WO2024055291A1 - Method for high-throughput screening of sirtuin mutant, sirtuin mutant, and use thereof - Google Patents

Method for high-throughput screening of sirtuin mutant, sirtuin mutant, and use thereof Download PDF

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WO2024055291A1
WO2024055291A1 PCT/CN2022/119322 CN2022119322W WO2024055291A1 WO 2024055291 A1 WO2024055291 A1 WO 2024055291A1 CN 2022119322 W CN2022119322 W CN 2022119322W WO 2024055291 A1 WO2024055291 A1 WO 2024055291A1
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sirtuin
mutant
amc
lysis
activity
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Chinese (zh)
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赵维
邹思维
蔡可祝
杨玉蛟
赵国屏
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中国科学院深圳先进技术研究院
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/01Preparation of mutants without inserting foreign genetic material therein; Screening processes therefor
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Definitions

  • the invention relates to the field of biotechnology, and in particular to a method for high-throughput screening of sirtuin mutants, sirtuin mutants and their applications.
  • Sirtuin is a type of protein deacylase that uses NAD+ as a substrate. It is widely present in three domains of life systems: bacteria, archaea, and eukaryotes. It participates in the regulation of gene transcription, chromosome segregation, RNA shearing, cell metabolism, and apoptosis. A series of important biological processes such as death and energy metabolism. In addition to deacetylase activity, sirtuin has also been reported to have other enzymatic activities, such as desuccinylation, demyristoylation, and denonanoylase activities.
  • sirtuin deacylation is closely related to obesity, aging, cancer, neurodegeneration and cardiovascular diseases.
  • crystal structures of sirtuin in different species such as humans, yeast and E. coli, have been solved.
  • the key regulatory sites of sirtuin deacylase activity are currently not fully understood.
  • no drugs targeting sirtuin have been approved for marketing so far.
  • the reason is largely due to the lack of an efficient and accurate detection method for sirtuin enzyme activity.
  • the main methods for detecting sirtuin enzyme activity include isotope labeling, immunoblotting, high-performance liquid chromatography and fluorescence.
  • isotope labeling methods are no longer commonly used due to cumbersome operations and potential safety.
  • Western blotting and high-performance liquid chromatography are only suitable for routine in vitro enzyme activity characterization.
  • coumarin-based fluorescence methods and FRET-based fluorescence methods are It can be used to measure sirtuin enzyme activity on a large scale, but current research still requires in vitro expression and purification to obtain sirtuin protein, which requires a large workload.
  • Direct cleavage of sirtuin after synthesis in vivo often results in inactivation of the enzyme, which limits the use of these methods at high temperatures.
  • sirtuin mutant and its application are also provided.
  • a method for screening sirtuin mutants including the following steps:
  • Each mutant in the sirtuin mutant library is lysed, solid-liquid separation is performed, and the lysis supernatant is collected;
  • the AMC fluorescence method is used to measure the sirtuin deacylation activity of the lysis supernatant in a high-throughput manner, and a sirtuin mutant strain with the required deacylation activity is obtained.
  • sirtuin mutants In the above screening method for sirtuin mutants, error-prone PCR technology is used to obtain a library of sirtuin protein mutants, and then the heterologously expressed sirtuin protein mutants are lysed to obtain a crude enzyme solution, and then a method based on the release of AMC fluorescent groups is used.
  • the in-site detection of deacylation activity of sirtuin mutants mainly includes three steps of library construction, lysis and detection. High-throughput screening of sirtuin protein mutants can be carried out. The steps are simple. Sirtuin synthesized in vivo is directly cleaved through lysis to release the fluorescence of AMC.
  • this method is universal and can screen different sirtuins for enzyme activity, and is not limited to the specific functions of sirtuins in specific environments; more importantly, this method combines error-prone PCR and AMC fluorescence methods.
  • This method combines error-prone PCR and AMC fluorescence methods.
  • high-throughput screening of artificial sirtuin mutants is possible.
  • deacylase sirtuin mutants can be screened in a simple, universal, sensitive and high-throughput manner.
  • an initial sirtuin gene is used to construct the sirtuin mutant library.
  • the initial sirtuin gene includes connected critical region fragments and non-critical region fragments.
  • the steps of constructing the sirtuin mutant library include:
  • an expression vector fragment is obtained.
  • the expression vector is used to express the initial sirtuin.
  • the expression vector fragment is used to express the sirtuin protein.
  • the expression and replication originals are composed of the plasmid carrying the expression vector and the resistance gene of the plasmid carrying the initial sirtuin gene is different;
  • mutant fragment and the expression vector fragment are recombinantly ligated and then transferred into host cells to obtain the sirtuin mutant library.
  • a first primer pair is used to perform error-prone PCR, and the sequences of the first primer pair are as shown in SEQ ID No. 1 to SEQ ID No. 2.
  • a second primer pair is used to perform PCR amplification
  • the third primer pair is used for PCR amplification.
  • the sequences of the two primer pairs are shown in SEQ ID No. 3 ⁇ SEQ ID No. 4.
  • a mutant library with 10-fold coverage can be constructed to screen out the amino acid sites in the critical region of sirtuin, where the mutation The body bank has 2,000-6,000 clones.
  • a cell lysis solution is used for lysis, and the cell lysis solution includes: a non-denaturing detergent and a buffer with a pH of 7 to 8, so The volume ratio of the cell lysis solution to the bacterial solution containing the cells to be tested is 1:20-1:40, the lysis temperature is 20°C-30°C, and the lysis time is 10min-20min.
  • the step of using the AMC fluorescence method to determine the sirtuin deacylation activity of the lysis supernatant includes:
  • the AMC peptide reaction solution contains the AMC peptide with acyl modification, so The final concentration of the AMC peptide is 100 ⁇ M ⁇ 500 ⁇ M;
  • the stop solution includes 2.0mg/mL to 5.0mg/mL trypsin, 2 ⁇ Tris buffer containing 2mM ⁇ 6mM NAM;
  • the fluorescence intensity of the second treatment solution is detected at an excitation wavelength of 360 nm and an emission wavelength of 460 nm, and the deacylase activity of sirtuin in the cells to be tested is determined based on the fluorescence intensity of the second treatment solution.
  • the acyl modification in the AMC peptide with acyl modification is acetyl modification, succinyl modification, myristoyl modification, nonanoyl modification or long-chain fatty acyl modification.
  • the AMC peptide is a lysine acylation-modified peptide with a BOC protection group and AMC label.
  • a sirtuin mutant is prepared by the above-mentioned screening method for sirtuin mutants.
  • it is obtained by mutating at least one of the following sites of wild-type sirtuin: alanine at position 76, phenylalanine at position 91, histidine at position 147, histidine at position 155 cysteine at position 185 and proline at position 185.
  • alanine at position 76 undergoes one of the following mutations: A76P, A76V;
  • the phenylalanine at position 91 has one of the following mutations: F91L, F91S;
  • Histidine at position 147 has one of the following mutations: H147L, H147Y;
  • the cysteine at position 155 has one of the following mutations: C155R, C155S, C155Y;
  • the proline at position 185 has one of the following mutations: P185L, P185T.
  • Figure 1 is the schematic diagram of AMC fluorescence detection
  • Figure 2 is a flow chart of mutant library construction
  • Figure 3 shows the gel electrophoresis pattern of the mutant fragments and backbone fragments
  • Figure 4 is a diagram of the sequencing results in Example 1.
  • Figure 5 is a gel electrophoresis diagram of the lysis supernatant
  • Figure 6 shows the fluorescence detection results of the reaction between BL21 cleavage products and peptide fragments
  • Figure 7 shows the fluorescence detection results of the reaction between purified sirtuin protein or sirtuin-containing cell lysate supernatant and substrate;
  • Figure 8 is an example of the fluorescence detection results of the mutant library
  • Figure 9 is a fluorescence detection mutant library enzyme activity and site information diagram
  • Figure 10 is an analysis diagram of the regulatory sites of sirtuin enzyme activity
  • Figure 11 shows the fluorescence detection results of the reaction between cell lysate and AMC-peptide Ac or AMC-peptide Su peptide segments
  • Figure 12 shows the effect of lysate on the enzyme activities of STM1221 and SIRT2.
  • One embodiment of the present application provides a method for screening sirtuin mutants, including the following steps S210 to S230:
  • Error-prone PCR is a method used to construct a library of random point mutants of proteins. It uses low-fidelity DNA polymerase in PCR and adjusts PCR reaction conditions to reduce the accuracy of DNA replication. This enables point mutations in genes. After a mutation is introduced into a gene, the corresponding amino acid changes, thereby affecting the structure and function of the target protein. Error-prone PCR produces a large number of mutation products that are cloned and ligated into expression vectors to generate a library of random point mutants of the target protein. The use of error-prone PCR can expand the size of the mutant library, increase its coverage, and improve screening accuracy.
  • an initial sirtuin gene is used to construct a sirtuin mutant library, and the initial sirtuin gene includes connected critical region fragments and non-critical region fragments.
  • the initial sirtuin is the sirtuin that needs to be mutated.
  • the initial sirtuin is not limited and can be a wild-type sirtuin or other sirtuin that has been mutated and needs to be mutated again.
  • the key region is the region where active sites (i.e., sites that affect enzyme activity) may exist.
  • Active sites i.e., sites that affect enzyme activity
  • Non-critical areas are areas other than critical areas.
  • Figure 2 is a flow chart of mutant library construction
  • the steps of constructing a sirtuin mutant library using error-prone PCR technology include S211 to S213:
  • the mutated fragments are key region fragments with 1 to 4 point mutations. It should be noted that by controlling the template amount of error-prone PCR, DNA fragments in the key region of sirtuin with 1-4 point mutations in each product can be amplified.
  • the plasmid carrying the initial sirtuin gene is the pET28a-sirtuin plasmid with kanamycin (Kanamycin, Kan) resistance.
  • This plasmid is capable of expressing the original sirtuin.
  • the first primer pair is used to perform error-prone PCR.
  • the sequence of the first primer pair is shown as SEQ ID No.1 ⁇ SEQ ID No.2.
  • the sequence shown in SEQ ID No. 1 is ggaaatgatggaaaacccaaga.
  • the sequence shown in SEQ ID No. 2 is ccgacttggcttggctcaag.
  • EP-PCR system formula is shown in Table 2.
  • pET28a-sirtuin plasmid was used as a template
  • random mutation PCR enzyme GeneMorph II Random Mutagenesis Kit, Agilent
  • sirtuin with 1-4 point mutations in each product was amplified by controlling the template amount.
  • DNA fragments in critical regions i.e., mutated fragments).
  • an expression vector fragment is obtained.
  • the expression vector is used to express the initial sirtuin.
  • the expression vector fragment is composed of expression and replication elements for expressing the sirtuin protein.
  • the resistance gene of the plasmid carrying the expression vector is different from that of the plasmid carrying the initial sirtuin gene.
  • the plasmid carrying the expression vector is pTEV5-sirtuin plasmid with ampicillin (Ampiciline, Amp) resistance.
  • This plasmid is capable of expressing the original sirtuin.
  • a second primer pair is used to perform PCR amplification.
  • the sequence of the second primer pair is shown in SEQ ID No. 3 ⁇ SEQ ID No. 4.
  • the sequence shown in SEQ ID No. 3 is cttgagccaagccaagtcgg.
  • the sequence shown in SEQ ID No. 4 is tcttgggttttccatcatttcc.
  • pTEV5-sirtuin was used as a template
  • a high-fidelity enzyme was used to amplify the fragments of sirtuin except the critical region together with the expression vector, and the template was eliminated with DpnI to obtain the vector fragment.
  • S211 and S212 is not limited. S211 can be performed first and then S212, S212 can be performed first and then S211, or S211 and S212 can be performed at the same time.
  • recombinase is used to connect the mutant fragment and the expression vector fragment.
  • the host cell is a competent host cell. Specifically, it can be competent DH5 ⁇ or competent BL21, or other competent host cells.
  • the PCR product fragment is purified, ligated and transformed into a DH5 ⁇ competent state by recombinase, and ampicillin resistance is used to screen out positive clones, that is, target clones. Pick about 10 clones, sequence them, check whether random point mutations occur in key regions and whether the number of mutations meets the requirements, and adjust the initial template concentration based on the results to make the obtained clones reach the desired mutation frequency.
  • this protocol first transforms the recombinant products into DH5 ⁇ , then extracts plasmids from DH5 ⁇ mixed plaques and transforms them into BL21 middle.
  • the BL21 clones that successfully grew on the ampicillin plate were randomly selected and sequenced to check whether the mutation results were as expected. It should be noted that if the fragment ligation product can be directly transferred into BL21, the step of transferring into DH5 ⁇ can be omitted.
  • the enzyme used to perform error-prone PCR mutagenesis of the selected sirtuin gene to establish a sirtuin mutant library is the enzyme in Agilent's GeneMorph II Random Mutagenesis Kit.
  • Each mutant in the sirtuin mutant library is lysed, solid-liquid separation is performed, and the lysis supernatant is collected.
  • cell lysis solution is used for lysis, and the cell lysis solution includes: non-denaturing detergent and buffer solution with pH 7-8.
  • the cell lysate can lyse cells containing sirtuin, and the obtained lysate can be used for AMC fluorescence detection of sirtuin deacylase activity without purification.
  • the cell lysis solution includes a non-denaturing detergent with a mass percentage of 0.5% to 2%, a salt substance of 100mM to 200mM, and a buffer with a pH of 7 to 8.
  • non-denaturing detergents with a mass percentage of 0.5% to 2%, salts from 100mM to 200mM, and buffers with a pH of 7 to 8 can lyse cells containing sirtuin, yielding
  • the cleavage product can be used for AMC fluorescence detection of sirtuin deacylase activity without purification. It is simple to operate and can screen different sirtuins for enzyme activity. It is not limited to the specific functions of sirtuins in specific environments. It has been verified through experiments that the cells were lysed using the cell lysate in this study.
  • the BL21 cell lysates transformed with STM1221 reacted with AMC peptides to produce fluorescence, while the BL21 cell lysates not transformed with STM1221 showed no fluorescence when mixed with AMC peptides.
  • enzyme activity detection has strong specificity.
  • the non-denaturing detergent is at least one of NP-40 (ie, ethylphenyl polyethylene glycol), sodium oxycholate and Triton X-100 (polyethylene glycol octyl phenyl ether).
  • NP-40 ie, ethylphenyl polyethylene glycol
  • Triton X-100 polyethylene glycol octyl phenyl ether
  • the addition of non-denaturing detergent can gently lyse cells and reduce the impact on the activity of released intracellular enzymes.
  • the mass percentage of the non-denaturing detergent is 0.5% to 2%.
  • the mass percentage of the non-denaturing detergent is 0.5% to 1.5%.
  • the buffer is 25mM ⁇ 50mM Tris-HCl buffer. This buffer can both assist in cell lysis and protect the activity of enzymes released by cell lysis.
  • the salt substance is NaCl or KCl.
  • Sodium chloride and potassium chloride can make the solution reach a certain concentration, maintain osmotic pressure, and ensure a certain ionic strength to stabilize proteins.
  • NaCl the same ingredient as physiological saline, is used.
  • the cell lysis solution includes: NP-40 with a mass percentage of 1%, 150mM NaCl, pH7.6, and 25mM Tris-HCl buffer. This cell lysis solution can gently lyse cells and reduce the impact on the activity of released intracellular enzymes.
  • the steps of using cell lysis solution to lyse the sirtuin mutant library include: mixing the cell lysate and the bacterial solution containing the sirtuin mutant library cells in a ratio of 1:20 to 1:40, and lysing at a temperature of 20°C to 30°C. Shake at 300rpm for 10min ⁇ 20min.
  • the solid-liquid separation method is centrifugation.
  • the centrifugation conditions are 4000 rpm and 4°C for 10 minutes. It should be noted that the solid-liquid separation method is not limited to centrifugation, and can also be other solid-liquid separation methods, such as filtration.
  • step S220 includes: picking the BL21 clone into a 96-well plate for culture, and shaking the culture at 37°C and 800 rpm overnight. After that, transfer the saturated bacterial solution 1:20 to a new 96-well plate and continue shaking the bacteria. After about 1.5-2 hours, the OD reaches 0.4. At this time, IPTG with a final concentration of 0.3mM was added to induce sirtuin protein expression at 25°C. After 16 hours, centrifuge the well plate at 4000 rpm and 4°C for 10 minutes to collect bacteria. Then, add 10 ⁇ L of mild cell lysis solution to each well of the 96-well plate.
  • the active ingredient of the lysis solution is 25mM Tris-HCl buffer (pH 7.6) containing non-denaturing detergent. Shake at 300 rpm for 10 min to obtain cell lysate. Finally, centrifuge at 4000 rpm and 4°C for 10 min to obtain the lysis supernatant containing the target sirtuin protein.
  • AMC 7-amino-4-methylcoumarin
  • AMC fluorescence method to measure sirtuin enzyme activity
  • the coumarin amine of AMC is condensed with the carboxyl group of the C-terminal lysine residue of the polypeptide molecule to form an amide bond
  • the AMC-modified polypeptide molecule is synthesized (the detection principle of the AMC fluorescence method is shown in the figure shown in 1).
  • steps of S230 include S231-S233:
  • the AMC peptide reaction solution contains acyl-modified AMC peptides.
  • the final concentration of AMC peptide is 100 ⁇ M ⁇ 500 ⁇ M. Specifically, the final concentration of AMC peptide was 200 ⁇ M.
  • the volume ratio of AMC peptide reaction solution and lysis supernatant is 1:1. This volume ratio facilitates sampling and loading.
  • the AMC peptide is a synthetic lysine acylation-modified peptide with a BOC protection group and AMC label.
  • the acyl modification in the AMC peptide with acyl modification is acetyl modification, succinyl modification, myristoyl modification, nonanoyl modification or long-chain fatty acyl modification.
  • the different deacylase activities of sirtuin can be measured using AMC peptides with different acyl modifications.
  • the acyl modification is not limited to the above-mentioned acyl modifications, and can also be other acyl modifications.
  • AMC-peptide peptides with different acyl modifications can be used according to the deacylase activity measured as needed.
  • the AMC peptide with acyl modification is AMC-peptide Ac (i.e., acetyl-modified AMC-peptide peptide).
  • the specific steps of S231 are: add 10 ⁇ L of reaction solution containing AMC-peptide Ac to each well of the 384-well plate, including 2 ⁇ L of 10 ⁇ Tris buffer (0.5M Tris-HCl, pH8.0, 1.37M NaCl, 27mM KCl, 10mM MgCl 2 ), 1 ⁇ L 20mM NAD + , 0.8 ⁇ L 5mM AMC-peptide Ac , 6.2 ⁇ L ddH 2 O.
  • the volume ratio of the first treatment solution to the stop solution is 1:1. This volume ratio facilitates sampling and loading.
  • the stop solution includes 2.0mg/mL ⁇ 5.0mg/mL trypsin and 2 ⁇ Tris buffer containing 2mM ⁇ 6mM NAM.
  • the tool for detecting fluorescence intensity is a microplate reader. It should be noted that the tool for detecting fluorescence intensity is not limited to a microplate reader, and may also be other tools capable of detecting fluorescence intensity, such as a fluorescence photometer.
  • the BL21 lysate transferred into the blank plasmid is used as a negative control
  • the BL21 lysate transferred into the wild-type pTEV5-sirtuin plasmid is used as the positive control.
  • the fluorescence intensity is directly proportional to the deacetylase activity of sirtuin protein. Therefore, the deacetylation activity of sirtuin can be quantitatively detected based on this proportional relationship.
  • the standard curve method is used for quantitative detection.
  • sirtuin mutant strain with the required deacylation activity
  • a mutant library with 10-fold coverage (screening 2,000-6,000 clones) can be constructed to screen for sirtuin amino acid sites in all key regions, where , the mutant library has 2,000-6,000 clones.
  • the above-mentioned screening method for sirtuin mutants can easily, high-throughput, and reproducibly screen artificial mutants of deacylase sirtuin.
  • Error-prone PCR was used to obtain random point mutation fragments of sirtuin protein coding DNA, and the recombinant plasmid was constructed and transformed into E. coli to obtain a sirtuin protein mutant library.
  • the optimized mild cell lysis solution was used to lyse the heterologously expressed sirtuin protein mutant in a 96-well plate and obtain crude enzyme solution.
  • the deacylation activity of sirtuin mutants was detected in situ using a method based on the release of AMC fluorophores.
  • this method mainly includes three steps: library construction, lysis and detection.
  • High-throughput screening of sirtuin protein mutants can be carried out through 96-well plate culture to induce sirtuin protein and microplate reader fluorescence detection.
  • the main feature of this method is that the steps are simple, and the optimized cell lysis solution allows the sirtuin synthesized in the body to be directly cleaved and released for detection by the AMC fluorescence method; moreover, the method is universal and can screen different sirtuins for enzyme activity without limitation.
  • sirtuin deacylation activity Due to the specific functions of sirtuin in specific environments; more importantly, this method combines error-prone PCR and AMC fluorescence methods to enable high-throughput screening of sirtuin artificial mutations through the seamless connection of bacterial protein expression-lysis-detection. body becomes possible. Subsequent sequencing of sirtuin mutants will provide information on mutation sites, which can analyze the relationship between site mutations and changes in enzyme activity, and predict and verify key sites for sirtuin deacylation activity.
  • AMC fluorescence detection is mostly used to detect the enzyme activity of a single sirtuin, or to screen the substrates and inhibitors corresponding to sirtuin through high-throughput in vitro enzyme activity detection.
  • sirtuin proteins cannot be expressed and purified in vitro, the direct cleavage and release of sirtuin after synthesis in vivo often results in the inactivation of subsequent reaction enzymes, and protein purification and other processes are required before enzyme activity detection can be carried out.
  • This application uses cell lysis solution to gently lyse sirtuin mutants.
  • the obtained cleavage product can be used for AMC fluorescence detection of sirtuin deacylase activity without purification.
  • the operation is simple and can screen different sirtuins for enzyme activity. It is not limited to It is based on the specific functions that sirtuin performs in a specific environment.
  • the present invention organically combines error-prone PCR for library construction and AMC fluorescence method for enzyme activity detection, obtains a random mutant library with controllable frequency through molecular cloning, expresses the protein and obtains enzyme activity information through in-situ detection, thereby constructing a complete set of
  • the sirtuin mutant screening system is simple, reliable and has high throughput. It can screen and discover the deacylation active regulatory site of sirtuin protein in a simple and high-throughput method, providing a basis for subsequent research on the structure and function of sirtuin.
  • This method screens sirtuin enzymatic activity mutants, performs in situ expression and activity measurement in E. coli, minus the tedious protein purification and transfer process, and is very simple; moreover, the use of different acylation modified peptides can be used to test the activity of sirtuin
  • This method can be used to screen different sirtuins for enzyme activity based on different deacylase activities, and is universal.
  • this method combines error-prone PCR and AMC fluorescence methods, and can simultaneously measure multiple proteins in large batches. Test results can be quantified.
  • the method in this study has the advantages of simplicity, universality, and high throughput.
  • One embodiment of the present application also provides a sirtuin mutant, which is prepared by the above-mentioned screening method for sirtuin mutants.
  • This sirtuin mutant can be used to alter deacylase activity.
  • alanine at position 76 undergoes one of the following mutations: A76P, A76V.
  • the phenylalanine at position 91 has one of the following mutations: F91L, F91S.
  • the histidine at position 147 has one of the following mutations: H147L, H147Y.
  • the cysteine at position 155 has one of the following mutations: C155R, C155S, or C155Y.
  • the proline at position 185 has one of the following mutations: P185L, P185T.
  • the reagents and instruments used in the examples are conventional choices in the art. Experimental methods that do not indicate specific conditions in the examples are usually implemented according to conventional conditions, such as conditions described in literature and books or methods recommended by kit manufacturers. The reagents used in the examples are all commercially available.
  • sirtuin protein STM1221 derived from Salmonella was selected as an example, and random point mutations were carried out in its specific site region (V43-N240) to obtain a random point mutant library with 1-3 mutated amino acids.
  • the specific operations are as follows:
  • the sirtuin protein STM1221 has high deacetylase activity.
  • the V43-N240 segment was selected as a possible active site gene fragment. This gene was constructed into the Kan-resistant pET28a-STM1221 plasmid, and amplified by EP-PCR (error-prone PCR) using the first primer pair (sequences shown in SEQ ID No. 1 ⁇ SEQ ID No. 2) The DNA fragment of the key region of STM1221 with 2-4 point mutations in each product (referred to as the mutation fragment) was obtained.
  • pTEV5-STM1221 was used as a template, and the second primer pair (sequences are shown in SEQ ID No.
  • FIG. 4 is a gel electrophoresis diagram of fragment and vector PCR products, in which band 1 represents the mutant fragment, band 2 represents the vector fragment, and band 3 is the 1.1 kb standard.
  • the primers used in PCR are detailed in Table 1.
  • the EP-PCR system formula is detailed in Table 2.
  • step (1) of this example to lyse the induced bacterial liquid of E. coli BL21 transformed with pTEV5-SIRT2 plasmid according to the same method to obtain a lysed supernatant containing SIRT2 protein, and conduct lysis on the lysed supernatant.
  • Gel electrophoresis imaging The gel electrophoresis pattern of the lysis supernatant is shown in Figure 5 for details.
  • Figure 5 takes SIRT2 protein as an example.
  • band 1 is the marker
  • bands 2 and 3 are the protein bands of the supernatant of the lysate induced by 0mM IPTG
  • bands 4 and 5 are the protein bands of the supernatant of the lysate induced by 0.3mM IPTG for 16 hours.
  • the supernatant of the BL21 cell lysate after IPTG induction can clearly show the target band of SIRT2, proving that this method can release the intracellular protein, namely sirtuin, into the supernatant.
  • reaction solution containing AMC-peptide Ac substrate to each well of the 384-well plate, including 2 ⁇ L of 10 ⁇ Tris buffer (0.5M Tris-HCl, pH 8.0, 1.37M NaCl, 27mM KCl, 10mM MgCl 2 ), 1 ⁇ L 20mM NAD + , 0.8 ⁇ L 5mM AMC-peptide Ac , 6.2 ⁇ L ddH 2 O. After that, add 10 ⁇ L of STM1221 or SIRT2 protein solution diluted with ddH 2 O or lysis buffer. The total volume of the reaction system is 20 ⁇ L.
  • the final concentration of Tris is 50mM, the final concentration of NAD + is 1mM, the final concentration of the peptide is 200 ⁇ M, and the final concentration of sirtuin protein is 20 ⁇ L. is 5 ⁇ M.
  • a microplate reader was used to detect the fluorescence intensity at 360nm excitation and 460nm emission wavelengths, and the reaction system without sirtuin was used as a negative control.
  • the measurement results are detailed in Figure 12.
  • Figure 12 shows the effect of lysate on the enzyme activities of STM1221 and SIRT2.
  • Example 2 yielded approximately 80 mutant proteins per 96-well plate. Therefore, by expanding the number of culture colonies, a total of 1,000 STM1221 mutant libraries were obtained in 12 96-well plates.
  • the AMC-ARK Ac peptide used for subsequent detection i.e., the AMC-labeled peptide modified by acetylation was synthesized by Anhui Guoping Pharmaceutical Co., Ltd.
  • BL21 transformed with wild-type STM1221 was first used to conduct lysis and enzyme activity detection experiments.
  • the BL21 bacteria were lysed using the cell lysis solution (i.e., lysis buffer) used in Example 2, and the lysate product was used to detect sirtuin activity.
  • the cleavage products were directly taken for AMC fluorescence detection, but the cleavage products of BL21 in the negative control group also reacted with the peptides to produce fluorescence, and no longer reacted after heat inactivation, proving that there may be other components in the cell fragments of BL21. Enzymes can interfere.
  • sirtuin protein or the protein-containing lysate supernatant from the previous step add 10 ⁇ L of purified sirtuin protein or the protein-containing lysate supernatant from the previous step.
  • 2L E. coli BL21 for cell lysis.
  • the final lysis can obtain at least 1 mL of sirtuin protein with a concentration of 100 ⁇ M. If the culture system is reduced to a 96-well plate, 200 ⁇ L of bacterial solution can obtain at least 10 ⁇ L of protein with a concentration of 1 ⁇ M. Therefore, purified STM1221 protein with an initial concentration of 1 ⁇ M or 5 ⁇ M was selected as a comparison.
  • SIRT2 protein also has strong deacetylation ability
  • purified SIRT2 or BL21-SIRT2 cleavage product was added as a control.
  • the total reaction volume was 20 ⁇ L, and the final peptide concentration was 200 ⁇ M. 37°C, 300rpm shaking reaction for 1h.
  • 20 ⁇ L of 2 ⁇ stop solution 2.0 mg/mL trypsin, 4 mM NAM in Tris assay buffer
  • was added to each well and the reaction was allowed to stand at 25°C for 1.5 h.
  • use a microplate reader to detect the fluorescence intensity at 360nm excitation and 460nm emission wavelengths. The measurement results are shown in Table 4 and Figure 7.
  • Table 4 shows the values of each mutant strain detected by AMC fluorescence, taking a 96-well plate as an example.
  • Figure 7 shows the fluorescence detection results of the reaction between purified sirtuin protein or sirtuin-containing cell lysate supernatant and substrate.
  • the fluorescence intensity of the reaction product is proportional to the deacetylase activity of sirtuin.
  • the BL21 lysate transferred into the blank plasmid is used as a negative control, and the BL21 lysate transferred into the wild-type pTEV5-STM1221 plasmid is used as a positive control.
  • the 12 established above are detected.
  • the deacetylation activity of STM1221 was preliminarily quantified, and 480 cloned strains with large changes in enzyme activity were obtained.
  • An example of the fluorescence detection results of the mutant library is shown in Figure 8. In Figure 8, the shades of gray represent fluorescence intensity, and the last column is the BL21 negative control (4 wells) and W.T.STM1221 positive control (4 wells).
  • STM1221 clones with deacetylase activity reduced by more than 80% were selected for sequencing, about 500 clones, and after excluding clones with more than 5 point mutations in a single clone, 176 mutation sites were obtained.
  • Table 5 shows some mutant sites and fluorescence detection results, which are single-point clones detected by sequencing in the same batch of experiments.
  • two single point mutants STM1221-H147L and STM1221-H147Y, were obtained through random mutation.
  • the enzyme activity fluorescence detection results are shown in Figure 9.
  • the deacetylation ability is reduced. to be equivalent to the negative control.
  • the H147 site in STM1221 has been confirmed to be an absolutely conserved site in the sirtuin protein that determines the deacylation activity. Therefore, the successful mutation of this site and the complete disappearance of the enzyme activity was detected, which proves the feasibility of this method to screen mutants. .
  • FIG. 9 shows the enzyme activity and site information of the fluorescence detection mutant library.
  • picture a is the result of fluorescence detection of the mutant library
  • picture b is the result of repeated fluorescence detection of the mutant library.
  • the point mutation information was obtained by sequencing the clones whose fluorescence was greatly reduced, and these clones were induced to express again in BL21, and the fluorescence was detected by lysing.
  • Figure 9b which is consistent with the first detection. It can be seen that the mutation was detected by fluorescence. The accuracy is higher and the repeatability is better.
  • Figure 10 is an analysis diagram of the regulatory sites of sirtuin enzyme activity.
  • the former site determines the deacetylation activity of STM1221 bigger. Therefore, score information is obtained based on the weight of the mutation site, and the score information of the amino acid site is obtained. The higher the score, the greater its determining role in the active site. It can be speculated from the site information that amino acids such as W67, V75, and H227 in STM1221 may play a decisive role in its deacetylation activity.
  • amino acids such as W67, V75, and H227 in STM1221 may play a decisive role in its deacetylation activity.
  • the corresponding amino acid sites in other typical sirtuins such as human SIRT2, SIRT5, and E. coli cobB were found for mutation and the active site was verified.
  • Sirtuin is a type of enzyme with multiple deacylation activities. It can not only remove the acetyl group on lysine, but also remove succinyl, crotonyl, long-chain fatty acyl, etc. Synthesizing AMC-peptide Acy peptides with different acyl modifications on lysine can be used to detect other deacylation activities of sirtuin proteins and obtain other deacylation active site information. Therefore, the method used in this application is not limited to the detection of deacetylation activity, and can also be applied to the detection of other deacylation activities of sirtuin, which should be included in the protection scope of the present invention.
  • the succinylated AMC-peptide Su peptide segment was synthesized according to the same method as the previous example, and reacted with the cell lysate transformed with the sirtuin protein expression vector to produce fluorescence.
  • the measurement results are detailed in Figure 11.
  • Figure 11 shows the fluorescence detection results of the reaction between cell lysate and AMC-peptide Ac or AMC-peptide Su peptide segments.
  • the BL21 lysate transformed with blank plasmid pUC19 did not react with any acylated peptides.
  • STM1221 which has multiple activities, can react with two peptides to produce fluorescence.
  • the cleavage solution of deacetylase SIRT2 only reacts with AMC-peptide Ac , while the cleavage product of desuccinylase SIRT5 reacts with AMC-peptide Su and produces strong fluorescence. Fluorescence, demonstrating the reaction specificity of these substrates, can be used to detect other enzyme activities, characterize other mutant libraries, and obtain other deacylated active site information.

Abstract

The present invention relates to a sirtuin mutant, a method for high-throughput screening of a sirtuin mutant, and use. The screening method for a sirtuin mutant comprises the following steps: constructing a sirtuin mutant library using an error-prone PCR technology; lysing each mutant in the sirtuin mutant library, carrying out solid-liquid separation, and collecting a lysate supernatant; and determining the deacylation activity of sirtuin in the lysate supernatant using an AMC fluorescence method, and obtaining a sirtuin mutant strain with the required deacylation activity. By using the screening method for a sirtuin mutant, a mutant of the deacylation enzyme sirtuin can be simply, conveniently, and repeatedly selected using a high throughput method.

Description

高通量筛选sirtuin突变体的方法及sirtuin突变体和其应用Methods for high-throughput screening of sirtuin mutants and sirtuin mutants and their applications 技术领域Technical field
本发明涉及生物技术领域,特别是涉及一种高通量筛选sirtuin突变体的方法及sirtuin突变体和其应用。The invention relates to the field of biotechnology, and in particular to a method for high-throughput screening of sirtuin mutants, sirtuin mutants and their applications.
背景技术Background technique
Sirtuin是一类以NAD+为底物的蛋白去酰基化酶,广泛存在于细菌、古菌和真核生物三域生命系统,参与调控了基因转录、染色体分离、RNA剪切、细胞代谢、细胞凋亡、能量代谢等一系列重要的生物学进程。除了去乙酰化酶活,sirtuin还被报道具有其他酶活性,如去琥珀酰化、去肉豆蔻酰化和去壬酰基化酶活等。Sirtuin is a type of protein deacylase that uses NAD+ as a substrate. It is widely present in three domains of life systems: bacteria, archaea, and eukaryotes. It participates in the regulation of gene transcription, chromosome segregation, RNA shearing, cell metabolism, and apoptosis. A series of important biological processes such as death and energy metabolism. In addition to deacetylase activity, sirtuin has also been reported to have other enzymatic activities, such as desuccinylation, demyristoylation, and denonanoylase activities.
Sirtuin去酰基化调控与肥胖、衰老、癌症、神经退行性病变以及心血管疾病等密切相关。近年来,sirtuin在不同物种,如人,酵母和大肠杆菌中的晶体结构相继被解析。然而,由于缺乏对sirtuin酶活分子机制的系统性了解,sirtuin去酰基化酶活的关键调控位点目前并不完全清楚。而且,迄今为止也未有靶向sirtuin的药物获批上市。究其原因,很大一方面是由于缺乏一种针对sirtuin酶活的高效、准确的检测方法。目前,sirtuin酶活检测方法主要有同位素标记法、免疫印迹法、高效液相色谱法和荧光法。其中,同位素标记法由于操作繁琐和潜在的安全性已不常用,免疫印迹法和高效液相色谱法只适用于常规的体外酶活表征,基于香豆素的荧光法和基于FRET的荧光法虽可应用于大规模测定sirtuin酶活,但目前的研究仍需要体外表达纯化获得sirtuin蛋白,工作量较大,而体内合成sirtuin后直接裂解又往往造成酶的失活,从而限制了这些方法在高通量酶活检测上的直接应用。当前,荧光法仅应用于sirtuin蛋白抑制剂或激活剂在体外的大规模筛选。因此,开发一种高通量的针对sirtuin去酰基化酶活的筛选方法,是目前的技术难点,也是深入研究sirtuin酶活特异性和发现其体内功能调控的前提基础。The regulation of Sirtuin deacylation is closely related to obesity, aging, cancer, neurodegeneration and cardiovascular diseases. In recent years, the crystal structures of sirtuin in different species, such as humans, yeast and E. coli, have been solved. However, due to the lack of systematic understanding of the molecular mechanism of sirtuin enzyme activity, the key regulatory sites of sirtuin deacylase activity are currently not fully understood. Moreover, no drugs targeting sirtuin have been approved for marketing so far. The reason is largely due to the lack of an efficient and accurate detection method for sirtuin enzyme activity. At present, the main methods for detecting sirtuin enzyme activity include isotope labeling, immunoblotting, high-performance liquid chromatography and fluorescence. Among them, isotope labeling methods are no longer commonly used due to cumbersome operations and potential safety. Western blotting and high-performance liquid chromatography are only suitable for routine in vitro enzyme activity characterization. Although coumarin-based fluorescence methods and FRET-based fluorescence methods are It can be used to measure sirtuin enzyme activity on a large scale, but current research still requires in vitro expression and purification to obtain sirtuin protein, which requires a large workload. Direct cleavage of sirtuin after synthesis in vivo often results in inactivation of the enzyme, which limits the use of these methods at high temperatures. Direct application in throughput enzyme activity detection. Currently, fluorescence methods are only used for large-scale screening of sirtuin protein inhibitors or activators in vitro. Therefore, developing a high-throughput screening method for sirtuin deacylase activity is currently a technical difficulty, and it is also the prerequisite for in-depth study of the specificity of sirtuin enzyme activity and the discovery of its functional regulation in vivo.
发明内容Contents of the invention
基于此,有必要提供一种简便、普适、灵敏的高通量筛选sirtuin突变体的方法。Based on this, it is necessary to provide a simple, universal, and sensitive method for high-throughput screening of sirtuin mutants.
此外,还提供一种sirtuin突变体及其应用。In addition, a sirtuin mutant and its application are also provided.
一种sirtuin突变体的筛选方法,包括如下步骤:A method for screening sirtuin mutants, including the following steps:
采用易错PCR技术构建sirtuin突变体库;Error-prone PCR technology was used to construct a sirtuin mutant library;
裂解所述sirtuin突变体库中各突变体,固液分离,收集裂解上清液;Each mutant in the sirtuin mutant library is lysed, solid-liquid separation is performed, and the lysis supernatant is collected;
采用AMC荧光法高通量测定所述裂解上清液的sirtuin去酰基化活性,获得所需去去酰基化活性的sirtuin突变株。The AMC fluorescence method is used to measure the sirtuin deacylation activity of the lysis supernatant in a high-throughput manner, and a sirtuin mutant strain with the required deacylation activity is obtained.
上述sirtuin突变体的筛选方法中,利用易错PCR技术获得sirtuin蛋白突变体库,再对异源表达的sirtuin蛋白突变体进行裂解并获得粗酶液,然后利用基于AMC荧光基团释放的方法原位检测sirtuin突变体的去酰基化活力,主要包括建库、裂解与检测三步即可对sirtuin蛋白突变体进行高通量筛选,步骤简单,通过裂解使体内合成的sirtuin直接裂解释放被AMC荧光法检测;该方法具有普适性,可以对不同的sirtuin进行酶活筛选,不局限于sirtuin在特定环境下行使的特定功能;更重要的是,该方法联合应用易错PCR和AMC荧光法,通过菌体蛋白表达-裂解-检测的无缝连接,使得高通量筛选sirtuin人工突变体成为可能。采用上述sirtuin突变体的筛选方法,能够简便、普适、灵敏的高通量筛选去酰基化酶sirtuin突变体。In the above screening method for sirtuin mutants, error-prone PCR technology is used to obtain a library of sirtuin protein mutants, and then the heterologously expressed sirtuin protein mutants are lysed to obtain a crude enzyme solution, and then a method based on the release of AMC fluorescent groups is used. The in-site detection of deacylation activity of sirtuin mutants mainly includes three steps of library construction, lysis and detection. High-throughput screening of sirtuin protein mutants can be carried out. The steps are simple. Sirtuin synthesized in vivo is directly cleaved through lysis to release the fluorescence of AMC. detection method; this method is universal and can screen different sirtuins for enzyme activity, and is not limited to the specific functions of sirtuins in specific environments; more importantly, this method combines error-prone PCR and AMC fluorescence methods. Through the seamless connection of bacterial protein expression-lysis-detection, high-throughput screening of artificial sirtuin mutants is possible. Using the above-mentioned screening method for sirtuin mutants, deacylase sirtuin mutants can be screened in a simple, universal, sensitive and high-throughput manner.
在其中一个实施例中,采用初始sirtuin构建所述sirtuin突变体库,所述初始sirtuin基因包括连接的关键区域片段和非关键区域片段,构建所述sirtuin突变体库的步骤包括:In one embodiment, an initial sirtuin gene is used to construct the sirtuin mutant library. The initial sirtuin gene includes connected critical region fragments and non-critical region fragments. The steps of constructing the sirtuin mutant library include:
以携带有所述初始sirtuin基因的质粒为模板进行易错PCR,得到突变片段,所述突变片段为发生点突变的所述关键区域片段;Using the plasmid carrying the initial sirtuin gene as a template, error-prone PCR is performed to obtain a mutant fragment, which is the key region fragment where point mutations occur;
以携带有表达载体的质粒为模板并在高保真酶的作用下进行PCR扩增,得到表达载体片段,所述表达载体用于表达所述初始sirtuin,所述表达载体片段由用于表达sirtuin蛋白的表达和复制原件构成,携带有所述表达载体的质粒与携带有所述初始sirtuin基因的质粒的抗性基因不同;Using the plasmid carrying the expression vector as a template and performing PCR amplification under the action of a high-fidelity enzyme, an expression vector fragment is obtained. The expression vector is used to express the initial sirtuin. The expression vector fragment is used to express the sirtuin protein. The expression and replication originals are composed of the plasmid carrying the expression vector and the resistance gene of the plasmid carrying the initial sirtuin gene is different;
将所述突变片段及所述表达载体片段重组连接后转入宿主细胞中,得到所述sirtuin突变体库。The mutant fragment and the expression vector fragment are recombinantly ligated and then transferred into host cells to obtain the sirtuin mutant library.
在其中一个实施例中,采用第一引物对进行易错PCR,所述第一引物对的序列如SEQ ID No.1~SEQ ID No.2所示。In one of the embodiments, a first primer pair is used to perform error-prone PCR, and the sequences of the first primer pair are as shown in SEQ ID No. 1 to SEQ ID No. 2.
在其中一个实施例中,所述以携带有所述初始sirtuin基因的质粒为模板并在高保真酶的作用下进行PCR扩增的步骤中,采用第二引物对进行PCR扩增,所述第二引物对的序列如SEQ ID No.3~SEQ ID No.4所示。In one embodiment, in the step of using the plasmid carrying the initial sirtuin gene as a template and performing PCR amplification under the action of a high-fidelity enzyme, a second primer pair is used to perform PCR amplification, and the third primer pair is used for PCR amplification. The sequences of the two primer pairs are shown in SEQ ID No. 3 ~ SEQ ID No. 4.
在其中一个实施例中,以目前控制的1-4个碱基/kb突变频率下计算,构建10倍覆盖率的突变体库,可以筛选到sirtuin关键区域的氨基酸位点,其中,所述突变体库有2,000个-6,000个克隆。In one embodiment, based on the currently controlled mutation frequency of 1-4 bases/kb, a mutant library with 10-fold coverage can be constructed to screen out the amino acid sites in the critical region of sirtuin, where the mutation The body bank has 2,000-6,000 clones.
在其中一个实施例中,裂解所述sirtuin突变体库中各突变体的步骤中,采用细胞裂解液进行裂解,所述细胞裂解液包括:非变性去垢剂、pH7~8的缓冲液,所述细胞裂解液与含有所述待测细胞的菌液的体积比为1:20~1:40,裂解温度为20℃~30℃,裂解时间为10min~20min。In one embodiment, in the step of lysing each mutant in the sirtuin mutant library, a cell lysis solution is used for lysis, and the cell lysis solution includes: a non-denaturing detergent and a buffer with a pH of 7 to 8, so The volume ratio of the cell lysis solution to the bacterial solution containing the cells to be tested is 1:20-1:40, the lysis temperature is 20°C-30°C, and the lysis time is 10min-20min.
在其中一个实施例中,所述采用AMC荧光法测定所述裂解上清液的sirtuin去酰基化活性的步骤包括:In one embodiment, the step of using the AMC fluorescence method to determine the sirtuin deacylation activity of the lysis supernatant includes:
将AMC肽段反应液与所述裂解上清液混合,于37℃、200rpm~300rpm下反应1h,得到第一处理液,所述AMC肽段反应液含有带有酰基修饰的AMC肽段,所述AMC肽段的终浓度为100μM~500μM;Mix the AMC peptide reaction solution with the lysis supernatant and react for 1 hour at 37°C and 200rpm to 300rpm to obtain the first treatment solution. The AMC peptide reaction solution contains the AMC peptide with acyl modification, so The final concentration of the AMC peptide is 100 μM ~ 500 μM;
向所述第一处理液中加入2×终止液,于25℃~37℃静置反应1h~1.5h,得到第二处理液,所述终止液包括2.0mg/mL~5.0mg/mL trypsin、含有2mM~6mM NAM的2×Tris缓冲液;Add 2× stop solution to the first treatment solution, and let it react at 25°C to 37°C for 1h to 1.5h to obtain the second treatment solution. The stop solution includes 2.0mg/mL to 5.0mg/mL trypsin, 2×Tris buffer containing 2mM~6mM NAM;
在360nm激发波长、460nm发射波长下检测所述第二处理液的荧光强度,根据所述第二处理液的荧光强度判断所述待测细胞中sirtuin的去酰基化酶活性。The fluorescence intensity of the second treatment solution is detected at an excitation wavelength of 360 nm and an emission wavelength of 460 nm, and the deacylase activity of sirtuin in the cells to be tested is determined based on the fluorescence intensity of the second treatment solution.
在其中一个实施例中,所述带有酰基修饰的AMC肽段中所述酰基修饰为乙酰基修饰、琥珀酰基修饰、肉豆蔻酰基修饰、壬酰基修饰或者长链脂肪酰基修饰。In one embodiment, the acyl modification in the AMC peptide with acyl modification is acetyl modification, succinyl modification, myristoyl modification, nonanoyl modification or long-chain fatty acyl modification.
在其中一个实施例中,所述AMC肽段为带BOC保护基团的赖氨酸酰基 化修饰且带有AMC标记的肽段。In one embodiment, the AMC peptide is a lysine acylation-modified peptide with a BOC protection group and AMC label.
一种sirtuin突变体,由上述sirtuin突变体的筛选方法制备得到。A sirtuin mutant is prepared by the above-mentioned screening method for sirtuin mutants.
在其中一个实施例中,由野生型sirtuin的如下位点中的至少一个发生突变得到:第76位的丙氨酸、第91位的苯丙氨酸、第147位的组氨酸、第155位的半胱氨酸、第185位的脯氨酸。In one embodiment, it is obtained by mutating at least one of the following sites of wild-type sirtuin: alanine at position 76, phenylalanine at position 91, histidine at position 147, histidine at position 155 cysteine at position 185 and proline at position 185.
在其中一个实施例中,其特征在于,第76位的丙氨酸发生如下突变中的一种:A76P、A76V;In one of the embodiments, it is characterized in that the alanine at position 76 undergoes one of the following mutations: A76P, A76V;
第91位的苯丙氨酸发生如下突变中的一种:F91L、F91S;The phenylalanine at position 91 has one of the following mutations: F91L, F91S;
第147位的组氨酸发生如下突变中的一种:H147L、H147Y;Histidine at position 147 has one of the following mutations: H147L, H147Y;
第155位的半胱氨酸发生如下突变中的一种:C155R、C155S、C155Y;The cysteine at position 155 has one of the following mutations: C155R, C155S, C155Y;
第185位的脯氨酸发生如下突变中的一种:P185L、P185T。The proline at position 185 has one of the following mutations: P185L, P185T.
上述sirtuin突变体在去酰基化酶活改变上的应用。Application of the above sirtuin mutants in changing deacylase activity.
附图说明Description of drawings
图1为AMC荧光法检测原理图;Figure 1 is the schematic diagram of AMC fluorescence detection;
图2为突变体库构建流程图;Figure 2 is a flow chart of mutant library construction;
图3为突变片段及骨架片段的凝胶电泳图;Figure 3 shows the gel electrophoresis pattern of the mutant fragments and backbone fragments;
图4为实施例1中测序结果图;Figure 4 is a diagram of the sequencing results in Example 1;
图5为裂解上清液的凝胶电泳图;Figure 5 is a gel electrophoresis diagram of the lysis supernatant;
图6为BL21裂解产物与肽段反应的荧光检测结果图;Figure 6 shows the fluorescence detection results of the reaction between BL21 cleavage products and peptide fragments;
图7为纯化sirtuin蛋白或含sirtuin的细胞裂解上清液与底物反应的荧光检测结果图;Figure 7 shows the fluorescence detection results of the reaction between purified sirtuin protein or sirtuin-containing cell lysate supernatant and substrate;
图8为突变体库荧光检测结果示例图;Figure 8 is an example of the fluorescence detection results of the mutant library;
图9为荧光检测突变体库酶活及位点信息图;Figure 9 is a fluorescence detection mutant library enzyme activity and site information diagram;
图10为sirtuin酶活调控位点分析图;Figure 10 is an analysis diagram of the regulatory sites of sirtuin enzyme activity;
图11为细胞裂解液与AMC-peptide Ac或AMC-peptide Su肽段反应的荧光检测结果图; Figure 11 shows the fluorescence detection results of the reaction between cell lysate and AMC-peptide Ac or AMC-peptide Su peptide segments;
图12为裂解液对STM1221和SIRT2的酶活影响图。Figure 12 shows the effect of lysate on the enzyme activities of STM1221 and SIRT2.
具体实施方式Detailed ways
为使本发明的上述目的、特征和优点能够更加明显易懂,下面结合具体实施例及附图对本发明的具体实施方式做详细的说明。在下面的描述中阐述了很多具体细节以便于充分理解本发明。但是本发明能够以很多不同于在此描述的其它方式来实施,本领域技术人员可以在不违背本发明内涵的情况下做类似改进,因此本发明不受下面公开的具体实施的限制。In order to make the above objects, features and advantages of the present invention more obvious and easy to understand, the specific implementation modes of the present invention will be described in detail below with reference to specific embodiments and drawings. In the following description, numerous specific details are set forth in order to provide a thorough understanding of the invention. However, the present invention can be implemented in many other ways different from those described here. Those skilled in the art can make similar improvements without departing from the connotation of the present invention. Therefore, the present invention is not limited to the specific implementation disclosed below.
本申请一实施方式提供一种sirtuin突变体的筛选方法,包括如下步骤S210~S230:One embodiment of the present application provides a method for screening sirtuin mutants, including the following steps S210 to S230:
S210、采用易错PCR技术构建sirtuin突变体库。S210. Use error-prone PCR technology to construct a sirtuin mutant library.
易错PCR(Error-prone PCR)是一种用于构建蛋白质随机点突变体库的方法,它通过在PCR中使用低保真DNA聚合酶,并且调整PCR反应条件来降低DNA复制的准确度,从而实现基因中的点突变。将突变引入基因后,对应氨基酸发生改变,进而对目的蛋白质的结构与功能产生影响。易错PCR产生数量庞大的突变产物由克隆连接至表达载体上,生成目的蛋白质的随机点突变体库。采用易错PCR能够扩大突变体库的体积能够增大其覆盖率,提高筛选准确性。Error-prone PCR is a method used to construct a library of random point mutants of proteins. It uses low-fidelity DNA polymerase in PCR and adjusts PCR reaction conditions to reduce the accuracy of DNA replication. This enables point mutations in genes. After a mutation is introduced into a gene, the corresponding amino acid changes, thereby affecting the structure and function of the target protein. Error-prone PCR produces a large number of mutation products that are cloned and ligated into expression vectors to generate a library of random point mutants of the target protein. The use of error-prone PCR can expand the size of the mutant library, increase its coverage, and improve screening accuracy.
在其中一个实施例中,采用初始sirtuin构建sirtuin突变体库,初始sirtuin基因包括连接的关键区域片段和非关键区域片段。初始sirtuin即需要进行突变 的sirtuin。初始sirtuin不限,可以为野生型sirtuin,也可以为其他已突变且还需要再次突变的sirtuin。In one embodiment, an initial sirtuin gene is used to construct a sirtuin mutant library, and the initial sirtuin gene includes connected critical region fragments and non-critical region fragments. The initial sirtuin is the sirtuin that needs to be mutated. The initial sirtuin is not limited and can be a wild-type sirtuin or other sirtuin that has been mutated and needs to be mutated again.
其中,关键区域为可能存在活性位点(即对酶活存在影响的位点)的区域。非关键区域为除关键区域以外的区域。Among them, the key region is the region where active sites (i.e., sites that affect enzyme activity) may exist. Non-critical areas are areas other than critical areas.
具体地,如图2(图2为突变体库构建流程图)所示,采用易错PCR技术构建sirtuin突变体库的步骤包括S211~S213:Specifically, as shown in Figure 2 (Figure 2 is a flow chart of mutant library construction), the steps of constructing a sirtuin mutant library using error-prone PCR technology include S211 to S213:
S211、以携带有初始sirtuin基因的质粒为模板进行易错PCR,得到突变片段,突变片段为发生点突变的关键区域片段。S211. Use the plasmid carrying the initial sirtuin gene as a template to perform error-prone PCR to obtain a mutant fragment, which is a key region fragment where point mutations occur.
其中,突变片段为发生1至4个点突变的关键区域片段。需要说明的是,可通过控制易错PCR的模板量,扩增出每个产物带有1-4个点突变的sirtuin关键区域的DNA片段。Among them, the mutated fragments are key region fragments with 1 to 4 point mutations. It should be noted that by controlling the template amount of error-prone PCR, DNA fragments in the key region of sirtuin with 1-4 point mutations in each product can be amplified.
其中,携带有初始sirtuin基因的质粒为具有卡那霉素(Kanamycin,Kan)抗性的pET28a-sirtuin质粒。该质粒能够表达初始sirtuin。Among them, the plasmid carrying the initial sirtuin gene is the pET28a-sirtuin plasmid with kanamycin (Kanamycin, Kan) resistance. This plasmid is capable of expressing the original sirtuin.
其中,采用第一引物对进行易错PCR。第一引物对的序列如SEQ ID No.1~SEQ ID No.2所示。具体地,如SEQ ID No.1所示的序列为ggaaatgatggaaaacccaaga。如SEQ ID No.2所示的序列为ccgacttggcttggctcaag。Among them, the first primer pair is used to perform error-prone PCR. The sequence of the first primer pair is shown as SEQ ID No.1 ~ SEQ ID No.2. Specifically, the sequence shown in SEQ ID No. 1 is ggaaatgatggaaaacccaaga. The sequence shown in SEQ ID No. 2 is ccgacttggcttggctcaag.
具体地,EP-PCR体系配方如表2所示。Specifically, the EP-PCR system formula is shown in Table 2.
表2 EP-PCR体系配方Table 2 EP-PCR system formula
Figure PCTCN2022119322-appb-000001
Figure PCTCN2022119322-appb-000001
Figure PCTCN2022119322-appb-000002
Figure PCTCN2022119322-appb-000002
在一个具体示例中,以pET28a-sirtuin质粒为模板,利用随机突变PCR酶(GeneMorph II Random Mutagenesis Kit,Agilent),通过控制模板量,扩增出每个产物带有1-4个点突变的sirtuin关键区域的DNA片段(即突变片段)。In a specific example, pET28a-sirtuin plasmid was used as a template, random mutation PCR enzyme (GeneMorph II Random Mutagenesis Kit, Agilent) was used, and sirtuin with 1-4 point mutations in each product was amplified by controlling the template amount. DNA fragments in critical regions (i.e., mutated fragments).
S212、以携带表达载体的质粒为模板并在高保真酶的作用下进行PCR扩增,得到表达载体片段,表达载体用于表达初始sirtuin,表达载体片段由用于表达sirtuin蛋白的表达和复制原件构成,携带有表达载体的质粒与携带有初始sirtuin基因的质粒的抗性基因不同。S212. Using the plasmid carrying the expression vector as a template and performing PCR amplification under the action of a high-fidelity enzyme, an expression vector fragment is obtained. The expression vector is used to express the initial sirtuin. The expression vector fragment is composed of expression and replication elements for expressing the sirtuin protein. The resistance gene of the plasmid carrying the expression vector is different from that of the plasmid carrying the initial sirtuin gene.
其中,携带有表达载体的质粒为具有氨苄西林(Ampiciline,Amp)抗性的pTEV5-sirtuin质粒。该质粒能够表达初始sirtuin。Among them, the plasmid carrying the expression vector is pTEV5-sirtuin plasmid with ampicillin (Ampiciline, Amp) resistance. This plasmid is capable of expressing the original sirtuin.
其中,以携带有表达载体的质粒为模板并在高保真酶的作用下进行PCR扩增的步骤中,采用第二引物对进行PCR扩增。第二引物对的序列如SEQ ID No.3~SEQ ID No.4所示。具体地,如SEQ ID No.3所示的序列为cttgagccaagccaagtcgg。如SEQ ID No.4所示的序列为tcttgggttttccatcatttcc。Among them, in the step of using the plasmid carrying the expression vector as a template and performing PCR amplification under the action of a high-fidelity enzyme, a second primer pair is used to perform PCR amplification. The sequence of the second primer pair is shown in SEQ ID No. 3 ~ SEQ ID No. 4. Specifically, the sequence shown in SEQ ID No. 3 is cttgagccaagccaagtcgg. The sequence shown in SEQ ID No. 4 is tcttgggttttccatcatttcc.
在一个具体示例中,以pTEV5-sirtuin为模板,利用高保真酶扩增出除关键区域以外的sirtuin连同表达载体的片段,并用DpnI消模板,得到载体片段。In a specific example, pTEV5-sirtuin was used as a template, a high-fidelity enzyme was used to amplify the fragments of sirtuin except the critical region together with the expression vector, and the template was eliminated with DpnI to obtain the vector fragment.
需要说明的是,S211和S212的顺序不限,可以先进行S211再进行S212,也可以先进行S212再进行S211,也可以同时进行S211和S212。It should be noted that the order of S211 and S212 is not limited. S211 can be performed first and then S212, S212 can be performed first and then S211, or S211 and S212 can be performed at the same time.
S213、将突变片段及表达载体片段重组连接后转入宿主细胞中,得到sirtuin突变体库。S213. Recombine the mutant fragment and the expression vector fragment and transfer them into the host cell to obtain a sirtuin mutant library.
其中,采用重组酶连接突变片段及表达载体片段。Among them, recombinase is used to connect the mutant fragment and the expression vector fragment.
其中,宿主细胞为感受态宿主细胞。具体可以为感受态DH5α或者感受态 BL21,也可以为其他感受态宿主细胞。Wherein, the host cell is a competent host cell. Specifically, it can be competent DH5α or competent BL21, or other competent host cells.
在一个具体示例中,PCR产物片段经纯化后,被重组酶连接转化到DH5α感受态,并利用氨苄抗性筛选出阳性克隆,即目标克隆。挑取10个左右克隆,测序,检验是否发生关键区域的随机点突变及突变个数是否符合要求,并根据结果调整初始模板浓度使获得的克隆达到想要的突变频次。因为本示例的片段连接产物(突变片段及载体片段重组连接产物)难以直接高效地转化到BL21中,所以本方案先将重组产物转化到DH5α,再从DH5α混合菌斑中提取质粒,转化到BL21中。在氨苄平板上成功生长的BL21克隆再随机挑选测序,检验突变结果是否符合预期。需要说明的是,若片段连接产物能够直接转入BL21中,则转入DH5α的步骤可省略。In a specific example, the PCR product fragment is purified, ligated and transformed into a DH5α competent state by recombinase, and ampicillin resistance is used to screen out positive clones, that is, target clones. Pick about 10 clones, sequence them, check whether random point mutations occur in key regions and whether the number of mutations meets the requirements, and adjust the initial template concentration based on the results to make the obtained clones reach the desired mutation frequency. Because the fragment ligation products (mutated fragments and vector fragment recombinant ligation products) in this example are difficult to directly and efficiently transform into BL21, this protocol first transforms the recombinant products into DH5α, then extracts plasmids from DH5α mixed plaques and transforms them into BL21 middle. The BL21 clones that successfully grew on the ampicillin plate were randomly selected and sequenced to check whether the mutation results were as expected. It should be noted that if the fragment ligation product can be directly transferred into BL21, the step of transferring into DH5α can be omitted.
在一个具体示例中,对所选sirtuin的基因进行易错PCR突变建立sirtuin突变体库所用的酶为Agilent公司的GeneMorph II Random Mutagenesis Kit中的酶。In a specific example, the enzyme used to perform error-prone PCR mutagenesis of the selected sirtuin gene to establish a sirtuin mutant library is the enzyme in Agilent's GeneMorph II Random Mutagenesis Kit.
S220、裂解sirtuin突变体库中各突变体,固液分离,收集裂解上清液。S220. Each mutant in the sirtuin mutant library is lysed, solid-liquid separation is performed, and the lysis supernatant is collected.
其中,采用细胞裂解液进行裂解,细胞裂解液包括:非变性去垢剂、pH7~8的缓冲液。该细胞裂解液能够裂解含有sirtuin的细胞,得到的裂解产物无需经过纯化即可能够用于AMC荧光检测sirtuin的去酰基化酶活性。Among them, cell lysis solution is used for lysis, and the cell lysis solution includes: non-denaturing detergent and buffer solution with pH 7-8. The cell lysate can lyse cells containing sirtuin, and the obtained lysate can be used for AMC fluorescence detection of sirtuin deacylase activity without purification.
进一步地,细胞裂解液包括质量百分含量为0.5%~2%的非变性去垢剂、100mM~200mM的盐类物质及pH为7~8的缓冲液。Further, the cell lysis solution includes a non-denaturing detergent with a mass percentage of 0.5% to 2%, a salt substance of 100mM to 200mM, and a buffer with a pH of 7 to 8.
研究发现,上述细胞裂解液中,质量百分含量为0.5%~2%的非变性去垢剂、100mM~200mM的盐类物质及pH为7~8的缓冲液能够裂解含有sirtuin的细胞,得到的裂解产物无需经过纯化即可用于AMC荧光检测sirtuin的去酰基化酶活性,操作简单,能够对不同的sirtuin进行酶活筛选,不局限于sirtuin在特定环 境下行使的特定功能。经试验验证,采用本研究的细胞裂解液对细胞进行裂解,转化有STM1221的BL21细胞裂解产物与AMC肽段混合反应产生荧光,而未转化有STM1221的BL21细胞裂解产物与AMC肽段混合无荧光,酶活检测特异性较强。Studies have found that in the above cell lysate, non-denaturing detergents with a mass percentage of 0.5% to 2%, salts from 100mM to 200mM, and buffers with a pH of 7 to 8 can lyse cells containing sirtuin, yielding The cleavage product can be used for AMC fluorescence detection of sirtuin deacylase activity without purification. It is simple to operate and can screen different sirtuins for enzyme activity. It is not limited to the specific functions of sirtuins in specific environments. It has been verified through experiments that the cells were lysed using the cell lysate in this study. The BL21 cell lysates transformed with STM1221 reacted with AMC peptides to produce fluorescence, while the BL21 cell lysates not transformed with STM1221 showed no fluorescence when mixed with AMC peptides. , enzyme activity detection has strong specificity.
其中,非变性去垢剂为NP-40(即乙基苯基聚乙二醇,)、氧胆酸钠及Triton X-100(聚乙二醇辛基苯基醚)中的至少一种。非变性去垢剂的加入能够温和裂解细胞,降低对释放的胞内酶活性的影响。进一步地,非变性去垢剂的质量百分含量为0.5%~2%。更进一步地,非变性去垢剂的质量百分含量为0.5%~1.5%。Among them, the non-denaturing detergent is at least one of NP-40 (ie, ethylphenyl polyethylene glycol), sodium oxycholate and Triton X-100 (polyethylene glycol octyl phenyl ether). The addition of non-denaturing detergent can gently lyse cells and reduce the impact on the activity of released intracellular enzymes. Further, the mass percentage of the non-denaturing detergent is 0.5% to 2%. Furthermore, the mass percentage of the non-denaturing detergent is 0.5% to 1.5%.
缓冲液为25mM~50mM Tris-HCl缓冲液。该缓冲液既能够辅助裂解细胞,又能够保护细胞裂解释放的酶的活性。The buffer is 25mM ~ 50mM Tris-HCl buffer. This buffer can both assist in cell lysis and protect the activity of enzymes released by cell lysis.
盐类物质为NaCl或者KCl。氯化钠和氯化钾能够使溶液达到一定浓度,维持渗透压,并保证一定的离子强度稳定蛋白质,一般使用与生理盐水相同的成分NaCl。The salt substance is NaCl or KCl. Sodium chloride and potassium chloride can make the solution reach a certain concentration, maintain osmotic pressure, and ensure a certain ionic strength to stabilize proteins. Generally, NaCl, the same ingredient as physiological saline, is used.
在一个具体示例中,细胞裂解液包括:质量百分含量为1%的NP-40、150mM的NaCl、pH7.6、25mM的Tris-HCl缓冲液。该细胞裂解液能够温和裂解细胞,降低对释放的胞内酶活性的影响。In a specific example, the cell lysis solution includes: NP-40 with a mass percentage of 1%, 150mM NaCl, pH7.6, and 25mM Tris-HCl buffer. This cell lysis solution can gently lyse cells and reduce the impact on the activity of released intracellular enzymes.
其中,采用细胞裂解液裂解sirtuin突变体库的步骤包括:将细胞裂解液与含有sirtuin突变体库细胞的菌液以比例为1:20~1:40混合,在裂解温度为20℃~30℃下300rpm振荡10min~20min。Among them, the steps of using cell lysis solution to lyse the sirtuin mutant library include: mixing the cell lysate and the bacterial solution containing the sirtuin mutant library cells in a ratio of 1:20 to 1:40, and lysing at a temperature of 20°C to 30°C. Shake at 300rpm for 10min~20min.
其中,固液分离的方式为离心。在一个具体示例中,离心的条件为4000rpm、4℃离心10min。需要说明的是,固液分离的方式不限于为离心,也可以为其他固液分离方式,例如过滤。Among them, the solid-liquid separation method is centrifugation. In a specific example, the centrifugation conditions are 4000 rpm and 4°C for 10 minutes. It should be noted that the solid-liquid separation method is not limited to centrifugation, and can also be other solid-liquid separation methods, such as filtration.
在一个具体示例中,S220的步骤包括:将BL21克隆挑到96孔板培养,37℃800rpm摇菌过夜。之后,将饱和菌液1:20转接到新的96孔板中继续摇菌,约1.5-2h后,OD达到0.4。此时,加入终浓度为0.3mM的IPTG,25℃诱导sirtuin蛋白表达。16h后,将孔板4000rpm,4℃离心10min收菌。然后,在96孔板每孔加入10μL温和细胞裂解液,该裂解液的有效成分为含非变性去垢剂的25mM Tris-HCl缓冲液(pH 7.6)。300rpm振荡10min,获得细胞裂解产物。最后,4000rpm 4℃离心10min,获得含目标sirtuin蛋白的裂解上清液。In a specific example, step S220 includes: picking the BL21 clone into a 96-well plate for culture, and shaking the culture at 37°C and 800 rpm overnight. After that, transfer the saturated bacterial solution 1:20 to a new 96-well plate and continue shaking the bacteria. After about 1.5-2 hours, the OD reaches 0.4. At this time, IPTG with a final concentration of 0.3mM was added to induce sirtuin protein expression at 25°C. After 16 hours, centrifuge the well plate at 4000 rpm and 4°C for 10 minutes to collect bacteria. Then, add 10 μL of mild cell lysis solution to each well of the 96-well plate. The active ingredient of the lysis solution is 25mM Tris-HCl buffer (pH 7.6) containing non-denaturing detergent. Shake at 300 rpm for 10 min to obtain cell lysate. Finally, centrifuge at 4000 rpm and 4°C for 10 min to obtain the lysis supernatant containing the target sirtuin protein.
S230、采用AMC荧光法测定裂解上清液的sirtuin去酰基化活性,获得所需去酰基化活性的sirtuin突变株。S230. Use the AMC fluorescence method to measure the sirtuin deacylation activity of the lysis supernatant to obtain the sirtuin mutant strain with the required deacylation activity.
7-氨基-4-甲基香豆素(7-amino-4-methylcoumarin,AMC)是一种多肽荧光标记试剂,在蛋白酶研究中应用广泛。使用AMC荧光法测定sirtuin酶活时,将AMC的香豆素胺与多肽分子C端赖氨酸残基的羧基进行缩合反应形成酰胺键,合成AMC修饰的多肽分子(AMC荧光法检测原理如图1所示)。如果在赖氨酸侧链上有完整的酰化修饰基团,由于位阻效应,胰酶不能水解酰胺键释放AMC;而当sirtuin去除赖氨酸侧链上的酰基修饰后,位阻效应消失,产生的去修饰肽随后被胰蛋白酶切割,AMC被释放。由于AMC在360nm激发光,460nm发射光下产生荧光,而AMC的释放量与sirtuin的酶活成正比,可以通过读取荧光数据定量表征sirtuin酶活力。7-amino-4-methylcoumarin (AMC) is a peptide fluorescent labeling reagent that is widely used in protease research. When using the AMC fluorescence method to measure sirtuin enzyme activity, the coumarin amine of AMC is condensed with the carboxyl group of the C-terminal lysine residue of the polypeptide molecule to form an amide bond, and the AMC-modified polypeptide molecule is synthesized (the detection principle of the AMC fluorescence method is shown in the figure shown in 1). If there is a complete acylation modification group on the lysine side chain, trypsin cannot hydrolyze the amide bond to release AMC due to steric hindrance; but when sirtuin removes the acyl modification on the lysine side chain, the steric hindrance effect disappears , the resulting demodified peptide is subsequently cleaved by trypsin, and AMC is released. Since AMC produces fluorescence under 360nm excitation light and 460nm emission light, and the amount of AMC released is proportional to the enzyme activity of sirtuin, the activity of sirtuin enzyme can be quantitatively characterized by reading the fluorescence data.
具体地,S230的步骤包括S231-S233:Specifically, the steps of S230 include S231-S233:
S231、将AMC肽段反应液与上述裂解上清液混合,于37℃、200rpm~300rpm下反应1h,得到第一处理液。S231. Mix the AMC peptide reaction solution and the above-mentioned lysis supernatant, and react at 37°C and 200 to 300 rpm for 1 hour to obtain the first treatment solution.
其中,AMC肽段反应液含有带有酰基修饰的AMC肽段。AMC肽段的终 浓度为100μM~500μM。具体地,AMC肽段的终浓度为200μM。AMC肽段反应液与裂解上清液的体积比为1:1。该体积比方便取样加样。Among them, the AMC peptide reaction solution contains acyl-modified AMC peptides. The final concentration of AMC peptide is 100μM~500μM. Specifically, the final concentration of AMC peptide was 200 μM. The volume ratio of AMC peptide reaction solution and lysis supernatant is 1:1. This volume ratio facilitates sampling and loading.
在其中一个实施例中,AMC肽段为合成的带BOC保护基团的赖氨酸酰基化修饰且有AMC标记的肽段。In one embodiment, the AMC peptide is a synthetic lysine acylation-modified peptide with a BOC protection group and AMC label.
在其中一个实施例中,带有酰基修饰的AMC肽段中酰基修饰为乙酰基修饰、琥珀酰基修饰、肉豆蔻酰基修饰、壬酰基修饰或者长链脂肪酰基修饰。需要说明的是,采用带有不同酰基修饰的AMC肽段,能够测定sirtuin的不同的去酰基化酶活性。需要说明的是,酰基修饰不限于为上述指出的酰基修饰,也可以为其他酰基修饰,可根据需要测定的去酰基化酶活性,采用带有不同酰基修饰的AMC-peptide肽段。In one embodiment, the acyl modification in the AMC peptide with acyl modification is acetyl modification, succinyl modification, myristoyl modification, nonanoyl modification or long-chain fatty acyl modification. It should be noted that the different deacylase activities of sirtuin can be measured using AMC peptides with different acyl modifications. It should be noted that the acyl modification is not limited to the above-mentioned acyl modifications, and can also be other acyl modifications. AMC-peptide peptides with different acyl modifications can be used according to the deacylase activity measured as needed.
在一个具体示例中,带有酰基修饰的AMC肽段为AMC-peptide Ac(即乙酰基修饰的AMC-peptide肽段)。S231的步骤具体为:在384孔板中每孔加入含AMC-peptide Ac的反应液10μL,包括2μL 10×Tris缓冲液(0.5M Tris-HCl,pH8.0,1.37M NaCl,27mM KCl,10mM MgCl 2),1μL 20mM NAD +,0.8μL 5mM AMC-peptide Ac,6.2μL ddH 2O。之后,加入获得的sirtuin蛋白裂解上清液10μL,总体积为20μL,肽段终浓度为200μM。37℃,300rpm振荡反应1h,得到第一处理液。 In a specific example, the AMC peptide with acyl modification is AMC-peptide Ac (i.e., acetyl-modified AMC-peptide peptide). The specific steps of S231 are: add 10 μL of reaction solution containing AMC-peptide Ac to each well of the 384-well plate, including 2 μL of 10×Tris buffer (0.5M Tris-HCl, pH8.0, 1.37M NaCl, 27mM KCl, 10mM MgCl 2 ), 1 μL 20mM NAD + , 0.8 μL 5mM AMC-peptide Ac , 6.2 μL ddH 2 O. After that, 10 μL of the obtained sirtuin protein lysis supernatant was added, the total volume was 20 μL, and the final concentration of the peptide was 200 μM. The reaction was carried out with shaking at 37°C and 300 rpm for 1 hour to obtain the first treatment liquid.
S232、向第一处理液中加入2×终止液,于25℃~37℃静置反应1h~1.5h,得到第二处理液。S232. Add 2× stop solution to the first treatment solution, and let it react at 25°C to 37°C for 1h to 1.5h to obtain the second treatment solution.
其中,第一处理液与终止液的体积比为1:1。该体积比方便取样加样。The volume ratio of the first treatment solution to the stop solution is 1:1. This volume ratio facilitates sampling and loading.
其中,终止液包括2.0mg/mL~5.0mg/mL trypsin、含有2mM~6mM NAM的2×Tris缓冲液。Among them, the stop solution includes 2.0mg/mL~5.0mg/mL trypsin and 2×Tris buffer containing 2mM~6mM NAM.
S233、在360nm激发波长、460nm发射波长下检测第二处理液的荧光强 度,根据第二处理液的荧光强度判断待测细胞中sirtuin的去酰基化酶活性。S233. Detect the fluorescence intensity of the second treatment solution at an excitation wavelength of 360nm and an emission wavelength of 460nm, and determine the deacylase activity of sirtuin in the cells to be tested based on the fluorescence intensity of the second treatment solution.
其中,检测荧光强度的工具为酶标仪。需要说明的是,检测荧光强度的工具不限于为酶标仪,也可以为其他能够检测荧光强度的工具,例如荧光光度计。Among them, the tool for detecting fluorescence intensity is a microplate reader. It should be noted that the tool for detecting fluorescence intensity is not limited to a microplate reader, and may also be other tools capable of detecting fluorescence intensity, such as a fluorescence photometer.
在一个具体示例中,以转入空白质粒的BL21裂解液为负对照,转入野生型pTEV5-sirtuin质粒的BL21裂解液为正对照。In a specific example, the BL21 lysate transferred into the blank plasmid is used as a negative control, and the BL21 lysate transferred into the wild-type pTEV5-sirtuin plasmid is used as the positive control.
研究发现,荧光强度与sirtuin蛋白的去乙酰化酶活性成正比。因此,可以根据该正比关系对sirtuin的去乙酰化活性进行定量检测。例如采用标准曲线法进行定量检测。The study found that the fluorescence intensity is directly proportional to the deacetylase activity of sirtuin protein. Therefore, the deacetylation activity of sirtuin can be quantitatively detected based on this proportional relationship. For example, the standard curve method is used for quantitative detection.
需要说明的是,获得所需去去酰基化活性的sirtuin突变株之后,还可以对酶活性改变较大的克隆进行测序,分析,总结,即可得到相应的突变位点信息,预测和验证sirtuin蛋白去乙酰化活性位点。It should be noted that after obtaining the sirtuin mutant strain with the required deacylation activity, you can also sequence, analyze, and summarize the clones with large changes in enzyme activity to obtain the corresponding mutation site information, predict and verify sirtuin Protein deacetylation active site.
其中,以目前控制的1-4个碱基/kb突变频率下计算,构建10倍覆盖率的突变体库(筛选2,000-6,000个克隆),可以筛选到所有关键区域的sirtuin氨基酸位点,其中,突变体库有2,000个-6,000个克隆。Among them, based on the currently controlled mutation frequency of 1-4 bases/kb, a mutant library with 10-fold coverage (screening 2,000-6,000 clones) can be constructed to screen for sirtuin amino acid sites in all key regions, where , the mutant library has 2,000-6,000 clones.
上述sirtuin突变体的筛选方法能够简便、高通量、可重复的筛选到去酰基化酶sirtuin人工突变体。利用易错PCR获得sirtuin蛋白编码DNA的随机点突变片段,构建重组质粒并转化到大肠杆菌中,获得sirtuin蛋白突变体库。然后,利用优化的温和细胞裂解液,对96孔板中异源表达的sirtuin蛋白突变体进行裂解并获得粗酶液。最后,利用基于AMC荧光基团释放的方法原位检测sirtuin突变体的去酰基化活力。因此,该方法主要包括建库、裂解与检测三步,通过96孔板培养诱导sirtuin蛋白以及酶标仪荧光检测就能对sirtuin蛋白突变体进行高通量筛选。该方法的主要特点在于步骤简单,优化采用的细胞裂解液使得体内合成的sirtuin直接裂解释放被AMC荧光法检测;而且,该方法具有普适 性,可以对不同的sirtuin进行酶活筛选,不局限于sirtuin在特定环境下行使的特定功能;更重要的是,该方法联合应用易错PCR和AMC荧光法,通过菌体蛋白表达-裂解-检测的无缝连接,使得高通量筛选sirtuin人工突变体成为可能。后续对sirtuin突变体进行测序,得到突变位点的信息,可以分析位点突变与酶活改变的关系,预测并验证sirtuin去酰基化活性关键位点。The above-mentioned screening method for sirtuin mutants can easily, high-throughput, and reproducibly screen artificial mutants of deacylase sirtuin. Error-prone PCR was used to obtain random point mutation fragments of sirtuin protein coding DNA, and the recombinant plasmid was constructed and transformed into E. coli to obtain a sirtuin protein mutant library. Then, the optimized mild cell lysis solution was used to lyse the heterologously expressed sirtuin protein mutant in a 96-well plate and obtain crude enzyme solution. Finally, the deacylation activity of sirtuin mutants was detected in situ using a method based on the release of AMC fluorophores. Therefore, this method mainly includes three steps: library construction, lysis and detection. High-throughput screening of sirtuin protein mutants can be carried out through 96-well plate culture to induce sirtuin protein and microplate reader fluorescence detection. The main feature of this method is that the steps are simple, and the optimized cell lysis solution allows the sirtuin synthesized in the body to be directly cleaved and released for detection by the AMC fluorescence method; moreover, the method is universal and can screen different sirtuins for enzyme activity without limitation. Due to the specific functions of sirtuin in specific environments; more importantly, this method combines error-prone PCR and AMC fluorescence methods to enable high-throughput screening of sirtuin artificial mutations through the seamless connection of bacterial protein expression-lysis-detection. body becomes possible. Subsequent sequencing of sirtuin mutants will provide information on mutation sites, which can analyze the relationship between site mutations and changes in enzyme activity, and predict and verify key sites for sirtuin deacylation activity.
AMC荧光检测多用于检测单一sirtuin酶活,或是通过体外酶活检测高通量筛选sirtuin对应的底物、抑制剂等。然而,由于许多sirtuin蛋白并不能在体外表达纯化,而体内合成sirtuin后直接裂解释放又往往造成后续反应酶的失活,并且需要进行蛋白纯化等过程才可进行酶活检测。本申请采用细胞裂解液温和裂解sirtuin突变体,得到的裂解产物无需经过纯化即可能够用于AMC荧光检测sirtuin的去酰基化酶活性,操作简单,能够对不同的sirtuin进行酶活筛选,不局限于sirtuin在特定环境下行使的特定功能。AMC fluorescence detection is mostly used to detect the enzyme activity of a single sirtuin, or to screen the substrates and inhibitors corresponding to sirtuin through high-throughput in vitro enzyme activity detection. However, since many sirtuin proteins cannot be expressed and purified in vitro, the direct cleavage and release of sirtuin after synthesis in vivo often results in the inactivation of subsequent reaction enzymes, and protein purification and other processes are required before enzyme activity detection can be carried out. This application uses cell lysis solution to gently lyse sirtuin mutants. The obtained cleavage product can be used for AMC fluorescence detection of sirtuin deacylase activity without purification. The operation is simple and can screen different sirtuins for enzyme activity. It is not limited to It is based on the specific functions that sirtuin performs in a specific environment.
目前,对sirtuin蛋白的位点研究,要么通过大量的分子生物学实验筛选验证,费时费力;要么通过蛋白结构解析,通量很低。因此,一种依赖于酶活检测的高通量突变体筛选方法开发显得尤为重要。本发明将采用易错PCR进行建库和AMC荧光法进行酶活检测有机结合,通过分子克隆得到频次可控的随机突变体库,表达蛋白后原位检测得到酶活信息,构建了一个成套的sirtuin突变体筛选体系,简单可靠且通量较高,能够简单且高通量的方法筛选发现sirtuin蛋白的去酰基化活性调控位点,为后续sirtuin结构和功能研究提供基础。At present, research on the sites of sirtuin proteins is either through screening and verification through a large number of molecular biology experiments, which is time-consuming and laborious; or through protein structure analysis, which is very low-throughput. Therefore, the development of a high-throughput mutant screening method that relies on enzyme activity detection is particularly important. The present invention organically combines error-prone PCR for library construction and AMC fluorescence method for enzyme activity detection, obtains a random mutant library with controllable frequency through molecular cloning, expresses the protein and obtains enzyme activity information through in-situ detection, thereby constructing a complete set of The sirtuin mutant screening system is simple, reliable and has high throughput. It can screen and discover the deacylation active regulatory site of sirtuin protein in a simple and high-throughput method, providing a basis for subsequent research on the structure and function of sirtuin.
本方法筛选sirtuin酶活突变体,在大肠杆菌中进行原位表达和活力测定,减去了繁琐的蛋白纯化和转移过程,非常简便;而且,利用不同酰基化修饰肽段可以用来测试sirtuin的不同去酰基化酶活,该方法可以用来对不同的sirtuin进行酶活筛选,具有普适性;而且,该方法联合应用易错PCR和AMC荧光法, 可以大批量地同时测定多个蛋白,测试结果可定量。综上,相较于其他方法,本研究的方法同时具备简便、普适、高通量等优点。This method screens sirtuin enzymatic activity mutants, performs in situ expression and activity measurement in E. coli, minus the tedious protein purification and transfer process, and is very simple; moreover, the use of different acylation modified peptides can be used to test the activity of sirtuin This method can be used to screen different sirtuins for enzyme activity based on different deacylase activities, and is universal. Moreover, this method combines error-prone PCR and AMC fluorescence methods, and can simultaneously measure multiple proteins in large batches. Test results can be quantified. In summary, compared with other methods, the method in this study has the advantages of simplicity, universality, and high throughput.
本申请一实施方式还提供一种sirtuin突变体,由上述sirtuin突变体的筛选方法制备得到。该sirtuin突变体能够在去酰基化酶活改变上应用。One embodiment of the present application also provides a sirtuin mutant, which is prepared by the above-mentioned screening method for sirtuin mutants. This sirtuin mutant can be used to alter deacylase activity.
其中,由野生型sirtuin的如下位点中的至少一个发生突变得到:第76位的丙氨酸、第91位的苯丙氨酸、第147位的组氨酸、第155位的半胱氨酸、第185位的脯氨酸。Among them, it is obtained by mutating at least one of the following sites of wild-type sirtuin: alanine at position 76, phenylalanine at position 91, histidine at position 147, and cysteine at position 155 Acid, proline at position 185.
进一步地,第76位的丙氨酸发生如下突变中的一种:A76P、A76V。Furthermore, the alanine at position 76 undergoes one of the following mutations: A76P, A76V.
第91位的苯丙氨酸发生如下突变中的一种:F91L、F91S。The phenylalanine at position 91 has one of the following mutations: F91L, F91S.
第147位的组氨酸发生如下突变中的一种:H147L、H147Y。The histidine at position 147 has one of the following mutations: H147L, H147Y.
第155位的半胱氨酸发生如下突变中的一种:C155R、C155S、C155Y。The cysteine at position 155 has one of the following mutations: C155R, C155S, or C155Y.
第185位的脯氨酸发生如下突变中的一种:P185L、P185T。The proline at position 185 has one of the following mutations: P185L, P185T.
以下为具体实施例部分。The following is the specific examples section.
实施例中采用试剂和仪器如非特别说明,均为本领域常规选择。实施例中未注明具体条件的实验方法,通常按照常规条件,例如文献、书本中所述的条件或者试剂盒生产厂家推荐的方法实现。实施例中所使用的试剂均为市售。Unless otherwise specified, the reagents and instruments used in the examples are conventional choices in the art. Experimental methods that do not indicate specific conditions in the examples are usually implemented according to conventional conditions, such as conditions described in literature and books or methods recommended by kit manufacturers. The reagents used in the examples are all commercially available.
实施例1获得随机点突变体库Example 1 Obtaining a random point mutant library
选定沙门氏菌来源的sirtuin蛋白STM1221为例,对其特定位点区域内(V43-N240)进行随机点突变,获得具有1-3个突变氨基酸的随机点突变体库。具体操作如下:The sirtuin protein STM1221 derived from Salmonella was selected as an example, and random point mutations were carried out in its specific site region (V43-N240) to obtain a random point mutant library with 1-3 mutated amino acids. The specific operations are as follows:
通过先前的研究确定了sirtuin蛋白STM1221有较高的去乙酰化酶活,通过序列比对,选择V43-N240这一段作为可能的活性位点存在基因片段。将这 段基因构建到Kan抗性的pET28a-STM1221质粒上,采用第一引物对(序列如SEQ ID No.1~SEQ ID No.2所示)通过EP-PCR(即易错PCR)扩增出每个产物带有2-4个点突变的STM1221关键区域的DNA片段(简称突变片段)。同时以pTEV5-STM1221为模板,采用第二引物对(序列如SEQ ID No.3~SEQ ID No.4所示)利用高保真酶扩增出除关键区域以外的STM1221连同表达载体的片段(简称载体片段),并用DpnI消化模板。对突变片段及骨架片段进行凝胶电泳成像。突变片段及骨架片段的凝胶电泳图详见图3。图3为片段和载体PCR产物凝胶电泳图,其中,条带1表示突变片段,条带2表示载体片段,条带3为1.1kb标准品。PCR所用引物详见表1。EP-PCR体系配方详见表2。Through previous studies, it was determined that the sirtuin protein STM1221 has high deacetylase activity. Through sequence comparison, the V43-N240 segment was selected as a possible active site gene fragment. This gene was constructed into the Kan-resistant pET28a-STM1221 plasmid, and amplified by EP-PCR (error-prone PCR) using the first primer pair (sequences shown in SEQ ID No. 1 ~ SEQ ID No. 2) The DNA fragment of the key region of STM1221 with 2-4 point mutations in each product (referred to as the mutation fragment) was obtained. At the same time, pTEV5-STM1221 was used as a template, and the second primer pair (sequences are shown in SEQ ID No. 3 ~ SEQ ID No. 4) was used to amplify STM1221 except the key region together with the fragment of the expression vector (abbreviated to vector fragment) and digest the template with DpnI. Gel electrophoresis imaging of mutant fragments and backbone fragments. The gel electrophoresis patterns of the mutant fragments and backbone fragments are shown in Figure 3. Figure 3 is a gel electrophoresis diagram of fragment and vector PCR products, in which band 1 represents the mutant fragment, band 2 represents the vector fragment, and band 3 is the 1.1 kb standard. The primers used in PCR are detailed in Table 1. The EP-PCR system formula is detailed in Table 2.
随后,利用重组酶连接突变片段及载体片段,转化到DH5α感受态,并利用Amp抗性筛选出阳性克隆,即目标克隆。挑取10个左右克隆,测序,检验确实发生关键区域2-4个位点的随机点突变。测序结果详见图4,从图4可以看出,9个克隆中有8个发生了1-4个位点的随机点突变。随后,从DH5α菌斑中提取混合质粒,转化到BL21中。在Amp平板上成功生长的BL21克隆随机挑选测序,检验突变结果同样符合预期。Subsequently, recombinase was used to connect the mutant fragment and the vector fragment, transformed into DH5α competent state, and Amp resistance was used to screen out positive clones, that is, target clones. Pick about 10 clones, sequence them, and verify that random point mutations at 2-4 sites in the critical region have indeed occurred. The sequencing results are detailed in Figure 4. It can be seen from Figure 4 that 8 of the 9 clones have random point mutations of 1-4 sites. Subsequently, mixed plasmids were extracted from DH5α plaques and transformed into BL21. The BL21 clones that successfully grew on the Amp plate were randomly selected and sequenced, and the mutation results were also in line with expectations.
表1克隆构建所用引物序列表Table 1 Primer sequence list used for cloning construction
PrimersPrimers SequenceSequence
STM1221(43-240)-Frag-FSTM1221(43-240)-Frag-F ggaaatgatggaaaacccaaga(SEQ ID No.1)ggaaatgatggaaaacccaaga(SEQ ID No.1)
STM1221(43-240)-Frag-RSTM1221(43-240)-Frag-R ccgacttggcttggctcaag(SEQ ID No.2)ccgacttggcttggctcaag(SEQ ID No.2)
STM1221(43-240)-Vect-FSTM1221(43-240)-Vect-F cttgagccaagccaagtcgg(SEQ ID No.3)cttgagccaagccaagtcgg(SEQ ID No.3)
STM1221(43-240)-Vect-RSTM1221(43-240)-Vect-R tcttgggttttccatcatttcc(SEQ ID No.4)tcttgggttttccatcatttcc(SEQ ID No.4)
表2 EP-PCR体系配方Table 2 EP-PCR system formula
Figure PCTCN2022119322-appb-000003
Figure PCTCN2022119322-appb-000003
实施例2原位表达STM1221突变体库并获取蛋白Example 2 In situ expression of STM1221 mutant library and acquisition of protein
(1)获得在BL21中的STM1221随机突变体库后,将克隆全部挑到96孔板的各个孔中,Amp抗性LB液体培养基中培养,37℃,800rpm摇菌过夜。之后再将饱和菌液1:20转接到新的96孔板中继续摇菌,约1.5-2h后,OD达到0.4,加入终浓度为0.3mM的IPTG,25℃诱导蛋白表达。16h后,孔板4000rpm,4℃离心10min,获得沉淀,再每孔加入10μL细胞裂解液:终浓度为0.5%~2%的非变性去垢剂及pH7.6、25mM Tris-HCl缓冲液),300rpm振荡10min,获得细胞裂解产物,之后4000rpm,4℃离心10min,获得含目标sirtuin蛋白的裂解上清液,并对裂解上清液进行凝胶电泳成像。(1) After obtaining the STM1221 random mutant library in BL21, pick all clones into each well of a 96-well plate, culture them in Amp-resistant LB liquid medium, and shake at 800 rpm at 37°C overnight. Then transfer the saturated bacterial solution 1:20 to a new 96-well plate and continue shaking the bacteria. After about 1.5-2 hours, the OD reaches 0.4. Add IPTG with a final concentration of 0.3mM and induce protein expression at 25°C. After 16 hours, centrifuge the well plate at 4000 rpm and 4°C for 10 minutes to obtain the precipitate, and then add 10 μL of cell lysis solution to each well: non-denaturing detergent with a final concentration of 0.5% to 2% and pH7.6, 25mM Tris-HCl buffer) , shake at 300 rpm for 10 min to obtain the cell lysate, then centrifuge at 4000 rpm and 4°C for 10 min to obtain the lysis supernatant containing the target sirtuin protein, and perform gel electrophoresis imaging on the lysis supernatant.
(2)参考本实施例的步骤(1)对按照相同方法转化了pTEV5-SIRT2质粒的大肠杆菌BL21诱导后的菌液进行裂解,得到含有SIRT2蛋白的裂解上清,并对裂解上清液进行凝胶电泳成像。裂解上清液的凝胶电泳图详见图5,图5中以SIRT2蛋白为例。图5中,条带1为marker,条带2、3为0mM IPTG诱导的裂解产物上清液蛋白条带,条带4、5为0.3mM IPTG诱导16h后的裂解产物上清液蛋白条带。从图5可以看出,IPTG诱导后的BL21细胞裂解产物的 上清液,能够明显示出SIRT2的目标条带,证明此方法能够将细胞内的蛋白,即sirtuin释放到上清液中。(2) Refer to step (1) of this example to lyse the induced bacterial liquid of E. coli BL21 transformed with pTEV5-SIRT2 plasmid according to the same method to obtain a lysed supernatant containing SIRT2 protein, and conduct lysis on the lysed supernatant. Gel electrophoresis imaging. The gel electrophoresis pattern of the lysis supernatant is shown in Figure 5 for details. Figure 5 takes SIRT2 protein as an example. In Figure 5, band 1 is the marker, bands 2 and 3 are the protein bands of the supernatant of the lysate induced by 0mM IPTG, and bands 4 and 5 are the protein bands of the supernatant of the lysate induced by 0.3mM IPTG for 16 hours. . As can be seen from Figure 5, the supernatant of the BL21 cell lysate after IPTG induction can clearly show the target band of SIRT2, proving that this method can release the intracellular protein, namely sirtuin, into the supernatant.
(3)在384孔板中每孔加入含AMC-peptide Ac底物的反应液10μL,包括2μL 10×Tris缓冲液(0.5M Tris-HCl,pH 8.0,1.37M NaCl,27mM KCl,10mM MgCl 2),1μL 20mM NAD +,0.8μL 5mM AMC-peptide Ac,6.2μL ddH 2O。之后,加入10μL用ddH 2O或lysis buffer稀释的STM1221或SIRT2蛋白溶液,反应体系总体积为20μL,Tris终浓度为50mM,NAD +终浓度为1mM,肽段终浓度为200μM,sirtuin蛋白终浓度为5μM。37℃,300rpm振荡反应1h后,每孔加入20μL 2×终止液(2.0mg/mL trypsin,4mM NAM in 2×Tris缓冲液),25℃静置反应1.5h。之后,利用酶标仪,在360nm激发,460nm发射波长下检测荧光强度,以不含sirtuin的反应体系为阴性对照。测定结果详见图12。图12为裂解液对STM1221和SIRT2的酶活影响图。 (3) Add 10 μL of reaction solution containing AMC-peptide Ac substrate to each well of the 384-well plate, including 2 μL of 10×Tris buffer (0.5M Tris-HCl, pH 8.0, 1.37M NaCl, 27mM KCl, 10mM MgCl 2 ), 1 μL 20mM NAD + , 0.8 μL 5mM AMC-peptide Ac , 6.2 μL ddH 2 O. After that, add 10μL of STM1221 or SIRT2 protein solution diluted with ddH 2 O or lysis buffer. The total volume of the reaction system is 20μL. The final concentration of Tris is 50mM, the final concentration of NAD + is 1mM, the final concentration of the peptide is 200μM, and the final concentration of sirtuin protein is 20μL. is 5μM. After shaking for 1 hour at 37°C and 300 rpm, add 20 μL of 2× stop solution (2.0 mg/mL trypsin, 4mM NAM in 2× Tris buffer) to each well, and let the reaction stand for 1.5 hours at 25°C. Afterwards, a microplate reader was used to detect the fluorescence intensity at 360nm excitation and 460nm emission wavelengths, and the reaction system without sirtuin was used as a negative control. The measurement results are detailed in Figure 12. Figure 12 shows the effect of lysate on the enzyme activities of STM1221 and SIRT2.
从图12可以看出,sirtuin在ddH 2O和裂解液中与肽段反应后的荧光强度相当,说明本实施例的裂解液没有影响sirtuin的酶活。 It can be seen from Figure 12 that the fluorescence intensity of sirtuin after reacting with the peptide fragment in ddH 2 O and lysis solution is similar, indicating that the lysis solution in this example does not affect the enzyme activity of sirtuin.
实施例3利用AMC-peptide Ac检测STM1221突变体库的去乙酰化活性 Example 3 Using AMC-peptide Ac to detect the deacetylation activity of STM1221 mutant library
将实施例2得到的上述突变体库实验每96块孔板约得到80个突变蛋白,因此,通过扩大培养菌落数,于12块96孔板得到总数为1000的STM1221突变体库。后续检测所用的AMC-ARK Ac肽段(即受乙酰化修饰的AMC标记肽段)由安徽国平药业有限公司合成。 The above mutant library experiment obtained in Example 2 yielded approximately 80 mutant proteins per 96-well plate. Therefore, by expanding the number of culture colonies, a total of 1,000 STM1221 mutant libraries were obtained in 12 96-well plates. The AMC-ARK Ac peptide used for subsequent detection (i.e., the AMC-labeled peptide modified by acetylation) was synthesized by Anhui Guoping Pharmaceutical Co., Ltd.
为了检测裂解液是否会对蛋白酶活造成影响,首先利用转化了野生型STM1221的BL21进行裂解和酶活检测实验。利用实施例2所用的细胞裂解液(即lysis buffer)裂解BL21细菌,并使用裂解产物检测去乙酰化酶活。如图 六所示,直接取裂解产物进行AMC荧光检测,但阴性对照组BL21的裂解产物也会与肽段反应产生荧光,热灭活之后不再发生反应,证明BL21的细胞碎片中可能有其他酶会产生干扰。而对裂解产物进行离心之后只取用上清液进行AMC荧光检测,只有转化了STM1221的BL21裂解液才会与AMC肽段反应产生荧光。BL21裂解产物与肽段反应的荧光检测结果详见图6。图6中,a图表示全细胞裂解液与AMC肽段反应的结果,b图表示裂解液上清部分与AMC肽段反应的结果。AMC荧光检测体系配方详见表3。In order to test whether the lysis solution would affect the protease activity, BL21 transformed with wild-type STM1221 was first used to conduct lysis and enzyme activity detection experiments. The BL21 bacteria were lysed using the cell lysis solution (i.e., lysis buffer) used in Example 2, and the lysate product was used to detect sirtuin activity. As shown in Figure 6, the cleavage products were directly taken for AMC fluorescence detection, but the cleavage products of BL21 in the negative control group also reacted with the peptides to produce fluorescence, and no longer reacted after heat inactivation, proving that there may be other components in the cell fragments of BL21. Enzymes can interfere. After centrifuging the lysate, only the supernatant was used for AMC fluorescence detection. Only the BL21 lysate transformed with STM1221 will react with the AMC peptide to produce fluorescence. The fluorescence detection results of the reaction between BL21 cleavage products and peptide fragments are shown in Figure 6. In Figure 6, Figure a shows the results of the reaction between whole cell lysate and AMC peptides, and Figure B shows the results of the reaction between the supernatant of the lysate and AMC peptides. The AMC fluorescence detection system formula is detailed in Table 3.
表3 AMC荧光检测体系配方Table 3 AMC fluorescence detection system formula
Figure PCTCN2022119322-appb-000004
Figure PCTCN2022119322-appb-000004
目前已有方法利用合成的AMC底物体外检测纯化得到的sirtuin蛋白的活性,本研究也利用野生型STM1221将两种方法进行对比。在384孔板中每孔加入含AMC肽段的反应液10μL,包括2μL 10×Tris缓冲液(0.5M Tris-HCl,pH8.0,1.37M NaCl,27mM KCl,10mM MgCl 2),1μL 20mM NAD +,0.8μL 5mM AMC-peptide Ac,6.2μL ddH 2O。之后,加入纯化的sirtuin蛋白或者上一步含蛋 白的裂解产物上清液10μL。采用2L大肠杆菌BL21进行细胞裂解,最终裂解至少能获得1mL浓度为100μM的sirtuin蛋白。若将培养体系缩小到一块96孔板,200μL菌液至少能获得10μL浓度1μM的蛋白。因此,选择了初始浓度为1μM或5μM的纯化STM1221蛋白作为对比。因为SIRT2蛋白也具有很强的去乙酰化能力,故加入纯化的SIRT2或BL21-SIRT2裂解产物一并作为对照。反应总体积20μL,肽段终浓度为200μM。37℃,300rpm振荡反应1h。之后,每孔加入20μL 2×终止液(2.0mg/mL trypsin,4mM NAM in Tris assay buffer),25℃静置反应1.5h。之后,利用酶标仪,在360nm激发,460nm发射波长下检测荧光强度。测定结果如表4和图7所示。表4为AMC荧光检测各突变株数值,以1块96孔板为例。图7为纯化sirtuin蛋白或含sirtuin的细胞裂解上清液与底物反应的荧光检测结果。 Currently, there are methods that use synthetic AMC substrates to detect the activity of purified sirtuin proteins in vitro. This study also used wild-type STM1221 to compare the two methods. Add 10 μL of reaction solution containing AMC peptide to each well of the 384-well plate, including 2 μL of 10×Tris buffer (0.5M Tris-HCl, pH8.0, 1.37M NaCl, 27mM KCl, 10mM MgCl 2 ), 1 μL of 20mM NAD + , 0.8 μL 5mM AMC-peptide Ac , 6.2 μL ddH 2 O. After that, add 10 μL of purified sirtuin protein or the protein-containing lysate supernatant from the previous step. Use 2L E. coli BL21 for cell lysis. The final lysis can obtain at least 1 mL of sirtuin protein with a concentration of 100 μM. If the culture system is reduced to a 96-well plate, 200 μL of bacterial solution can obtain at least 10 μL of protein with a concentration of 1 μM. Therefore, purified STM1221 protein with an initial concentration of 1 μM or 5 μM was selected as a comparison. Because SIRT2 protein also has strong deacetylation ability, purified SIRT2 or BL21-SIRT2 cleavage product was added as a control. The total reaction volume was 20 μL, and the final peptide concentration was 200 μM. 37℃, 300rpm shaking reaction for 1h. After that, 20 μL of 2× stop solution (2.0 mg/mL trypsin, 4 mM NAM in Tris assay buffer) was added to each well, and the reaction was allowed to stand at 25°C for 1.5 h. Afterwards, use a microplate reader to detect the fluorescence intensity at 360nm excitation and 460nm emission wavelengths. The measurement results are shown in Table 4 and Figure 7. Table 4 shows the values of each mutant strain detected by AMC fluorescence, taking a 96-well plate as an example. Figure 7 shows the fluorescence detection results of the reaction between purified sirtuin protein or sirtuin-containing cell lysate supernatant and substrate.
表4Table 4
Plate 9Plate 9 11 22 33 44 55 66 77 88 99 1010 1111 1212
AA 4634546345 110776110776 6622566225 451517451517 142592142592 546643546643 153566153566 9371393713 312580312580 113637113637 9907699076 4964949649
BB 457713457713 394376394376 456787456787 156837156837 5705257052 7819578195 468420468420 123861123861 448189448189 194200194200 163502163502 3314833148
CC 4362843628 447466447466 417861417861 188219188219 430785430785 512417512417 131285131285 7864078640 502496502496 203276203276 221562221562 4164041640
DD 5023450234 145617145617 108342108342 166403166403 112513112513 173697173697 8771587715 6108061080 361874361874 454928454928 427015427015 3579535795
EE 439686439686 145898145898 172811172811 445285445285 364610364610 151662151662 261912261912 113259113259 478781478781 314798314798 319949319949 623942623942
FF 505759505759 484979484979 145862145862 270170270170 495971495971 529583529583 318542318542 301906301906 361055361055 9703597035 538771538771 563119563119
GG 5170251702 5429754297 498888498888 7545675456 509944509944 417199417199 251863251863 273607273607 264120264120 234231234231 226971226971 562954562954
HH 484050484050 182736182736 507296507296 112210112210 162246162246 265215265215 382770382770 492457492457 197407197407 261659261659 154586154586 618305618305
从图7可以看出,1μM或5μM纯化的STM1221或SIRT2与底物反应都有荧光检出,而包含这些蛋白的裂解液与肽段反应之后显示出更强的荧光,且转化空白质粒的BL21裂解产物没有与底物反应,证明了细胞裂解检测酶活的可行性,并且该方法相对于纯化蛋白、体外检测,工作量大幅降低,也为高通量筛选提供了条件。As can be seen from Figure 7, fluorescence was detected when 1 μM or 5 μM purified STM1221 or SIRT2 reacted with the substrate, while the lysate containing these proteins showed stronger fluorescence after reacting with the peptide fragments, and BL21 transformed into the blank plasmid The cleavage product did not react with the substrate, which proved the feasibility of cell lysis to detect enzyme activity. Compared with purified proteins and in vitro detection, this method significantly reduces the workload, and also provides conditions for high-throughput screening.
反应产物的荧光强度与sirtuin的去乙酰化酶活性成正比,以转入空白质粒的BL21裂解液为负对照,转入野生型pTEV5-STM1221质粒的BL21裂解液 为正对照,检测上述建立的12块96孔板的STM1221突变体库,对STM1221的去乙酰化活性进行初步定量,得到480株酶活性改变较大的克隆菌株。突变体库荧光检测结果示例详见图8,图8中,灰色深浅代表荧光强度,最后一列分别为BL21阴性对照(4个孔)和W.T.STM1221阳性对照(4个孔)。The fluorescence intensity of the reaction product is proportional to the deacetylase activity of sirtuin. The BL21 lysate transferred into the blank plasmid is used as a negative control, and the BL21 lysate transferred into the wild-type pTEV5-STM1221 plasmid is used as a positive control. The 12 established above are detected. Using the STM1221 mutant library in a 96-well plate, the deacetylation activity of STM1221 was preliminarily quantified, and 480 cloned strains with large changes in enzyme activity were obtained. An example of the fluorescence detection results of the mutant library is shown in Figure 8. In Figure 8, the shades of gray represent fluorescence intensity, and the last column is the BL21 negative control (4 wells) and W.T.STM1221 positive control (4 wells).
实施例4对STM1221突变体进行测序得到关键活性位点信息并验证Example 4 Sequencing the STM1221 mutant to obtain key active site information and verify it
选取去乙酰化酶活降低>80%的STM1221克隆进行测序,约500个克隆,排除单个克隆点突变个数大于5的克隆后,得到了176个突变位点。STM1221 clones with deacetylase activity reduced by more than 80% were selected for sequencing, about 500 clones, and after excluding clones with more than 5 point mutations in a single clone, 176 mutation sites were obtained.
表5示出一些突变体位点及荧光检测结果,为同一批次实验中测序检测到的单点克隆。在已建立的包含约1800个克隆的突变体库中,通过随机突变得到STM1221-H147L和STM1221-H147Y两个单位点突变体,其酶活荧光检测结果如图九所示,去乙酰化能力下降到与阴性对照相当。而STM1221中的H147位点已被证实是sirtuin蛋白中绝对保守的决定去酰基化活性的位点,因此该位点成功突变并被检测到酶活性完全消失证明了该方法筛选突变体的可行性。除此之外,还获得了一些其他的突变体如STM1221-C176G/A212V,其酶活大幅降低。对荧光检测突变体库酶活及位点信息进行检测,结果详见图9,图9为荧光检测突变体库酶活及位点信息。图9中,a图为对突变体库进行荧光检测得到的结果,b图为对突变体库进行重复荧光检测得到的结果。从图9a可以看出,对荧光大幅降低的克隆测序得到点突变信息,而这些克隆在BL21中再次诱导表达,裂解检测荧光,其结果如图9b所示,与首次检测一致,可见荧光检测突变体准确性较高,且重复性较好。Table 5 shows some mutant sites and fluorescence detection results, which are single-point clones detected by sequencing in the same batch of experiments. In the established mutant library containing about 1800 clones, two single point mutants, STM1221-H147L and STM1221-H147Y, were obtained through random mutation. The enzyme activity fluorescence detection results are shown in Figure 9. The deacetylation ability is reduced. to be equivalent to the negative control. The H147 site in STM1221 has been confirmed to be an absolutely conserved site in the sirtuin protein that determines the deacylation activity. Therefore, the successful mutation of this site and the complete disappearance of the enzyme activity was detected, which proves the feasibility of this method to screen mutants. . In addition, some other mutants such as STM1221-C176G/A212V were also obtained, whose enzyme activity was significantly reduced. The enzyme activity and site information of the fluorescence detection mutant library were detected. The results are shown in Figure 9. Figure 9 shows the enzyme activity and site information of the fluorescence detection mutant library. In Figure 9, picture a is the result of fluorescence detection of the mutant library, and picture b is the result of repeated fluorescence detection of the mutant library. As can be seen from Figure 9a, the point mutation information was obtained by sequencing the clones whose fluorescence was greatly reduced, and these clones were induced to express again in BL21, and the fluorescence was detected by lysing. The results are shown in Figure 9b, which is consistent with the first detection. It can be seen that the mutation was detected by fluorescence. The accuracy is higher and the repeatability is better.
表5单位点突变体的位点和荧光检测结果Table 5 Site and fluorescence detection results of single point mutants
Figure PCTCN2022119322-appb-000005
Figure PCTCN2022119322-appb-000005
对sirtuin酶活调控位点进行分析,结果详见图10。图10为sirtuin酶活调控位点分析图。对于相同程度的去乙酰化活力改变来说,由于一个位点突变引起的酶活降低,和由于3个位点突变造成的酶活改变,前者的位点对于STM1221的去乙酰化活力的决定作用更大。因此,根据突变位点的权重进行打分,得到了氨基酸位点的分数信息,分值越高,其活性位点决定作用越大。由位点信息可以推测,STM1221中的W67、V75、H227等氨基酸对于其去乙酰化活性可能有决定性作用。后续工作中,通过序列比对,在其他典型的sirtuin 如人源SIRT2、SIRT5,以及大肠杆菌cobB等中,找到相应的氨基酸位点进行突变,验证活性位点。The regulatory sites for sirtuin enzyme activity were analyzed. The results are shown in Figure 10. Figure 10 is an analysis diagram of the regulatory sites of sirtuin enzyme activity. For the same degree of change in deacetylation activity, the decrease in enzyme activity due to one site mutation and the change in enzyme activity due to three site mutations, the former site determines the deacetylation activity of STM1221 bigger. Therefore, score information is obtained based on the weight of the mutation site, and the score information of the amino acid site is obtained. The higher the score, the greater its determining role in the active site. It can be speculated from the site information that amino acids such as W67, V75, and H227 in STM1221 may play a decisive role in its deacetylation activity. In the follow-up work, through sequence comparison, the corresponding amino acid sites in other typical sirtuins such as human SIRT2, SIRT5, and E. coli cobB were found for mutation and the active site was verified.
具体地,在已建立的包含约1800个克隆的突变体库中,通过荧光检测发现了大量去乙酰化活力大幅降低的克隆,对这些克隆进行测序得到关键区域内的位点突变信息,只考虑单个克隆中包含四个及以下点突变的情况,整理统计这些突变位点信息并根据它们的权重进行打分,即一个克隆中只有一个点突变,该位点得1分,一个克隆中有四个点突变,则每个位点打分0.25。统计结果如下图10,有5个位点的分值在4.5以上,其中就包括了在所有sirtuin蛋白中绝对保守并且决定了sirtuin去酰基化活性的His-147位点,进一步证实了本研究的随机点突变建库并高通量荧光筛选的方法对于寻找活性位点是可行的。除了Ala-76位氨基酸,这一位点在CobB和Sir2Tm蛋白的结构相关报道中有提到过,可能与CobB的去巴豆酰化和Sir2Tm的去丙酰化活性相关,其余三个位点,包括Phe-91、Cys-155和Pro-185,它们在其他sirtuin中对应的位点均没有报道过,因此,本申请的方法对于高效地发现全新的潜在活性位点具有重大意义。Specifically, in the established mutant library containing about 1,800 clones, a large number of clones with significantly reduced deacetylation activity were discovered through fluorescence detection. These clones were sequenced to obtain site mutation information in the key regions. Only consideration was given to If a single clone contains four or less point mutations, the information on these mutation sites will be compiled and scored according to their weights. That is, if there is only one point mutation in a clone, the site will score 1 point, and if there are four in a clone For point mutations, each site is scored 0.25. The statistical results are shown in Figure 10 below. There are 5 sites with scores above 4.5, including the His-147 site that is absolutely conserved in all sirtuin proteins and determines the sirtuin deacylation activity, further confirming the results of this study. The method of random point mutation library construction and high-throughput fluorescence screening is feasible to find active sites. In addition to the Ala-76 amino acid, this site has been mentioned in reports on the structure of CobB and Sir2Tm proteins, and may be related to the decrotonylation of CobB and the depropionylation activity of Sir2Tm. The remaining three sites, Including Phe-91, Cys-155 and Pro-185, their corresponding sites in other sirtuins have not been reported. Therefore, the method of this application is of great significance for efficiently discovering new potential active sites.
实施例5Example 5
Sirtuin是一类具有多种去酰基化活性的酶,不但能够去除赖氨酸上的乙酰基,还能去除琥珀酰、巴豆酰、长链脂肪酰等。合成赖氨酸上带不同酰基修饰的AMC-peptide Acy肽段,可用于检测sirtuin蛋白的其他去酰基化活性,得到其他去酰基化的活性位点信息。因此,本申请所用的方法并不局限于去乙酰化活性检测,亦可以应用于sirtuin的其他去酰基化活性检测,均应包含在本发明的保护范围之内。 Sirtuin is a type of enzyme with multiple deacylation activities. It can not only remove the acetyl group on lysine, but also remove succinyl, crotonyl, long-chain fatty acyl, etc. Synthesizing AMC-peptide Acy peptides with different acyl modifications on lysine can be used to detect other deacylation activities of sirtuin proteins and obtain other deacylation active site information. Therefore, the method used in this application is not limited to the detection of deacetylation activity, and can also be applied to the detection of other deacylation activities of sirtuin, which should be included in the protection scope of the present invention.
本实施例按照前述实施例相同的方法,合成了琥珀酰化的AMC-peptide Su肽段,其与转化了sirtuin蛋白表达载体的细胞裂解产物反应,同样产生荧光。测定结果详见图11。图11为细胞裂解液与AMC-peptide Ac或AMC-peptide Su肽段反应的荧光检测结果。如图11所示,转化了空白质粒pUC19的BL21裂解液不与任何酰基化肽段反应。具有多重活力的STM1221可以与两种肽段反应产生荧光,去乙酰化酶SIRT2裂解液只与AMC-peptide Ac反应,而去琥珀酰化酶SIRT5的裂解产物与AMC-peptide Su反应并产生强烈的荧光,证明了这些底物的反应特异性,可用于检测其他酶活,表征其他突变体库,得到其他去酰基化的活性位点信息。 In this example, the succinylated AMC-peptide Su peptide segment was synthesized according to the same method as the previous example, and reacted with the cell lysate transformed with the sirtuin protein expression vector to produce fluorescence. The measurement results are detailed in Figure 11. Figure 11 shows the fluorescence detection results of the reaction between cell lysate and AMC-peptide Ac or AMC-peptide Su peptide segments. As shown in Figure 11, the BL21 lysate transformed with blank plasmid pUC19 did not react with any acylated peptides. STM1221, which has multiple activities, can react with two peptides to produce fluorescence. The cleavage solution of deacetylase SIRT2 only reacts with AMC-peptide Ac , while the cleavage product of desuccinylase SIRT5 reacts with AMC-peptide Su and produces strong fluorescence. Fluorescence, demonstrating the reaction specificity of these substrates, can be used to detect other enzyme activities, characterize other mutant libraries, and obtain other deacylated active site information.
以上所述实施例仅表达了本发明的几种实施方式,其描述较为具体和详细,但并不能因此而理解为对发明专利范围的限制。应当指出的是,对于本领域的普通技术人员来说,在不脱离本发明构思的前提下,还可以做出若干变形和改进,这些都属于本发明的保护范围。因此,本发明专利的保护范围应以所附权利要求为准。The above-mentioned embodiments only express several implementation modes of the present invention, and their descriptions are relatively specific and detailed, but they should not be construed as limiting the scope of the invention. It should be noted that, for those of ordinary skill in the art, several modifications and improvements can be made without departing from the concept of the present invention, and these all belong to the protection scope of the present invention. Therefore, the scope of protection of the patent of the present invention should be determined by the appended claims.

Claims (13)

  1. 一种sirtuin突变体的筛选方法,其特征在于,包括如下步骤:A method for screening sirtuin mutants, which is characterized by including the following steps:
    采用易错PCR技术构建sirtuin突变体库;Error-prone PCR technology was used to construct a sirtuin mutant library;
    裂解所述sirtuin突变体库中各突变体,固液分离,收集裂解上清液;Each mutant in the sirtuin mutant library is lysed, solid-liquid separation is performed, and the lysis supernatant is collected;
    采用AMC荧光法高通量测定所述裂解上清液的sirtuin去酰基化活性,获得所需去酰基化活性的sirtuin突变株。The AMC fluorescence method is used to measure the sirtuin deacylation activity of the lysis supernatant in a high-throughput manner, and a sirtuin mutant strain with the required deacylation activity is obtained.
  2. 根据权利要求1所述的sirtuin突变体的筛选方法,其特征在于,采用初始sirtuin构建所述sirtuin突变体库,所述初始sirtuin基因包括连接的关键区域片段和非关键区域片段,采用易错PCR构建所述sirtuin突变体库的步骤包括:The screening method for sirtuin mutants according to claim 1, characterized in that the sirtuin mutant library is constructed using initial sirtuin, the initial sirtuin gene includes connected critical region fragments and non-critical region fragments, and error-prone PCR is used The steps to construct the sirtuin mutant library include:
    以携带有所述初始sirtuin基因的质粒为模板进行易错PCR,得到突变片段,所述突变片段为发生点突变的所述关键区域片段;Using the plasmid carrying the initial sirtuin gene as a template, error-prone PCR is performed to obtain a mutant fragment, which is the key region fragment where point mutations occur;
    以携带有表达载体的质粒为模板并在高保真酶的作用下进行PCR扩增,得到表达载体片段,所述表达载体用于表达所述初始sirtuin,所述表达载体片段由用于表达sirtuin蛋白的表达和复制原件构成,携带有所述表达载体的质粒与携带有所述初始sirtuin基因的质粒的抗性基因不同;Using the plasmid carrying the expression vector as a template and performing PCR amplification under the action of a high-fidelity enzyme, an expression vector fragment is obtained. The expression vector is used to express the initial sirtuin. The expression vector fragment is used to express the sirtuin protein. The expression and replication originals are composed of the plasmid carrying the expression vector and the resistance gene of the plasmid carrying the initial sirtuin gene is different;
    将所述突变片段及所述表达载体片段重组连接后转入宿主细胞中,得到所述sirtuin突变体库。The mutant fragment and the expression vector fragment are recombinantly ligated and then transferred into host cells to obtain the sirtuin mutant library.
  3. 根据权利要求2所述的sirtuin突变体的筛选方法,其特征在于,采用第一引物对进行易错PCR,所述第一引物对的序列如SEQ ID No.1~SEQ ID No.2所示。The screening method for sirtuin mutants according to claim 2, characterized in that error-prone PCR is performed using a first primer pair, and the sequence of the first primer pair is as shown in SEQ ID No. 1 ~ SEQ ID No. 2 .
  4. 根据权利要求2所述的sirtuin突变体的筛选方法,其特征在于,所述以表达载体的质粒为模板并在高保真酶的作用下进行PCR扩增的步骤中,采用第二引物对进行PCR扩增,所述第二引物对的序列如SEQ ID No.3~SEQ ID No.4所 示。The screening method for sirtuin mutants according to claim 2, characterized in that, in the step of using the plasmid of the expression vector as a template and performing PCR amplification under the action of a high-fidelity enzyme, a second primer pair is used to perform PCR Amplification, the sequence of the second primer pair is as shown in SEQ ID No. 3 ~ SEQ ID No. 4.
  5. 根据权利要求2所述sirtuin的突变体的筛选方法,其特征在于,以目前控制的1-4个碱基/kb突变频率下计算,构建10倍覆盖率的突变体库,可以筛选到sirtuin关键区域的氨基酸位点,其中,所述突变体库有2,000个-6,000个克隆。The screening method for sirtuin mutants according to claim 2, characterized in that, based on the currently controlled mutation frequency of 1-4 bases/kb, a mutant library with 10 times coverage can be constructed to screen out the key sirtuin Amino acid positions in the region, where the mutant library has 2,000-6,000 clones.
  6. 根据权利要求1所述的sirtuin突变体的筛选方法,其特征在于,裂解所述sirtuin突变体库中各突变体的步骤中,采用细胞裂解液进行裂解,所述细胞裂解液包括:非变性去垢剂、pH7~8的缓冲液,所述细胞裂解液与含有所述待测细胞的菌液的体积比为1:20~1:40,裂解温度为20℃~30℃,裂解时间为10min~20min。The screening method for sirtuin mutants according to claim 1, characterized in that, in the step of lysing each mutant in the sirtuin mutant library, a cell lysis solution is used for lysis, and the cell lysis solution includes: non-denaturing Scale agent, buffer solution with pH 7 to 8, the volume ratio of the cell lysate to the bacterial liquid containing the cells to be tested is 1:20 to 1:40, the lysis temperature is 20°C to 30°C, and the lysis time is 10 minutes ~20min.
  7. 根据权利要求1所述的sirtuin突变体的筛选方法,其特征在于,所述采用AMC荧光法测定所述裂解上清液的sirtuin去酰基化活性的步骤包括:The method for screening sirtuin mutants according to claim 1, wherein the step of using the AMC fluorescence method to measure the sirtuin deacylation activity of the lysis supernatant includes:
    将AMC肽段反应液与所述裂解上清液混合,于37℃、200rpm~300rpm下反应1h,得到第一处理液,所述AMC肽段反应液含有带有酰基修饰的AMC肽段,所述AMC肽段的终浓度为100μM~500μM;Mix the AMC peptide reaction solution with the lysis supernatant and react for 1 hour at 37°C and 200rpm to 300rpm to obtain the first treatment solution. The AMC peptide reaction solution contains the AMC peptide with acyl modification, so The final concentration of the AMC peptide is 100 μM ~ 500 μM;
    向所述第一处理液中加入2×终止液,于25℃~37℃静置反应1h~1.5h,得到第二处理液,所述终止液包括2.0mg/mL~5.0mg/mL trypsin、含有2mM~6mM NAM的2×Tris缓冲液;Add 2× stop solution to the first treatment solution, and let it react at 25°C to 37°C for 1h to 1.5h to obtain the second treatment solution. The stop solution includes 2.0mg/mL to 5.0mg/mL trypsin, 2×Tris buffer containing 2mM~6mM NAM;
    在360nm激发波长、460nm发射波长下检测所述第二处理液的荧光强度,根据所述第二处理液的荧光强度判断所述待测细胞中sirtuin的去酰基化酶活性。The fluorescence intensity of the second treatment solution is detected at an excitation wavelength of 360 nm and an emission wavelength of 460 nm, and the deacylase activity of sirtuin in the cells to be tested is determined based on the fluorescence intensity of the second treatment solution.
  8. 根据权利要求7所述的sirtuin突变体的筛选方法,其特征在于,所述带有酰基修饰的AMC肽段中所述酰基修饰为乙酰基修饰、琥珀酰基修饰、肉豆蔻酰基修饰、壬酰基修饰或者长链脂肪酰基修饰。The screening method for sirtuin mutants according to claim 7, wherein the acyl modification in the AMC peptide with acyl modification is acetyl modification, succinyl modification, myristoyl modification, nonanoyl modification or long chain fatty acyl modification.
  9. 根据权利要求8所述的sirtuin突变体的筛选方法,其特征在于,所述AMC肽段为带BOC保护基团的赖氨酸酰基化修饰且带有AMC标记的肽段。The method for screening sirtuin mutants according to claim 8, wherein the AMC peptide is a lysine acylation-modified peptide with a BOC protection group and AMC label.
  10. 一种sirtuin突变体,其特征在于,由权利要求1-9任一项所述的sirtuin突变体的筛选方法制备得到。A sirtuin mutant, characterized in that it is prepared by the screening method for sirtuin mutants according to any one of claims 1 to 9.
  11. 根据权利要求10所述的sirtuin突变体,其特征在于,由野生型sirtuin的如下位点中的至少一个发生突变得到:第76位的丙氨酸、第91位的苯丙氨酸、第147位的组氨酸、第155位的半胱氨酸、第185位的脯氨酸。The sirtuin mutant according to claim 10, characterized in that it is obtained by mutating at least one of the following sites of wild-type sirtuin: alanine at position 76, phenylalanine at position 91, phenylalanine at position 147 Histidine at position 155, cysteine at position 155, and proline at position 185.
  12. 根据权利要求10所述的sirtuin突变体,其特征在于,第76位的丙氨酸发生如下突变中的一种:A76P、A76V;The sirtuin mutant according to claim 10, characterized in that the alanine at position 76 undergoes one of the following mutations: A76P, A76V;
    第91位的苯丙氨酸发生如下突变中的一种:F91L、F91S;The phenylalanine at position 91 has one of the following mutations: F91L, F91S;
    第147位的组氨酸发生如下突变中的一种:H147L、H147Y;Histidine at position 147 has one of the following mutations: H147L, H147Y;
    第155位的半胱氨酸发生如下突变中的一种:C155R、C155S、C155Y;The cysteine at position 155 has one of the following mutations: C155R, C155S, C155Y;
    第185位的脯氨酸发生如下突变中的一种:P185L、P185T。The proline at position 185 has one of the following mutations: P185L, P185T.
  13. 权利要求10-12任一项所述的sirtuin突变体在去酰基化酶活改变上的应用。Application of the sirtuin mutant described in any one of claims 10 to 12 in changing deacylase activity.
PCT/CN2022/119322 2022-09-16 2022-09-16 Method for high-throughput screening of sirtuin mutant, sirtuin mutant, and use thereof WO2024055291A1 (en)

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Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2006065076A1 (en) * 2004-12-14 2006-06-22 Cj Corporation 5'-xmp aminase mutant
CN103097545A (en) * 2010-07-07 2013-05-08 康奈尔大学 Modulators for Sirt5 and assays for screening same
CN107630011A (en) * 2006-07-05 2018-01-26 催化剂生物科学公司 Protease screening procedure and the protease thus differentiated
WO2018064752A1 (en) * 2016-10-07 2018-04-12 Ranomics Inc. Pcr-based method for generating multisite saturation mutagenic dna libraries
CN108192882A (en) * 2018-01-18 2018-06-22 天津市湖滨盘古基因科学发展有限公司 The histon deacetylase (HDAC) mutain of people a kind of and its application
CN113584016A (en) * 2021-08-17 2021-11-02 安徽金禾实业股份有限公司 Method for improving enzyme activity of glucosyltransferase EUGT11 by error-prone PCR (polymerase chain reaction) technology and high-throughput screening

Patent Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2006065076A1 (en) * 2004-12-14 2006-06-22 Cj Corporation 5'-xmp aminase mutant
CN107630011A (en) * 2006-07-05 2018-01-26 催化剂生物科学公司 Protease screening procedure and the protease thus differentiated
CN103097545A (en) * 2010-07-07 2013-05-08 康奈尔大学 Modulators for Sirt5 and assays for screening same
WO2018064752A1 (en) * 2016-10-07 2018-04-12 Ranomics Inc. Pcr-based method for generating multisite saturation mutagenic dna libraries
CN108192882A (en) * 2018-01-18 2018-06-22 天津市湖滨盘古基因科学发展有限公司 The histon deacetylase (HDAC) mutain of people a kind of and its application
CN113584016A (en) * 2021-08-17 2021-11-02 安徽金禾实业股份有限公司 Method for improving enzyme activity of glucosyltransferase EUGT11 by error-prone PCR (polymerase chain reaction) technology and high-throughput screening

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
SHI XIAO-YAN, DU LI-MIN: "Sirtuin family and its biological functions", JOURNAL OF INTERNATIONAL PHARMACEUTICAL RESEARCH., vol. 38, no. 5, 1 October 2011 (2011-10-01), pages 349 - 355, XP093146001, DOI: 10.13220/j.cnki.jipr.2011.05.004 *

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