standard bases for increased reaction specificity Download PDF

Info

Publication number
CA2778449C
CA2778449C CA2778449A CA2778449A CA2778449C CA 2778449 C CA2778449 C CA 2778449C CA 2778449 A CA2778449 A CA 2778449A CA 2778449 A CA2778449 A CA 2778449A CA 2778449 C CA2778449 C CA 2778449C
Authority
CA
Canada
Prior art keywords
primer
iso
amplification
segment
pcr
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CA2778449A
Other languages
English (en)
French (fr)
Other versions
CA2778449A1 (en
Inventor
Scott Johnson
T.S. Ramasubramanian
Kathleen Engelbrecht
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Luminex Corp
Original Assignee
Luminex Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Luminex Corp filed Critical Luminex Corp
Publication of CA2778449A1 publication Critical patent/CA2778449A1/en
Application granted granted Critical
Publication of CA2778449C publication Critical patent/CA2778449C/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P19/00—Preparation of compounds containing saccharide radicals
    • C12P19/26—Preparation of nitrogen-containing carbohydrates
    • C12P19/28—N-glycosides
    • C12P19/30—Nucleotides
    • C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • General Chemical & Material Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA2778449A 2009-10-23 2010-10-22 Amplification primers with non-standard bases for increased reaction specificity Active CA2778449C (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US25428109P 2009-10-23 2009-10-23
US61/254,281 2009-10-23
PCT/US2010/053773 WO2011050278A1 (en) 2009-10-23 2010-10-22 Amplification primers with non-standard bases for increased reaction specificity

Publications (2)

Publication Number Publication Date
CA2778449A1 CA2778449A1 (en) 2011-04-28
CA2778449C true CA2778449C (en) 2017-06-20

Family

ID=43898754

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2778449A Active CA2778449C (en) 2009-10-23 2010-10-22 Amplification primers with non-standard bases for increased reaction specificity

Country Status (6)

Country Link
US (1) US8440406B2 (cg-RX-API-DMAC10.html)
EP (1) EP2491146B1 (cg-RX-API-DMAC10.html)
JP (1) JP5938348B2 (cg-RX-API-DMAC10.html)
CN (1) CN102639712A (cg-RX-API-DMAC10.html)
CA (1) CA2778449C (cg-RX-API-DMAC10.html)
WO (1) WO2011050278A1 (cg-RX-API-DMAC10.html)

Families Citing this family (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP2140033B1 (en) 2007-03-28 2012-10-10 Signal Diagnostics System and method for high resolution analysis of nucleic acids to detect sequence variations
US10669574B2 (en) 2008-11-18 2020-06-02 XCR Diagnostics, Inc. DNA amplification technology
JP6544861B2 (ja) 2013-02-07 2019-07-17 ラトガース,ザ ステート ユニバーシティ オブ ニュー ジャージー 高い選択性の核酸増幅プライマー
JP6479759B2 (ja) * 2013-03-14 2019-03-06 アーノルド, ライル, ジェイ.ARNOLD, Lyle, J. 固体支持体上での核酸増幅方法
EP4697022A3 (en) 2013-08-09 2026-06-03 Luminex Corporation Probes for improved melt discrimination and multiplexing in nucleic acid assays
AU2014331828B2 (en) 2013-10-09 2020-05-14 Fluoresentric, Inc. Multiplex probes
CN106687589B (zh) * 2014-07-10 2021-05-07 弗洛雷森特里克公司 Dna扩增技术
WO2016011280A1 (en) * 2014-07-16 2016-01-21 Tangen Biosciences, Inc. Isothermal methods for amplifying nucleic acid samples
EP3180449B1 (en) 2014-08-11 2019-10-09 Luminex Corporation Probes for improved melt discrimination and multiplexing in nucleic acid assays
US11559801B2 (en) 2014-11-03 2023-01-24 Tangen Biosciences, Inc. Apparatus and method for cell, spore, or virus capture and disruption
RS60032B1 (sr) * 2015-05-18 2020-04-30 Saga Diagnostics Ab Detekcija ciljne nukleinske kiseline i varijanti
CN109234456B (zh) * 2018-10-23 2023-06-09 深圳市亿立方生物技术有限公司 一种可同时检测6种呼吸道病原体的试剂盒及其应用
EP4665870A1 (en) 2023-02-16 2025-12-24 Asecud SA High nucleic acid sequence discrimination using a multifaceted nucleic acid molecule
WO2025023659A1 (ko) 2023-07-25 2025-01-30 주식회사 씨젠 타겟 핵산 서열에 대한 올리고뉴클레오타이드 서열의 얼라인먼트 정보를 제공하는 컴퓨터-구현 방법

Family Cites Families (50)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4458066A (en) 1980-02-29 1984-07-03 University Patents, Inc. Process for preparing polynucleotides
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4996143A (en) 1985-12-23 1991-02-26 Syngene, Inc. Fluorescent stokes shift probes for polynucleotide hybridization
US4800159A (en) 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
GB8827160D0 (en) 1988-11-21 1988-12-29 Apothekernes Lab Detection & quantitative determination of rna & dna
GB8902689D0 (en) 1989-02-07 1989-03-30 Ici Plc Assay method
US5856092A (en) 1989-02-13 1999-01-05 Geneco Pty Ltd Detection of a nucleic acid sequence or a change therein
NZ235032A (en) 1989-08-31 1993-04-28 Dow Chemical Co Constrained geometry complexes of titanium, zirconium or hafnium comprising a substituted cyclopentadiene ligand; use as olefin polymerisation catalyst component
GB8920097D0 (en) 1989-09-06 1989-10-18 Ici Plc Amplification processes
US6007984A (en) 1989-11-01 1999-12-28 Zeneca Limited Detection of DNA/RNA by fluorescence polarization
US5210015A (en) 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
US5965364A (en) 1990-10-09 1999-10-12 Benner; Steven Albert Method for selecting functional deoxyribonucleotide derivatives
US6037120A (en) 1995-10-12 2000-03-14 Benner; Steven Albert Recognition of oligonucleotides containing non-standard base pairs
US5432272A (en) 1990-10-09 1995-07-11 Benner; Steven A. Method for incorporating into a DNA or RNA oligonucleotide using nucleotides bearing heterocyclic bases
US6140496A (en) 1990-10-09 2000-10-31 Benner; Steven Albert Precursors for deoxyribonucleotides containing non-standard nucleosides
DE4129653A1 (de) 1991-09-06 1993-03-11 Boehringer Mannheim Gmbh Verfahren zum nachweis aehnlicher nukleinsaeuren
US5846717A (en) 1996-01-24 1998-12-08 Third Wave Technologies, Inc. Detection of nucleic acid sequences by invader-directed cleavage
US20020150990A1 (en) * 1992-02-28 2002-10-17 Ian Pike Hepatitis C virus peptides
AU3933393A (en) 1993-03-17 1994-10-11 City Of Hope Nucleic acid sequences having single stranded ends
US6077668A (en) 1993-04-15 2000-06-20 University Of Rochester Highly sensitive multimeric nucleic acid probes
US6156501A (en) 1993-10-26 2000-12-05 Affymetrix, Inc. Arrays of modified nucleic acid probes and methods of use
WO1995021271A1 (en) 1994-02-07 1995-08-10 Molecular Tool, Inc. Ligase/polymerase-mediated genetic bit analysistm of single nucleotide polymorphisms and its use in genetic analysis
US5681702A (en) 1994-08-30 1997-10-28 Chiron Corporation Reduction of nonspecific hybridization by using novel base-pairing schemes
US5604097A (en) 1994-10-13 1997-02-18 Spectragen, Inc. Methods for sorting polynucleotides using oligonucleotide tags
GB9507238D0 (en) 1995-04-07 1995-05-31 Isis Innovation Detecting dna sequence variations
US5736330A (en) 1995-10-11 1998-04-07 Luminex Corporation Method and compositions for flow cytometric determination of DNA sequences
AU2320597A (en) 1996-03-19 1997-10-10 Molecular Tool, Inc. Method for determining the nucleotide sequence of a polynucleotide
US5780233A (en) 1996-06-06 1998-07-14 Wisconsin Alumni Research Foundation Artificial mismatch hybridization
US5866336A (en) 1996-07-16 1999-02-02 Oncor, Inc. Nucleic acid amplification oligonucleotides with molecular energy transfer labels and methods based thereon
US6124092A (en) 1996-10-04 2000-09-26 The Perkin-Elmer Corporation Multiplex polynucleotide capture methods and compositions
US5912147A (en) * 1996-10-22 1999-06-15 Health Research, Inc. Rapid means of quantitating genomic instability
JP4185185B2 (ja) 1997-05-08 2008-11-26 征夫 軽部 部分二重鎖dnaを利用したdnaの検出方法
US5928869A (en) 1997-05-30 1999-07-27 Becton, Dickinson And Company Detection of nucleic acids by fluorescence quenching
WO1999022029A1 (en) 1997-10-28 1999-05-06 The Regents Of The University Of California Dna base mismatch detection using flow cytometry
GB9725197D0 (en) 1997-11-29 1998-01-28 Secr Defence Detection system
WO1999058958A1 (en) 1998-05-14 1999-11-18 Luminex Corporation Diode laser based measurement apparatus
US7060431B2 (en) 1998-06-24 2006-06-13 Illumina, Inc. Method of making and decoding of array sensors with microspheres
US6528254B1 (en) 1999-10-29 2003-03-04 Stratagene Methods for detection of a target nucleic acid sequence
AU7125401A (en) 2000-05-19 2001-12-03 David J Marshall Materials and methods for detection of nucleic acids
US6511809B2 (en) 2000-06-13 2003-01-28 E. I. Du Pont De Nemours And Company Method for the detection of an analyte by means of a nucleic acid reporter
DE60137649D1 (de) 2000-10-14 2009-03-26 Eragen Biosciences Inc Nachweissysteme auf festen trägern und methoden zur verwendung von nicht-standardbasen
US20030175749A1 (en) 2001-12-08 2003-09-18 Jong-Yoon Chun Annealing control primer and its uses
US20030194705A1 (en) 2002-03-01 2003-10-16 Schroth Gary P. Methods of using unnatural nucleobases for decoding
US20040157238A1 (en) * 2002-09-20 2004-08-12 Quinn John J. Method for detection of multiple nucleic acid sequence variations
US7514212B2 (en) * 2003-01-17 2009-04-07 Eragen Biosciences, Inc. Nucleic acid amplification using non-standard bases
WO2005045073A1 (en) 2003-11-10 2005-05-19 Seegene, Inc. Method for amplifying unknown dna sequence adjacent to known sequence
US20070264694A1 (en) * 2006-04-07 2007-11-15 Eragen Biosciences, Inc. Use of non-standard bases and proximity effects for gene assembly and conversion of non-standard bases to standard bases during dna synthesis
WO2008005675A2 (en) * 2006-06-30 2008-01-10 Applera Corporation Emulsion pcr and amplicon capture
WO2009154733A2 (en) * 2008-06-17 2009-12-23 Steven Albert Benner Polymerase incorporation of non-standard nucleotides

Also Published As

Publication number Publication date
CN102639712A (zh) 2012-08-15
JP5938348B2 (ja) 2016-06-22
US20110097764A1 (en) 2011-04-28
CA2778449A1 (en) 2011-04-28
JP2013507971A (ja) 2013-03-07
WO2011050278A1 (en) 2011-04-28
EP2491146A4 (en) 2013-05-01
US8440406B2 (en) 2013-05-14
EP2491146A1 (en) 2012-08-29
EP2491146B1 (en) 2017-09-20

Similar Documents

Publication Publication Date Title
US8440406B2 (en) Amplification primers with non-standard bases for increased reaction specificity
US20230099446A1 (en) Fast pcr for str genotyping
EP2365078B1 (en) Processes using dual specificity oligonucleotide and dual specificity oligonucleotide
WO2004099439A1 (en) Methods and compositions for optimizing multiplex pcr primers
US20030104395A1 (en) Method of reducing non-specific amplification in PCR
EP2103693B1 (en) Nucleic acid amplification in the presence of modified randomers
WO2020092134A1 (en) Exponential base-3 nucleic acid amplification with reduced amplification time using nested overlapping primers
EP3283630B1 (en) Oligonucleotide fragment, and method as well as application of selective amplifiction of variant of target nucleic acid sequence using the same
EP2459747A1 (en) Method of normalized quantification of nucleic acids using anchor oligonucleotides and adapter oligonucleotides
EP2389454A1 (en) Method for enrichment of selected rna molecules
CA2847943C (en) Use of g-clamp for improved allele-specific pcr
WO2022121754A1 (zh) 一种检测一种或多种聚合酶活性的方法
CA2678229C (en) Polyanion for improved nucleic acid amplification
KR102106040B1 (ko) 자가혈당측정기를 활용한 표적핵산 검출방법
US7501254B2 (en) Methods and compositions for amplification and capture of nucleic acid sequences
US7344834B2 (en) Method for DNA amplification using DNA blocking probes
US20070122827A1 (en) Target nucleic acid signal detection

Legal Events

Date Code Title Description
EEER Examination request

Effective date: 20150424

H11 Ip right ceased following rejected request for revival

Free format text: ST27 STATUS EVENT CODE: T-6-6-H10-H11-H101 (AS PROVIDED BY THE NATIONAL OFFICE); EVENT TEXT: TIME LIMIT FOR REVERSAL EXPIRED

Effective date: 20250423