AU2002367838A1 - DNA microarrays comprising active chromatin elements and comprehensive profiling therewith - Google Patents

DNA microarrays comprising active chromatin elements and comprehensive profiling therewith Download PDF

Info

Publication number
AU2002367838A1
AU2002367838A1 AU2002367838A AU2002367838A AU2002367838A1 AU 2002367838 A1 AU2002367838 A1 AU 2002367838A1 AU 2002367838 A AU2002367838 A AU 2002367838A AU 2002367838 A AU2002367838 A AU 2002367838A AU 2002367838 A1 AU2002367838 A1 AU 2002367838A1
Authority
AU
Australia
Prior art keywords
dna
array
profile
elements
cells
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2002367838A
Other languages
English (en)
Inventor
Michael Mcarthur
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Stamatoyannopoulos John A
Original Assignee
Stamatoyannopoulos John A
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Stamatoyannopoulos John A filed Critical Stamatoyannopoulos John A
Publication of AU2002367838A1 publication Critical patent/AU2002367838A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/102—Mutagenizing nucleic acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09—Recombinant DNA-technology
    • C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034—Isolating an individual clone by screening libraries
    • C12N15/1072—Differential gene expression library synthesis, e.g. subtracted libraries, differential screening
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2830/00—Vector systems having a special element relevant for transcription
    • C12N2830/80—Vector systems having a special element relevant for transcription from vertebrates
    • C12N2830/85—Vector systems having a special element relevant for transcription from vertebrates mammalian
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Biomedical Technology (AREA)
  • Wood Science & Technology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Plant Pathology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
AU2002367838A 2001-05-11 2002-05-13 DNA microarrays comprising active chromatin elements and comprehensive profiling therewith Abandoned AU2002367838A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US29003601P 2001-05-11 2001-05-11
US60/290,036 2001-05-11
PCT/US2002/015032 WO2003095608A2 (en) 2001-05-11 2002-05-13 Dna microarrays comprising active chromatin elements and comprehensive profiling therewith

Publications (1)

Publication Number Publication Date
AU2002367838A1 true AU2002367838A1 (en) 2003-11-11

Family

ID=29420206

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2002367838A Abandoned AU2002367838A1 (en) 2001-05-11 2002-05-13 DNA microarrays comprising active chromatin elements and comprehensive profiling therewith

Country Status (6)

Country Link
US (1) US20030170689A1 (enExample)
EP (1) EP1407053A4 (enExample)
JP (1) JP2005519635A (enExample)
AU (1) AU2002367838A1 (enExample)
CA (1) CA2460679A1 (enExample)
WO (1) WO2003095608A2 (enExample)

Families Citing this family (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2001084148A2 (en) * 2000-04-28 2001-11-08 Sangamo Biosciences, Inc. Pharmacogenomics and identification of drug targets by reconstruction of signal transduction pathways based on sequences of accessible regions
US20040014086A1 (en) * 2001-05-11 2004-01-22 Regulome Corporation Regulome arrays
WO2003058193A2 (en) * 2001-07-02 2003-07-17 The Board Of Trustees Of The Leland Stanford Junior University Microarrays for cell phenotyping and manipulation
US20110151438A9 (en) * 2001-11-19 2011-06-23 Affymetrix, Inc. Methods of Analysis of Methylation
US20050003369A1 (en) * 2002-10-10 2005-01-06 Affymetrix, Inc. Method for depleting specific nucleic acids from a mixture
WO2005118873A2 (en) * 2004-05-28 2005-12-15 Cemines, Inc. Compositions and methods for detecting open chromatin and for genome-wide chromatin state profiling
GB0419419D0 (en) * 2004-09-01 2004-10-06 Medical Res Council Method
CA2607327A1 (en) * 2005-04-29 2006-11-09 The Regents Of The University Of California Antibodies against histone modifications for clinical diagnosis and prognosis of cancer
US20060292585A1 (en) * 2005-06-24 2006-12-28 Affymetrix, Inc. Analysis of methylation using nucleic acid arrays
US7901882B2 (en) 2006-03-31 2011-03-08 Affymetrix, Inc. Analysis of methylation using nucleic acid arrays
WO2008024473A2 (en) 2006-08-24 2008-02-28 University Of Massachusetts Medical School Mapping of genomic interactions
US8076070B2 (en) * 2008-08-06 2011-12-13 University Of Southern California Genome-wide chromosome conformation capture
EP4219710A3 (en) * 2014-08-01 2023-08-16 Dovetail Genomics, LLC Tagging nucleic acids for sequence assembly
WO2016154540A1 (en) 2015-03-26 2016-09-29 Dovetail Genomics Llc Physical linkage preservation in dna storage
CA3014911A1 (en) 2016-02-23 2017-08-31 Dovetail Genomics, Llc Generation of phased read-sets for genome assembly and haplotype phasing
JP7497976B2 (ja) 2016-05-13 2024-06-11 ダブテイル ゲノミクス エルエルシー 保存されたサンプルからの長距離連鎖情報の回復
US20190234874A1 (en) 2016-07-19 2019-08-01 Altius Institute For Biomedical Sciences Methods for fluorescence imaging microscopy
CN106987629B (zh) * 2017-03-31 2021-01-15 上海市第一妇婴保健院 一种在单细胞水平上检测基因组上核小体排布的方法
WO2019018700A1 (en) 2017-07-19 2019-01-24 Altius Institute For Biomedical Sciences METHODS AND COMPOSITIONS FOR IN FLUORESCENCE FISH IN SITU NANO-HYBRIDIZATION
US12385161B2 (en) 2018-06-06 2025-08-12 Ramot At Tel-Aviv University Ltd. Multi-sample array chip for DNA modification quantification
GB2581152A (en) * 2019-02-05 2020-08-12 Univ Oxford Innovation Ltd Production of 3C library
CN112973592B (zh) * 2019-12-16 2022-12-09 天津大学 一种基于阵列式喷墨打印的高通量dna合成装置与方法

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5610053A (en) * 1993-04-07 1997-03-11 The United States Of America As Represented By The Department Of Health And Human Services DNA sequence which acts as a chromatin insulator element to protect expressed genes from cis-acting regulatory sequences in mammalian cells
US6165709A (en) * 1997-02-28 2000-12-26 Fred Hutchinson Cancer Research Center Methods for drug target screening
US5972608A (en) * 1997-08-27 1999-10-26 University Of Massachusetts Assays and reagents for chromatin remodeling enzymes and their modulators

Also Published As

Publication number Publication date
CA2460679A1 (en) 2003-11-20
EP1407053A4 (en) 2004-09-29
EP1407053A2 (en) 2004-04-14
US20030170689A1 (en) 2003-09-11
WO2003095608A2 (en) 2003-11-20
JP2005519635A (ja) 2005-07-07
WO2003095608A3 (en) 2004-02-12

Similar Documents

Publication Publication Date Title
CA2460679A1 (en) Dna microarrays comprising active chromatin elements and comprehensive profiling therewith
Oberley et al. High-throughput screening of chromatin immunoprecipitates using CpG-island microarrays
US6232067B1 (en) Adapter directed expression analysis
Gilbert Evaluating genome-scale approaches to eukaryotic DNA replication
US20040137473A1 (en) Use of representations of DNA for genetic analysis
US20020034753A1 (en) Novel assay for nucleic acid analysis
WO2005080604A2 (en) Genetic analysis by sequence-specific sorting
US6746844B2 (en) Determining signal transduction pathways
US20040014086A1 (en) Regulome arrays
WO2001073134A2 (en) Gene profiling arrays
WO2004046387A1 (en) Methods and compositions for analysis of regulatory sequences
US20070003929A1 (en) Method for identifying, analyzing and/or cloning nucleic acid isoforms
JP2002532070A (ja) 核酸配列を解析するためのアレイおよび方法
Tchernitsa et al. Effects of Ras signaling on gene expression analyzed by customized microarrays
WO2005058931A2 (en) Methods and algorithms for identifying genomic regulatory sites
WO2001083822A2 (en) Use of representations of dna for genetic analysis
WO2025162918A1 (en) A method for simultaneously or sequential detecting, counting, localizing genome sites and/or extra-genomic nucleic acid elements
Storck In vitro cloning of complex mixtures of DNA on microbeads: physical separation of differentially expressed cDNAs
Andersson et al. Shotgun sequencing and microarray analysis of RDA transcripts
WO2000014273A2 (en) Differential genetic display technique and vector
Seta et al. Gene expression microarrays: a platform for discovery in biological systems
Richter et al. Independent and complementary methods for large-scale structural
WO2004007768A1 (en) Method to analyze polymeric nucleic acid sequence variations
AU2002323192A1 (en) Method of labelling cRNAs for probing oligo-based microarrays

Legal Events

Date Code Title Description
TH Corrigenda

Free format text: IN VOL 18, NO 2, PAGE(S) 588 UNDER THE HEADING APPLICATIONS OPI NAME INDEX UNDER THE NAME STAMATOYANNOPOULOS, J., APPLICATION NO. 2002367838, UNDER INID (43) CORRECT THE PUBLICATION DATE TO READ 24.11.2003