AU2001264811A1 - Methods for genetic analysis of dna to detect sequence variances - Google Patents

Methods for genetic analysis of dna to detect sequence variances

Info

Publication number
AU2001264811A1
AU2001264811A1 AU2001264811A AU6481101A AU2001264811A1 AU 2001264811 A1 AU2001264811 A1 AU 2001264811A1 AU 2001264811 A AU2001264811 A AU 2001264811A AU 6481101 A AU6481101 A AU 6481101A AU 2001264811 A1 AU2001264811 A1 AU 2001264811A1
Authority
AU
Australia
Prior art keywords
dna
methods
genetic analysis
detect sequence
sequence variances
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001264811A
Other languages
English (en)
Inventor
Vincent P. Stanton Jr.
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Nuvelo Inc
Original Assignee
Variagenics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US09/696,998 external-priority patent/US6475736B1/en
Priority claimed from US09/697,028 external-priority patent/US7659054B1/en
Application filed by Variagenics Inc filed Critical Variagenics Inc
Publication of AU2001264811A1 publication Critical patent/AU2001264811A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B82—NANOTECHNOLOGY
    • B82Y—SPECIFIC USES OR APPLICATIONS OF NANOSTRUCTURES; MEASUREMENT OR ANALYSIS OF NANOSTRUCTURES; MANUFACTURE OR TREATMENT OF NANOSTRUCTURES
    • B82Y15/00—Nanotechnology for interacting, sensing or actuating, e.g. quantum dots as markers in protein assays or molecular motors
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
AU2001264811A 2000-05-23 2001-05-23 Methods for genetic analysis of dna to detect sequence variances Abandoned AU2001264811A1 (en)

Applications Claiming Priority (9)

Application Number Priority Date Filing Date Title
US20661300P 2000-05-23 2000-05-23
US60/206,613 2000-05-23
US69701300A 2000-10-25 2000-10-25
US09/697,013 2000-10-25
US09/697,028 2000-10-25
US09/696,998 US6475736B1 (en) 2000-05-23 2000-10-25 Methods for genetic analysis of DNA using biased amplification of polymorphic sites
US09/697,028 US7659054B1 (en) 2000-05-23 2000-10-25 Methods for genetic analysis of DNA to detect sequence variances
US09/696,998 2000-10-25
PCT/US2001/016577 WO2001090419A2 (fr) 2000-05-23 2001-05-23 Methodes d'analyse genetique d'adn servant a detecter des variances de sequence

Publications (1)

Publication Number Publication Date
AU2001264811A1 true AU2001264811A1 (en) 2001-12-03

Family

ID=27498617

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001264811A Abandoned AU2001264811A1 (en) 2000-05-23 2001-05-23 Methods for genetic analysis of dna to detect sequence variances

Country Status (5)

Country Link
EP (1) EP1364046B1 (fr)
JP (1) JP2004511210A (fr)
AU (1) AU2001264811A1 (fr)
CA (1) CA2409774A1 (fr)
WO (1) WO2001090419A2 (fr)

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WO2001042510A2 (fr) * 1999-12-10 2001-06-14 Trustees Of Princeton University Procede permettant d'isoler de maniere selective un acide nucleique
AU2002313683A1 (en) 2001-07-15 2003-03-03 Keck Graduate Institute Nucleic acid amplification using nicking agents
EP1409732A2 (fr) 2001-07-15 2004-04-21 Keck Graduate Institute Amplification de fragments d'acide nucleique au moyen d'agents de coupure
EP1465998A2 (fr) * 2002-01-08 2004-10-13 Bayer HealthCare AG Polymorphismes mononucleotidiques servant a predire une maladie cardiovasculaire et l'efficacite de medicaments
EP2192193A1 (fr) 2002-10-18 2010-06-02 Genematrix Inc. Procede de detection de mutations
WO2004081191A2 (fr) * 2003-03-12 2004-09-23 Cleveland State University Haplotypage moleculaire d'adn genomique
GB0406864D0 (en) 2004-03-26 2004-04-28 Qiagen As Nucleic acid sequencing
WO2006020617A1 (fr) 2004-08-09 2006-02-23 Generation Biotech, Llc Procede d'isolation et d'amplification d'acide nucleique
US11111544B2 (en) 2005-07-29 2021-09-07 Natera, Inc. System and method for cleaning noisy genetic data and determining chromosome copy number
US11111543B2 (en) 2005-07-29 2021-09-07 Natera, Inc. System and method for cleaning noisy genetic data and determining chromosome copy number
US10083273B2 (en) 2005-07-29 2018-09-25 Natera, Inc. System and method for cleaning noisy genetic data and determining chromosome copy number
US10081839B2 (en) 2005-07-29 2018-09-25 Natera, Inc System and method for cleaning noisy genetic data and determining chromosome copy number
US9424392B2 (en) 2005-11-26 2016-08-23 Natera, Inc. System and method for cleaning noisy genetic data from target individuals using genetic data from genetically related individuals
ES2620431T3 (es) 2008-08-04 2017-06-28 Natera, Inc. Métodos para la determinación de alelos y de ploidía
JP5626673B2 (ja) * 2009-03-12 2014-11-19 国立大学法人東京農工大学 ジンクフィンガーを用いた新規標識方法及び被検物質の測定方法
EP2854056A3 (fr) 2009-09-30 2015-06-03 Natera, Inc. Procédés pour une classification de ploïdie prénatale non invasive
US9677118B2 (en) 2014-04-21 2017-06-13 Natera, Inc. Methods for simultaneous amplification of target loci
US11326208B2 (en) 2010-05-18 2022-05-10 Natera, Inc. Methods for nested PCR amplification of cell-free DNA
US11939634B2 (en) 2010-05-18 2024-03-26 Natera, Inc. Methods for simultaneous amplification of target loci
US10179937B2 (en) 2014-04-21 2019-01-15 Natera, Inc. Detecting mutations and ploidy in chromosomal segments
US10316362B2 (en) 2010-05-18 2019-06-11 Natera, Inc. Methods for simultaneous amplification of target loci
US20190010543A1 (en) 2010-05-18 2019-01-10 Natera, Inc. Methods for simultaneous amplification of target loci
US11332785B2 (en) 2010-05-18 2022-05-17 Natera, Inc. Methods for non-invasive prenatal ploidy calling
US11339429B2 (en) 2010-05-18 2022-05-24 Natera, Inc. Methods for non-invasive prenatal ploidy calling
EP2854058A3 (fr) 2010-05-18 2015-10-28 Natera, Inc. Procédés pour une classification de ploïdie prénatale non invasive
US11332793B2 (en) 2010-05-18 2022-05-17 Natera, Inc. Methods for simultaneous amplification of target loci
US11408031B2 (en) 2010-05-18 2022-08-09 Natera, Inc. Methods for non-invasive prenatal paternity testing
US11322224B2 (en) 2010-05-18 2022-05-03 Natera, Inc. Methods for non-invasive prenatal ploidy calling
ES2770342T3 (es) 2010-12-22 2020-07-01 Natera Inc Procedimientos para pruebas prenatales no invasivas de paternidad
CN103608818B (zh) 2011-02-09 2017-12-08 纳特拉公司 非侵入性产前倍性识别装置
KR101890466B1 (ko) * 2012-07-24 2018-08-21 내테라, 인코포레이티드 고도의 다중 ｐｃｒ 방법 및 조성물
US9499870B2 (en) 2013-09-27 2016-11-22 Natera, Inc. Cell free DNA diagnostic testing standards
US10577655B2 (en) 2013-09-27 2020-03-03 Natera, Inc. Cell free DNA diagnostic testing standards
US10262755B2 (en) 2014-04-21 2019-04-16 Natera, Inc. Detecting cancer mutations and aneuploidy in chromosomal segments
CN104845967B (zh) * 2015-04-15 2020-12-11 苏州新海生物科技股份有限公司 寡聚核苷酸片段及使用其的选择性扩增目标核酸序列变异体的方法及应用
WO2016183106A1 (fr) 2015-05-11 2016-11-17 Natera, Inc. Procédés et compositions pour la détermination de la ploïdie
WO2018067517A1 (fr) 2016-10-04 2018-04-12 Natera, Inc. Procédés pour caractériser une variation de nombre de copies à l'aide d'un séquençage de ligature de proximité
US10011870B2 (en) 2016-12-07 2018-07-03 Natera, Inc. Compositions and methods for identifying nucleic acid molecules
US10894976B2 (en) 2017-02-21 2021-01-19 Natera, Inc. Compositions, methods, and kits for isolating nucleic acids
US11525159B2 (en) 2018-07-03 2022-12-13 Natera, Inc. Methods for detection of donor-derived cell-free DNA

Family Cites Families (11)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5527676A (en) * 1989-03-29 1996-06-18 The Johns Hopkins University Detection of loss of the wild-type P53 gene and kits therefor
CA2111503A1 (fr) * 1993-12-15 1995-06-16 Mcgill University Polymorphisme de l'apolipoproteine e et maladie d'alzheimer
GB9417211D0 (en) * 1994-08-25 1994-10-12 Solicitor For The Affairs Of H Nucleotide sequencing method
US5869242A (en) * 1995-09-18 1999-02-09 Myriad Genetics, Inc. Mass spectrometry to assess DNA sequence polymorphisms
CA2248084A1 (fr) * 1996-03-04 1997-09-12 Genetrace Systems, Inc. Methodes de criblage des acides nucleiques par spectrometrie de masse
WO1999040226A2 (fr) * 1998-02-04 1999-08-12 Perkin-Elmer Corporation Determination d'un genotype d'un produit d'amplification sur des sites alleliques multiples
WO1999053102A1 (fr) * 1998-04-16 1999-10-21 Packard Bioscience Company Analyse de sequence de polynucleotides
WO2000056925A2 (fr) * 1999-03-19 2000-09-28 Aclara Biosciences, Inc. Techniques de detection de polymorphismes nucleotidiques uniques
AU2001255403A1 (en) * 2000-04-14 2001-10-30 Genaissance Pharmaceuticals, Inc. Haplotypes of the apoe gene
EP1170379A1 (fr) * 2000-06-30 2002-01-09 Centre National de Genotypage Génération des échantillons pour déterminer le génotype par spectroscopie de masse
EP1176212A1 (fr) * 2000-07-24 2002-01-30 Centre National de Genotype Détermination des haplotypes par spectrométrie de masse

Also Published As

Publication number Publication date
EP1364046B1 (fr) 2011-11-30
CA2409774A1 (fr) 2001-11-29
JP2004511210A (ja) 2004-04-15
WO2001090419A9 (fr) 2003-11-13
EP1364046A2 (fr) 2003-11-26
WO2001090419A3 (fr) 2003-07-10
WO2001090419A2 (fr) 2001-11-29

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