CA2560945C - Quantitative amplification with a labeled probe and 3' to 5' exonuclease activity - Google Patents
Quantitative amplification with a labeled probe and 3' to 5' exonuclease activity Download PDFInfo
- Publication number
- CA2560945C CA2560945C CA2560945A CA2560945A CA2560945C CA 2560945 C CA2560945 C CA 2560945C CA 2560945 A CA2560945 A CA 2560945A CA 2560945 A CA2560945 A CA 2560945A CA 2560945 C CA2560945 C CA 2560945C
- Authority
- CA
- Canada
- Prior art keywords
- polymerase
- probe
- nucleic acid
- glu
- sequence
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Expired - Lifetime
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6851—Quantitative amplification
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US55913704P | 2004-04-01 | 2004-04-01 | |
| US60/559,137 | 2004-04-01 | ||
| PCT/US2005/010782 WO2005098042A2 (en) | 2004-04-01 | 2005-03-31 | Quantitative amplification with a labeled probe and 3' to 5' exonuclease activity |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CA2560945A1 CA2560945A1 (en) | 2005-10-20 |
| CA2560945C true CA2560945C (en) | 2013-06-18 |
Family
ID=35125684
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA2560945A Expired - Lifetime CA2560945C (en) | 2004-04-01 | 2005-03-31 | Quantitative amplification with a labeled probe and 3' to 5' exonuclease activity |
Country Status (6)
| Country | Link |
|---|---|
| US (2) | US7445898B2 (https=) |
| EP (1) | EP1740711A2 (https=) |
| JP (1) | JP4972541B2 (https=) |
| AU (1) | AU2005230833B2 (https=) |
| CA (1) | CA2560945C (https=) |
| WO (1) | WO2005098042A2 (https=) |
Families Citing this family (35)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20070134686A1 (en) * | 1999-10-29 | 2007-06-14 | Stratagene California | Methods and compositions for detection of a target nucleic acid sequence utilizing a probe with a 3' flap |
| US7793233B1 (en) | 2003-03-12 | 2010-09-07 | Microsoft Corporation | System and method for customizing note flags |
| AU2006204006A1 (en) | 2005-01-06 | 2006-07-13 | Applera Corporation | Polypeptides having nucleic acid binding activity and compositions and methods for nucleic acid amplification |
| US20070059713A1 (en) | 2005-09-09 | 2007-03-15 | Lee Jun E | SSB-DNA polymerase fusion proteins |
| US8133701B2 (en) * | 2006-12-05 | 2012-03-13 | Sequenom, Inc. | Detection and quantification of biomolecules using mass spectrometry |
| US7902345B2 (en) * | 2006-12-05 | 2011-03-08 | Sequenom, Inc. | Detection and quantification of biomolecules using mass spectrometry |
| JP2008182920A (ja) * | 2007-01-29 | 2008-08-14 | Sony Corp | 蛍光標識オリゴヌクレオチドと該オリゴヌクレオチドを利用する方法 |
| WO2009032781A2 (en) | 2007-08-29 | 2009-03-12 | Sequenom, Inc. | Methods and compositions for universal size-specific polymerase chain reaction |
| US20100143901A1 (en) * | 2008-12-09 | 2010-06-10 | Roche Molecular Systems, Inc. | Nuclease-Free Real-Time Detection of Nucleic Acids |
| EP2382321A4 (en) | 2009-01-08 | 2012-12-19 | Bio Rad Laboratories | METHODS AND COMPOSITIONS FOR ENHANCING THE EFFICACY OF NUCLEIC ACID AMPLIFICATION REACTIONS |
| US9778188B2 (en) | 2009-03-11 | 2017-10-03 | Industrial Technology Research Institute | Apparatus and method for detection and discrimination molecular object |
| US20100279295A1 (en) * | 2009-03-18 | 2010-11-04 | Sequenom, Inc. | Use of thermostable endonucleases for generating reporter molecules |
| US9758817B2 (en) * | 2010-01-13 | 2017-09-12 | Agilent Technologies, Inc. | Method for identifying a nucleic acid in a sample |
| US9482615B2 (en) | 2010-03-15 | 2016-11-01 | Industrial Technology Research Institute | Single-molecule detection system and methods |
| US9670243B2 (en) * | 2010-06-02 | 2017-06-06 | Industrial Technology Research Institute | Compositions and methods for sequencing nucleic acids |
| US8865078B2 (en) | 2010-06-11 | 2014-10-21 | Industrial Technology Research Institute | Apparatus for single-molecule detection |
| US9617588B2 (en) | 2010-10-05 | 2017-04-11 | Thermo Fisher Scientific Baltics Uab | Enzyme mixture |
| SG193990A1 (en) | 2011-04-08 | 2013-11-29 | Bio Rad Laboratories | Pcr reaction mixtures with decreased non-specific activity |
| CN104039978A (zh) * | 2011-09-29 | 2014-09-10 | 露美内克丝公司 | 水解探针 |
| EP4361609A3 (en) | 2012-02-03 | 2024-07-17 | California Institute of Technology | Signal encoding and decoding in multiplexed biochemical assays |
| CN104662172B (zh) | 2012-08-03 | 2018-07-06 | 加州理工学院 | Pcr中具有减少的硬件和要求的多重化和定量 |
| ITTO20121154A1 (it) * | 2012-12-27 | 2014-06-28 | Fond Istituto Italiano Di Tecnologia | Sistema di sonde per rivelare una sequenza nucleotidica bersaglio a singolo filamento |
| EP2943590A4 (en) | 2013-01-13 | 2017-02-15 | Unitaq Bio | Methods and compositions for pcr using blocked and universal primers |
| WO2016134059A1 (en) | 2015-02-17 | 2016-08-25 | Bio-Rad Laboratories, Inc. | Small nucleic acid quantification using split cycle amplification |
| WO2017218777A1 (en) | 2016-06-17 | 2017-12-21 | California Institute Of Technology | Nucleic acid reactions and related methods and compositions |
| JP2020504600A (ja) | 2016-12-09 | 2020-02-13 | アルティヴュー, インク. | 標識化核酸イメージング剤を使用した多重イメージングのための改善された方法 |
| CN110325639A (zh) * | 2017-02-22 | 2019-10-11 | 株式会社友华 | 具备假阳性抑制功能的探针、其设计方法及其应用 |
| CN112424377A (zh) | 2018-04-17 | 2021-02-26 | 克罗玛科德公司 | 用于多重分析的方法和系统 |
| US12203129B2 (en) | 2018-07-03 | 2025-01-21 | ChromaCode, Inc. | Formulations and signal encoding and decoding methods for massively multiplexed biochemical assays |
| JP2022513739A (ja) | 2018-12-14 | 2022-02-09 | アルティヴュー, インク. | 標的を逐次検出するための方法及び組成物 |
| CN110724729A (zh) * | 2019-11-18 | 2020-01-24 | 中国科学院成都生物研究所 | 一种荧光探针 |
| US20240025939A1 (en) * | 2020-03-06 | 2024-01-25 | Life Technologies Corporation | High sequence fidelity nucleic acid synthesis and assembly |
| CN111518873B (zh) * | 2020-05-11 | 2024-07-09 | 上海羿鸣生物科技有限公司 | 一种优化的扩增目标核酸的方法及应用 |
| US20210381067A1 (en) * | 2020-06-08 | 2021-12-09 | Ampliwise Inc. | Nucleic acid amplification and detection with attenuaiting probe |
| WO2022155397A1 (en) * | 2021-01-15 | 2022-07-21 | Nuprobe Usa, Inc. | Cycle multiplexing for highly multiplexed quantitative pcr |
Family Cites Families (40)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA1190838A (en) | 1981-07-17 | 1985-07-23 | Cavit Akin | Homogeneous nucleic acid hybridization diagnostics by non-radiative energy transfer |
| US4851331A (en) | 1986-05-16 | 1989-07-25 | Allied Corporation | Method and kit for polynucleotide assay including primer-dependant DNA polymerase |
| US5521301A (en) | 1988-12-12 | 1996-05-28 | City Of Hope | Genotyping of multiple allele systems |
| US5639611A (en) | 1988-12-12 | 1997-06-17 | City Of Hope | Allele specific polymerase chain reaction |
| WO1990011372A1 (en) * | 1989-03-21 | 1990-10-04 | Collaborative Research, Inc. | Multiplex dna diagnostic test |
| US5210015A (en) | 1990-08-06 | 1993-05-11 | Hoffman-La Roche Inc. | Homogeneous assay system using the nuclease activity of a nucleic acid polymerase |
| US5545552A (en) | 1990-12-03 | 1996-08-13 | Stratagene | Purified thermostable pyrococcus furiosus DNA polymerase I |
| US5846717A (en) | 1996-01-24 | 1998-12-08 | Third Wave Technologies, Inc. | Detection of nucleic acid sequences by invader-directed cleavage |
| US5759772A (en) | 1992-07-23 | 1998-06-02 | Wisconsin Alumni Research Foundation | Method for determining the sex of an embryo |
| US6511845B1 (en) | 1992-08-07 | 2003-01-28 | Alan R. Davis | Methods for producing an immune response against HIV-1 |
| US6120992A (en) | 1993-11-04 | 2000-09-19 | Valigene Corporation | Use of immobilized mismatch binding protein for detection of mutations and polymorphisms, and allele identification in a diseased human |
| US5538848A (en) * | 1994-11-16 | 1996-07-23 | Applied Biosystems Division, Perkin-Elmer Corp. | Method for detecting nucleic acid amplification using self-quenching fluorescence probe |
| US5851770A (en) | 1994-04-25 | 1998-12-22 | Variagenics, Inc. | Detection of mismatches by resolvase cleavage using a magnetic bead support |
| US5801155A (en) * | 1995-04-03 | 1998-09-01 | Epoch Pharmaceuticals, Inc. | Covalently linked oligonucleotide minor grove binder conjugates |
| DE59604219D1 (de) | 1995-05-01 | 2000-02-24 | Crown Cork Ag | Schnappverschlussanordnung an einem behälter |
| US5736626A (en) | 1996-01-29 | 1998-04-07 | The Perkin-Elmer Corporation | Solid support reagents for the direct synthesis of 3'-labeled polynucleotides |
| US5955268A (en) | 1996-04-26 | 1999-09-21 | Abbott Laboratories | Method and reagent for detecting multiple nucleic acid sequences in a test sample |
| EP1033411B1 (en) | 1996-06-04 | 2006-02-22 | University of Utah Research Foundation | Fluorescent donor-acceptor pair |
| EP0921196A1 (en) * | 1997-12-02 | 1999-06-09 | Roche Diagnostics GmbH | Modified DNA-polymerase from carboxydothermus hydrogenoformans and its use for coupled reverse transcription and polymerase chain reaction |
| EP0930370B1 (en) | 1997-12-15 | 2007-08-08 | CSL Behring GmbH | Labeled primer for use in detection of target nucleic acids |
| US6277578B1 (en) | 1998-03-13 | 2001-08-21 | Promega Corporation | Deploymerization method for nucleic acid detection of an amplified nucleic acid target |
| US6270973B1 (en) | 1998-03-13 | 2001-08-07 | Promega Corporation | Multiplex method for nucleic acid detection |
| US6391551B1 (en) | 1998-03-13 | 2002-05-21 | Promega Corporation | Detection of nucleic acid hybrids |
| US6150105A (en) | 1998-08-20 | 2000-11-21 | Genetic Assays, Inc. | Methods of screening nucleic acids for nucleotide variations |
| US20030049657A1 (en) * | 1998-11-13 | 2003-03-13 | Cherry Joshua L. | Use of primers containing non-replicatable residues for improved cycle-sequencing of nucleic acids |
| US6316200B1 (en) * | 2000-06-08 | 2001-11-13 | Becton, Dickinson And Company | Probes and methods for detection of nucleic acids |
| US6355435B1 (en) * | 1999-09-10 | 2002-03-12 | Board Of Trustees Of Michigan State University | Methods for detecting and enumerating Campylobacter jejuni in environmental samples and for identifying antibiotic-resistant strains |
| US6528254B1 (en) | 1999-10-29 | 2003-03-04 | Stratagene | Methods for detection of a target nucleic acid sequence |
| US20030228616A1 (en) * | 1999-10-29 | 2003-12-11 | Stratagene | DNA polymerase mutants with reverse transcriptase activity |
| US7955794B2 (en) | 2000-09-21 | 2011-06-07 | Illumina, Inc. | Multiplex nucleic acid reactions |
| JP2004507230A (ja) * | 2000-07-03 | 2004-03-11 | アプレラ コーポレイション | ポリヌクレオチド配列アッセイ |
| DE10049211A1 (de) | 2000-10-05 | 2002-04-18 | Qiagen Gmbh | Thermostabile Polymerase aus Thermococcus pacificus |
| WO2002063049A2 (en) | 2001-02-02 | 2002-08-15 | Genome Therapeutics Corporation | Methods for determining a nucleotide at a specific location within a nucleic acid molecule |
| US6720148B1 (en) | 2001-02-22 | 2004-04-13 | Caliper Life Sciences, Inc. | Methods and systems for identifying nucleotides by primer extension |
| US20030036073A1 (en) | 2001-06-07 | 2003-02-20 | Saba James Anthony | Matrix Sequencing: a novel method of polynucleotide analysis utilizing probes containing universal nucleotides |
| EP1275735A1 (en) | 2001-07-11 | 2003-01-15 | Roche Diagnostics GmbH | Composition and method for hot start nucleic acid amplification |
| AU2002351193A1 (en) * | 2001-11-28 | 2003-06-10 | Mj Bioworks Incorporated | Parallel polymorphism scoring by amplification and error correction |
| US20030180741A1 (en) * | 2001-12-21 | 2003-09-25 | Holly Hogrefe | High fidelity DNA polymerase compositions and uses therefor |
| US6818420B2 (en) | 2002-02-27 | 2004-11-16 | Biosource International, Inc. | Methods of using FET labeled oligonucleotides that include a 3′-5′ exonuclease resistant quencher domain and compositions for practicing the same |
| CN1506471A (zh) * | 2002-12-09 | 2004-06-23 | 核酸检测方法 |
-
2005
- 2005-03-31 CA CA2560945A patent/CA2560945C/en not_active Expired - Lifetime
- 2005-03-31 US US11/097,463 patent/US7445898B2/en not_active Expired - Lifetime
- 2005-03-31 JP JP2007506524A patent/JP4972541B2/ja not_active Expired - Fee Related
- 2005-03-31 AU AU2005230833A patent/AU2005230833B2/en not_active Expired
- 2005-03-31 EP EP05732357A patent/EP1740711A2/en not_active Withdrawn
- 2005-03-31 WO PCT/US2005/010782 patent/WO2005098042A2/en not_active Ceased
-
2008
- 2008-11-03 US US12/264,200 patent/US8426132B2/en not_active Expired - Fee Related
Also Published As
| Publication number | Publication date |
|---|---|
| CA2560945A1 (en) | 2005-10-20 |
| WO2005098042A2 (en) | 2005-10-20 |
| US20100159447A1 (en) | 2010-06-24 |
| EP1740711A2 (en) | 2007-01-10 |
| AU2005230833A1 (en) | 2005-10-20 |
| AU2005230833B2 (en) | 2011-04-14 |
| WO2005098042A3 (en) | 2006-08-24 |
| US8426132B2 (en) | 2013-04-23 |
| JP4972541B2 (ja) | 2012-07-11 |
| US7445898B2 (en) | 2008-11-04 |
| US20060024695A1 (en) | 2006-02-02 |
| JP2007531527A (ja) | 2007-11-08 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| CA2560945C (en) | Quantitative amplification with a labeled probe and 3' to 5' exonuclease activity | |
| CN101506384B (zh) | 专一性寡核苷酸和其在核酸扩增与检测中的用途 | |
| EP3543352B1 (en) | Detection of target nucleic acid sequences by pto cleavage and extension assay | |
| JP5022383B2 (ja) | マグネシウム封鎖によるpcrホットスタート | |
| US7361469B2 (en) | Dual labeled fluorescent probes | |
| US7504218B2 (en) | Key probe compositions and methods for polynucleotide detection | |
| CN101495657B (zh) | 使用可逆修饰寡核苷酸扩增核酸 | |
| CN104603268A (zh) | 协同引物、探针及其应用 | |
| CA3072538A1 (en) | Methods and kits for detection of nucleic acid molecules | |
| CA2472970C (en) | New detection format for hot start real time polymerase chain reaction | |
| US20070015180A1 (en) | Oligonucleotide probe/primer compositions and methods for polynucleotide detection | |
| US20060194222A1 (en) | Triplex probe compositions and methods for polynucleotide detection | |
| US20070020656A1 (en) | Snapback oligonucleotide probe |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| EEER | Examination request |