AU2020269377C1 - Fast-forward sequencing by synthesis methods - Google Patents

Fast-forward sequencing by synthesis methods Download PDF

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AU2020269377C1
AU2020269377C1 AU2020269377A AU2020269377A AU2020269377C1 AU 2020269377 C1 AU2020269377 C1 AU 2020269377C1 AU 2020269377 A AU2020269377 A AU 2020269377A AU 2020269377 A AU2020269377 A AU 2020269377A AU 2020269377 C1 AU2020269377 C1 AU 2020269377C1
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region
flow
sequencing
primer
sequence
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AU2020269377A1 (en
AU2020269377B2 (en
Inventor
Gilad Almogy
Omer BARAD
Dumitru Brinza
Yoav ETZIONI
Florian OBERSTRASS
Mark Pratt
Eliane Trepagnier
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Ultima Genomics Inc
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Ultima Genomics Inc
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    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6827Hybridisation assays for detection of mutation or polymorphism
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • C12Q1/6874Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • GPHYSICS
    • G16INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16BBIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2535/00Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
    • C12Q2535/122Massive parallel sequencing

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Genetics & Genomics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
AU2020269377A 2019-05-03 2020-05-01 Fast-forward sequencing by synthesis methods Active AU2020269377C1 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2024219619A AU2024219619A1 (en) 2019-05-03 2024-09-11 Fast-forward sequencing by synthesis methods

Applications Claiming Priority (7)

Application Number Priority Date Filing Date Title
US201962842534P 2019-05-03 2019-05-03
US62/842,534 2019-05-03
US201962904274P 2019-09-23 2019-09-23
US62/904,274 2019-09-23
US202062971530P 2020-02-07 2020-02-07
US62/971,530 2020-02-07
PCT/US2020/031163 WO2020227143A1 (en) 2019-05-03 2020-05-01 Fast-forward sequencing by synthesis methods

Related Child Applications (1)

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AU2024219619A Division AU2024219619A1 (en) 2019-05-03 2024-09-11 Fast-forward sequencing by synthesis methods

Publications (3)

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AU2020269377A1 AU2020269377A1 (en) 2021-11-25
AU2020269377B2 AU2020269377B2 (en) 2024-06-13
AU2020269377C1 true AU2020269377C1 (en) 2024-12-12

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AU2020269377A Active AU2020269377C1 (en) 2019-05-03 2020-05-01 Fast-forward sequencing by synthesis methods
AU2024219619A Abandoned AU2024219619A1 (en) 2019-05-03 2024-09-11 Fast-forward sequencing by synthesis methods

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US (5) US20200377937A1 (https=)
EP (1) EP3963104A4 (https=)
JP (1) JP2022533801A (https=)
KR (1) KR102937518B1 (https=)
CN (1) CN114096682B (https=)
AU (2) AU2020269377C1 (https=)
IL (1) IL287707A (https=)
WO (1) WO2020227143A1 (https=)

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CN114423873B (zh) 2019-07-10 2025-06-13 阿尔缇玛基因组学公司 Rna测序方法
EP4081653B1 (en) 2019-12-23 2024-07-03 Singular Genomics Systems, Inc. Methods for long read sequencing
US20230407385A1 (en) * 2020-11-04 2023-12-21 Ultima Genomics, Inc. Methods and systems for phasing sequencing strands and long-range sequencing
EP4247979A4 (en) * 2020-11-18 2024-09-25 Ultima Genomics, Inc. METHODS AND SYSTEMS FOR DETECTION OF RESIDUAL DISEASE
WO2022204685A1 (en) * 2021-03-23 2022-09-29 Ultima Genomics, Inc. Methods for sequencing nucleic acid molecules with sequential barcodes
WO2024137873A1 (en) * 2022-12-22 2024-06-27 Ultima Genomics, Inc. Quantification of co-localized tag sequences using orthogonal sequence encoding
CN118581200A (zh) * 2023-03-01 2024-09-03 体学生物科技股份有限公司 核酸分子的检测方法、检测套组及检测卡匣
WO2025007019A2 (en) * 2023-06-30 2025-01-02 Ultima Genomics, Inc. Nucleic acid molecule sequencing systems and methods

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Publication number Publication date
US20230060685A1 (en) 2023-03-02
CN114096682B (zh) 2025-06-13
AU2020269377A1 (en) 2021-11-25
CN114096682A (zh) 2022-02-25
IL287707A (en) 2021-12-01
WO2020227143A1 (en) 2020-11-12
US20210054442A1 (en) 2021-02-25
US20250197928A1 (en) 2025-06-19
AU2024219619A1 (en) 2024-10-10
US20200377937A1 (en) 2020-12-03
EP3963104A4 (en) 2023-11-08
JP2022533801A (ja) 2022-07-25
US12209278B2 (en) 2025-01-28
KR102937518B1 (ko) 2026-03-11
CA3138862A1 (en) 2020-12-10
AU2020269377B2 (en) 2024-06-13
US20220170089A1 (en) 2022-06-02
EP3963104A1 (en) 2022-03-09
US11459609B2 (en) 2022-10-04
KR20220032516A (ko) 2022-03-15

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