AU2020371626B2 - Increased calculation efficiency for structured illumination microscopy - Google Patents
Increased calculation efficiency for structured illumination microscopy Download PDFInfo
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- AU2020371626B2 AU2020371626B2 AU2020371626A AU2020371626A AU2020371626B2 AU 2020371626 B2 AU2020371626 B2 AU 2020371626B2 AU 2020371626 A AU2020371626 A AU 2020371626A AU 2020371626 A AU2020371626 A AU 2020371626A AU 2020371626 B2 AU2020371626 B2 AU 2020371626B2
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/645—Specially adapted constructive features of fluorimeters
- G01N21/6456—Spatial resolved fluorescence measurements; Imaging
- G01N21/6458—Fluorescence microscopy
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- G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
- G02B21/00—Microscopes
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- G02B21/002—Scanning microscopes
- G02B21/0024—Confocal scanning microscopes (CSOMs) or confocal "macroscopes"; Accessories which are not restricted to use with CSOMs, e.g. sample holders
- G02B21/0032—Optical details of illumination, e.g. light-sources, pinholes, beam splitters, slits, fibers
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- G02B21/0024—Confocal scanning microscopes (CSOMs) or confocal "macroscopes"; Accessories which are not restricted to use with CSOMs, e.g. sample holders
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- G—PHYSICS
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- G02B21/00—Microscopes
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- G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
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- G02B21/365—Control or image processing arrangements for digital or video microscopes
- G02B21/367—Control or image processing arrangements for digital or video microscopes providing an output produced by processing a plurality of individual source images, e.g. image tiling, montage, composite images, depth sectioning, image comparison
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- G—PHYSICS
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- G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
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- G02B27/60—Systems using moiré fringes
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- G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
- G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
- G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
- G01N21/64—Fluorescence; Phosphorescence
- G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
- G01N2021/6439—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes" with indicators, stains, dyes, tags, labels, marks
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- G—PHYSICS
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- G01N2201/00—Features of devices classified in G01N21/00
- G01N2201/06—Illumination; Optics
- G01N2201/063—Illuminating optical parts
- G01N2201/0635—Structured illumination, e.g. with grating
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- G06T2207/20056—Discrete and fast Fourier transform, [DFT, FFT]
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- G—PHYSICS
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- G06T2207/00—Indexing scheme for image analysis or image enhancement
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- G06T2207/20212—Image combination
- G06T2207/20221—Image fusion; Image merging
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- G—PHYSICS
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- G06T2207/30—Subject of image; Context of image processing
- G06T2207/30004—Biomedical image processing
- G06T2207/30024—Cell structures in vitro; Tissue sections in vitro
Landscapes
- Physics & Mathematics (AREA)
- General Physics & Mathematics (AREA)
- Chemical & Material Sciences (AREA)
- Optics & Photonics (AREA)
- Analytical Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Theoretical Computer Science (AREA)
- Immunology (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Pathology (AREA)
- General Health & Medical Sciences (AREA)
- Biochemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Multimedia (AREA)
- General Engineering & Computer Science (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Microscoopes, Condenser (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
- Image Processing (AREA)
- Investigating Or Analysing Materials By Optical Means (AREA)
- Non-Portable Lighting Devices Or Systems Thereof (AREA)
- Circuit Arrangement For Electric Light Sources In General (AREA)
Applications Claiming Priority (9)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201962924138P | 2019-10-21 | 2019-10-21 | |
| US201962924130P | 2019-10-21 | 2019-10-21 | |
| US62/924,138 | 2019-10-21 | ||
| US62/924,130 | 2019-10-21 | ||
| US17/075,694 | 2020-10-21 | ||
| US17/075,692 US11525990B2 (en) | 2019-10-21 | 2020-10-21 | Systems and methods for structured illumination microscopy |
| US17/075,692 | 2020-10-21 | ||
| PCT/US2020/056718 WO2021081129A1 (en) | 2019-10-21 | 2020-10-21 | Increased calculation efficiency for structured illumination microscopy |
| US17/075,694 US11340437B2 (en) | 2019-10-21 | 2020-10-21 | Increased calculation efficiency for structured illumination microscopy |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| AU2020371626A1 AU2020371626A1 (en) | 2022-05-12 |
| AU2020371626B2 true AU2020371626B2 (en) | 2025-04-03 |
Family
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Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
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| AU2020371626A Active AU2020371626B2 (en) | 2019-10-21 | 2020-10-21 | Increased calculation efficiency for structured illumination microscopy |
| AU2020370160A Active AU2020370160C1 (en) | 2019-10-21 | 2020-10-21 | Systems and methods for structured illumination microscopy |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AU2020370160A Active AU2020370160C1 (en) | 2019-10-21 | 2020-10-21 | Systems and methods for structured illumination microscopy |
Country Status (11)
| Country | Link |
|---|---|
| US (4) | US11340437B2 (https=) |
| EP (2) | EP4049232B1 (https=) |
| JP (2) | JP7637131B2 (https=) |
| KR (2) | KR102767442B1 (https=) |
| CN (3) | CN116360086B (https=) |
| AU (2) | AU2020371626B2 (https=) |
| BR (2) | BR112022007292A2 (https=) |
| IL (2) | IL292170B2 (https=) |
| MX (2) | MX2022004773A (https=) |
| WO (2) | WO2021081129A1 (https=) |
| ZA (2) | ZA202204436B (https=) |
Families Citing this family (25)
| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2021081129A1 (en) | 2019-10-21 | 2021-04-29 | Illumina, Inc. | Increased calculation efficiency for structured illumination microscopy |
| US11060138B1 (en) * | 2020-01-17 | 2021-07-13 | Element Biosciences, Inc. | Nucleic acid sequencing systems |
| US11188778B1 (en) * | 2020-05-05 | 2021-11-30 | Illumina, Inc. | Equalization-based image processing and spatial crosstalk attenuator |
| DE102020123668A1 (de) * | 2020-09-10 | 2022-03-10 | Carl Zeiss Microscopy Gmbh | Verfahren zur Bildauswertung für die SIM-Mikroskopie und SIM-Mikroskopieverfahren |
| DE102020211380A1 (de) * | 2020-09-10 | 2022-03-10 | Carl Zeiss Microscopy Gmbh | Verfahren zum superauflösenden Auswerten von strukturiert beleuchteten Mikroskopbildern und Mikroskop mit strukturierter Beleuchtung |
| US20220101494A1 (en) * | 2020-09-30 | 2022-03-31 | Nvidia Corporation | Fourier transform-based image synthesis using neural networks |
| US11361194B2 (en) | 2020-10-27 | 2022-06-14 | Illumina, Inc. | Systems and methods for per-cluster intensity correction and base calling |
| GB202106287D0 (en) * | 2021-04-30 | 2021-06-16 | Univ Dublin Technological | Method and system for spatial frequency spectrum optimisation of written text to closely resemble a natural environment |
| US12524867B2 (en) * | 2021-05-21 | 2026-01-13 | Kla Corporation | System and method for optical wafer characterization with image up-sampling |
| CN113160096B (zh) * | 2021-05-27 | 2023-12-08 | 山东中医药大学 | 一种基于视网膜模型的低光图像增强方法 |
| EP4374343B1 (en) | 2021-07-19 | 2025-12-03 | Illumina, Inc. | Intensity extraction with interpolation and adaptation for base calling |
| US11455487B1 (en) | 2021-10-26 | 2022-09-27 | Illumina Software, Inc. | Intensity extraction and crosstalk attenuation using interpolation and adaptation for base calling |
| AU2022316142A1 (en) | 2021-07-21 | 2024-02-22 | Element Biosciences, Inc. | Optical systems for nucleic acid sequencing and methods thereof |
| CN113917677B (zh) * | 2021-09-09 | 2023-05-05 | 北京纳析光电科技有限公司 | 一种三维超分辨率光片显微成像方法和显微镜 |
| EP4427086A4 (en) * | 2021-11-04 | 2025-12-03 | Us Health | SYSTEMS AND METHODS OF THREE-DIMENSIONAL STRUCTURED ILLUMINATION MICROSCOPY WITH ISOTROPIC SPATIAL RESOLUTION |
| US20230244746A1 (en) * | 2022-02-01 | 2023-08-03 | The Regents Of The University Of Michigan | Hardware efficient weight structure for sparse deep neural networks |
| TWI783896B (zh) * | 2022-04-08 | 2022-11-11 | 國立清華大學 | 用於輕元素薄膜的三維影像重建方法及系統 |
| CN114998161A (zh) * | 2022-06-02 | 2022-09-02 | 中国科学院西安光学精密机械研究所 | 一种基于完美傅里叶变换的傅里叶叠层显微术高精度重构图像方法 |
| CN115541550B (zh) * | 2022-10-21 | 2025-10-21 | 南京理工大学 | 基于主成分分析的结构光照明显微成像方法 |
| CN120500655A (zh) * | 2022-12-27 | 2025-08-15 | 新加坡国立大学 | 用于使用结构照明显微镜来进行图像重建的系统和方法 |
| CN116452436A (zh) * | 2023-03-15 | 2023-07-18 | 宁波江丰生物信息技术有限公司 | 图像增强方法及宽场荧光成像系统 |
| CN117635506B (zh) * | 2024-01-24 | 2024-04-05 | 成都航天凯特机电科技有限公司 | 一种基于AI赋能Mean Shift算法的图像增强方法及装置 |
| WO2026051087A1 (en) * | 2024-09-09 | 2026-03-12 | Csr Biotech (Guangzhou) Co., Ltd. | Realtime structured illumination super-resolution high-throughput imaging method |
| DE102024003249A1 (de) * | 2024-09-30 | 2026-04-02 | Carl Zeiss Microscopy Gmbh | Verfahren zum Auswerten von strukturiert beleuchteten Mikroskopbildern und Mikroskop mit strukturierter Beleuchtung |
| CN121297720B (zh) * | 2025-12-12 | 2026-04-03 | 西安唐晶量子科技有限公司 | 一种vcsel外延片晶圆翘曲度检测方法 |
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| US6169723B1 (en) | 1997-07-02 | 2001-01-02 | Telefonaktiebolaget Lm Ericsson | Computationally efficient analysis and synthesis of real signals using discrete fourier transforms and inverse discrete fourier transforms |
| US7054504B2 (en) * | 1999-02-25 | 2006-05-30 | Ludwig Lester F | Relative optical path phase reconstruction in the correction of misfocused images using fractional powers of the fourier transform |
| EP4071458B1 (en) * | 2005-09-21 | 2025-11-05 | Luminex Corporation | Methods and systems for image data processing |
| US7803609B2 (en) | 2006-07-21 | 2010-09-28 | Affymetrix, Inc. | System, method, and product for generating patterned illumination |
| EP2150806A4 (en) * | 2007-05-10 | 2013-01-02 | Pacific Biosciences California | METHODS AND SYSTEMS FOR ANALYZING FLUORESCENT MATERIAL WITH LIMITED AUTOFLUORESCENCE |
| DE102008009216A1 (de) * | 2008-02-13 | 2009-08-20 | Carl Zeiss Microimaging Gmbh | Vorrichtung und Verfahren zum räumlich hochauflösenden Abbilden einer Struktur einer Probe |
| CN102473286B (zh) * | 2009-07-08 | 2014-12-10 | 工业研究与发展基金会有限公司 | 超分辨率信号重构的方法和系统 |
| US10051240B2 (en) * | 2010-06-14 | 2018-08-14 | Howard Hughes Medical Institute | Structured plane illumination microscopy |
| RU2431889C1 (ru) * | 2010-08-06 | 2011-10-20 | Дмитрий Валерьевич Шмунк | Способ суперразрешения изображений и нелинейный цифровой фильтр для его осуществления |
| US8896918B2 (en) * | 2010-12-24 | 2014-11-25 | Huron Technologies International Inc. | Pathology slide scanner |
| CA2854675C (en) * | 2011-11-08 | 2017-08-22 | Universite Laval | Method and system for improving resolution in laser imaging microscopy |
| US9025881B2 (en) * | 2012-02-06 | 2015-05-05 | Nanyang Technological University | Methods and apparatus for recovering phase and amplitude from intensity images |
| US20140323325A1 (en) * | 2013-03-06 | 2014-10-30 | Marc Beal | Molecular imaging and related methods |
| PL3661069T3 (pl) * | 2013-04-15 | 2022-01-17 | Huawei Technologies Co., Ltd. | Sposób raportowania informacji o stanie kanału, sprzęcie użytkownika i stacji bazowej |
| KR101479249B1 (ko) * | 2013-11-08 | 2015-01-05 | 한국표준과학연구원 | 간섭성 구조조명 이미징 방법 및 간섭성 구조조명 현미경 시스템 |
| KR101644411B1 (ko) * | 2014-05-21 | 2016-08-01 | 주식회사 에이티엠 | 고해상도 이미지 복원 장치 및 그 방법 |
| WO2016168941A1 (en) | 2015-04-23 | 2016-10-27 | The University Of British Columbia | Multifocal method and apparatus for stabilization of optical systems |
| JP6630120B2 (ja) | 2015-11-06 | 2020-01-15 | 浜松ホトニクス株式会社 | 画像取得装置、画像取得方法、及び空間光変調ユニット |
| US20180348500A1 (en) * | 2015-11-11 | 2018-12-06 | Scopio Labs Ltd. | Scanning microscope with real time response |
| CN109313328A (zh) * | 2016-06-21 | 2019-02-05 | 伊鲁米那股份有限公司 | 超分辨率显微术 |
| US10551357B2 (en) * | 2016-09-28 | 2020-02-04 | The Regents Of The University Of Colorado, A Body Corporate | High resolution photoacoustic imaging in scattering media using structured illumination |
| GB201620744D0 (en) | 2016-12-06 | 2017-01-18 | Roadmap Systems Ltd | Multimode fibre optical switching systems |
| WO2018146562A1 (en) * | 2017-02-09 | 2018-08-16 | Technion Research & Development Foundation Ltd. | Sparsity-based super-resolution correlation microscopy |
| CN106770147B (zh) * | 2017-03-15 | 2019-07-19 | 北京大学 | 一种结构光照明超分辨显微成像方法 |
| DE102017119531A1 (de) * | 2017-08-25 | 2019-02-28 | Carl Zeiss Microscopy Gmbh | Hochauflösende 2D-Mikroskopie mit verbesserter Schnittdicke |
| NL2020623B1 (en) | 2018-01-24 | 2019-07-30 | Illumina Inc | Structured illumination microscopy with line scanning |
| NL2020622B1 (en) | 2018-01-24 | 2019-07-30 | Lllumina Cambridge Ltd | Reduced dimensionality structured illumination microscopy with patterned arrays of nanowells |
| WO2021081129A1 (en) | 2019-10-21 | 2021-04-29 | Illumina, Inc. | Increased calculation efficiency for structured illumination microscopy |
| TWI868262B (zh) * | 2019-12-06 | 2025-01-01 | 美商伊路米納有限公司 | 提供參數估計的裝置和方法以及相關的處理器可讀取媒體 |
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2020
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- 2020-10-21 KR KR1020227013332A patent/KR102767442B1/ko active Active
- 2020-10-21 AU AU2020370160A patent/AU2020370160C1/en active Active
- 2020-10-21 KR KR1020227013331A patent/KR102902249B1/ko active Active
- 2020-10-21 CN CN202310395344.6A patent/CN116360086B/zh active Active
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- 2020-10-21 MX MX2022004773A patent/MX2022004773A/es unknown
- 2020-10-21 CN CN202080073255.4A patent/CN114600152A/zh active Pending
- 2020-10-21 JP JP2022523692A patent/JP7554824B2/ja active Active
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- 2020-10-21 IL IL292170A patent/IL292170B2/en unknown
- 2020-10-21 CN CN202080072888.3A patent/CN114829906B/zh active Active
- 2020-10-21 IL IL292169A patent/IL292169B2/en unknown
- 2020-10-21 WO PCT/US2020/056717 patent/WO2021081128A1/en not_active Ceased
- 2020-10-21 US US17/075,694 patent/US11340437B2/en active Active
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- 2020-10-21 MX MX2022004774A patent/MX2022004774A/es unknown
- 2020-10-21 BR BR112022007283A patent/BR112022007283A2/pt unknown
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2022
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Non-Patent Citations (2)
| Title |
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| AMIT LAL ET AL, STRUCTURED ILLUMINATION MICROSCOPY IMAGE RECONSTRUCTION ALGORITHM, 19 February 2016 (2016-02-19) * |
| GUSTAFSSON M G L: "Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy", JOURNAL OF MICROSCOPY, BLACKWELL SCIENCE, GB, vol. 198, 1 May 2000 (2000-05-01), pages 82 - 87 * |
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