AU2021329812B2 - Sequential encoding methods and related kits - Google Patents

Sequential encoding methods and related kits

Info

Publication number
AU2021329812B2
AU2021329812B2 AU2021329812A AU2021329812A AU2021329812B2 AU 2021329812 B2 AU2021329812 B2 AU 2021329812B2 AU 2021329812 A AU2021329812 A AU 2021329812A AU 2021329812 A AU2021329812 A AU 2021329812A AU 2021329812 B2 AU2021329812 B2 AU 2021329812B2
Authority
AU
Australia
Prior art keywords
tag
binding agent
macromolecule
nucleic acid
binding
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
AU2021329812A
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English (en)
Other versions
AU2021329812A1 (en
Inventor
Mark S. Chee
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Encodia Inc
Original Assignee
Encodia Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Encodia Inc filed Critical Encodia Inc
Publication of AU2021329812A1 publication Critical patent/AU2021329812A1/en
Application granted granted Critical
Publication of AU2021329812B2 publication Critical patent/AU2021329812B2/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C40—COMBINATORIAL TECHNOLOGY
    • C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B70/00—Tags or labels specially adapted for combinatorial chemistry or libraries, e.g. fluorescent tags or bar codes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1065—Preparation or screening of tagged libraries, e.g. tagged microorganisms by STM-mutagenesis, tagged polynucleotides, gene tags
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Genetics & Genomics (AREA)
  • Engineering & Computer Science (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biomedical Technology (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Plant Pathology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Medicinal Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Peptides Or Proteins (AREA)
  • Preparation Of Compounds By Using Micro-Organisms (AREA)
AU2021329812A 2020-08-19 2021-08-16 Sequential encoding methods and related kits Active AU2021329812B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US202063067744P 2020-08-19 2020-08-19
US63/067,744 2020-08-19
PCT/US2021/046164 WO2022040098A1 (en) 2020-08-19 2021-08-16 Sequential encoding methods and related kits

Publications (2)

Publication Number Publication Date
AU2021329812A1 AU2021329812A1 (en) 2023-03-09
AU2021329812B2 true AU2021329812B2 (en) 2026-05-07

Family

ID=80350651

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2021329812A Active AU2021329812B2 (en) 2020-08-19 2021-08-16 Sequential encoding methods and related kits

Country Status (8)

Country Link
US (1) US12668793B2 (enExample)
EP (2) EP4196581B1 (enExample)
JP (1) JP2023538074A (enExample)
CN (1) CN116685725A (enExample)
AU (1) AU2021329812B2 (enExample)
CA (1) CA3176922A1 (enExample)
ES (1) ES3073780T3 (enExample)
WO (1) WO2022040098A1 (enExample)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023201365A1 (en) * 2022-04-15 2023-10-19 Encodia, Inc. High throughput peptide identification using conjugated binders and kinetic encoding
IL328221A (en) * 2023-11-09 2026-07-01 2026 Df Peptide Acquisition Llc Methods for identifying polypeptides

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US20190145982A1 (en) * 2016-05-02 2019-05-16 Encodia, Inc. Macromolecule analysis employing nucleic acid encoding

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CA2745197A1 (en) 2008-12-01 2010-06-10 Research Triangle Institute Concurrent identification of multitudes of polypeptides
US9566335B1 (en) 2009-09-25 2017-02-14 The Governing Council Of The University Of Toronto Protein sequencing method and reagents
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WO2012049285A1 (en) 2010-10-14 2012-04-19 Octapharma Ag A method for the quantitative glycosylation analysis of proteins
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EP2726494B1 (en) 2011-06-28 2017-01-04 Whitehead Institute For Biomedical Research Using sortases to install click chemistry handles for protein ligation
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US9435810B2 (en) 2013-03-15 2016-09-06 Washington University Molecules and methods for iterative polypeptide analysis and processing
CN104212791B (zh) 2013-06-03 2019-03-08 无锡青兰生物科技有限公司 一种基于双向等温延伸的核酸合成方法
CN111500680B (zh) 2013-06-25 2024-04-16 普罗格诺西斯生物科学公司 检测样品中生物靶标的空间分布的方法和系统
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WO2018204854A1 (en) * 2017-05-05 2018-11-08 The United States Of America, As Represented By The Secretary, Department Of Health And Human Services Methods of preparing a re-usable single cell and methods for analyzing the epigenome, transcriptome, and genome of a single cell
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US20210396762A1 (en) 2020-06-19 2021-12-23 Encodia, Inc. Methods for peptide analysis employing multi-component detection agent and related kits
MX2020004559A (es) 2017-10-31 2020-10-05 Encodia Inc Kits para análisis utilizando codificación y/o etiqueta de ácido nucleico.
US20210355483A1 (en) 2017-10-31 2021-11-18 Encodia, Inc. Methods and kits using nucleic acid encoding and/or label
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EP3963070A4 (en) 2019-04-30 2023-02-22 Encodia, Inc. METHODS OF PREPARATION OF ANALYTES AND RELATED KITS
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Publication number Priority date Publication date Assignee Title
US20190145982A1 (en) * 2016-05-02 2019-05-16 Encodia, Inc. Macromolecule analysis employing nucleic acid encoding

Also Published As

Publication number Publication date
EP4759938A2 (en) 2026-06-17
EP4196581A1 (en) 2023-06-21
WO2022040098A1 (en) 2022-02-24
JP2023538074A (ja) 2023-09-06
EP4759938A3 (en) 2026-07-01
US20230136966A1 (en) 2023-05-04
EP4196581B1 (en) 2026-02-25
US12668793B2 (en) 2026-06-30
AU2021329812A1 (en) 2023-03-09
EP4196581A4 (en) 2024-05-29
ES3073780T3 (en) 2026-07-15
CA3176922A1 (en) 2022-02-24
CN116685725A (zh) 2023-09-01

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