WO2023140409A1 - Composition pour le traitement de la dysplasie de la hanche canine à l'aide d'un éditeur primaire - Google Patents

Composition pour le traitement de la dysplasie de la hanche canine à l'aide d'un éditeur primaire Download PDF

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WO2023140409A1
WO2023140409A1 PCT/KR2022/001180 KR2022001180W WO2023140409A1 WO 2023140409 A1 WO2023140409 A1 WO 2023140409A1 KR 2022001180 W KR2022001180 W KR 2022001180W WO 2023140409 A1 WO2023140409 A1 WO 2023140409A1
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recombinant vector
hip dysplasia
gene
dogs
seq
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PCT/KR2022/001180
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English (en)
Korean (ko)
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김민규
박강선
김동언
지국빈
이지혜
김은영
박연배
길태영
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주식회사 엠케이바이오텍
충남대학교산학협력단
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Publication of WO2023140409A1 publication Critical patent/WO2023140409A1/fr

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P19/00Drugs for skeletal disorders
    • A61P19/02Drugs for skeletal disorders for joint disorders, e.g. arthritis, arthrosis
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/11DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
    • C12N15/113Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/87Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
    • C12N15/90Stable introduction of foreign DNA into chromosome
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/12Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • C12N9/22Ribonucleases RNAses, DNAses

Definitions

  • the present invention relates to a method for treating canine hip dysplasia using prime editing technology, and uses a recombinant vector containing a guide RNA, a primer binding site, and a reverse transcriptase polymerase template gene to correct a gene involved in canine hip dysplasia efficiently and with high accuracy compared to the existing CRISPR/Cas9 system.
  • Hip dysplasia has very similar clinical manifestations and pathogenesis in both humans and dogs.
  • Hip dysplasia is a musculoskeletal disease caused by an incomplete connection between the femoral head and the acetabulum. It is accompanied by severe pain and is a common disease in medium-large dogs such as retrievers. It is known that individuals with hip dysplasia cause osteoarthritis, lameness, reduced mobility, and the like. The causes of hip dysplasia include both genetic and environmental influences. To reduce the prevalence of genetically induced hip dysplasia, breeding strategies can be used according to well-established selection plans, and these strategies have been used to produce healthy individuals in all species. However, research on treating the disease by directly regulating the gene that causes hip dysplasia in dogs has not yet been attempted.
  • Prime editing has been developed and validated in mice and plants. Unlike the method using CRISPR/Cas9-HDR (homology-directed repair), prime editing does not induce double-strand breaks and does not require oligo DNA.
  • Prime editing is designed to generate nickase in double strands using CRISPR/Cas9 (H840A) and edit DNA at the nickase-generating site using reverse transcriptase (Moloney murine leukemia virus: M-MLV).
  • M-MLV reverse transcriptase
  • Prime editing allows low off-target efficiency and precise transitions, insertions, and removals. Because of this low off-target efficiency, prime editing has great potential for correcting pathogenic alleles.
  • Prime editing was originally developed in human cells, but has recently been used to develop plant strains, and mice and fruit flies have been used as human disease models.
  • One aspect provides a recombinant vector comprising a guide RNA represented by SEQ ID NO: 1, a primer binding site represented by SEQ ID NO: 3, and a reverse transcription polymerase template represented by SEQ ID NO: 4.
  • Another aspect provides a composition for treating or preventing canine hip dysplasia comprising the recombinant vector.
  • Another aspect provides a method for treating or preventing hip dysplasia in dogs, comprising introducing the recombinant vector into a subject.
  • One aspect provides a recombinant vector comprising a guide RNA represented by SEQ ID NO: 1, a primer binding site represented by SEQ ID NO: 3, and a reverse transcription polymerase template represented by SEQ ID NO: 4.
  • the recombinant vector is for treating or preventing canine hip dysplasia, and may be for targeting a gene involved in canine hip dysplasia.
  • the recombinant vector may be defined as a gene cassette or may be a genome editing vector.
  • the recombinant vector of the present invention includes not only gRNA, but also a scaffold RT template and a primer binding site, so that each component is operably linked so as to form a set. Therefore, targeting with gRNA can be the same as the previous Cas9, but overall it can perform more stable and accurate gene editing function compared to conventional CRISPR/Cas9.
  • the term "vector” refers to a genetic construct comprising a nucleotide sequence of a gene operably linked to a suitable regulatory sequence so as to express a gene of interest in a suitable host, and the regulatory sequence may include a promoter capable of initiating transcription, an arbitrary operator sequence for regulating such transcription, and a sequence regulating the termination of transcription and translation.
  • the term "recombinant vector" when the coding gene of the target polypeptide to be expressed is operably linked, can be used as an expression vector of the target polypeptide capable of expressing the target polypeptide with high efficiency in an appropriate host cell, and the recombinant vector can be expressed in the host cell.
  • the host cell may preferably be a eukaryotic cell, and depending on the type of host cell, expression control sequences such as promoters, terminators, enhancers, etc., sequences for membrane targeting or secretion, etc. may be appropriately selected and combined in various ways depending on the purpose.
  • the vector may be an expression vector or a genome editing vector, and may be, for example, a non-viral vector or a viral vector.
  • the non-viral vector is preferably plasmid DNA
  • the viral vector may be a lentivirus, retrovirus, adenovirus, herpes virus or avipox virus vector, but is not limited thereto.
  • the expression vector preferably further includes a gene encoding a selectable marker such as a fluorescent protein to facilitate selection of transformed cells.
  • markers conferring selectable phenotypes such as drug resistance, auxotrophy, resistance to cytotoxic agents or expression of surface proteins, for example, fluorescent proteins, puromycin, neomycin, hygromycin, histidinol dehydrogenase (hisD) and guanine phosphoribosyltransferase (Gpt).
  • the fluorescent protein may be, for example, green fluorescent protein (GFP), yellow fluorescent protein (YFP), red fluorescent protein (RFP), orange fluorescent protein (OFP), cyan fluorescent protein (CFP), blue fluorescent protein (BFP), or far-red fluorescent protein, but is not limited thereto.
  • the recombinant vector may further include a PAM gene represented by the polynucleotide sequence of SEQ ID NO: 2.
  • the PAM gene may be specifically located between the guide RNA and the primer binding site.
  • the guide RNA, PAM gene, primer binding site, and reverse transcription polymerase template are operably linked.
  • guide RNA, PAM gene, primer binding site, and reverse transcription polymerase template may be defined as prime editor RNA, and the recombinant vector may further include components of CRISPR/Cas9 and RNA polymerase to serve as genetic scissors.
  • Cas9 protein and RNA polymerase can be commonly known.
  • the virus may be a lentivirus, a retrovirus, an adenovirus, a herpes virus, or an avipox virus, but is not limited thereto.
  • Another aspect provides a composition for treating hip dysplasia comprising the recombinant vector.
  • Another aspect provides a composition for breeding management of dogs comprising the recombinant vector.
  • the breeding management of the dog may mean obtaining a second-generation individual whose hip dysplasia is corrected from an individual who is likely to have hip dysplasia or has hip dysplasia.
  • prevention means reversing, alleviating, or inhibiting, delaying, or preventing the symptoms of hip dysplasia, and the “treatment” may refer to the act of treating in the sense of "treatment method”.
  • the term "pharmaceutically acceptable carrier” refers to a carrier or diluent that does not stimulate organisms and does not inhibit the biological activity and properties of the administered compound.
  • acceptable pharmaceutical carriers are sterile and biocompatible, and saline, sterile water, Ringer's solution, buffered saline, albumin injection solution, dextrose solution, maltodextrin solution, glycerol, ethanol, and one or more of these components may be mixed and used, and other conventional additives such as antioxidants, buffers, and bacteriostatic agents may be added as necessary.
  • diluents such as aqueous solutions, suspensions, and emulsions, pills, capsules, granules, or tablets.
  • Another aspect provides a method of treating canine hip dysplasia comprising introducing the recombinant vector into the subject.
  • Another aspect provides a dog breeding management method comprising introducing the recombinant vector into an individual.
  • the breeding management method may be for correcting a hip dysplasia inducing gene in a dog determined to have hip dysplasia.
  • the subject may be a dog (Canis lupus familiaris).
  • the dogs may be more specifically Labrador retrievers.
  • the expression vector containing the recombinant vector may be introduced into cells together with delivery reagents including G-fectin, Mirus TrasIT-TKO lipophilic reagent, lipofectin, lipofectamine, cellfectin, cationic phospholipid nanoparticles, cationic polymers, cationic micelles, cationic emulsions or liposomes, or by conjugating biocompatible polymers such as polyethylene glycol to increase intracellular uptake, using a virus
  • delivery reagents including G-fectin, Mirus TrasIT-TKO lipophilic reagent, lipofectin, lipofectamine, cellfectin, cationic phospholipid nanoparticles, cationic polymers, cationic micelles, cationic emulsions or liposomes, or by conjugating biocompatible polymers such as polyethylene glycol to increase intracellular uptake, using a virus
  • delivery reagents including G-fectin, Mirus TrasIT-TKO lipophilic reagent, lip
  • the step of injecting the recombinant vector into the organism may be more specifically, a method of introducing the recombinant vector into somatic cells to obtain knocked-in somatic cells, and then obtaining cloned embryos of somatic cells; a method of directly injecting a recombinant vector into a fertilized egg; A method of making fertilized eggs through nuclear transfer in which a recombinant vector is injected into somatic cells of the subject and the nucleus of the somatic cells into which the recombinant vector is injected is injected into an egg, but is not limited thereto.
  • the genetic construct of the present invention canine hip dysplasia can be effectively and successfully treated.
  • the genetic construct of the present invention is applied with prime editing technology, and has the advantage of being simple and highly efficient compared to CRISPR/Cas9-HDR without the need for cell division or introduction of oligo DNA.
  • Figure 1 shows the genetic construct of the virus for the treatment of hip dysplasia.
  • peg RNA contains CRISPR/Cas9 guide RNA, RNA polymerase RT template, and RNA binding site.
  • Figure 2 shows the genetic structure of peg RNA in detail.
  • [AGG] is the PAM sequence
  • the left side of the PAM sequence is the gRNA
  • the right side is the RT template and primer binding site
  • the red base is the mutation site.
  • Figure 3 shows the results of analyzing the nucleotide sequence of cells corrected using the genetic construct of the present invention.
  • Figure 4 shows the results of analyzing the nucleotide sequence of cells corrected using the genetic construct of the present invention.
  • Figure 5 confirms the image and GFP expression of an individual delivered after correcting using the genetic construct of the present invention.
  • FIG. 7 is a sequencing result showing that SNPs causing hip dysplasia were corrected in the genomic DNA of an individual delivered after correction using the genetic construct of the present invention.
  • FIG. 8 is an X-ray image of a hip joint of a cell donor dog and a cloned dog. Specifically, FIG. 8A is the hip joint of an 18-month-old cell donor dog, FIG. 8B is the hip joint of a 38-month-old cell donor dog, FIG. 8C is the hip joint of cloned dog #1 at 11 months, and FIG. 8D is an X-ray image of the hip joint of cloned dog #2 at 11 months.
  • the present invention relates to a recombinant vector comprising a guide RNA represented by SEQ ID NO: 1, a primer binding site represented by SEQ ID NO: 3, and a reverse transcription polymerase template represented by SEQ ID NO: 4.
  • the guide RNA for prime editing and the vector construct containing it were designed as follows.
  • SNPs single nucleotide polymorphisms
  • the SNP selected as a target has the feature of point mutation of T to C at the BISF2S23030416 locus.
  • the pegRNA used for Lyme editing was designed to start with a 13 nt primer binding site and a 14 nt RT template (Bioneer, Inc) (Fig. 2).
  • a lentivirus-derived vector was used (addgene #135955), and it was designed to include CRISPR/Cas9, RNA polymerase, and pegRNA, and include a GFP gene to confirm the insertion with fluorescence (FIG. 1).
  • a virus containing the gene cassette as described above was prepared by a company (Lugen SCI, Inc).
  • Fibroblasts were obtained from the ear of an 18-month-old dog suffering from hip dysplasia to confirm hip dysplasia correction in a cell line. Then, the cells were cultured in a culture medium containing DMEM-Glutamax, 15% FBS and 1% penicillin/streptomycin. After infecting the cultured fibroblasts by treating the virus at 100 MOI in a 12-well plate, the presence or absence of infection was confirmed by GFP and sequencing analysis. As a result, it was confirmed that the prime editing was working as the cell lines treated with the virus showed a heterogeneous type with C and T, whereas the cells without treatment had the C sequence (Figs. 3 and 4).
  • somatic cell nuclear transfer SCNT
  • embryo transfer methods were used.
  • a Labrador retriever was selected as a dog breed, matured oocytes of an individual with hip dysplasia having first polarity were obtained, metaphase chromosomes were removed, and the somatic cells of Example 2 were transferred to the perivitelline space of the extracted oocytes. Then, each donor cell-cytoplasmic bond was fused with two direct current pulses (24-26V for 15 ⁇ sec) in an electro-cell fusion device. The fused SCNT embryos were cultured in 10 ⁇ M calcium ion channel (Sigma) to induce chemical activation, washed and then incubated in synthetic oviduct fluid medium (mSOF) containing 1.9 mM 6-dimethylaminopurine (6-DMAP).
  • mSOF synthetic oviduct fluid medium
  • a cell donor dog (dog name: Miwoo) with hip dysplasia disease was diagnosed with hip dysplasia at 18 months, and an individual that maintained the findings of hip dysplasia even after 38 months was used.
  • X-rays were taken at 11 months of age for two cloned dogs produced through gene editing technology and somatic cell nuclear transfer technology in the same manner as in Test Example 1 above.
  • FIG. 8 The results are shown in FIG. 8 .
  • Figure 8A shows the hip joint of an 18-month-old cell donor dog
  • Figure 8B shows the hip joint of a 38-month-old cell donor dog.
  • Fig. 8C shows the hip joint of cloned dog #1 at 11 months old
  • Fig. 8D shows the hip joint of cloned dog #2 at 11 months old.
  • the present invention relates to a method for treating canine hip dysplasia using prime editing technology, and uses a recombinant vector containing a guide RNA, a primer binding site, and a reverse transcriptase polymerase template gene to correct a gene involved in canine hip dysplasia efficiently and with high accuracy compared to the existing CRISPR/Cas9 system.

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Abstract

La présente invention concerne un procédé de traitement de la dysplasie de la hanche canine utilisant une technique d'édition primaire. En utilisant le vecteur recombiné de la présente invention, les gènes associés à la dysplasie de la hanche canine peuvent être comparés à un système CRISPR/Cas9 existant pour effectuer des corrections très précises et efficaces, et la présente invention peut donc être utilisée pour traiter la dysplasie de la hanche canine ou pour gérer l'élevage des canidés.
PCT/KR2022/001180 2022-01-20 2022-01-24 Composition pour le traitement de la dysplasie de la hanche canine à l'aide d'un éditeur primaire WO2023140409A1 (fr)

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Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR20120043793A (ko) * 2010-10-27 2012-05-07 대한민국(농촌진흥청장) 개 고관절 이형성증 조기 진단용 snp 및 이의 용도
KR102124770B1 (ko) * 2018-12-12 2020-06-19 대한민국 개의 고관절탈구 조기 예측 또는 진단용 조성물

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR20120043793A (ko) * 2010-10-27 2012-05-07 대한민국(농촌진흥청장) 개 고관절 이형성증 조기 진단용 snp 및 이의 용도
KR102124770B1 (ko) * 2018-12-12 2020-06-19 대한민국 개의 고관절탈구 조기 예측 또는 진단용 조성물

Non-Patent Citations (4)

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Title
CHOI BONG-HWAN, SEULGI KWON , JAE-GYU YOO , SEUNG HWAN LEE: "Genome-wide Association Study using the Canine SNP20 Beadchip for Canine Hip Dysplasia in Labrador Retriever", JOURNAL OF ANIMAL BREEDING AND GENOMICS, vol. 3, no. 1, 1 March 2019 (2019-03-01), pages 7 - 15, XP093079326, ISSN: 1226-5543, DOI: 10.12972/jabng.20190002 *
KIM, LEE-KYUNG: "Development of single nucleotide polymorphism (SNP) markers for the diagnosis of hip dysplasia in Labrador retriever", THESIS, 1 August 2013 (2013-08-01), KR, pages 1 - 33, XP009547755 *
MIKKOLA LEA, HOLOPAINEN SAILA, PESSA-MORIKAWA TIINA, LAPPALAINEN ANU K., HYTÖNEN MARJO K., LOHI HANNES, IIVANAINEN ANTTI: "Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci", BMC GENOMICS, vol. 20, no. 1, 1 December 2019 (2019-12-01), pages 1 - 13, XP093079329, DOI: 10.1186/s12864-019-6422-6 *
YAN JUN; CIRINCIONE ANN; ADAMSON BRITT: "Prime Editing: Precision Genome Editing by Reverse Transcription", MOLECULAR CELL, vol. 77, no. 2, 16 January 2020 (2020-01-16), AMSTERDAM, NL, pages 210 - 212, XP086007503, ISSN: 1097-2765, DOI: 10.1016/j.molcel.2019.12.016 *

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