CA2693438A1 - Nucleic acid sequences and combination thereof for sensitive amplification and detection of bacterial and fungal sepsis pathogens - Google Patents

Nucleic acid sequences and combination thereof for sensitive amplification and detection of bacterial and fungal sepsis pathogens Download PDF

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Publication number
CA2693438A1
CA2693438A1 CA2693438A CA2693438A CA2693438A1 CA 2693438 A1 CA2693438 A1 CA 2693438A1 CA 2693438 A CA2693438 A CA 2693438A CA 2693438 A CA2693438 A CA 2693438A CA 2693438 A1 CA2693438 A1 CA 2693438A1
Authority
CA
Canada
Prior art keywords
seq
oligonucleotide
deletion
nucleic acid
streptococcus
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA2693438A
Other languages
English (en)
French (fr)
Inventor
Michel G. Bergeron
Maurice Boissinot
Dominique Boudreau
Richard Giroux
Ann Huletsky
Isabelle Martineau
Catherine Ouellet
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Université Laval
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Publication of CA2693438A1 publication Critical patent/CA2693438A1/en
Abandoned legal-status Critical Current

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/16—Primer sets for multiplex assays

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CA2693438A 2007-07-11 2008-07-11 Nucleic acid sequences and combination thereof for sensitive amplification and detection of bacterial and fungal sepsis pathogens Abandoned CA2693438A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US92974907P 2007-07-11 2007-07-11
US60/929,749 2007-07-11
PCT/CA2008/001298 WO2009006743A1 (en) 2007-07-11 2008-07-11 Nucleic acid sequences and combination thereof for sensitive amplification and detection of bacterial and fungal sepsis pathogens

Publications (1)

Publication Number Publication Date
CA2693438A1 true CA2693438A1 (en) 2009-01-15

Family

ID=40228145

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2693438A Abandoned CA2693438A1 (en) 2007-07-11 2008-07-11 Nucleic acid sequences and combination thereof for sensitive amplification and detection of bacterial and fungal sepsis pathogens

Country Status (6)

Country Link
US (1) US20110151453A1 (enExample)
EP (1) EP2176281A4 (enExample)
JP (1) JP2010532665A (enExample)
AU (1) AU2008274856A1 (enExample)
CA (1) CA2693438A1 (enExample)
WO (1) WO2009006743A1 (enExample)

Families Citing this family (23)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102031297B (zh) * 2010-08-18 2013-01-30 李国辉 一种检测乳酒念珠菌的dna探针、基因芯片及其应用
CN102230015B (zh) * 2011-06-21 2013-05-01 北京出入境检验检疫局检验检疫技术中心 检测洋葱腐烂病菌的核苷酸序列和试剂盒
RU2510856C2 (ru) * 2012-02-24 2014-04-10 Закрытое акционерное общество "Научно-производственная фирма ДНК-Технология" НАБОР СИНТЕТИЧЕСКИХ ОЛИГОНУКЛЕОТИДОВ ДЛЯ ВЫЯВЛЕНИЯ ДНК ПАРОДОНТОПАТОГЕННОГО МИКРООРГАНИЗМА Candida albicans МЕТОДОМ ПОЛИМЕРАЗНОЙ ЦЕПНОЙ РЕАКЦИИ
CN105659091A (zh) 2013-08-19 2016-06-08 卓异生物公司 用于单分子检测的测定及其应用
US10253376B2 (en) * 2013-10-16 2019-04-09 Wisconsin Alumni Research Foundation DNA-based detection and identification of eight mastitis pathogens
US10260111B1 (en) * 2014-01-20 2019-04-16 Brett Eric Etchebarne Method of detecting sepsis-related microorganisms and detecting antibiotic-resistant sepsis-related microorganisms in a fluid sample
WO2016134191A1 (en) 2015-02-18 2016-08-25 Singular Bio, Inc. Assays for single molecule detection and use thereof
JP6834164B2 (ja) * 2016-03-29 2021-02-24 東洋紡株式会社 Ｐｃｒ反応溶液の検出感度を維持する方法
CN106434890B (zh) * 2016-08-30 2020-02-21 上海生物信息技术研究中心 快速恒温检测小肠结肠炎耶尔森氏菌的方法、引物及试剂盒
CN106701994A (zh) * 2017-02-20 2017-05-24 中国水产科学研究院淡水渔业研究中心 同步检测肺炎克雷伯氏菌和豚鼠气单胞菌的双重pcr引物及其检测方法
US20190062809A1 (en) 2017-08-24 2019-02-28 Clinical Micro Sensors, Inc. (dba GenMark Diagnostics, Inc.) Electrochemical detection of bacterial and/or fungal infections
EP3673086B1 (en) 2017-08-24 2025-04-09 Roche Diagnostics GmbH Electrochemical detection of bacterial and/or fungal infections
JP2021502825A (ja) * 2017-11-13 2021-02-04 ライフ テクノロジーズ コーポレイション 尿路微生物検出のための組成物、方法、およびキット
CN108913792A (zh) * 2018-08-03 2018-11-30 暨南大学 基于数字pcr技术检测猪链球菌的引物和探针及其试剂盒与方法
WO2020106158A1 (en) * 2018-11-20 2020-05-28 Acd Pharmaceuticals As Serratia liquefaciens variant
TWI716083B (zh) * 2018-12-28 2021-01-11 國立成功大學 敗血症的菌種預測系統與方法
PH12022550137A1 (en) * 2019-07-19 2024-02-12 Safeguard Biosystems Holdings Ltd Detection of genomic sequences using combinations of probes, probe molecules and arrays comprising the probes for the specific detection of organisms
FR3106834B1 (fr) * 2020-01-30 2024-11-29 Ocean Diagnostics Nouveau procédé de PCR multiplexe et utilisation
CN112626263B (zh) * 2021-01-20 2022-08-05 中国人民解放军总医院 酶切探针恒温检测呼吸道感染真菌病原体的试剂盒
AU2022211181A1 (en) * 2021-01-20 2023-07-13 Safeguard Biosystems Holdings Ltd Improved detection of genomic sequences and probe molecules therefor
CN116745434A (zh) * 2021-01-20 2023-09-12 保障生物系统控股有限公司 基因组序列的改进的检测及其探针分子
CN114182029A (zh) * 2021-11-30 2022-03-15 石家庄君乐宝乳业有限公司 一种引物组合及其在检测乳制品中阪崎克罗诺杆菌的应用
CN116516038B (zh) * 2023-06-28 2023-09-15 圣湘生物科技股份有限公司 血流感染病原体联检并区分的组合物、试剂盒及用途

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2283458A1 (en) * 1999-09-28 2001-03-28 Michel G. Bergeron Highly conserved genes and their use to generate species-specific, genus-specific, family-specific, group-specific and universal nucleic acid probes and amplification primers to rapidly detect and identify bacterial, fungal and parasitical pathogens from clinical specimens for diagnosis
CA2937907C (en) * 1999-09-28 2017-08-22 Geneohm Sciences Canada Inc. Nucleic acids, methods and kits for the detection of campylobacter
WO2007002567A2 (en) * 2005-06-23 2007-01-04 Nanosphere, Inc. Selective isolation and concentration of nucleic acids from complex samples
US8632968B2 (en) * 2005-07-27 2014-01-21 Diagnostic Array Systems Pty Ltd Method for the detection and/or identification of a microorganism

Also Published As

Publication number Publication date
AU2008274856A1 (en) 2009-01-15
EP2176281A4 (en) 2010-09-15
WO2009006743A1 (en) 2009-01-15
EP2176281A1 (en) 2010-04-21
US20110151453A1 (en) 2011-06-23
JP2010532665A (ja) 2010-10-14

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Legal Events

Date Code Title Description
FZDE Discontinued

Effective date: 20140711