CA2731991C - Procedes pour une classification d'allele et une classification de ploidie - Google Patents

Procedes pour une classification d'allele et une classification de ploidie Download PDF

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Publication number
CA2731991C
CA2731991C CA2731991A CA2731991A CA2731991C CA 2731991 C CA2731991 C CA 2731991C CA 2731991 A CA2731991 A CA 2731991A CA 2731991 A CA2731991 A CA 2731991A CA 2731991 C CA2731991 C CA 2731991C
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Prior art keywords
chromosome
data
genetic data
hypothesis
genetic
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CA2731991A
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CA2731991A1 (fr
Inventor
Matthew Rabinowitz
George Gemelos
Milena Banjevic
Allison Ryan
Joshua Sweetkind-Singer
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Natera Inc
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Natera Inc
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Priority to CA3116156A priority Critical patent/CA3116156C/fr
Publication of CA2731991A1 publication Critical patent/CA2731991A1/fr
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    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/10—Ploidy or copy number detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding

Abstract

L'invention concerne un système et un procédé pour fabriquer des classifications d'allèle, et pour déterminer l'état de ploïdie, dans une cellule ou un petit ensemble de cellules, ou là où une quantité limitée de données génétiques est disponible. Des paires de base mesurées faiblement ou de manière incorrecte d'allèles manquants et de zones manquantes sont reconstruites, et les haplotypes sont déterminés en utilisant des similitudes attendues entre le génome cible et la connaissance des génomes d'individus génétiquement en rapport. Selon un mode de réalisation, des données génétiques incomplètes provenant d'une cellule embryonnaire sont reconstruites au niveau d'une pluralité de lieux en utilisant les données génétiques des deux parents, et éventuellement un ou plusieurs éléments parmi du sperme et/ou des embryons de fratrie. Dans un autre mode de réalisation, le nombre de copies de chromosome peut être déterminé en utilisant les mêmes données d'entrée. Dans un autre mode de réalisation, ces déterminations sont réalisées à partir d'une sélection d'embryons pendant une fécondation in vitro (FIV), pour un diagnostic prénatal non invasif, ou pour réaliser des prédictions de phénotype.
CA2731991A 2008-08-04 2009-08-04 Procedes pour une classification d'allele et une classification de ploidie Active CA2731991C (fr)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CA3116156A CA3116156C (fr) 2008-08-04 2009-08-04 Procedes pour une classification d'allele et une classification de ploidie

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US13785108P 2008-08-04 2008-08-04
US61/137,851 2008-08-04
US18834308P 2008-08-08 2008-08-08
US61/188,343 2008-08-08
US19485408P 2008-10-01 2008-10-01
US61/194,854 2008-10-01
US19869008P 2008-11-07 2008-11-07
US61/198,690 2008-11-07
PCT/US2009/052730 WO2010017214A1 (fr) 2008-08-04 2009-08-04 Procédés pour une classification d'allèle et une classification de ploïdie

Related Child Applications (1)

Application Number Title Priority Date Filing Date
CA3116156A Division CA3116156C (fr) 2008-08-04 2009-08-04 Procedes pour une classification d'allele et une classification de ploidie

Publications (2)

Publication Number Publication Date
CA2731991A1 CA2731991A1 (fr) 2010-02-11
CA2731991C true CA2731991C (fr) 2021-06-08

Family

ID=41663955

Family Applications (2)

Application Number Title Priority Date Filing Date
CA3116156A Active CA3116156C (fr) 2008-08-04 2009-08-04 Procedes pour une classification d'allele et une classification de ploidie
CA2731991A Active CA2731991C (fr) 2008-08-04 2009-08-04 Procedes pour une classification d'allele et une classification de ploidie

Family Applications Before (1)

Application Number Title Priority Date Filing Date
CA3116156A Active CA3116156C (fr) 2008-08-04 2009-08-04 Procedes pour une classification d'allele et une classification de ploidie

Country Status (8)

Country Link
US (2) US20110178719A1 (fr)
EP (1) EP2321642B1 (fr)
CN (2) CN102171565B (fr)
AU (2) AU2009279734A1 (fr)
CA (2) CA3116156C (fr)
ES (1) ES2620431T3 (fr)
HK (1) HK1159248A1 (fr)
WO (1) WO2010017214A1 (fr)

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US20110178719A1 (en) 2011-07-21
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