WO2022148078A1 - Method for gene editing fertilized animal egg by means of electrotransfection and use thereof - Google Patents

Method for gene editing fertilized animal egg by means of electrotransfection and use thereof Download PDF

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WO2022148078A1
WO2022148078A1 PCT/CN2021/122721 CN2021122721W WO2022148078A1 WO 2022148078 A1 WO2022148078 A1 WO 2022148078A1 CN 2021122721 W CN2021122721 W CN 2021122721W WO 2022148078 A1 WO2022148078 A1 WO 2022148078A1
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sgrna
animal
fertilized egg
fertilized
mutant
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李寅青
朱明�
袁俊松
臧璐
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清华大学
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    • C12N15/113Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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    • AHUMAN NECESSITIES
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    • A01K2227/105Murine
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
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    • C12N2310/10Type of nucleic acid
    • C12N2310/20Type of nucleic acid involving clustered regularly interspaced short palindromic repeats [CRISPRs]

Definitions

  • the present invention relates to the field of biotechnology, in particular, the present invention relates to a method and application of electrotransfection gene editing for animal fertilized eggs, and more specifically, the present invention relates to a method and construction for electrotransfection gene editing of animal fertilized eggs
  • a method for mutating a fertilized egg cell a method for constructing a homozygous HDR fertilized egg cell, a method for constructing a lethal gene single deletion fertilized egg cell, a method for constructing a mutant animal, and a method for weakening the zona pellucida of the animal zygote.
  • mice are of great significance in biological research. According to the 1.8 million experimental procedures reported in the 2018 UK Live Animal Science Procedures Annual Statistics, 60% of the procedures used mice as experimental animals; 1.72 million were created and bred Among the experimental procedures of genetically engineered animals, 87% of the procedures are for breeding genetically engineered mice. According to reports, China's demand for animal models to simulate human diseases has surged, and the market demand for genetically engineered mice is growing rapidly, and the market demand will exceed 1.59 billion US dollars in 2022.
  • mice There is a huge demand for genetically engineered mice, but the current mainstream technology for gene editing of mouse embryos is microinjection technology, which has low throughput, low efficiency and high cost. At the same time, the construction of multi-gene knockout mouse models has high cost, long cycle and low success rate, which severely limits the application of mouse models.
  • Embryonic gene editing technology based on electrotransfection has just appeared in recent years and is still in the research and exploration stage. Therefore, the existing embryonic gene editing technology based on electrotransfection still needs to be improved.
  • an object of the present invention is to provide a means capable of effectively electrotransfecting a gene editing system into animal embryos and realizing efficient homologous recombination.
  • the inventor found that the efficiency of the existing fertilized egg cell gene editing technology is unstable, and it is usually only tested on one or two single genes, and there is no stable realization of high-efficiency single genes at different gene loci. Editing, there is no efficient acquisition of homozygous mutant fertilized egg cells, and multi-gene editing cannot be achieved, which largely limits the application of the corresponding scarce mouse model.
  • the inventors of the present invention unexpectedly found that during electrotransfection of mouse embryos, the time point at which exogenous genes used for gene editing are introduced into mouse embryos is very important for the final electrotransfection efficiency, thus completing the
  • the present invention proposes a method that can efficiently realize electrotransfection of foreign substances into fertilized egg cells, and further can stably achieve high-efficiency gene editing at different gene loci, and efficiently obtain recombinant fertilized egg cells, which is very important. To a large extent, the application of the corresponding scarce mouse model is promoted.
  • the present invention proposes an efficient and stable electrotransfection gene editing system for animal fertilized egg cells (sometimes also referred to as "embryo" in this document).
  • Gene editing knockout efficiency increase the proportion of heterozygous HDR embryos, increase the proportion of homozygous HDR embryos, and realize multi-gene editing, thereby reducing the breeding cost of genetically engineered mice and laying a good foundation for efficient breeding of genetically engineered mice.
  • the present invention provides a method for electrotransfection gene editing of animal fertilized eggs.
  • the method includes: (1) performing a zona weakening treatment on the animal fertilized eggs before the S phase; (2) mixing exogenous substances with the zona pellucida weakened animal fertilized eggs, and performing Electroporation transfection treatment, wherein the foreign substances include Cas9 protein and sgRNA.
  • the inventors have unexpectedly discovered through a large number of experiments that when animal fertilized eggs undergo electrotransfection gene editing, the weakening of the zona pellucida of animal fertilized eggs and the cell cycle stage they are in have an impact on the efficiency of electrotransfection gene editing It is very important, wherein, the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with the benchtop solution for 4 to 10 seconds, and performing electrotransfection in the form of a mixture of Cas9 protein and sgRNA, which can effectively improve the efficiency of gene editing. efficiency.
  • the inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection.
  • the efficiency and the efficiency of obtaining homozygous HDR mutants are crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, and if the time is too long, the weakening of the zona pellucida will be too high, which will affect the Embryo survival.
  • electroporation transfection and “electrotransfection” can be used interchangeably herein
  • electroporation transfection can effectively improve the transfection efficiency and maintain The viability of embryos, especially the high-efficiency gene editing of multiple genes.
  • electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
  • the present invention provides a method for constructing mutant fertilized egg cells.
  • the method includes: (1) performing a zona weakening treatment on the animal fertilized eggs before the S phase; (2) mixing exogenous substances with the zona pellucida weakened animal fertilized eggs, and performing Electroporation transfection treatment, wherein the exogenous substance includes Cas9 protein and at least one sgRNA, and the weight ratio of the Cas9 protein to the at least one sgRNA is 2-6:1 based on weight.
  • the fertilized egg cells of animals before S phase are used, and electrotransfection is carried out in the form of a mixture of Cas9 protein and sgRNA, the efficiency of gene editing can be effectively improved, so that the construction can be further improved. Efficiency of mutant fertilized egg cells.
  • the present invention provides a method for constructing a mutant fertilized egg cell, the mutant fertilized egg cell is a homozygous HDR fertilized egg cell, according to an embodiment of the present invention, the method includes: (1) The fertilized eggs of animals before the S phase are treated with weakened zona pellucida; (2) after mixing the exogenous material with the fertilized eggs of animals with weakened zona pellucida, electroporation is performed to obtain transfected fertilized egg cells, wherein , the exogenous material includes Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, based on the weight, the weight ratio of the Cas9 protein to the at least one sgRNA is 2 to 6: 1; and (3) selecting the homozygous HDR zygote from the transfected zygote.
  • the proportion of homozygous HDR fertilized eggs can reach 20%.
  • the efficiency of gene editing can be effectively improved, so that the construction can be further improved.
  • Efficiency of mutant fertilized egg cells It was also unexpectedly found that the proportion of homozygous HDR fertilized egg cells could reach 20%.
  • the present invention provides a method for constructing a mutant fertilized egg cell, wherein the mutant fertilized egg cell is a lethal gene single deletion fertilized egg cell.
  • the method includes (1) weakening the zona pellucida on the fertilized eggs of animals before the S phase; (2) mixing the exogenous material with the fertilized eggs of animals subjected to the weakening zona pellucida treatment, and then performing Electroporation transfection treatment to obtain transfected fertilized egg cells, wherein the exogenous material comprises Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, on a weight basis, the Cas9 The weight ratio of protein to the at least one sgRNA is 2-6:1; and (3) selecting the lethal gene single-deletion fertilized egg cells from the transfected fertilized egg cells, wherein the at least one sgRNA and the ssODN was determined based on lethal genes
  • the efficiency of constructing mutant fertilized egg cells can be improved when the fertilized egg cells of animals before S phase are used, and electrotransfection is performed in the form of a mixture of Cas9 protein and sgRNA.
  • the proportion of lethal genes with single deletions was as high as 54%, so that fertilized egg cells with single deletion lethal genes could be effectively obtained, Furthermore, the biological activity of the lethal gene can be studied in the state where the fertilized egg cell is alive.
  • the present invention provides a method for constructing a mutant animal, according to an embodiment of the present invention, the method comprises: (a) constructing a mutant fertilized egg cell according to the aforementioned method; and (b) The mutant fertilized egg cells are grown to obtain the mutant animal.
  • the present invention proposes a method for constructing an animal model.
  • the method includes: (i) based on a predetermined disease type, determining sgRNAs associated with disease-related genes and optionally ssODN; (ii) using the sgRNA and Cas9 protein to construct an animal model according to the method described above.
  • corresponding mutant animals can be constructed for known disease-related genes, so as to be used as animal models for disease research or drug screening.
  • the present invention proposes the use of the mutant animals or animal models constructed according to the aforementioned methods in screening drugs.
  • the present invention proposes a method for weakening the zona pellucida for animal fertilized eggs.
  • the method includes: weakening the zona pellucida for the animal fertilized eggs before S phase Treatment, the zona pellucida weakening treatment is carried out by contacting the fertilized egg cells of the animal with the table solution for 4-10 seconds.
  • the inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection.
  • the efficiency and the efficiency of obtaining homozygous HDR mutants are crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, and if the time is too long, the weakening of the zona pellucida will be too high, which will affect the Embryo survival.
  • electroporation transfection and “electrotransfection” can be used interchangeably herein
  • electroporation transfection can effectively improve the transfection efficiency and maintain the transfection efficiency.
  • the electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
  • Figure 1 shows the results of next-generation sequencing after gene editing by electrotransfection of the mouse embryo Emx1 gene designed according to an embodiment of the present invention. Where there are sets of peaks, it indicates the existence of different genome sequences, indicating that gene editing has occurred.
  • Fig. 2 shows the results of first-generation sequencing of homozygous HDR mutants according to an embodiment of the present invention, wherein, in the region shown by the red rectangle, all bases are changed to the same mutation as ssODN, and no spurious peaks appear, and the edited target base Because of Emx1, the guide sequence of sgRNA is GAGTCTGAGCAGAAGAAGAA, and the corresponding ssODN sequence is GAGTCCGAGCAGAAGAAAAA. The total length of ssODN is 130nt, and the rest of the base sequence is the same as that of the mouse genome.
  • fertilization egg or "fertilized egg cell” as used in the text refers to a zygotic cell that does not divide after the sperm and egg are fertilized and the chromosomes of the egg pronucleus and sperm pronucleus are fused together, in this context due to the collection of fertilization Egg cells are collected in the same way as embryos are collected, so fertilized egg cells at this stage are sometimes called "embryos”.
  • electrotransfection is the transient increase in the permeability of the cell membrane through the action of a high-intensity electric field, thereby absorbing foreign molecules in the surrounding medium.
  • exogenous substances are introduced into the fertilized egg cells by this technology.
  • the main exogenous substances include Cas9 protein and sgRNA, and ssODN can also be added according to the situation.
  • Cas9 protein plays the role of molecular scissors
  • sgRNA also known as small guide RNA (sgRNA)
  • sgRNA small guide RNA
  • Single-stranded oligodeoxyribonucleotide as a template for homologous recombination repair can promote homologous recombination repair to achieve gene sequence replacement.
  • ssODN Single-stranded oligodeoxyribonucleotide
  • nuclease Cas9 as “molecular scissors” is used to generate site-specific double-strand breaks (DSBs) at specific positions in the genome, and further induce the organism to pass non- Homologous end joining (NHEJ) or homologous recombination (HR) (also known as “HDR” (Homology directed repair, homology-mediated double-stranded DNA repair)) to repair DSBs to achieve specific modifications, wherein, in order to Improving the efficiency of homologous recombination-mediated double-stranded DNA repair (HDR) adds additional single-stranded oligodeoxyribonucleotides (ssODN) designed based
  • lethal gene refers to a gene that causes cell death when both alleles are mutated or knocked out in diploid cells.
  • a “lethal gene” that can be used includes, but is not limited to, at least one of Pkd1, FoxG1, Chd2, Virma, c-myc, p38 ⁇ and dUTPase. It should be noted that during gene editing of cells, if both alleles of the diploid cell-killing gene are knocked out or mutated, it is very likely to cause cell death.
  • the term "zona pellucida attenuating treatment” refers to the removal of at least a portion of the zona pellucida compared to untreated embryos (or fertilized egg cells).
  • the zona pellucida is the glycoprotein layer around the plasma membrane of the oocyte, which may form a barrier and prevent the CRISPR/Cas9 components from entering the fertilized egg through electroporation, thereby affecting the efficiency of subsequent gene editing. Excessive treatment of the zona pellucida may affect the survival of fertilized egg cells.
  • the benchtop liquid that can be used can be used for zona weakening treatment.
  • S phase and G1 phase refer to the position of the fertilized egg cell in the cell cycle.
  • the cell cycle refers to the whole process that a cell undergoes from the completion of one division to the end of the next division, and is divided into two phases: interphase and division phase (M phase).
  • interphase is divided into three phases, namely the early DNA synthesis phase (G1 phase), the DNA synthesis phase (S phase) and the late DNA synthesis phase (G2 phase).
  • G1 phase is a period from mitosis to DNA replication, also known as the pre-synthesis period, which mainly synthesizes RNA and ribosomes.
  • the S phase is the DNA synthesis phase. During this phase, in addition to DNA synthesis, histones are also synthesized. The enzymes required for DNA replication are synthesized during this period.
  • the G2 phase is the late stage of DNA synthesis and is the preparation period for mitosis. During this period, DNA synthesis is terminated, and a large amount of RNA and proteins are synthesized, including tubulin and maturation-promoting factors.
  • before S phase means that the fertilized egg cell is in S phase or G1 phase or even G0 phase (ie, the period in which division is stopped, which is rare for fertilized egg cells), wherein G1 phase is preferred.
  • G0 phase the period in which division is stopped, which is rare for fertilized egg cells
  • Those skilled in the art can distinguish the cycle stage in which the fertilized egg cells are by conventional means, such as observing morphological changes under a microscope or staining.
  • Tyrode's solution belongs to a kind of balanced salt solution, mainly composed of sodium chloride, phosphate, calcium chloride, glucose, etc., without HEPES.
  • 1000ml benchtop solution contains NaCl 8.0g, 10% KCl 2.0ml (0.2g), 10% MgSO 4 .7H 2 O 2.6ml (0.26g), 5% NaH 2 PO 4 .2H 2 O 1.3ml (0.065g), NaHCO3 1.0g, 1M CaCl2 1.8ml (0.2g) and glucose 1.0g.
  • the term “amount” refers to weight units unless otherwise specified.
  • mutated fertilized egg cell means that the genome of the fertilized egg cell has at least one variation compared to the genome of the unmutated fertilized egg cell (or the wild-type genome), the variation being one or more bases
  • mutant cells are also called “recombinant cells” and are used interchangeably.
  • homozygous means that for diploidy, two homologous chromosomes have the same allele or mutation, eg, for a pair of homologous chromosomes, gene A is knocked out on one chromosome and the other chromosome Gene A is also knocked out, and the cell is "homozygous" for the gene A mutation.
  • homozygous HDR refers to the occurrence of "HDR” (Homology directed repair, homology-mediated double-stranded DNA repair) at a specific location on a pair of homologous chromosomes.
  • HDR Homology directed repair, homology-mediated double-stranded DNA repair
  • the same functional change occurs in the gene corresponding to the specific position, such as up-regulation, down-regulation, amino acid mutation or functional loss.
  • single deletion refers to a specific gene for a pair of homologous chromosomes, the function of which is changed on one chromosome, such as loss of function or decreased expression compared to wild type, and the other chromosome The function of the gene did not change.
  • lethal genes if both alleles of the diploid cell lethal gene are knocked out or mutated, it is very likely to cause cell death. Therefore, when conducting functional studies, single knockout is required. Deletion, that is, knocking out the lethal gene on an allele, thus ensures that after the lethal gene is gene-edited, the resulting recombinant cells, especially fertilized egg cells, can still survive.
  • the inventors found that the existing homology-directed repair (HDR) fertilized egg cells obtained by gene editing are relatively inefficient or the gene editing efficiency is unstable. Usually, only one or two single genes have been tested. High-efficiency single-gene editing is stably achieved at different gene loci, and homozygous mutant zygotes are not efficiently obtained, which largely limits the application of corresponding scarce mouse models.
  • the inventor of the present invention unexpectedly found that the processing timing of the exogenous gene used for gene editing in the electrotransfection of mouse embryos is very important for the final electrotransfection efficiency, thus completing the present invention.
  • the method that can efficiently realize electrotransfection of foreign substances into fertilized egg cells can further realize high-efficiency gene editing at different gene loci, and efficiently obtain recombinant fertilized egg cells, which greatly promotes the corresponding Applications of scarce mouse models.
  • the present invention proposes an efficient and stable electrotransfection gene editing system for animal fertilized egg cells (sometimes also referred to as "embryo" in this document).
  • Gene editing efficiency increase the proportion of recombinant fertilized egg cells, and realize multi-gene editing, thereby reducing the cost of breeding genetically engineered mice and laying a good foundation for the efficient breeding of genetically engineered mice.
  • the present invention provides a method for electrotransfection gene editing of animal fertilized eggs. According to an embodiment of the present invention, the method includes:
  • the zona pellucida was weakened on the fertilized eggs of animals before the S phase.
  • the inventors of the present invention found that in the process of introducing foreign substances by electrotransfection, the presence of the zona pellucida in animal fertilized egg cells would prevent the foreign substances from entering the fertilized egg cells. Therefore, it is necessary to weaken the zona pellucida to facilitate the entry of foreign substances into fertilized egg cells.
  • the zona pellucida weakening treatment is performed.
  • the treatment time of this step is as long as the efficiency of subsequent electrotransfection is up to Crucially, if the contact time is too short, the weakening of the zona pellucida will be insufficient, reducing the efficiency of gene editing. If the contact time is too long, the weakening of the zona pellucida will be too high, which will affect the survival of the embryo.
  • the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with the table solution for 0-40 seconds.
  • the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with the bench top liquid for 5 seconds. Therefore, it can be ensured that while the electrotransfection efficiency is improved, the viability of embryos or fertilized egg cells after electrotransfection is not affected.
  • the animal is a mammal.
  • the animals include rodents, dogs, cats, rabbits, and monkeys.
  • the animals include mice and rats.
  • the fertilized egg of the animal is in the G1 phase.
  • the electroporation transfection process is completed within 10 hours after fertilization.
  • the animals are rodents, and optionally, the rodents include mice and rats.
  • the fertilized egg cell of the animal is before S phase.
  • the inventor unexpectedly discovered through a large number of experiments that the time for electrotransfection treatment is very important. Effectively improve the efficiency of obtaining gene mutations, especially the efficiency of homozygous mutations of multiple genes.
  • the transfection process can be started before 10 o'clock the next day in the hermaphroditic cage, so that the electrotransfection process can be completed before 10 o'clock, for example, before 9 o'clock, before 8 o'clock, before 7 o'clock , before 6 o'clock, etc., which, preferably, is carried out between 9 o'clock and 9:30.
  • the inventor believes that the possible reason is that it takes 10 hours for the mouse embryo to enter the S phase from fertilization.
  • mice The actual time of mating and fertilization of mice can be defaulted, but it is generally considered that the mating time of mice is at 12:00 midnight. Therefore, the inventor believes that it is necessary to complete the process from embryo collection to electrotransfection before 10:00 a.m. the next day after the cage is closed. a series of operations. It should be noted that, according to the embodiment of the present invention, when using other means, such as injection method, the operation efficiency is usually low, and for more than 100 mouse embryos, it will be difficult to complete the entire transfection operation before 10 o’clock, and due to The duration of the operation is long, so it is difficult to ensure the uniformity and synchronization of the transfection process.
  • the present invention also proposes a method for weakening the zona pellucida of an animal fertilized egg.
  • the method includes: weakening the zona pellucida on an animal fertilized egg before the S phase Treatment, the zona pellucida weakening treatment is carried out by contacting the fertilized egg cells of the animal with the table solution for 4-10 seconds.
  • the inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection. Efficiency is crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, reducing the efficiency of gene editing. If the contact time is too long, the weakening of the zona pellucida will be too high, which will affect the survival of the embryo.
  • electroporation transfection and “electrotransfection” can be used interchangeably herein
  • electroporation transfection can effectively improve the transfection efficiency and maintain The viability of embryos, especially the high-efficiency gene editing of multiple genes.
  • electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
  • FIG. 1 shows the results of next-generation sequencing after gene editing by electrical transfection of the designed mouse embryo Emx1 gene. Where there are sets of peaks, it indicates that there are different genome sequences, indicating that gene editing has occurred.
  • the sequencing results are shown in Figure 2: in the area shown by the red rectangle, all the bases have changed to the same mutation as ssODN, and no spurious peaks appear.
  • Fig. 1 shows the results of next-generation sequencing after gene editing by electrical transfection of the designed mouse embryo Emx1 gene. Where there are sets of peaks, it indicates that there are different genome sequences, indicating that gene editing has occurred.
  • the sequencing results are shown in Figure 2: in the area shown by the red rectangle, all the bases have changed to the same mutation as ssODN, and no spurious peaks appear.
  • FIG. 2 shows the results of first-generation sequencing of homozygous HDR mutants according to an embodiment of the present invention, wherein, in the region shown by the gray rectangle, all bases are changed to the same mutation as ssODN, and no spurious peaks appear, and the edited target base Because of Emx1, the guide sequence of sgRNA is GAGTCTGAGCAGAAGAAGAA, and the corresponding ssODN sequence is GAGTCCGAGCAGAAGAAAAA. The total length of ssODN is 130nt, and the rest of the base sequence is the same as that of the mouse genome.
  • controlling the electrotransfection time is very important to increase the proportion of homozygous HDR mutants: if electrotransfection is completed before 10 o'clock, homozygous HDR mutants can be obtained, and the proportion of homozygous HDR mutants is relatively large. ; The electrotransfection experiment was started after 10 o'clock in the morning, and homozygous HDR mutants could hardly be obtained.
  • the HDR ratios of the three genes are as follows. The results showed that the HDR ratio of Zswim3 gene was 23%, the HDR ratio of Tyr gene was 16%, and the HDR ratio of Foxg1 gene was 30.8%, which was significantly higher than the 5% in published articles.
  • the operation efficiency is usually low, and for more than 100 mouse embryos, it will be difficult to complete the entire transfection operation before 10 o’clock, and due to The duration of the operation is long, so it is difficult to ensure the uniformity and synchronization of the transfection process.
  • hundreds of mouse embryos can easily be transfected with one or more electroporation treatments.
  • the exogenous material includes Cas9 protein and sgRNA.
  • the amount of the Cas9 protein in the exogenous material is 2-6 times the amount of the sgRNA by weight.
  • the amount of the Cas9 protein in the exogenous material is 4 times the amount of the sgRNA by weight.
  • the exogenous substance includes: at least one sgRNA, the at least one sgRNA targets different targets respectively; and at least one ssODN corresponding to the sgRNA, the ssODN The sequence of is determined based on a predetermined length flanking the target.
  • sgRNA the at least one sgRNA targets different targets respectively
  • ssODN the ssODN The sequence of is determined based on a predetermined length flanking the target.
  • the exogenous substance includes 2 to 12 sgRNAs, such as 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 sgRNAs.
  • the dosage of each sgRNA is 1 microgram
  • the dosage of the Cas9 protein is 2-6 times of the total amount of the at least one sgRNA, for example, 2, 3, 4, 5 or 6.
  • the dosage of the Cas9 protein is not more than 20 micrograms, preferably not more than 16 micrograms.
  • the electroporation transfection treatment adopts 5-10 pulses, such as 5, 6, 7, 8, 9 or 10 pulses.
  • the electroporation transfection treatment uses 8 pulses.
  • electroporation transfection (“electroporation transfection” and “electrotransfection” can be used interchangeably in this paper) through 8 pulses can effectively improve the transfection efficiency and maintain the embryo’s quality. Viability, especially to achieve high-efficiency gene editing of multiple genes.
  • the inventors treated the zona pellucida with a benchtop solution for 5 seconds, and kept the concentration of each sgRNA at 0.1 ug/ul, while the Cas9 protein concentration was changed to 50% of the total sgRNA concentration. 4 times; at the same time, the inventors further optimized the electrotransfection parameters and used 8 pulses.
  • the table below shows that when the inventors electrotransfected 8 sgRNAs of different genes at the same time in the same embryo, the proportion of at least 6 gene editing at the same time was 100%, and the proportion of gene editing at 8 loci at the same time was 33%. This indicates that the optimized embryo electrotransfection gene editing technology can achieve high-efficiency multi-gene editing.
  • the inventors increased the number of embryos tested for editing efficiency. Four genes were randomly selected for next-generation sequencing, and the multi-gene editing efficiency was counted. As shown in the table below, after calculating the editing efficiency of 10 embryos, the inventors found that the efficiency of simultaneous gene editing at at least 6 sites in the same embryo is 80%, and the efficiency of gene editing at all 8 sites at the same time is high. at 30%.
  • the present invention proposes a method for electrotransfection gene editing of animal fertilized eggs, the advantages of which are at least one of the following:
  • the gene editing efficiency per site is higher than 90%
  • the efficiency statistics of the simultaneous editing of 8 genes have been carried out. up to 100%, while all 8 gene editing efficiencies were higher than 30%.
  • the inventors optimized the treatment of the zona pellucida, and optimized the concentration of Cas9 and sgRNA.
  • High acquisition efficiency of HDR mutant mice according to the embodiment of the present invention, single site gene editing, the acquisition efficiency of HDR mutant mice is higher than 55.6%, and the acquisition efficiency of homozygous HDR mutant mice is higher than 30%. Among them, the efficiency of obtaining mutant mice with single deletion lethal gene is as high as 100%.
  • the present invention provides a method for constructing mutant fertilized egg cells.
  • the method includes: (1) performing a zona weakening treatment on the animal fertilized eggs before the S phase; (2) mixing exogenous substances with the zona pellucida weakened animal fertilized eggs, and performing Electroporation transfection treatment, wherein the exogenous material includes Cas9 protein and at least one sgRNA, and the weight ratio of the Cas9 protein to the at least one sgRNA is 2 to 6:1, preferably 4:1 based on weight .
  • the method can efficiently construct mutant fertilized egg cells with gene mutation, such as gene knockout or gene homologous recombination repair (HDR) mutant fertilized egg cells.
  • gene mutation such as gene knockout or gene homologous recombination repair (HDR) mutant fertilized egg cells.
  • the fertilized egg cells obtained by adopting the above method can be verified by conventional biological methods, such as sequencing and other methods, to verify whether a corresponding mutation occurs at a specific position.
  • the present invention proposes a method for constructing a mutant fertilized egg cell, the mutant fertilized egg cell is a homozygous HDR fertilized egg cell, according to an embodiment of the present invention, the method comprises: (1 ) to weaken the zona pellucida of animal fertilized eggs before the S phase; (2) after mixing the exogenous material with the fertilized eggs of animals with weakened zona pellucida, carry out electroporation transfection treatment to obtain transfected fertilized eggs Egg cell, wherein, the foreign material comprises Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, based on weight, the ratio of the Cas9 protein to the weight of the at least one sgRNA is 2 -6:1; and (3) selecting the homozygous HDR zygote cells from the transfected zygote cells.
  • the weight ratio of the Cas9 protein to the at least one sgRNA is 4:1.
  • the exogenous substance includes: 1-2 kinds of sgRNAs; and 1-2 kinds of ssODNs corresponding to the sgRNAs. According to the embodiment of the present invention, by adopting this method, a high proportion of homozygous HDR fertilized egg cells can be obtained, and even homozygous HDR of two genes can be obtained.
  • the efficiency of gene editing can be effectively improved, so that the construction can be further improved.
  • Efficiency of mutant fertilized egg cells It was also unexpectedly found that the proportion of HDR fertilized egg cells homozygous for one sgRNA could reach 20%.
  • the present invention provides a method for constructing a mutant fertilized egg cell, wherein the mutant fertilized egg cell is a lethal gene single deletion fertilized egg cell.
  • the method includes (1) weakening the zona pellucida on the fertilized eggs of animals before the S phase; (2) mixing the exogenous material with the fertilized eggs of animals subjected to the weakening zona pellucida treatment, and then performing Electroporation transfection treatment to obtain transfected fertilized egg cells, wherein the exogenous material comprises Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, on a weight basis, the Cas9 The weight ratio of protein to the at least one sgRNA is 2-6:1; and (3) selecting the lethal gene single-deletion fertilized egg cells from the transfected fertilized egg cells, wherein the at least one sgRNA and the ssODN was determined based on lethal genes
  • the efficiency of gene editing can be effectively improved, so that the construction can be further improved.
  • Efficiency of mutant fertilized egg cells it was unexpectedly found that in the obtained transfected fertilized egg cells, the proportion of lethal genes with single deletion was as high as 54%, and in these fertilized egg cells, the location where HDR occurred was actually protected Not knocked out or loss of function.
  • a fertilized egg cell having a single deletion lethal gene can be efficiently obtained, and further, the biological activity of the lethal gene can be studied while the fertilized egg cell is alive.
  • mutant animals After the fertilized egg cells are obtained, those skilled in the art can obtain mutant animals by conventional means, these animals carry the mutant genes in the corresponding fertilized egg cells.
  • the present invention provides a method for constructing a mutant animal, according to an embodiment of the present invention, the method comprises: (a) constructing a mutant fertilized egg cell according to the aforementioned method; and (b) growing the mutant fertilized egg cells to obtain the mutant animal.
  • the present invention proposes a method for constructing an animal model.
  • the method includes: (i) based on a predetermined disease type, determining sgRNAs associated with disease-related genes and optionally ssODN; (ii) using the sgRNA and Cas9 protein to construct an animal model according to the method described above.
  • corresponding mutant animals can be constructed for known disease-related genes, so as to be used as animal models for disease research or drug screening.
  • These corresponding associated genes may include, but are not limited to: DHODH, RBM10, SETBP1, GPSM2, FLVCR2, MLL2, WDR35, WDR62, PIGV, SDCCAG8, MASP1, ACAD9, ANGPTL3, FADD, TGM6, CEP152, DHDDS, TECR, ARHGAP31, AARS2 , IMPAD1, BANF1, KIF1A, FAM20A, AP4S1, AP4B1, AP4E1, ZBTB24, NCSTN, VPS35, CCDC8, AKT1, PSMC3IP/HOP2, ADK, KAT6B, MEGF10, WDR19, PRRT2, POLR3A, POLR3B, IDH1, CSF1R, GATAD1, EZH2 , KIF22, KIF22, PLA2G5, PRRT2,
  • the mutant fertilized egg cells constructed by the present invention can be replanted into the female mouse after normal culture in vitro to the two-cell stage, and the corresponding mutant mice can be obtained through the normal development cycle of the embryo.
  • the mutant fertilized egg cells of Emx1, Zswim3, Tyr and lethal gene Foxg1 constructed by the present invention can be replanted into female mice at the two-cell stage to generate mutant mouse models.
  • the genotype identification results of gene mutant mice obtained by replanting mutant fertilized egg cells are as follows. It is worth noting that the fertilized egg cells mutated by the lethal gene Foxg1 cannot normally develop into mice, so the mutant mice with single deletion of the lethal gene can help us to study the biological function of the lethal gene in mice. Foxg1 mutant fertilized eggs, replanted into postnatal mice are all mutants with single deletion lethal gene, and the efficiency is as high as 100%. Therefore, the present invention can effectively construct a mouse animal model with a single deletion lethal gene.
  • Table 5 Types of Mutant Mutants Born After Mutant Fertilized Oocyte Reimplantation
  • KI mutants are mutants containing HDR mutation types.
  • the method for constructing an animal model has the advantage of high acquisition efficiency of HDR mutant mice.
  • the acquisition efficiency of HDR mutant mice is higher than 55.6%, and the acquisition efficiency of homozygous HDR mutant mice is higher than 30%; wherein, the mutant mice with single deletion lethal gene are obtained Efficiency up to 100%.
  • the present invention proposes the use of the mutant animals or animal models constructed according to the aforementioned methods in screening drugs.
  • the present invention proposes a method for weakening the zona pellucida for animal fertilized eggs.
  • the method includes: weakening the zona pellucida for the animal fertilized eggs before S phase Treatment, the zona pellucida weakening treatment is carried out by contacting the fertilized egg cells of the animal with the table solution for 4-10 seconds.
  • the inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection.
  • the efficiency and the efficiency of obtaining homozygous HDR mutants are crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, and if the time is too long, the weakening of the zona pellucida will be too high, which will affect the Embryo survival.
  • electroporation transfection and “electrotransfection” can be used interchangeably herein
  • electroporation transfection can effectively improve the transfection efficiency and maintain The viability of embryos, especially the high-efficiency gene editing of multiple genes.
  • electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
  • the plasmid required to express Cas9 protein is pET28a(-)his(+)HA-NLS-SpCas9.
  • the PET28a-spCas9 plasmid containing the T7 promoter was transformed into Rosetta DE3 according to the experimental procedure provided by competent cells. Briefly, approximately 200 ng of plasmid DNA was added to 50 ⁇ l of freshly thawed competent cells and incubated on ice for 30 min. Heat shock cells by incubating at 42 °C for 60 s, then place cells on ice for 3 min. 500 ⁇ l of LB (Luria Broth) medium was added to the cells and incubated at 37° C. for 1 h in a shaking incubator. Competent cells were then spread evenly onto LB agar plates containing 50 ⁇ g/ml kanamycin and incubated overnight at 37°C.
  • LB Lia Broth
  • Protein expression was induced by adding 2 ml of 100 mM isopropyl-[beta]-D-1-thiogalactopyranoside (IPTG final concentration 200 [mu]M) to each flask. Continue to incubate overnight at 16°C with shaking for 12-16 hours.
  • Cells were harvested by centrifugation at 4000 rpm for 10 minutes in a centrifuge containing a swinging bucket rotor. Pour off the supernatant and use about 40 ml of pre-cooled lysis buffer (20 mM Tris-Cl, pH 8.0, 500 mM NaCl, 10% glycerol, 1 mM TCEP, 1 mM phenylmethylsulfonyl fluoride PMSF) for each liter of bacteria collected. Resuspend the cell pellet. The resuspended cell pellet can either be used directly for further purification or can be snap-frozen in liquid nitrogen and stored at -80°C for several months without loss of Cas9 enzymatic activity.
  • pre-cooled lysis buffer (20 mM Tris-Cl, pH 8.0, 500 mM NaCl, 10% glycerol, 1 mM TCEP, 1 mM phenylmethylsulfonyl fluoride PMSF
  • the resuspended bacteria were disrupted with ultrasonic waves until the bacterial liquid became clear and transparent, and the ultrasonic disruption procedure was performed (ultrasonic for 1 s, stop for 3 s, 50% power, and the total duration was 10 min). Afterwards, the bacterial lysate was transferred to a 50ml Beckman centrifuge tube, and the supernatant and the pellet were separated by centrifugation at 4°C for 30min using a No. 25.5 rotor at 15000rpm. The supernatant containing Cas9 protein was transferred to a nickel column and incubated at 4°C for 1 hour.
  • nickel column material (2 ml) was washed and equilibrated with 20 ml of double-distilled water and 10 ml of bacterial lysis buffer in turn. After the incubation, collect the nickel column flow-through, and wash the nickel column with 50 ml of washing solution (20 mM Tris-Cl, pH 8.0, 250 mM NaCl, 20 mM imidazole, pH 8.0, 5% glycerol) until the washing solution flowing out of the nickel column is no longer Discolors Bradford stain.
  • washing solution (20 mM Tris-Cl, pH 8.0, 250 mM NaCl, 20 mM imidazole, pH 8.0, 5% glycerol
  • the protein on the nickel column was eluted with 50 ml of elution buffer (20 mM Tris-Cl, pH 8.0, 250 mM NaCl, 250 mM imidazole, pH 8.0, 10% glycerol, 1 mM TCEP) until the elution buffer eluted from the nickel column. No longer discolors Bradford stain.
  • the eluted protein solution was transferred to a dialysis membrane with a pore size of 100KDa, and the dialysis membrane loaded with Cas9 protein was placed in 1 L of dialysate (20mM HEPES-KOH, pH 7.0, 125mM KCl, 10% (v/v) glycerol, 1 mM dithiothreitol (DTT)) overnight at 4°C (replace with new dialysate after 3 hours of dialysis).
  • dialysate 20mM HEPES-KOH, pH 7.0, 125mM KCl, 10% (v/v) glycerol, 1 mM dithiothreitol (DTT)
  • the dialysis sample is recovered from the dialysis membrane. Usually, a noticeable precipitation occurs after dialysis. The precipitate was removed by centrifugation at 4000 rpm for 5 minutes at 4°C. 5 ml of HiTrap SP were washed alternately with cation exchange (IEX) buffer A (20 mM HEPES-KOH, pH 7.0, 100 mM KCl, 10% glycerol) and buffer B (20 mM HEPES-KOH, pH 7.0, 1 M KCl, 10% glycerol) HP column (GE Healthcare). After washing, equilibrate the column with buffer A until the curve of salt concentration and UV280 absorbance becomes a straight line, then the UV280 absorbance is automatically zeroed.
  • IEX cation exchange
  • the Cas9 protein was then loaded onto the column using a loading pump at a flow rate of about 5 ml/min. After loading, wash the column with 10 ml of IEX buffer A, and then gradually increase the volume ratio of buffer B in buffer A (from 0% to 50%), and then increase the salt concentration gradient elution binding in Cation exchange on the protein.
  • Cas9 typically elutes in two peaks with different absorbances at 260 and 280 nm (A260/A280). The first peak starts to elute at about 15% IEX buffer B with a maximum at ⁇ 20%, the second peak at ⁇ 25-40% with a maximum at ⁇ 30% , collect eluted protein with collection tubes, 2ml per tube. Fractions of the eluted solution were analyzed for the presence of Cas9 using SDS-PAGE, and the eluates containing Cas9 protein were pooled together.
  • the cation exchange eluate containing Cas9 protein was concentrated to 1 ml using a 100,000 MWCO centrifugal concentrator tube at 4000 rpm.
  • the concentrate was recovered into a 1.5 ml Eppendorf tube and centrifuged at 12,000 rpm for 10 minutes at 4°C to remove precipitated material.
  • a Superdex 200 10/300 gel filtration column (GE Healthcare, 24 ml column volume) was equilibrated with molecular sieve buffer (20 mM HEPES-KOH, pH 7.0, 250 mM KCl, 10% glycerol, 1 mM TCEP).
  • the concentrated Cas9 was injected into the column using a 1 ml sample loop.
  • Cas9 typically elutes in a volume of about 12 ml.
  • the eluates in the collection tubes were analyzed for Cas9 content using SDS-PAGE, and Cas9-containing proteins were pooled together.
  • Cas9 Before use, thaw aliquots and dilute to desired concentration with storage buffer. Cas9 is typically diluted to 2 ⁇ M for endonuclease activity assays. If used for multiple experiments, Cas9 can be stored on ice or at 4°C for at least 2 days without loss of activity. However, it is recommended to periodically check the stored samples for any precipitated material and to check the protein quality by SDS-PAGE.
  • T7 RNA polymerase begins transcription at the underlined G in the T7 promoter sequence, without which transcription hardly occurs. If there is no base G at the 5' end of the guide sequence (the position next to the 3' end of the T7 promoter), you can add one base G, two bases G (the G at the 3' end of the T7 promoter and the 5' of the guide sequence) G) at the end can improve in vitro transcription efficiency and increase sgRNA production (NEB official website).
  • Poly T is added to the 3' end sequence of the sgRNA backbone as a transcription termination signal, and the sequence obtained after reverse complementation is the sgRNA scal R primer sequence: AAAAAAACACCGACTCGGTGCC.
  • the PCR reaction system is as follows:
  • Element Dosage (unit: ⁇ L) pX330 plasmid (10ng/ ⁇ L) 1.0 sgRNA IVT F primer (10 ⁇ M) 1.0 sgRNA scal R primer (10 ⁇ M) 1.0 2 ⁇ vazyme phanta master mix 10.0 ddH2O 6.0
  • the PCR program was as follows: 95°C, 3 min; ⁇ 98°C, 20sec; 60°C, 15sec; 72°C, 15sec ⁇ 35 cycles; 72°C, 1 min; 4°C, ⁇ .
  • Element Dosage (unit: ⁇ L) Nuclease-free water 18-x NTP buffer mix (6.7mM) 10 template DNA x T7 RNA polymerase 2 total capacity 30
  • the actual amount of template DNA is 1 ⁇ g, and the specific amount x ⁇ L is calculated from the concentration of the DNA template recovered from the gel in step 5.
  • RNA product will be combined with the filter element of the adsorption tube, and the remaining substances will enter the receiving tube with the liquid.
  • the designed guide sequence determine its target sequence on the genome, and introduce 2 synonymous mutations (the position of the mutated base is as close to the guide sequence as possible) to identify whether homologous repair occurs, and at the same time prevent the gene function from causing damage influences.
  • the upstream and downstream of the target sequence were respectively extended by 50-55nt, resulting in a ssODN sequence of about 130nt.
  • the sequence information was handed over to Sangon Bioengineering Co., Ltd. for synthesis and purification.
  • each female mouse was intraperitoneally injected with 0.2 mL (10 U) of hCG (chorionic gonadotropin).
  • hCG chorionic gonadotropin
  • the female rat was killed by cervical dislocation, the abdominal cavity was opened, the fallopian tube, uterus and the enlarged ampulla were found, the mucosa attached to the fallopian tube was peeled off with scissors, and a small amount of tissue in the ampulla and its vicinity was cut off (try not to remove the uterus Cut, you can cut a small amount of fallopian tubes), and put them in pre-warmed DPBS.
  • KSOM droplets onto a 3.5mm embryo culture dish, 3 droplets can be added to each culture dish, and the distance between the droplets is appropriate. Add 3 mL of mineral oil to ensure that the droplets can be completely covered. If the droplets are not covered completely, the KSOM droplets will volatilize, and the concentration of each component will change, which will affect the survival of embryos. Petri dishes can be prepared a day in advance and placed in an incubator to equilibrate overnight.
  • the conditions of the incubator are: 5% CO2 concentration, 95% oxygen concentration (oxygen purity ⁇ 99%) concentration, saturated humidity, and constant temperature incubation at 37°C.
  • the table below shows the names of the 8 genes edited at the same time and the corresponding sgRNA sequences.
  • Table 8 Names and corresponding sgRNA sequences of the 8 genes edited simultaneously
  • Electro-to-premix system A Dosage 5 ⁇ RNP buffer 2 ⁇ L Cas9 protein 16 ⁇ g Multiple sgRNAs (1 ⁇ g each, 8ug total) TE buffer Make up to 10 ⁇ L total capacity 10 ⁇ L
  • RNP buffer composition Dosage (mL) 1M HEPES, pH 7.5 1.0 3M Potassium Chloride 2.5 1M magnesium chloride 0.05 100% Glycerin 5.0 5mM TCEP 0.5 Nuclease-free water 0.95 total capacity 10
  • Electrotransfection parameters Voltage 30V Pulses (Pulses) 8 Pulses length 3ms Pulse interval 100ms
  • TIDE F primer and TIDE R primer Use the primer-BLAST on the NCBI website to design a pair of TIDE primers around 300bp upstream and downstream of the editing site, named TIDE F primer and TIDE R primer respectively.
  • the primer sequences were handed over to a biological company for synthesis.
  • QuickExtract is divided into PCR tubes.
  • the dosage of QuickExtract can be 10 ⁇ L.
  • Element Dosage (unit: ⁇ L) Genomic DNA (20ng/ ⁇ L) 2.0 TIDE F primer (10 ⁇ M) 1.0 TIDE R primer (10 ⁇ M) 1.0 2 ⁇ vazyme phanta master mix 10.0 ddH2O 6.0 total capacity 20.0
  • the PCR program was as follows: 95°C, 3 min, ⁇ 98°C, 20sec; Tm°C, 15sec; 72°C, tsec ⁇ 34 cycles, 72°C, 1 min; 4°C, ⁇ .
  • Tm is the annealing temperature, which can be set according to the annealing temperature marked on the side walls of the primers synthesized by the company; t is the extension time.
  • the amplification speed can be calculated by 1kb/60sec ]
  • the second-generation sequencing method is used to accurately identify the type of edited gene.
  • the specific method is as follows: use the primer-BLAST on the NCBI website to separate 100bp upstream and downstream of the editing site.
  • a pair of TIDE primers were designed at nearby positions, named TIDE F1 and TIDE R1 respectively, and the primer binding sequences for next-generation sequencing PCR amplification were added to the 5' ends of the primers.
  • the sequences are as follows. Synthesize.
  • TIDE F1 added sequence: 5'-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-3';
  • TIDE R1 added sequence: 5'-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-3'.
  • TIDE F primer and TIDE R primer to carry out the first round of amplification to the embryo genome according to the reaction system in Table 13, and use the first round product as the substrate for the second round of PCR amplification, according to the reaction in the following table The system was subjected to PCR amplification.
  • Table 14 Second-round PCR system for gene editing result detection by next-generation sequencing
  • sequences of barcode i5 F and barcode i7 R are as follows, NNNNNNNN is the sequence barcode used to label the next-generation sequencing samples, and N is a random base:
  • the sample is added to a 1% agarose gel for electrophoresis, and the electrophoresis condition is 130V for 20min.
  • the PCR target band (calculated according to the band generated by the PCR primers designed by NCBI) is Size, usually about 300bp), cut it out, use the gel recovery kit of Novizan to recover and purify the PCR product, and send the purified product to the next-generation sequencing company for sequencing.
  • the returned sequencing results are analyzed using the software CRISPResso to determine the type of genomic mutation.
  • the software instructions please refer to the software instructions.
  • Example 1 unless otherwise specified, the method of Example 1 was followed.
  • Table 15 Effects of zona pellucida treatment on blastocyst development rate and editing efficiency in mouse embryos
  • the gene editing efficiency of Cas9/sgRNA mixture with different concentration ratios will be different.
  • the inventors have tested this and found that high concentration of Cas9/sgRNA can achieve higher editing efficiency, but considering the possible off-target caused by high concentration of Cas9/sgRNA
  • the inventors reduced the Cas9/sgRNA concentration and achieved 100% gene editing efficiency when the Cas9/sgRNA concentrations were 0.4ug/ ⁇ l and 0.1ug/ ⁇ l respectively; when the concentration was further reduced, the gene editing efficiency was significantly reduce.
  • Table 16 The results are shown in Table 16.
  • the inventors When performing multi-gene editing, the inventors also tested the multi-gene editing efficiency of different concentration ratios of Cas9/sgRNA. According to the concentration of Cas9/sgRNA obtained by single gene editing, the inventors started the test from the total Cas9/sgRNA concentration of 0.4ug/microliter and 0.1ug/microliter respectively, and increased the concentration of Cas9 and sgRNA respectively. The inventors edited 5 genes as a test, and finally found that the multi-gene editing efficiency was the highest when the sgRNA concentration corresponding to each gene was 0.1ug/microliter and the Cas9 concentration was four times the total sgRNA concentration.
  • the inventors When optimizing HDR efficiency, the inventors found that the proportion of heterozygous HDR was high, but homozygous HDR embryos could not be obtained.
  • the inventors optimized the concentration of Cas9/sgRNA/ssODN, the length of ssODN, the parameters of electrotransfection, etc., but no homozygous HDR embryos were obtained. Guessing that it may be the cause of the cell cycle, the inventors tested the time of electrotransfection and found that electrotransfection before S phase can significantly increase the proportion of homozygous HDR. The results are shown in the table below.
  • the inventors Before optimizing the electrotransfection parameters, the inventors have optimized the Cas9/sgRNA concentration and found that the sgRNA concentration corresponding to each gene is 0.1ug/ ⁇ l, and the multi-gene editing efficiency is higher when the Cas9 concentration is four times the total sgRNA concentration. Highest. On this basis, the inventors further optimized the parameters of electrotransfection. The inventor first increased the voltage and found that the embryo blastocyst development rate was significantly reduced under the high voltage condition. Therefore, the inventors kept the voltage unchanged, optimized the number of pulses, and found that the highest multi-gene editing efficiency could be obtained at 8 pulses. The parameter results are shown in the table below.
  • Electrotransfection BTX Gemini2 Electrotransfection Instrument Electrotransfection conditions Electrotransfection parameters Voltage 30V Pulses (Pulses) 8 Pulses length 3ms Pulse interval 100ms
  • the invention establishes a mature and efficient embryo electric transfection gene editing technology, and also establishes a method for efficiently obtaining and obtaining gene mutant mice.
  • the identification results of mutation types of mutant mice born after the reimplantation of Emx1, Zswim3, Tyr and lethal gene Foxg1 mutant fertilized egg cells constructed by the present invention are as follows. It is identified that all the mice obtained by the present invention have undergone gene editing at the corresponding sites, and the editing efficiency is 100%. In addition, using the Foxg1 mutant fertilized egg obtained by the present invention, the replanted mice after birth are all mutants of single deletion lethal gene, and the efficiency is as high as 100%. Therefore, the present invention can greatly improve the efficiency of obtaining mutants of single deletion lethal gene, and effectively promote the biological function research of lethal gene in animals. Except for lethal genes, the other gene-edited mutant zygotes developed into mice with a higher proportion of homozygous HDR mutations, all higher than 30%.
  • Table 20 Types of Mutant Mutants Born After Mutant Fertilized Oocyte Reimplantation
  • KI mutants are mutants containing HDR mutants.
  • the method of this embodiment can realize gene editing by electrotransfection of mouse embryos, and its advantage lies in at least one of the following:
  • Multi-gene editing can be realized at the same time.
  • the efficiency of editing 8 genes at the same time has been calculated.
  • the efficiency of gene editing at least 6 loci in the same embryo is 100%, and the efficiency of all 8 genes at the same time is higher than 30%.
  • a plurality or “at least one” means two or more, unless otherwise expressly and specifically defined.

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Abstract

Provided are a method for gene editing a fertilized animal egg by means of electrotransfection and the use thereof. The method comprises: (1) selecting a fertilized animal egg before the S period to perform weakening treatment on the zona pellucida; and (2) mixing an exogenous substance with an animal fertilized egg, the zona pellucida of which has been subjected to weakening treatment, and then performing electroporation transfection treatment, wherein the exogenous substance comprises the Cas9 protein and sgRNA.

Description

对动物受精卵进行电转染基因编辑的方法及其应用A method for electrotransfection gene editing of animal fertilized eggs and its application 技术领域technical field
本发明涉及生物技术领域,具体的,本发明涉及对动物受精卵进行电转染基因编辑的方法及其应用,更具体的,本发明涉及对动物受精卵进行电转染基因编辑的方法、构建突变受精卵细胞的方法、构建纯合HDR受精卵细胞的方法、构建致死基因单缺失受精卵细胞的方法、构建突变动物的方法以及对动物受精卵进行透明带弱化处理的方法。The present invention relates to the field of biotechnology, in particular, the present invention relates to a method and application of electrotransfection gene editing for animal fertilized eggs, and more specifically, the present invention relates to a method and construction for electrotransfection gene editing of animal fertilized eggs A method for mutating a fertilized egg cell, a method for constructing a homozygous HDR fertilized egg cell, a method for constructing a lethal gene single deletion fertilized egg cell, a method for constructing a mutant animal, and a method for weakening the zona pellucida of the animal zygote.
背景技术Background technique
基因工程小鼠在生物学研究中具有重要意义,据《2018年英国活体动物科学程序年度统计》报导的180万例实验程序,60%的程序以小鼠为实验动物;172万例创造和繁育基因工程动物实验程序中,87%的程序是为培育基因工程小鼠。据报道,中国对模拟人类疾病的动物模型需求激增,基因工程小鼠市场需求快速增长,2022年市场需求将突破15.9亿美元。Genetically engineered mice are of great significance in biological research. According to the 1.8 million experimental procedures reported in the 2018 UK Live Animal Science Procedures Annual Statistics, 60% of the procedures used mice as experimental animals; 1.72 million were created and bred Among the experimental procedures of genetically engineered animals, 87% of the procedures are for breeding genetically engineered mice. According to reports, China's demand for animal models to simulate human diseases has surged, and the market demand for genetically engineered mice is growing rapidly, and the market demand will exceed 1.59 billion US dollars in 2022.
基因工程小鼠需求庞大,但目前对小鼠胚胎进行基因编辑的主流技术为显微注射技术,其通量低、效率低、成本高。同时,构建多基因敲除小鼠模型,其成本高、周期长、成功率低,严重限制了小鼠模型的应用。There is a huge demand for genetically engineered mice, but the current mainstream technology for gene editing of mouse embryos is microinjection technology, which has low throughput, low efficiency and high cost. At the same time, the construction of multi-gene knockout mouse models has high cost, long cycle and low success rate, which severely limits the application of mouse models.
基于电转染的胚胎基因编辑技术近几年刚刚出现,依然处于研究摸索阶段。因此,现有基于电转染的胚胎基因编辑技术仍有待改进。Embryonic gene editing technology based on electrotransfection has just appeared in recent years and is still in the research and exploration stage. Therefore, the existing embryonic gene editing technology based on electrotransfection still needs to be improved.
发明内容SUMMARY OF THE INVENTION
本发明旨在至少在一定程度上解决相关技术中的技术问题之一。为此,本发明的一个目的在于提出一种具有能够有效地将基因编辑系统电转染进入动物胚胎,并实现高效同源重组的手段。The present invention aims to solve one of the technical problems in the related art at least to a certain extent. To this end, an object of the present invention is to provide a means capable of effectively electrotransfecting a gene editing system into animal embryos and realizing efficient homologous recombination.
本发明是基于发明人的下列发现而完成的:The present invention is accomplished based on the following findings of the inventors:
发明人在研究过程中发现,现有的受精卵细胞基因编辑技术效率不稳定,通常只在一到两个单基因上进行了测试,没有稳定地在不同的基因位点上实现高效率的单基因编辑,没有高效的获取纯合的突变受精卵细胞,而且无法实现多基因编辑,这在很大程度上限制了对应稀缺小鼠模型的应用。本发明的发明人在深入分析后,意外发现在进行小鼠胚胎电转染时,用于基因编辑的外源基因导入小鼠胚胎的时间节点对于最终的电转染效率至关重要,从而完成了本发明提出一种能够高效实现电转染外源物质进入受精卵细胞的方法,进一步可以稳定地在不同的基因位点上实现高效率的基因编辑,而高效地获取重组受精卵细胞,这在很大程度上促进了对应稀缺小鼠模型的应用。During the research process, the inventor found that the efficiency of the existing fertilized egg cell gene editing technology is unstable, and it is usually only tested on one or two single genes, and there is no stable realization of high-efficiency single genes at different gene loci. Editing, there is no efficient acquisition of homozygous mutant fertilized egg cells, and multi-gene editing cannot be achieved, which largely limits the application of the corresponding scarce mouse model. After in-depth analysis, the inventors of the present invention unexpectedly found that during electrotransfection of mouse embryos, the time point at which exogenous genes used for gene editing are introduced into mouse embryos is very important for the final electrotransfection efficiency, thus completing the The present invention proposes a method that can efficiently realize electrotransfection of foreign substances into fertilized egg cells, and further can stably achieve high-efficiency gene editing at different gene loci, and efficiently obtain recombinant fertilized egg cells, which is very important. To a large extent, the application of the corresponding scarce mouse model is promoted.
由此,本发明提出了一套高效稳定的动物受精卵细胞(在本文中有时也称为“胚胎”)电转染基因编辑系统,根据本发明的实施例,利用该系统能够增加通量、提高基因编辑敲除效率、提高杂合HDR胚胎比例、提高纯合HDR胚胎比例、实现多基因编辑,从而降低基因工程小鼠的培育成本,为高效培育基因工程小鼠奠定良好基础。Therefore, the present invention proposes an efficient and stable electrotransfection gene editing system for animal fertilized egg cells (sometimes also referred to as "embryo" in this document). Gene editing knockout efficiency, increase the proportion of heterozygous HDR embryos, increase the proportion of homozygous HDR embryos, and realize multi-gene editing, thereby reducing the breeding cost of genetically engineered mice and laying a good foundation for efficient breeding of genetically engineered mice.
在本发明的第一方面,本发明提出了一种对动物受精卵进行电转染基因编辑的方法。根据本发明的实施例,该方法包括:(1)对处于S期以前的动物受精卵进行透明带弱化处理;(2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,其中,所述外源物质包括Cas9蛋白和sgRNA。In the first aspect of the present invention, the present invention provides a method for electrotransfection gene editing of animal fertilized eggs. According to an embodiment of the present invention, the method includes: (1) performing a zona weakening treatment on the animal fertilized eggs before the S phase; (2) mixing exogenous substances with the zona pellucida weakened animal fertilized eggs, and performing Electroporation transfection treatment, wherein the foreign substances include Cas9 protein and sgRNA.
根据本发明的实施例,发明人通过大量实验意外地发现,动物受精卵进行电转染基因编辑时,动物受精卵细胞透明带弱化处理及所处的细胞周期阶段对于电转染基因编辑的效率影响至关重要,其中,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触4~10秒钟,以Cas9蛋白和sgRNA混合物的方式进行电转染,能够有效地提高基因编辑的效率。According to the embodiments of the present invention, the inventors have unexpectedly discovered through a large number of experiments that when animal fertilized eggs undergo electrotransfection gene editing, the weakening of the zona pellucida of animal fertilized eggs and the cell cycle stage they are in have an impact on the efficiency of electrotransfection gene editing It is very important, wherein, the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with the benchtop solution for 4 to 10 seconds, and performing electrotransfection in the form of a mixture of Cas9 protein and sgRNA, which can effectively improve the efficiency of gene editing. efficiency.
当采用S期以前的动物受精卵细胞时,以Cas9蛋白和sgRNA混合物的方式进行电转染,能够有效地提高基因编辑的效率。When using fertilized egg cells from animals before S phase, electrotransfection with a mixture of Cas9 protein and sgRNA can effectively improve the efficiency of gene editing.
本发明的发明人发现,对于动物胚胎,尤其是小鼠胚胎而言,进行透明带弱化处理,具体的是,将动物胚胎与台式液进行接触,该步骤的处理时间长短对于后续电转染的效率以及得到纯合HDR突变体的效率是至关重要的,如果接触的时间过短,则会造成透明带的弱化程度不足,如果时间过长,则会造成透明带弱化程度过高,会影响胚胎的存活。另外,发明人还通过大量实验发现,通过8次脉冲完成电穿孔转染(在本文中“电穿孔转染”与“电转染”可以互换使用)能够有效地提高转染效率,并且维持胚胎的生存活力,尤其是实现多基因的高效率基因编辑。根据本发明的实施例,按照上述步骤处理的动物受精卵,其电转染效率明显得到提高。The inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection. The efficiency and the efficiency of obtaining homozygous HDR mutants are crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, and if the time is too long, the weakening of the zona pellucida will be too high, which will affect the Embryo survival. In addition, the inventors have also found through a large number of experiments that completing electroporation transfection by 8 pulses (“electroporation transfection” and “electrotransfection” can be used interchangeably herein) can effectively improve the transfection efficiency and maintain The viability of embryos, especially the high-efficiency gene editing of multiple genes. According to the embodiments of the present invention, the electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
在本发明的第二方面,本发明提出了一种构建突变受精卵细胞的方法。根据本发明的实施例,该方法包括:(1)对处于S期以前的动物受精卵进行透明带弱化处理;(2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,其中,所述外源物质包括Cas9蛋白和至少一种sgRNA,基于重量,所述Cas9蛋白与所述至少一种sgRNA重量的比例为2~6:1。In a second aspect of the present invention, the present invention provides a method for constructing mutant fertilized egg cells. According to an embodiment of the present invention, the method includes: (1) performing a zona weakening treatment on the animal fertilized eggs before the S phase; (2) mixing exogenous substances with the zona pellucida weakened animal fertilized eggs, and performing Electroporation transfection treatment, wherein the exogenous substance includes Cas9 protein and at least one sgRNA, and the weight ratio of the Cas9 protein to the at least one sgRNA is 2-6:1 based on weight.
如前所述,根据本发明的实施例,采用S期以前的动物受精卵细胞时,并且以Cas9蛋白和sgRNA混合物的方式进行电转染,能够有效地提高基因编辑的效率,从而可以进一步提高构建突变受精卵细胞的效率。As mentioned above, according to the embodiments of the present invention, when the fertilized egg cells of animals before S phase are used, and electrotransfection is carried out in the form of a mixture of Cas9 protein and sgRNA, the efficiency of gene editing can be effectively improved, so that the construction can be further improved. Efficiency of mutant fertilized egg cells.
在本发明的第三方面,本发明提出了一种构建突变受精卵细胞的方法,所述突变受精卵细胞为纯合HDR受精卵细胞,根据本发明的实施例,所述方法包括:(1)对处于S期以前的动物受精卵进行透明带弱化处理;(2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,以便获得经过转染的受精卵细胞,其中,所述外源物质包括Cas9蛋白、至少一种sgRNA和至少一种与所述sgRNA对应的ssODN,其中,基于重量,所述Cas9蛋白与所述至少一种sgRNA重量的比例为2~6:1;和(3)从所述经过转染的受精卵细胞中选择所述纯合HDR受精卵细胞。纯合HDR受精卵细胞的比例能够达到20%。In the third aspect of the present invention, the present invention provides a method for constructing a mutant fertilized egg cell, the mutant fertilized egg cell is a homozygous HDR fertilized egg cell, according to an embodiment of the present invention, the method includes: (1) The fertilized eggs of animals before the S phase are treated with weakened zona pellucida; (2) after mixing the exogenous material with the fertilized eggs of animals with weakened zona pellucida, electroporation is performed to obtain transfected fertilized egg cells, wherein , the exogenous material includes Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, based on the weight, the weight ratio of the Cas9 protein to the at least one sgRNA is 2 to 6: 1; and (3) selecting the homozygous HDR zygote from the transfected zygote. The proportion of homozygous HDR fertilized eggs can reach 20%.
如前所述,根据本发明的实施例,采用S期以前的动物受精卵细胞时,并且以Cas9蛋 白和sgRNA混合物的方式进行电转染,能够有效地提高基因编辑的效率,从而可以进一步提高构建突变受精卵细胞的效率。另外意外地发现,纯合HDR受精卵细胞的比例能够达到20%。As mentioned above, according to the embodiments of the present invention, when the fertilized egg cells of animals before S phase are used, and electrotransfection is carried out in the form of a mixture of Cas9 protein and sgRNA, the efficiency of gene editing can be effectively improved, so that the construction can be further improved. Efficiency of mutant fertilized egg cells. It was also unexpectedly found that the proportion of homozygous HDR fertilized egg cells could reach 20%.
在本发明的第四方面,本发明提出了一种构建突变受精卵细胞的方法,所述突变受精卵细胞为致死基因单缺失受精卵细胞。根据本发明的实施例,所述方法包括(1)对处于S期以前的动物受精卵进行透明带弱化处理;(2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,以便获得经过转染的受精卵细胞,其中,所述外源物质包括Cas9蛋白、至少一种sgRNA和至少一种与所述sgRNA对应的ssODN,其中,基于重量,所述Cas9蛋白与所述至少一种sgRNA重量的比例为2~6:1;和(3)从所述经过转染的受精卵细胞中选择所述致死基因单缺失受精卵细胞,其中,所述至少一种sgRNA和所述ssODN是基于致死基因确定的。In the fourth aspect of the present invention, the present invention provides a method for constructing a mutant fertilized egg cell, wherein the mutant fertilized egg cell is a lethal gene single deletion fertilized egg cell. According to an embodiment of the present invention, the method includes (1) weakening the zona pellucida on the fertilized eggs of animals before the S phase; (2) mixing the exogenous material with the fertilized eggs of animals subjected to the weakening zona pellucida treatment, and then performing Electroporation transfection treatment to obtain transfected fertilized egg cells, wherein the exogenous material comprises Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, on a weight basis, the Cas9 The weight ratio of protein to the at least one sgRNA is 2-6:1; and (3) selecting the lethal gene single-deletion fertilized egg cells from the transfected fertilized egg cells, wherein the at least one sgRNA and the ssODN was determined based on lethal genes.
如前所述,根据本发明的实施例,采用S期以前的动物受精卵细胞时,并且以Cas9蛋白和sgRNA混合物的方式进行电转染,能够提高构建突变受精卵细胞的效率。另外根据本发明的实施例,意外地发现,在所得到的经过转染的受精卵细胞中,存在单缺失的致死基因比例高达54%,从而,能够有效地获得具有单缺失致死基因的受精卵细胞,进一步,可以在受精卵细胞存活的状态下研究该致死基因的生物活性。As mentioned above, according to the embodiments of the present invention, the efficiency of constructing mutant fertilized egg cells can be improved when the fertilized egg cells of animals before S phase are used, and electrotransfection is performed in the form of a mixture of Cas9 protein and sgRNA. In addition, according to the embodiments of the present invention, it was unexpectedly found that in the obtained transfected fertilized egg cells, the proportion of lethal genes with single deletions was as high as 54%, so that fertilized egg cells with single deletion lethal genes could be effectively obtained, Furthermore, the biological activity of the lethal gene can be studied in the state where the fertilized egg cell is alive.
在本发明的第五方面,本发明提出了一种构建突变动物的方法,根据本发明的实施例,该方法包括:(a)按照前面所述的方法,构建突变受精卵细胞;和(b)培育所述突变受精卵细胞,以便获得所述突变动物。In the fifth aspect of the present invention, the present invention provides a method for constructing a mutant animal, according to an embodiment of the present invention, the method comprises: (a) constructing a mutant fertilized egg cell according to the aforementioned method; and (b) The mutant fertilized egg cells are grown to obtain the mutant animal.
如前所述,在前面获得纯合HDR受精卵细胞或者致死基因单缺失的受精卵细胞基础上,可以进一步获得携带这些基因突变的动物。由此,这些动物可以用于进行基因研究或者药物筛选。As mentioned above, on the basis of obtaining homozygous HDR fertilized oocytes or fertilized oocytes with single deletion of lethal gene, animals carrying these gene mutations can be further obtained. Thus, these animals can be used for genetic studies or drug screening.
在本发明的第六方面,本发明提出了一种构建动物模型的方法,根据本发明的实施例,该方法包括:(i)基于预定疾病类型,确定与疾病关联基因相关的sgRNA以及任选的ssODN;(ii)利用所sgRNA和Cas9蛋白,按照前面所述的方法构建动物模型。In the sixth aspect of the present invention, the present invention proposes a method for constructing an animal model. According to an embodiment of the present invention, the method includes: (i) based on a predetermined disease type, determining sgRNAs associated with disease-related genes and optionally ssODN; (ii) using the sgRNA and Cas9 protein to construct an animal model according to the method described above.
由此,根据本发明的实施例,可以针对已知的疾病关联基因进行构建相应的突变动物,从而可以作为用于该疾病研究或者药物筛选的动物模型。Thus, according to the embodiments of the present invention, corresponding mutant animals can be constructed for known disease-related genes, so as to be used as animal models for disease research or drug screening.
在本发明的第七方面,本发明提出按照前面所述的方法构建的突变动物或动物模型在筛选药物中的用途。In the seventh aspect of the present invention, the present invention proposes the use of the mutant animals or animal models constructed according to the aforementioned methods in screening drugs.
在本发明的第八方面,本发明提出了一种对动物受精卵进行透明带弱化处理的方法,根据本发明的实施例,该方法包括:将处于S期以前的动物受精卵进行透明带弱化处理,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触4~10秒钟进行的。In the eighth aspect of the present invention, the present invention proposes a method for weakening the zona pellucida for animal fertilized eggs. According to an embodiment of the present invention, the method includes: weakening the zona pellucida for the animal fertilized eggs before S phase Treatment, the zona pellucida weakening treatment is carried out by contacting the fertilized egg cells of the animal with the table solution for 4-10 seconds.
本发明的发明人发现,对于动物胚胎,尤其是小鼠胚胎而言,进行透明带弱化处理,具体的是,将动物胚胎与台式液进行接触,该步骤的处理时间长短对于后续电转染的效率以及得到纯合HDR突变体的效率是至关重要的,如果接触的时间过短,则会造成透明带的弱化程度不足,如果时间过长,则会造成透明带弱化程度过高,会影响胚胎的存活。另外, 发明人还通过大量实验发现,通过8次脉冲完成电穿孔转染(在本文中“电穿孔转染”与“电转染”可以互换使用)能够有效地提高转染效率,并且维持胚胎的生存活力,尤其是实现多基因的高效率基因编辑。根据本发明的实施例,按照上述步骤处理的动物受精卵,其电转染效率明显得到提高。The inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection. The efficiency and the efficiency of obtaining homozygous HDR mutants are crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, and if the time is too long, the weakening of the zona pellucida will be too high, which will affect the Embryo survival. In addition, the inventors have also found through a large number of experiments that completing electroporation transfection by 8 pulses (“electroporation transfection” and “electrotransfection” can be used interchangeably herein) can effectively improve the transfection efficiency and maintain the transfection efficiency. The viability of embryos, especially the high-efficiency gene editing of multiple genes. According to the embodiments of the present invention, the electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
需要说明的是,在不同方面所描述的方案、特征和优点,除非特别说明,是可以互相适用的,在此不再赘述。It should be noted that the solutions, features and advantages described in different aspects are mutually applicable unless otherwise specified, and are not repeated here.
附图说明Description of drawings
图1显示了根据本发明的一个实施例利用设计的针对小鼠胚胎Emx1基因电转染基因编辑后一代测序的结果,有套峰的地方就说明存在不同基因组序列,说明产生了基因编辑。Figure 1 shows the results of next-generation sequencing after gene editing by electrotransfection of the mouse embryo Emx1 gene designed according to an embodiment of the present invention. Where there are sets of peaks, it indicates the existence of different genome sequences, indicating that gene editing has occurred.
图2显示了根据本发明的一个实施例纯合HDR突变体一代测序结果图,其中,红色矩形所示区域,碱基全部变为和ssODN相同的突变,并且无杂峰出现,编辑的靶标基因为Emx1,sgRNA的向导序列为GAGTCTGAGCAGAAGAAGAA,对应的ssODN序列为GAGTCCGAGCAGAAGAAAAA。ssODN总长为130nt,其余碱基序列与小鼠基因组相同。Fig. 2 shows the results of first-generation sequencing of homozygous HDR mutants according to an embodiment of the present invention, wherein, in the region shown by the red rectangle, all bases are changed to the same mutation as ssODN, and no spurious peaks appear, and the edited target base Because of Emx1, the guide sequence of sgRNA is GAGTCTGAGCAGAAGAAGAA, and the corresponding ssODN sequence is GAGTCCGAGCAGAAGAAAAA. The total length of ssODN is 130nt, and the rest of the base sequence is the same as that of the mouse genome.
具体实施方式Detailed ways
下面详细描述本发明的实施例,下面通过参考附图描述的实施例是示例性的,旨在用于解释本发明,而不能理解为对本发明的限制。其中,在本文中所使用的试剂除非特别说明,均为本领域中可以商业购买的。The embodiments of the present invention will be described in detail below. The embodiments described below with reference to the accompanying drawings are exemplary, and are intended to be used to explain the present invention, but should not be construed as a limitation of the present invention. Among them, the reagents used in this paper are commercially available in the art unless otherwise specified.
术语定义Definition of Terms
除非特别说明,本发明中所使用的术语为本领域中公知的含义,其中,Unless otherwise specified, the terms used in the present invention have the meanings known in the art, wherein,
在文本中使用的术语“受精卵”或者“受精卵细胞”是指精子和卵子进行受精并且卵原核和精原核的染色体融合在一起之后,但并未进行分裂的合子细胞,在本文中由于采集受精卵细胞是按照采集胚胎的方式进行采集的,因此,有时也会称这个阶段的受精卵细胞为“胚胎”。The term "fertilized egg" or "fertilized egg cell" as used in the text refers to a zygotic cell that does not divide after the sperm and egg are fertilized and the chromosomes of the egg pronucleus and sperm pronucleus are fused together, in this context due to the collection of fertilization Egg cells are collected in the same way as embryos are collected, so fertilized egg cells at this stage are sometimes called "embryos".
在本文中使用的术语“电转染”有时也称为“电穿孔(Electroporation)”,是通过高强度的电场作用,瞬时提高细胞膜的通透性,从而吸收周围介质中的外源分子。在本文中,通过该技术将外源物质导入到受精卵细胞内部,主要的外源物质是包括Cas9蛋白和sgRNA,另外根据情况需要还可以添加ssODN。其中,Cas9蛋白发挥分子剪刀的作用,sgRNA也称为小向导RNA(small guide RNA,sgRNA)发挥引导作用,可以将Cas9蛋白导引至靶基因使其发挥分子剪刀的功能。单链寡聚核苷酸(single-stranded oligodeoxyribonucleotide,ssODN)作为同源重组修复模板可以促进同源重组修复以实现基因序列的替换。本领域技术人员可以采用常规的电转染设备进行电转染处理。The term "electrotransfection" as used herein, also sometimes referred to as "electroporation", is the transient increase in the permeability of the cell membrane through the action of a high-intensity electric field, thereby absorbing foreign molecules in the surrounding medium. In this paper, exogenous substances are introduced into the fertilized egg cells by this technology. The main exogenous substances include Cas9 protein and sgRNA, and ssODN can also be added according to the situation. Among them, Cas9 protein plays the role of molecular scissors, and sgRNA, also known as small guide RNA (sgRNA), plays a guiding role, which can guide Cas9 protein to the target gene to make it play the function of molecular scissors. Single-stranded oligodeoxyribonucleotide (ssODN) as a template for homologous recombination repair can promote homologous recombination repair to achieve gene sequence replacement. Those skilled in the art can use conventional electrotransfection equipment for electrotransfection treatment.
在本文中使用的术语“基因编辑”是指是能对生物体基因组特定目标基因(也称为“靶基因”或者“靶标”)进行修饰(包括但不限于插入、删除或者替换),根据本发明的实 施例,在sgRNA(识别目标基因)的引导下,采用作为“分子剪刀”的核酸酶Cas9,在基因组中特定位置产生位点特异性双链断裂(DSB),进一步诱导生物体通过非同源末端连接(NHEJ)或同源重组(HR)(也称为“HDR”(Homology directed repair,同源介导的双链DNA修复))来修复DSB,从而实现特定的修饰,其中,为了提高同源重组介导的双链DNA修复(HDR)的效率会添加额外的基于靶基因序列设计的单链寡聚核苷酸(single-stranded oligodeoxyribonucleotide,ssODN)作为同源重组修复模板。The term "gene editing" as used herein refers to the modification (including but not limited to insertion, deletion or substitution) of a specific target gene (also referred to as "target gene" or "target") in the genome of an organism, according to the present In the embodiment of the invention, under the guidance of sgRNA (recognition target gene), the nuclease Cas9 as "molecular scissors" is used to generate site-specific double-strand breaks (DSBs) at specific positions in the genome, and further induce the organism to pass non- Homologous end joining (NHEJ) or homologous recombination (HR) (also known as "HDR" (Homology directed repair, homology-mediated double-stranded DNA repair)) to repair DSBs to achieve specific modifications, wherein, in order to Improving the efficiency of homologous recombination-mediated double-stranded DNA repair (HDR) adds additional single-stranded oligodeoxyribonucleotides (ssODN) designed based on target gene sequences as templates for homologous recombination repair.
在本文中所使用的术语“致死基因”是指在在对二倍体细胞的两个等位基因均进行突变或者敲除时,会造成细胞死亡的基因。根据本发明的实施例,可以采用的“致死基因”包括但不限于Pkd1、FoxG1、Chd2、Virma、c-myc、p38α和dUTPase的至少之一。需要说明的是,在对细胞进行基因编辑时,如果二倍体细胞致死基因的两个等位基因均被敲除或者突变,极大可能会造成细胞死亡,因此在进行功能研究时,需要进行单敲除,即敲除一个等位基因上的致死基因,由此,可以确保致死基因被进行基因编辑后,所得到的的重组细胞尤其是受精卵细胞仍能够存活。The term "lethal gene" as used herein refers to a gene that causes cell death when both alleles are mutated or knocked out in diploid cells. According to an embodiment of the present invention, a "lethal gene" that can be used includes, but is not limited to, at least one of Pkd1, FoxG1, Chd2, Virma, c-myc, p38α and dUTPase. It should be noted that during gene editing of cells, if both alleles of the diploid cell-killing gene are knocked out or mutated, it is very likely to cause cell death. Therefore, when performing functional studies, it is necessary to carry out Single knockout, that is, knocking out a lethal gene on one allele, can ensure that after the lethal gene is edited, the resulting recombinant cells, especially fertilized egg cells, can still survive.
在本文中所使用的术语“透明带弱化处理”是指,与未经过处理的胚胎(或者受精卵细胞)相比,其透明带至少一部分被去除。根据本发明的实施例,透明带是卵母细胞质膜周围的糖蛋白层,可能会形成屏障,会阻止CRISPR/Cas9成分通过电穿孔进入受精卵,从而会影响后续基因编辑的效率,另外,对透明带的过度处理又可能会影响受精卵细胞的生存状态。根据本发明的实施例,可以使用的台式液进行透明带弱化处理。As used herein, the term "zona pellucida attenuating treatment" refers to the removal of at least a portion of the zona pellucida compared to untreated embryos (or fertilized egg cells). According to the embodiment of the present invention, the zona pellucida is the glycoprotein layer around the plasma membrane of the oocyte, which may form a barrier and prevent the CRISPR/Cas9 components from entering the fertilized egg through electroporation, thereby affecting the efficiency of subsequent gene editing. Excessive treatment of the zona pellucida may affect the survival of fertilized egg cells. According to an embodiment of the present invention, the benchtop liquid that can be used can be used for zona weakening treatment.
在本文中所使用的术语“S期”和“G1”期是指受精卵细胞在细胞周期中所处于的位置。细胞周期(cell cycle)是指细胞从一次分裂完成开始到下一次分裂结束所经历的全过程,分为间期与分裂期(M期)两个阶段。其中,间期又分为三期、即DNA合成前期(G1期)、DNA合成期(S期)与DNA合成后期(G2期)。G1期为从有丝分裂到DNA复制前的一段时期,又称合成前期,此期主要合成RNA和核糖体。该期特点是物质代谢活跃,迅速合成RNA和蛋白质,细胞体积显著增大。S期为DNA合成期,在此期,除了合成DNA外,同时还要合成组蛋白。DNA复制所需要的酶都在这一时期合成。G2期为DNA合成后期,是有丝分裂的准备期。在这一时期,DNA合成终止,大量合成RNA及蛋白质,包括微管蛋白和促成熟因子等。在本文中所使用的术语“S期之前”是指受精卵细胞处于S期或者G1期甚至G0期(即停止分裂状态的时期,对于受精卵细胞比较少见),其中,优选G1期。本领域技术人员可以通过常规的手段,例如显微镜下观察形态变化或者染色手段来区分受精卵细胞所处于的周期阶段。另外,根据本发明发明人的多次试验发现,对于小鼠而言,雌雄同笼次日10点之前优选9点半之前,可以确保动物受精卵处于S期之前,通常为处于G1期。As used herein, the terms "S phase" and "G1" phase refer to the position of the fertilized egg cell in the cell cycle. The cell cycle refers to the whole process that a cell undergoes from the completion of one division to the end of the next division, and is divided into two phases: interphase and division phase (M phase). Among them, the interphase is divided into three phases, namely the early DNA synthesis phase (G1 phase), the DNA synthesis phase (S phase) and the late DNA synthesis phase (G2 phase). G1 phase is a period from mitosis to DNA replication, also known as the pre-synthesis period, which mainly synthesizes RNA and ribosomes. This period is characterized by active material metabolism, rapid synthesis of RNA and protein, and a significant increase in cell volume. The S phase is the DNA synthesis phase. During this phase, in addition to DNA synthesis, histones are also synthesized. The enzymes required for DNA replication are synthesized during this period. The G2 phase is the late stage of DNA synthesis and is the preparation period for mitosis. During this period, DNA synthesis is terminated, and a large amount of RNA and proteins are synthesized, including tubulin and maturation-promoting factors. The term "before S phase" as used herein means that the fertilized egg cell is in S phase or G1 phase or even G0 phase (ie, the period in which division is stopped, which is rare for fertilized egg cells), wherein G1 phase is preferred. Those skilled in the art can distinguish the cycle stage in which the fertilized egg cells are by conventional means, such as observing morphological changes under a microscope or staining. In addition, according to many experiments conducted by the inventors of the present invention, it is found that for mice, before 10:00 on the next day in the same cage, preferably before 9:30, the fertilized eggs of the animals can be ensured to be in the S phase, usually in the G1 phase.
在本文中使用的术语“台式液”Tyrode's solution属于平衡盐溶液的一种,主要由氯化钠、磷酸盐、氯化钙、葡萄糖等组成,不含HEPES。根据本发明的一些实施例,1000ml台式液含有NaCl 8.0g、10%KCl 2.0ml(0.2g)、10%MgSO 4.7H 2O 2.6ml(0.26g)、5%NaH 2PO 4.2H 2O 1.3ml(0.065g)、NaHCO 3 1.0g、1M CaCl 2 1.8ml(0.2g)和葡萄糖1.0g。 The term "benchtop solution" used in this article, Tyrode's solution, belongs to a kind of balanced salt solution, mainly composed of sodium chloride, phosphate, calcium chloride, glucose, etc., without HEPES. According to some embodiments of the present invention, 1000ml benchtop solution contains NaCl 8.0g, 10% KCl 2.0ml (0.2g), 10% MgSO 4 .7H 2 O 2.6ml (0.26g), 5% NaH 2 PO 4 .2H 2 O 1.3ml (0.065g), NaHCO3 1.0g, 1M CaCl2 1.8ml (0.2g) and glucose 1.0g.
在本文中所使用的术语“用量”如无特别说明指的是重量单位。As used herein, the term "amount" refers to weight units unless otherwise specified.
在本文中使用的术语“突变受精卵细胞”的含义是,受精卵细胞的基因组与未突变的受精卵细胞的基因组(或者野生型基因组)相比,存在至少一处变异,该变异可以一个或者多个碱基甚至核苷酸片段的插入、缺失和/或替换,从而可以对相应基因的功能进行调节或者改变,例如实现基因的表达上调或下调、新基因的敲入或者野生型基因的编码或者非编码序列的改变、野生型基因的敲除等。有时“突变细胞”也称为“重组细胞”,是可以互换使用的。As used herein, the term "mutated fertilized egg cell" means that the genome of the fertilized egg cell has at least one variation compared to the genome of the unmutated fertilized egg cell (or the wild-type genome), the variation being one or more bases The insertion, deletion and/or substitution of bases or even nucleotide fragments, so that the function of the corresponding gene can be regulated or changed, such as the up-regulation or down-regulation of gene expression, the knock-in of new genes, or the coding or non-coding of wild-type genes. Sequence changes, knockout of wild-type genes, etc. Sometimes "mutant cells" are also called "recombinant cells" and are used interchangeably.
在本文中使用的术语“纯合”是指对于二倍体,两个同源染色体具有相同的等位基因或者突变,例如对于一对同源染色体上的一条染色体敲除了基因A,另一条染色体也敲除了基因A,则该细胞针对基因A是“纯合”突变的。As used herein, the term "homozygous" means that for diploidy, two homologous chromosomes have the same allele or mutation, eg, for a pair of homologous chromosomes, gene A is knocked out on one chromosome and the other chromosome Gene A is also knocked out, and the cell is "homozygous" for the gene A mutation.
在本文中使用的术语“纯合HDR”是指一对同源染色体的特定位置均发生了“HDR”(Homology directed repair,同源介导的双链DNA修复)。由此,该特定位置所对应的基因发生了相同的功能变化,例如上调、下调、氨基酸突变或者功能缺失。The term "homozygous HDR" as used herein refers to the occurrence of "HDR" (Homology directed repair, homology-mediated double-stranded DNA repair) at a specific location on a pair of homologous chromosomes. As a result, the same functional change occurs in the gene corresponding to the specific position, such as up-regulation, down-regulation, amino acid mutation or functional loss.
在本文中使用的术语“单缺失”是指针对一对同源染色体的特定基因,一条染色体上的该特定基因的功能发生变化,例如功能丧失或者表达量比野生型下降,另一条染色体上的该基因的功能没有发生变化。如前所述,对于致死基因而言,如果二倍体细胞致死基因的两个等位基因均被敲除或者突变,极大可能会造成细胞死亡,因此在进行功能研究时,需要进行单敲除,即敲除一个等位基因上的致死基因,由此,可以确保致死基因被进行基因编辑后,所得到的的重组细胞尤其是受精卵细胞仍能够存活。The term "single deletion" as used herein refers to a specific gene for a pair of homologous chromosomes, the function of which is changed on one chromosome, such as loss of function or decreased expression compared to wild type, and the other chromosome The function of the gene did not change. As mentioned above, for lethal genes, if both alleles of the diploid cell lethal gene are knocked out or mutated, it is very likely to cause cell death. Therefore, when conducting functional studies, single knockout is required. Deletion, that is, knocking out the lethal gene on an allele, thus ensures that after the lethal gene is gene-edited, the resulting recombinant cells, especially fertilized egg cells, can still survive.
对动物受精卵进行电转染基因编辑的方法A method for electrotransfection gene editing of animal fertilized eggs
本发明是基于发明人的下列发现而完成的:The present invention is accomplished based on the following findings of the inventors:
发明人在研究过程中发现,现有的通过基因编辑获得同源定向修复(HDR)受精卵细胞的效率比较低或基因编辑效率不稳定,通常只在一到两个单基因上进行了测试,没有稳定地在不同的基因位点上实现高效率的单基因编辑,而且没有高效的获取纯合的突变受精卵细胞,这在很大程度上限制了对应稀缺小鼠模型的应用。本发明的发明人在深入分析后,意外发现在进行小鼠胚胎电转染用于基因编辑的外源基因的处理时机对于最终的电转染效率至关重要,从而完成了本发明提出一种能够高效实现电转染外源物质进入受精卵细胞的方法,进一步可以稳定地在不同的基因位点上实现高效率的基因编辑,而高效地获取重组受精卵细胞,这在很大程度上促进了对应稀缺小鼠模型的应用。During the research process, the inventors found that the existing homology-directed repair (HDR) fertilized egg cells obtained by gene editing are relatively inefficient or the gene editing efficiency is unstable. Usually, only one or two single genes have been tested. High-efficiency single-gene editing is stably achieved at different gene loci, and homozygous mutant zygotes are not efficiently obtained, which largely limits the application of corresponding scarce mouse models. After in-depth analysis, the inventor of the present invention unexpectedly found that the processing timing of the exogenous gene used for gene editing in the electrotransfection of mouse embryos is very important for the final electrotransfection efficiency, thus completing the present invention. The method that can efficiently realize electrotransfection of foreign substances into fertilized egg cells can further realize high-efficiency gene editing at different gene loci, and efficiently obtain recombinant fertilized egg cells, which greatly promotes the corresponding Applications of scarce mouse models.
由此,本发明提出了一套高效稳定的动物受精卵细胞(在本文中有时也称为“胚胎”)电转染基因编辑系统,根据本发明的实施例,利用该系统能够增加通量、提高基因编辑效率、提高重组受精卵细胞的比例、实现多基因编辑,从而降低基因工程小鼠的培育成本,为高效培育基因工程小鼠奠定良好基础。Therefore, the present invention proposes an efficient and stable electrotransfection gene editing system for animal fertilized egg cells (sometimes also referred to as "embryo" in this document). Gene editing efficiency, increase the proportion of recombinant fertilized egg cells, and realize multi-gene editing, thereby reducing the cost of breeding genetically engineered mice and laying a good foundation for the efficient breeding of genetically engineered mice.
在本发明的第一方面,本发明提出了一种对动物受精卵进行电转染基因编辑的方法。根据本发明的实施例,该方法包括:In the first aspect of the present invention, the present invention provides a method for electrotransfection gene editing of animal fertilized eggs. According to an embodiment of the present invention, the method includes:
首先,对处于S期以前的动物受精卵进行透明带弱化处理。First, the zona pellucida was weakened on the fertilized eggs of animals before the S phase.
本发明的发明人发现,在电转染引入外源物质的过程中,动物受精卵细胞透明带的存在会阻碍外源物质进入受精卵细胞。因此,需要通过对透明带进行弱化处理,从而能够有助于外源物质进入受精卵细胞。The inventors of the present invention found that in the process of introducing foreign substances by electrotransfection, the presence of the zona pellucida in animal fertilized egg cells would prevent the foreign substances from entering the fertilized egg cells. Therefore, it is necessary to weaken the zona pellucida to facilitate the entry of foreign substances into fertilized egg cells.
对于动物胚胎,尤其是小鼠胚胎而言,进行透明带弱化处理,根据本发明的实施例,通过将动物胚胎与台式液进行接触,该步骤的处理时间长短对于后续电转染的效率是至关重要的,如果接触的时间过短,则会造成透明带的弱化程度不足,降低基因编辑效率,如果时间过长,则会造成透明带弱化程度过高,会影响胚胎的存活。For animal embryos, especially mouse embryos, the zona pellucida weakening treatment is performed. According to the embodiment of the present invention, by contacting the animal embryos with the benchtop liquid, the treatment time of this step is as long as the efficiency of subsequent electrotransfection is up to Crucially, if the contact time is too short, the weakening of the zona pellucida will be insufficient, reducing the efficiency of gene editing. If the contact time is too long, the weakening of the zona pellucida will be too high, which will affect the survival of the embryo.
根据本发明的实施例,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触0~40秒钟进行的。优选的,根据本发明的实施例,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触5秒钟进行的。由此,可以确保在提高电转染效率的同时,能够不影响胚胎或者受精卵细胞在电转染后的存活能力。According to an embodiment of the present invention, the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with the table solution for 0-40 seconds. Preferably, according to an embodiment of the present invention, the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with the bench top liquid for 5 seconds. Therefore, it can be ensured that while the electrotransfection efficiency is improved, the viability of embryos or fertilized egg cells after electrotransfection is not affected.
根据本发明的实施例,所述动物为哺乳动物。根据本发明的实施例,所述动物包括啮齿类动物、犬、猫、兔、猴。根据本发明的实施例,所动物包括小鼠和大鼠。According to an embodiment of the present invention, the animal is a mammal. According to an embodiment of the present invention, the animals include rodents, dogs, cats, rabbits, and monkeys. According to embodiments of the present invention, the animals include mice and rats.
如前所述,根据本发明的实施例,所述动物受精卵处于G1期。根据本发明的实施例,在受精后10小时内,完成所述电穿孔转染处理。As mentioned above, according to an embodiment of the present invention, the fertilized egg of the animal is in the G1 phase. According to an embodiment of the present invention, the electroporation transfection process is completed within 10 hours after fertilization.
根据本发明的实施例,所述动物为啮齿科动物,可选的,所述啮齿科动物包括小鼠、大鼠。根据本发明的实施例,所述动物受精卵细胞处于S期以前。According to an embodiment of the present invention, the animals are rodents, and optionally, the rodents include mice and rats. According to an embodiment of the present invention, the fertilized egg cell of the animal is before S phase.
根据本发明的实施例,发明人通过大量实验意外发现,进行电转染处理的时间非常重要,根据本发明的实施例,当动物胚胎处于S期之前,优选G1期时,通过电转染能够有效地提高获得基因突变的效率,尤其是多基因的纯合突变的效率。如前所述,在实践操作中,可以按照在雌雄同笼次日10点之前启动转染处理,从而电转染处理可以在10点之前结束,例如9点之前,8点之前,7点之前,6点之前等,其中,优选的是,在9点至9点半进行的。发明人认为可能的原因是鼠胚胎从受精到进入S期,需10个小时。可以默认小鼠交配、受精的实际时间,但通常认为小鼠的交配时间在午夜12点,因此,发明人认为需要需在合笼后的次日上午10时之前完成从胚胎采集到电转染的一系列操作。需要说明的是,根据本发明的实施例,当采用其他手段,例如注射法时,通常操作效率低,对于超过100个小鼠胚胎,将很难在10点之前结束全部转染操作,并且由于操作的持续时间久,所以很难能够保证转染处理的均一性和同步性。According to the embodiment of the present invention, the inventor unexpectedly discovered through a large number of experiments that the time for electrotransfection treatment is very important. Effectively improve the efficiency of obtaining gene mutations, especially the efficiency of homozygous mutations of multiple genes. As mentioned earlier, in practice, the transfection process can be started before 10 o'clock the next day in the hermaphroditic cage, so that the electrotransfection process can be completed before 10 o'clock, for example, before 9 o'clock, before 8 o'clock, before 7 o'clock , before 6 o'clock, etc., which, preferably, is carried out between 9 o'clock and 9:30. The inventor believes that the possible reason is that it takes 10 hours for the mouse embryo to enter the S phase from fertilization. The actual time of mating and fertilization of mice can be defaulted, but it is generally considered that the mating time of mice is at 12:00 midnight. Therefore, the inventor believes that it is necessary to complete the process from embryo collection to electrotransfection before 10:00 a.m. the next day after the cage is closed. a series of operations. It should be noted that, according to the embodiment of the present invention, when using other means, such as injection method, the operation efficiency is usually low, and for more than 100 mouse embryos, it will be difficult to complete the entire transfection operation before 10 o’clock, and due to The duration of the operation is long, so it is difficult to ensure the uniformity and synchronization of the transfection process.
根据本发明的实施例,本发明还提出了一种对动物受精卵进行透明带弱化处理的方法,根据本发明的实施例,该方法包括:将处于S期以前的动物受精卵进行透明带弱化处理,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触4~10秒钟进行的。According to an embodiment of the present invention, the present invention also proposes a method for weakening the zona pellucida of an animal fertilized egg. According to an embodiment of the present invention, the method includes: weakening the zona pellucida on an animal fertilized egg before the S phase Treatment, the zona pellucida weakening treatment is carried out by contacting the fertilized egg cells of the animal with the table solution for 4-10 seconds.
本发明的发明人发现,对于动物胚胎,尤其是小鼠胚胎而言,进行透明带弱化处理,具体的是,将动物胚胎与台式液进行接触,该步骤的处理时间长短对于后续电转染的效率是至关重要的,如果接触的时间过短,则会造成透明带的弱化程度不足,降低基因编辑效率,如果时间过长,则会造成透明带弱化程度过高,会影响胚胎的存活。另外,发明人还 通过大量实验发现,通过8次脉冲完成电穿孔转染(在本文中“电穿孔转染”与“电转染”可以互换使用)能够有效地提高转染效率,并且维持胚胎的生存活力,尤其是实现多基因的高效率基因编辑。根据本发明的实施例,按照上述步骤处理的动物受精卵,其电转染效率明显得到提高。The inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection. Efficiency is crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, reducing the efficiency of gene editing. If the contact time is too long, the weakening of the zona pellucida will be too high, which will affect the survival of the embryo. In addition, the inventors have also found through a large number of experiments that completing electroporation transfection by 8 pulses (“electroporation transfection” and “electrotransfection” can be used interchangeably herein) can effectively improve the transfection efficiency and maintain The viability of embryos, especially the high-efficiency gene editing of multiple genes. According to the embodiments of the present invention, the electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
据本发明的实施例,步骤(1)中的弱化处理通过调整实验时间(早9:00-9:30开始做电转染实验),发现能得到纯合HDR突变体。图1显示了利用设计的针对小鼠胚胎Emx1基因电转染基因编辑后一代测序的结果,有套峰的地方就说明存在不同基因组序列,说明产生了基因编辑。测序结果如图2所示:红色矩形所示区域,碱基全部变为和ssODN相同的突变,并且无杂峰出现。图2显示了根据本发明的一个实施例纯合HDR突变体一代测序结果图,其中,灰色矩形所示区域,碱基全部变为和ssODN相同的突变,并且无杂峰出现,编辑的靶标基因为Emx1,sgRNA的向导序列为GAGTCTGAGCAGAAGAAGAA,对应的ssODN序列为GAGTCCGAGCAGAAGAAAAA。ssODN总长为130nt,其余碱基序列与小鼠基因组相同。According to the embodiment of the present invention, in the weakening treatment in step (1), it is found that a homozygous HDR mutant can be obtained by adjusting the experimental time (the electrotransfection experiment is started at 9:00-9:30 in the morning). Figure 1 shows the results of next-generation sequencing after gene editing by electrical transfection of the designed mouse embryo Emx1 gene. Where there are sets of peaks, it indicates that there are different genome sequences, indicating that gene editing has occurred. The sequencing results are shown in Figure 2: in the area shown by the red rectangle, all the bases have changed to the same mutation as ssODN, and no spurious peaks appear. Fig. 2 shows the results of first-generation sequencing of homozygous HDR mutants according to an embodiment of the present invention, wherein, in the region shown by the gray rectangle, all bases are changed to the same mutation as ssODN, and no spurious peaks appear, and the edited target base Because of Emx1, the guide sequence of sgRNA is GAGTCTGAGCAGAAGAAGAA, and the corresponding ssODN sequence is GAGTCCGAGCAGAAGAAAAA. The total length of ssODN is 130nt, and the rest of the base sequence is the same as that of the mouse genome.
为进一步验证电转染时间对纯合HDR突变体比例的影响,发明人将同一批小鼠中获取的胚胎,在几个不同时间段分别进行电转染实验。除电转染起止时间不同外,其余条件均相同。结果如下表所示。To further verify the effect of electrotransfection time on the proportion of homozygous HDR mutants, the inventors performed electrotransfection experiments on embryos obtained from the same batch of mice at several different time periods. Except for the different start and end times of electrotransfection, other conditions were the same. The results are shown in the table below.
表1:电转染时间对纯合HDR突变体比例的影响Table 1: Effect of electrotransfection time on the proportion of homozygous HDR mutants
Figure PCTCN2021122721-appb-000001
Figure PCTCN2021122721-appb-000001
可以看出,控制电转染时间对提高纯合HDR突变体的比例至关重要:早10时之前完成电转染,能得到纯合HDR突变体,且纯合HDR突变体所占比例较大;早10时之后开始电转染实验,几乎无法得到纯合HDR突变体。It can be seen that controlling the electrotransfection time is very important to increase the proportion of homozygous HDR mutants: if electrotransfection is completed before 10 o'clock, homozygous HDR mutants can be obtained, and the proportion of homozygous HDR mutants is relatively large. ; The electrotransfection experiment was started after 10 o'clock in the morning, and homozygous HDR mutants could hardly be obtained.
之后,发明人又在Zswim3、Tyr以及致死基因Foxg1测试了胚胎电转染,电转染均在十点之前完成,三个基因HDR比例如下表。结果发现,在十点之前结束胚胎电转染后Zswim3基因HDR比例为23%,Tyr基因HDR比例为16%,Foxg1基因HDR比例为30.8%,显著高于已发表文章中的5%。After that, the inventors tested embryo electrotransfection on Zswim3, Tyr and lethal gene Foxg1. Electrotransfection was completed before ten o'clock. The HDR ratios of the three genes are as follows. The results showed that the HDR ratio of Zswim3 gene was 23%, the HDR ratio of Tyr gene was 16%, and the HDR ratio of Foxg1 gene was 30.8%, which was significantly higher than the 5% in published articles.
表2:不同基因编辑位点纯合HDR突变体比例Table 2: Proportion of homozygous HDR mutants at different gene editing sites
Figure PCTCN2021122721-appb-000002
Figure PCTCN2021122721-appb-000002
需要说明的是,根据本发明的实施例,当采用其他手段,例如注射法时,通常操作效 率低,对于超过100个小鼠胚胎,将很难在10点之前结束全部转染操作,并且由于操作的持续时间久,所以很难能够保证转染处理的均一性和同步性。而对于电转染,则可以很轻松地通过一次或者几次电穿孔处理同事完成数百个小鼠胚胎(受精卵细胞)的转染。It should be noted that, according to the embodiment of the present invention, when using other means, such as injection method, the operation efficiency is usually low, and for more than 100 mouse embryos, it will be difficult to complete the entire transfection operation before 10 o’clock, and due to The duration of the operation is long, so it is difficult to ensure the uniformity and synchronization of the transfection process. For electrotransfection, hundreds of mouse embryos (fertilized egg cells) can easily be transfected with one or more electroporation treatments.
接下来,将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,其中,所述外源物质包括Cas9蛋白和sgRNA。Next, after mixing the exogenous material with the zona pellucida weakened animal fertilized eggs, electroporation transfection is performed, wherein the exogenous material includes Cas9 protein and sgRNA.
根据本发明的实施例,按照重量,所述外源物质中所述Cas9蛋白的用量是sgRNA用量的2~6倍。优选的,根据本发明的实施例,按照重量,所述外源物质中所述Cas9蛋白的用量是sgRNA用量的4倍。在利用Cas9技术进行基因编辑操作时,外源Cas9和sgRNA的提供形式和相应的使用量比例,对于转染效率和后续基因编辑的效率非常重要,本领域技术人员也是一直在探索。本发明的发明人发现当Cas9以蛋白的形式,sgRNA以RNA分子的形式提供,并且其用量重量比为2~6:1时,其基因编辑的效率将得到显著提高。According to an embodiment of the present invention, the amount of the Cas9 protein in the exogenous material is 2-6 times the amount of the sgRNA by weight. Preferably, according to the embodiment of the present invention, the amount of the Cas9 protein in the exogenous material is 4 times the amount of the sgRNA by weight. When using Cas9 technology for gene editing operations, the supply form and corresponding usage ratio of exogenous Cas9 and sgRNA are very important for the efficiency of transfection and subsequent gene editing, and those skilled in the art have been exploring. The inventors of the present invention found that when Cas9 is provided in the form of protein, and sgRNA is provided in the form of RNA molecules, and the dosage and weight ratio are 2-6:1, the gene editing efficiency will be significantly improved.
如前所述,本领域技术人员能够理解的是,为了促进HDR的发生,还可以进一步提供ssODNA分子。由此,根据本发明的实施例,所述外源物质包括:至少一种sgRNA,所述至少一种sgRNA分别针对不同的靶点;和至少一种与所述sgRNA对应的ssODN,所述ssODN的序列是基于所述靶点两侧预定长度而确定的。本领域技术人员可以根据目的基因选择相应的sgRNA和ssODNA,在此不在赘述。As mentioned above, those skilled in the art can understand that, in order to promote the occurrence of HDR, ssODNA molecules can be further provided. Thus, according to an embodiment of the present invention, the exogenous substance includes: at least one sgRNA, the at least one sgRNA targets different targets respectively; and at least one ssODN corresponding to the sgRNA, the ssODN The sequence of is determined based on a predetermined length flanking the target. Those skilled in the art can select the corresponding sgRNA and ssODNA according to the target gene, which will not be repeated here.
发明人发现,利用本发明的技术,能够实现同时进行多个基因的基因编辑。根据本发明的实施例,可以实施最多12个基因的同时编辑。根据本发明的实施例,所述外源物质包括2~12种sgRNA,例如2、3、4、5、6、7、8、9、10、11或12种sgRNA。根据本发明的实施例,基于10微升的电转染预混液,每种sgRNA的用量为1微克,所述Cas9蛋白的用量为所至少一种sgRNA总量的2~6倍,例如2、3、4、5或6。根据本发明的实施例,基于10微升的电转染预混液,所述Cas9蛋白的用量不超过20微克,优选不超过16微克。根据本发明的实施例,所述电穿孔转染处理采用5~10次脉冲,例如5、6、7、8、9或10次脉冲。根据本发明的实施例,所述电穿孔转染处理采用8次脉冲。由此,可以提高电转染进行多基因编辑的效率。发明人还通过大量实验发现,通过8次脉冲完成电穿孔转染(在本文中“电穿孔转染”与“电转染”可以互换使用)能够有效地提高转染效率,并且维持胚胎的生存活力,尤其是实现多基因的高效率基因编辑。The inventors found that, using the technology of the present invention, it is possible to perform gene editing of multiple genes at the same time. According to embodiments of the present invention, simultaneous editing of up to 12 genes can be performed. According to an embodiment of the present invention, the exogenous substance includes 2 to 12 sgRNAs, such as 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 sgRNAs. According to the embodiment of the present invention, based on 10 microliters of electrotransfection master mix, the dosage of each sgRNA is 1 microgram, and the dosage of the Cas9 protein is 2-6 times of the total amount of the at least one sgRNA, for example, 2, 3, 4, 5 or 6. According to the embodiment of the present invention, based on 10 microliters of electrotransfection master mix, the dosage of the Cas9 protein is not more than 20 micrograms, preferably not more than 16 micrograms. According to an embodiment of the present invention, the electroporation transfection treatment adopts 5-10 pulses, such as 5, 6, 7, 8, 9 or 10 pulses. According to an embodiment of the present invention, the electroporation transfection treatment uses 8 pulses. Thus, the efficiency of multi-gene editing by electrotransfection can be improved. The inventors also found through a large number of experiments that electroporation transfection (“electroporation transfection” and “electrotransfection” can be used interchangeably in this paper) through 8 pulses can effectively improve the transfection efficiency and maintain the embryo’s quality. Viability, especially to achieve high-efficiency gene editing of multiple genes.
根据本发明的实施例,在多基因编辑时,发明人采用台式液处理透明带5秒钟,并且保持每一种sgRNA的浓度为0.1ug/ul,而Cas9蛋白浓度改为总的sgRNA浓度的4倍;同时,发明人进一步优化了电转染参数,使用8次脉冲数。下表统计了发明人在同一个胚胎里同时电转染8个不同基因的sgRNA时,同时至少发生6个基因编辑的比例为100%,同时发生8个位点基因编辑的比例为33%,这表明优化后的胚胎电转染基因编辑技术可以实现高效率的多基因编辑。According to the embodiment of the present invention, during multi-gene editing, the inventors treated the zona pellucida with a benchtop solution for 5 seconds, and kept the concentration of each sgRNA at 0.1 ug/ul, while the Cas9 protein concentration was changed to 50% of the total sgRNA concentration. 4 times; at the same time, the inventors further optimized the electrotransfection parameters and used 8 pulses. The table below shows that when the inventors electrotransfected 8 sgRNAs of different genes at the same time in the same embryo, the proportion of at least 6 gene editing at the same time was 100%, and the proportion of gene editing at 8 loci at the same time was 33%. This indicates that the optimized embryo electrotransfection gene editing technology can achieve high-efficiency multi-gene editing.
表3:小鼠胚胎电转染多基因编辑效率Table 3: Efficiency of multiple gene editing by electrotransfection of mouse embryos
Figure PCTCN2021122721-appb-000003
Figure PCTCN2021122721-appb-000003
Figure PCTCN2021122721-appb-000004
Figure PCTCN2021122721-appb-000004
为了进一步确认多基因编辑效率,发明人增加了检测编辑效率的胚胎的数量。随机选取四个基因进行一代测序,统计多基因编辑效率。如下表所示,在统计了10枚胚胎编辑效率后,发明人发现,在同一个胚胎同时实现至少6个位点同时基因编辑的效率为80%,同时8个位点全部基因编辑的效率高于30%。To further confirm the efficiency of multiple gene editing, the inventors increased the number of embryos tested for editing efficiency. Four genes were randomly selected for next-generation sequencing, and the multi-gene editing efficiency was counted. As shown in the table below, after calculating the editing efficiency of 10 embryos, the inventors found that the efficiency of simultaneous gene editing at at least 6 sites in the same embryo is 80%, and the efficiency of gene editing at all 8 sites at the same time is high. at 30%.
表4:小鼠胚胎电转染多基因编辑效率Table 4: Efficiency of multiple gene editing by electrotransfection of mouse embryos
Figure PCTCN2021122721-appb-000005
Figure PCTCN2021122721-appb-000005
由此,根据本发明的实施例,本发明提出一种对动物受精卵进行电转染基因编辑的方法,其优势在于下列的至少之一:Thus, according to an embodiment of the present invention, the present invention proposes a method for electrotransfection gene editing of animal fertilized eggs, the advantages of which are at least one of the following:
(1)高通量,根据本发明的实施例,每次电转染实验可以同时编辑高达400枚胚胎;(1) High throughput, according to an embodiment of the present invention, up to 400 embryos can be edited simultaneously per electrotransfection experiment;
(2)高效率,根据本发明的实施例,单位点基因编辑效率高于90%;(2) High efficiency, according to the embodiment of the present invention, the gene editing efficiency per site is higher than 90%;
(3)高纯合HDR突变体比例,根据本发明的实施例,纯合HDR突变体比例高于16%;(3) high proportion of homozygous HDR mutants, according to the embodiment of the present invention, the proportion of homozygous HDR mutants is higher than 16%;
(4)可以同时实现多基因编辑,根据本发明的实施例,已对同时编辑8个基因进行效率统计,在同一个胚胎同时实现至少6个位点基因编辑的效率为80%以上,甚至可达100%,同时全部8个基因编辑的效率高于30%。在对单基因编辑效率优化时已经提到,发明人优化了对透明带的处理,优化了Cas9以及sgRNA的浓度。(4) Multiple gene editing can be realized at the same time. According to the embodiment of the present invention, the efficiency statistics of the simultaneous editing of 8 genes have been carried out. up to 100%, while all 8 gene editing efficiencies were higher than 30%. As mentioned in the optimization of single-gene editing efficiency, the inventors optimized the treatment of the zona pellucida, and optimized the concentration of Cas9 and sgRNA.
(5)高HDR突变小鼠获取效率,根据本发明的实施例,单位点基因编辑,HDR突变小鼠获取效率高于55.6%,纯合HDR突变体小鼠获取效率高于30%。其中,单缺失致死基因的突变体小鼠获取效率高达100%。(5) High acquisition efficiency of HDR mutant mice, according to the embodiment of the present invention, single site gene editing, the acquisition efficiency of HDR mutant mice is higher than 55.6%, and the acquisition efficiency of homozygous HDR mutant mice is higher than 30%. Among them, the efficiency of obtaining mutant mice with single deletion lethal gene is as high as 100%.
突变受精卵细胞的构建方法及其应用Construction method of mutant fertilized egg cell and its application
在本发明的第二方面,本发明提出了一种构建突变受精卵细胞的方法。根据本发明的实施例,该方法包括:(1)对处于S期以前的动物受精卵进行透明带弱化处理;(2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,其中,所述外源物质包括Cas9蛋白和至少一种sgRNA,基于重量,所述Cas9蛋白与所述至少一种 sgRNA重量的比例为2~6:1,优选4:1。In a second aspect of the present invention, the present invention provides a method for constructing mutant fertilized egg cells. According to an embodiment of the present invention, the method includes: (1) performing a zona weakening treatment on the animal fertilized eggs before the S phase; (2) mixing exogenous substances with the zona pellucida weakened animal fertilized eggs, and performing Electroporation transfection treatment, wherein the exogenous material includes Cas9 protein and at least one sgRNA, and the weight ratio of the Cas9 protein to the at least one sgRNA is 2 to 6:1, preferably 4:1 based on weight .
如前所述,根据本发明的实施例,采用S期以前的动物受精卵细胞时,并且以Cas9蛋白和sgRNA混合物的方式进行电转染,能够有效地提高基因编辑的效率,从而可以进一步提高构建突变受精卵细胞的效率。前面对于相关步骤的特征和描述,同样适用该方法,在此不再赘述。如前所,通过该方法能够有效地构建基因突变的突变受精卵细胞,例如基因敲除或者基因同源重组修复(HDR)的突变受精卵细胞。As mentioned above, according to the embodiments of the present invention, when the fertilized egg cells of animals before S phase are used, and electrotransfection is carried out in the form of a mixture of Cas9 protein and sgRNA, the efficiency of gene editing can be effectively improved, so that the construction can be further improved. Efficiency of mutant fertilized egg cells. The foregoing features and descriptions of the relevant steps are also applicable to this method, and are not repeated here. As mentioned above, the method can efficiently construct mutant fertilized egg cells with gene mutation, such as gene knockout or gene homologous recombination repair (HDR) mutant fertilized egg cells.
本领域技术人员能够理解的是通过采用上述方法获得的受精卵细胞,可以通过常规的生物学方法,例如测序等方法进行验证是否在特定位置发生了相应的突变。Those skilled in the art can understand that the fertilized egg cells obtained by adopting the above method can be verified by conventional biological methods, such as sequencing and other methods, to verify whether a corresponding mutation occurs at a specific position.
如前所述,本领域技术人员能够理解,可以根据需要添加额外的外源物质,例如,对于基因同源重组修复(HDR)的突变受精卵细胞的构建,需要添加ssODN,并且以外地发现通过本发明的方法获得纯合HDR受精卵细胞的比例得到显著提高,可以高达30%,比现有技术提高了近10倍。As mentioned above, those skilled in the art can understand that additional exogenous substances can be added as needed, for example, for the construction of mutant fertilized egg cells with homologous recombination repair (HDR), it is necessary to add ssODN, and it is found outside the The proportion of homozygous HDR fertilized egg cells obtained by the method of the invention is significantly increased, which can be as high as 30%, which is nearly 10 times higher than that of the prior art.
由此,在本发明的第三方面,本发明提出了一种构建突变受精卵细胞的方法,所述突变受精卵细胞为纯合HDR受精卵细胞,根据本发明的实施例,所述方法包括:(1)对处于S期以前的动物受精卵进行透明带弱化处理;(2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,以便获得经过转染的受精卵细胞,其中,所述外源物质包括Cas9蛋白、至少一种sgRNA和至少一种与所述sgRNA对应的ssODN,其中,基于重量,所述Cas9蛋白与所述至少一种sgRNA重量的比例为2~6:1;和(3)从所述经过转染的受精卵细胞中选择所述纯合HDR受精卵细胞。根据本发明的实施例,所述Cas9蛋白与所述至少一种sgRNA重量的比例为4:1。另外,根据本发明的实施例,所述外源物质包括:1~2种sgRNA;以及1~2种与所述sgRNA对应的ssODN。根据本发明的实施例,通过采用该方法能够获得高比例的纯合HDR受精卵细胞,甚至可以获得双基因的纯合HDR。如前所述,根据本发明的实施例,采用S期以前的动物受精卵细胞时,并且以Cas9蛋白和sgRNA混合物的方式进行电转染,能够有效地提高基因编辑的效率,从而可以进一步提高构建突变受精卵细胞的效率。另外意外地发现,针对一种sgRNA纯合HDR受精卵细胞的比例能够达到20%。Thus, in the third aspect of the present invention, the present invention proposes a method for constructing a mutant fertilized egg cell, the mutant fertilized egg cell is a homozygous HDR fertilized egg cell, according to an embodiment of the present invention, the method comprises: (1 ) to weaken the zona pellucida of animal fertilized eggs before the S phase; (2) after mixing the exogenous material with the fertilized eggs of animals with weakened zona pellucida, carry out electroporation transfection treatment to obtain transfected fertilized eggs Egg cell, wherein, the foreign material comprises Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, based on weight, the ratio of the Cas9 protein to the weight of the at least one sgRNA is 2 -6:1; and (3) selecting the homozygous HDR zygote cells from the transfected zygote cells. According to an embodiment of the present invention, the weight ratio of the Cas9 protein to the at least one sgRNA is 4:1. In addition, according to an embodiment of the present invention, the exogenous substance includes: 1-2 kinds of sgRNAs; and 1-2 kinds of ssODNs corresponding to the sgRNAs. According to the embodiment of the present invention, by adopting this method, a high proportion of homozygous HDR fertilized egg cells can be obtained, and even homozygous HDR of two genes can be obtained. As mentioned above, according to the embodiments of the present invention, when the fertilized egg cells of animals before S phase are used, and electrotransfection is carried out in the form of a mixture of Cas9 protein and sgRNA, the efficiency of gene editing can be effectively improved, so that the construction can be further improved. Efficiency of mutant fertilized egg cells. It was also unexpectedly found that the proportion of HDR fertilized egg cells homozygous for one sgRNA could reach 20%.
在本发明的第四方面,本发明提出了一种构建突变受精卵细胞的方法,所述突变受精卵细胞为致死基因单缺失受精卵细胞。根据本发明的实施例,所述方法包括(1)对处于S期以前的动物受精卵进行透明带弱化处理;(2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,以便获得经过转染的受精卵细胞,其中,所述外源物质包括Cas9蛋白、至少一种sgRNA和至少一种与所述sgRNA对应的ssODN,其中,基于重量,所述Cas9蛋白与所述至少一种sgRNA重量的比例为2~6:1;和(3)从所述经过转染的受精卵细胞中选择所述致死基因单缺失受精卵细胞,其中,所述至少一种sgRNA和所述ssODN是基于致死基因确定的。In the fourth aspect of the present invention, the present invention provides a method for constructing a mutant fertilized egg cell, wherein the mutant fertilized egg cell is a lethal gene single deletion fertilized egg cell. According to an embodiment of the present invention, the method includes (1) weakening the zona pellucida on the fertilized eggs of animals before the S phase; (2) mixing the exogenous material with the fertilized eggs of animals subjected to the weakening zona pellucida treatment, and then performing Electroporation transfection treatment to obtain transfected fertilized egg cells, wherein the exogenous material comprises Cas9 protein, at least one sgRNA and at least one ssODN corresponding to the sgRNA, wherein, on a weight basis, the Cas9 The weight ratio of protein to the at least one sgRNA is 2-6:1; and (3) selecting the lethal gene single-deletion fertilized egg cells from the transfected fertilized egg cells, wherein the at least one sgRNA and the ssODN was determined based on lethal genes.
如前所述,根据本发明的实施例,采用S期以前的动物受精卵细胞时,并且以Cas9蛋白和sgRNA混合物的方式进行电转染,能够有效地提高基因编辑的效率,从而可以进一步 提高构建突变受精卵细胞的效率。另外根据本发明的实施例,意外地发现,在所得到的经过转染的受精卵细胞中,存在单缺失的致死基因比例高达54%,在这些受精卵细胞中,发生HDR的位置实际上是被保护起来未被敲除或者功能丧失。从而,能够有效地获得具有单缺失致死基因的受精卵细胞,进一步,可以在受精卵细胞存活的状态下研究该致死基因的生物活性。As mentioned above, according to the embodiments of the present invention, when the fertilized egg cells of animals before S phase are used, and electrotransfection is carried out in the form of a mixture of Cas9 protein and sgRNA, the efficiency of gene editing can be effectively improved, so that the construction can be further improved. Efficiency of mutant fertilized egg cells. In addition, according to the embodiment of the present invention, it was unexpectedly found that in the obtained transfected fertilized egg cells, the proportion of lethal genes with single deletion was as high as 54%, and in these fertilized egg cells, the location where HDR occurred was actually protected Not knocked out or loss of function. Thus, a fertilized egg cell having a single deletion lethal gene can be efficiently obtained, and further, the biological activity of the lethal gene can be studied while the fertilized egg cell is alive.
在获得了受精卵细胞后,本领域技术人员可以通过常规手段获得突变动物,这些动物携带相应的受精卵细胞中的突变基因。After the fertilized egg cells are obtained, those skilled in the art can obtain mutant animals by conventional means, these animals carry the mutant genes in the corresponding fertilized egg cells.
由此,在本发明的第五方面,本发明提出了一种构建突变动物的方法,根据本发明的实施例,该方法包括:(a)按照前面所述的方法,构建突变受精卵细胞;和(b)培育所述突变受精卵细胞,以便获得所述突变动物。Thus, in the fifth aspect of the present invention, the present invention provides a method for constructing a mutant animal, according to an embodiment of the present invention, the method comprises: (a) constructing a mutant fertilized egg cell according to the aforementioned method; and (b) growing the mutant fertilized egg cells to obtain the mutant animal.
如前所述,在前面获得纯合HDR受精卵细胞或者致死基因单缺失的受精卵细胞基础上,可以进一步获得携带这些基因突变的动物。由此,这些动物可以用于进行基因研究或者药物筛选。As mentioned above, on the basis of obtaining homozygous HDR fertilized oocytes or fertilized oocytes with single deletion of lethal gene, animals carrying these gene mutations can be further obtained. Thus, these animals can be used for genetic studies or drug screening.
在本发明的第六方面,本发明提出了一种构建动物模型的方法,根据本发明的实施例,该方法包括:(i)基于预定疾病类型,确定与疾病关联基因相关的sgRNA以及任选的ssODN;(ii)利用所sgRNA和Cas9蛋白,按照前面所述的方法构建动物模型。In the sixth aspect of the present invention, the present invention proposes a method for constructing an animal model. According to an embodiment of the present invention, the method includes: (i) based on a predetermined disease type, determining sgRNAs associated with disease-related genes and optionally ssODN; (ii) using the sgRNA and Cas9 protein to construct an animal model according to the method described above.
由此,根据本发明的实施例,可以针对已知的疾病关联基因进行构建相应的突变动物,从而可以作为用于该疾病研究或者药物筛选的动物模型。这些相应的关联基因可以包括但不限于:DHODH、RBM10、SETBP1、GPSM2、FLVCR2、MLL2、WDR35、WDR62、PIGV、SDCCAG8、MASP1、ACAD9、ANGPTL3、FADD、TGM6、CEP152、DHDDS、TECR、ARHGAP31、AARS2、IMPAD1、BANF1、KIF1A、FAM20A、AP4S1、AP4B1、AP4E1、ZBTB24、NCSTN、VPS35、CCDC8、AKT1、PSMC3IP/HOP2、ADK、KAT6B、MEGF10、WDR19、PRRT2、POLR3A、POLR3B、IDH1、CSF1R、GATAD1、EZH2、KIF22、KIF22、PLA2G5、PRRT2、DLX5、EZH2、KLHL3,CUL3、NDUFB3,AGK、RIPK4、SLC6A3、BRAT1、CRADD、TUBGCP6、FLVCR1、SNIP1、HARS、SLCO2A1、THRA、ACTB,ACTG1、AGK、DDOST、EFTUD2、GPR179、KIF11、RAD51、RTN2、SRCAP、ACO2、ARID1B、CTC1、DNAJB6、KLHL3、MAFB、MCM4、SMARCB1、SMARCA4、SMARCA2、SMARCE1、ARID1A、ARID1B、XRCC2、TRPV3、C5orf42、CHST8、CIZ1、DST、EXOSC3、GUCY2C、LZTFL1、MFF、FARS2、NDUFS8、MTFMT、NDUFB3、PDE4D、PDE4D、PIGL、ROGDI、ADCY5、CEP135、CYP4V2、DNAJC6、DYNC1H1、KIAA1530(UVSSA)、NNT、PLCB4、GNAI3、SF3B4、SRP72、ABCC9、AGK、AKT3、PIK3R2and PIK3CA、MTO1、NSUN2、SERAC1、CARD14、CD27、FAN1、LARS、PIGO、RAB33B、TGFB2、CCDC78、FAM38A、IFITM5、IFITM5、LRBA、MLL、PFN1、POC1A、SLCO2A1、TCTN3、TFG、COL14A1、GRM1、GTDC2、NMNAT1、NMNAT1、NMNAT1、PMCA3、SLC52A2and SLC52A3、SORL1、TSPEAR、AAGAB、ABCD4、ALG13、DPAGT1、PGM1、ATP1A3、CLIC2、FARS2、HEATR2、HYDIN、PLCG2、RMND1、ROGDI、SLCO2A1、TMEM231、TMEM38B、CD59、CYP26C1、 DYNC1H1、HOXC13、IGSF1、KCNT1、KCNT1、NIN、PNPT1、SKI、SLC29A3、ZNF141、ACTG2、AGK、ANO3、CCDC114、DGAT1、DGKE、DHTKD1、EPS8L3、EXPH5、GNAL、HERC2、INPPL1、KCND3、KCND3、LRIT3、PACS1、PDGFRB、PLA2G4A、SLC5A7、TECPR2、UBE3B、UQCRC2、WDR45、SLC26A3、HSD17B4、VCP、BAG3、NOTCH2、RMRP、PTH1R、MCT8、DNAJC5、SLC29A3、SMAD4、TK2、KAT6B、KAT6B、PIGA、DYNC1H1、LOXHD1、PLDN、CAV1、MPL、ABCC9、DNMT1、KIF7、RSPH9、GPSM2、GRN、PIK3CA、PIK3CA、AKT3、MTOR、TCF4、TTN、ASAH1、DPAGT1、GATA1、REEP1、FUS、HDAC8、ATP1A3、ATP1A3、MVK、MYBPC1、KCNJ13、LHCGR、AFG3L2、ELOVL4、SMAD4、HSD17B4、AIFM1、C12orf65、RP1L1、SNAP29、ST3GAL3、HPSE2、AP4B1、CYP24A1、SPR、ALG8、C10orf2(Twinkle)、GCDH、OFD1、FA2H、SPG11、VPS13A、BOLA3、C19orf12、SLC40A1、ATP13A2、CD45、KCNJ11、ASPM、GLB1、IL-10R1、KCTD7、PKHD1、SACS、CACNA1S、CASK、EFHC1、KCNQ2、CAPN3、CLN6、DES、GM3、MPV17、UPF3B、APOE、RYR1、DNAJC5、AIFM1、TREM2、C5orf42、EVC2、SEC8、RBP4、SLC52A2、SUCLA2、WDR35、CSF1R、CYP1B1、MYOC、LTBP2、DNAJC6、DPAGT1、DPAGT1、GBE1、KCTD7、RP1、STAT1、USH1C、LMNA、TGM6、TRAPPC9、OFD1、PRKCG、TRPV4、DFNA9、ABCA4、RDS/PRPH2、ELOVL and CRB1、CUL7、SNRNP200、SOD1、VCP、CDHR1、DDX11、PIK3CA、SLX4/FANCP、UBQLN2、BSCL2、FGD1、GATA4、KIF7、VCP、CCDC88C、DES and FLNC、ABCD4、GARS。Thus, according to the embodiments of the present invention, corresponding mutant animals can be constructed for known disease-related genes, so as to be used as animal models for disease research or drug screening. These corresponding associated genes may include, but are not limited to: DHODH, RBM10, SETBP1, GPSM2, FLVCR2, MLL2, WDR35, WDR62, PIGV, SDCCAG8, MASP1, ACAD9, ANGPTL3, FADD, TGM6, CEP152, DHDDS, TECR, ARHGAP31, AARS2 , IMPAD1, BANF1, KIF1A, FAM20A, AP4S1, AP4B1, AP4E1, ZBTB24, NCSTN, VPS35, CCDC8, AKT1, PSMC3IP/HOP2, ADK, KAT6B, MEGF10, WDR19, PRRT2, POLR3A, POLR3B, IDH1, CSF1R, GATAD1, EZH2 , KIF22, KIF22, PLA2G5, PRRT2, DLX5, EZH2, KLHL3, CUL3, NDUFB3, AGK, RIPK4, SLC6A3, BRAT1, CRADD, TUBGCP6, FLVCR1, SNIP1, HARS, SLCO2A1, THRA, ACTB, ACTG1, AGK, DDOST, EFTUD2 , GPR179, KIF11, RAD51, RTN2, SRCAP, ACO2, ARID1B, CTC1, DNAJB6, KLHL3, MAFB, MCM4, SMARCB1, SMARCA4, SMARCA2, SMARCE1, ARID1A, ARID1B, XRCC2, TRPV3, C5orf42, CHST8, CIZ1, DST, EXOSC3 , GUCY2C, LZTFL1, MFF, FARS2, NDUFS8, MTFMT, NDUFB3, PDE4D, PDE4D, PIGL, ROGDI, ADCY5, CEP135, CYP4V2, DNAJC6, DYNC1H1, KIAA1530(UVSSA), NNT, PLCB4, GNAI3, SF3B4, SRP72, ABCC9, AGK, AKT3, PIK3R2and PIK3CA, MTO1, NSUN2, SERAC1, CARD14, CD27, FAN1, LARS, PIGO, RAB33B, TGFB2, CCDC78, FAM38A, IFITM5, IFITM5, LRBA, MLL, PFN1, POC1A, SLCO2A1, TCTN3, TFG, COL14A1 , GRM1, GTDC2, NMNAT1, NMNAT1, NMNAT1, PMCA3, SLC52A2and SLC52A3, SORL1, TSPEAR, AAGAB, ABCD4, ALG13 , DPAGT1, PGM1, ATP1A3, CLIC2, FARS2, HEATR2, HYDIN, PLCG2, RMND1, ROGDI, SLCO2A1, TMEM231, TMEM38B, CD59, CYP26C1, DYNC1H1, HOXC13, IGSF1, KCNT1, KCNT1, NIN, PNPT1, SKI, SLC29A3, ZNF141 , ACTG2, AGK, ANO3, CCDC114, DGAT1, DGKE, DHTKD1, EPS8L3, EXPH5, GNAL, HERC2, INPPL1, KCND3, KCND3, LRIT3, PACS1, PDGFRB, PLA2G4A, SLC5A7, TECPR2, UBE3B, UQCRC2, WDR45, SLC26A3, HSD17B4 , VCP, BAG3, NOTCH2, RMRP, PTH1R, MCT8, DNAJC5, SLC29A3, SMAD4, TK2, KAT6B, KAT6B, PIGA, DYNC1H1, LOXHD1, PLDN, CAV1, MPL, ABCC9, DNMT1, KIF7, RSPH9, GPSM2, GRN, PIK3CA , PIK3CA, AKT3, MTOR, TCF4, TTN, ASAH1, DPAGT1, GATA1, REEP1, FUS, HDAC8, ATP1A3, ATP1A3, MVK, MYBPC1, KCNJ13, LHCGR, AFG3L2, ELOVL4, SMAD4, HSD17B4, AIFM1, C12orf65, RP1L1, SNAP29 , ST3GAL3, HPSE2, AP4B1, CYP24A1, SPR, ALG8, C10orf2(Twinkle), GCDH, OFD1, FA2H, SPG11, VPS13A, BOLA3, C19orf12, SLC40A1, ATP13A2, CD45, KCNJ11, ASPM, GLB1, IL-10R1, KCTD7, PKHD1, SACS, CACNA1S, CASK, EFHC1, KCNQ2, CAPN3, CLN6, DES, GM3, MPV17, UPF3B, APOE, RYR1, DNAJC5, AIFM1, TREM2, C5orf42, EVC2, SEC8, RBP4, SLC52A2, SUCLA2, WDR35, CSF1R, CYP1B1, MYOC, LTBP2, DNAJC6, DPAGT1, DPAGT1, GBE1, KCTD7, RP1, STAT1, USH1C, LMNA, TGM6, TRAPPC9, OFD1, PRKCG, TRPV4, DFNA9, ABCA4, RDS/PRPH2, ELOVL and CRB1, CUL7, SNRNP200, SOD1, VCP, CDHR1, DDX11, PIK3CA, SLX4/FANCP, UBQLN2, BSCL2, FGD1, GATA4, KIF7, VCP, CCDC88C, DES and FLNC, ABCD4, GARS.
本发明构建的突变受精卵细胞,在体外正常培养到二细胞时期后,可回植到母鼠体内,经历胚胎的正常发育周期,可以获得相应的突变小鼠。上文所提到的,通过本发明构建的Emx1、Zswim3、Tyr以及致死基因Foxg1突变受精卵细胞,均可在二细胞时期回植到母鼠体内,用于产生突变小鼠模型。回植突变受精卵细胞得到的基因突变小鼠的基因型鉴定结果如下表。值得关注的是,致死基因Foxg1突变的受精卵细胞是无法正常发育成小鼠的,所以单缺失致死基因的突变体小鼠能够帮助我们研究致死基因在小鼠中的生物学功能,利用本发明获得的Foxg1突变受精卵,回植出生后的小鼠均为单缺失致死基因的突变体,效率高达100%。因此,本发明能够有效地构建具有单缺失致死基因的小鼠动物模型。The mutant fertilized egg cells constructed by the present invention can be replanted into the female mouse after normal culture in vitro to the two-cell stage, and the corresponding mutant mice can be obtained through the normal development cycle of the embryo. As mentioned above, the mutant fertilized egg cells of Emx1, Zswim3, Tyr and lethal gene Foxg1 constructed by the present invention can be replanted into female mice at the two-cell stage to generate mutant mouse models. The genotype identification results of gene mutant mice obtained by replanting mutant fertilized egg cells are as follows. It is worth noting that the fertilized egg cells mutated by the lethal gene Foxg1 cannot normally develop into mice, so the mutant mice with single deletion of the lethal gene can help us to study the biological function of the lethal gene in mice. Foxg1 mutant fertilized eggs, replanted into postnatal mice are all mutants with single deletion lethal gene, and the efficiency is as high as 100%. Therefore, the present invention can effectively construct a mouse animal model with a single deletion lethal gene.
表5:突变受精卵细胞回植后出生小鼠突变体类型Table 5: Types of Mutant Mutants Born After Mutant Fertilized Oocyte Reimplantation
Figure PCTCN2021122721-appb-000006
Figure PCTCN2021122721-appb-000006
注:KI突变体为含有HDR突变类型的突变体。Note: KI mutants are mutants containing HDR mutation types.
根据本发明的实施例,该构建动物模型的方法具有高HDR突变小鼠获取效率的优点。根据本发明的实施例,单位点基因编辑中,HDR突变小鼠获取效率高于55.6%,纯合HDR 突变体小鼠获取效率高于30%;其中,单缺失致死基因的突变体小鼠获取效率高达100%。According to the embodiment of the present invention, the method for constructing an animal model has the advantage of high acquisition efficiency of HDR mutant mice. According to the embodiments of the present invention, in single-site gene editing, the acquisition efficiency of HDR mutant mice is higher than 55.6%, and the acquisition efficiency of homozygous HDR mutant mice is higher than 30%; wherein, the mutant mice with single deletion lethal gene are obtained Efficiency up to 100%.
在本发明的第七方面,本发明提出按照前面所述的方法构建的突变动物或动物模型在筛选药物中的用途。In the seventh aspect of the present invention, the present invention proposes the use of the mutant animals or animal models constructed according to the aforementioned methods in screening drugs.
本领域技术人员可以采用本领域中公知的技术进行药物筛选,在此不再赘述。Those skilled in the art can use techniques known in the art for drug screening, which will not be repeated here.
在本发明的第八方面,本发明提出了一种对动物受精卵进行透明带弱化处理的方法,根据本发明的实施例,该方法包括:将处于S期以前的动物受精卵进行透明带弱化处理,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触4~10秒钟进行的。In the eighth aspect of the present invention, the present invention proposes a method for weakening the zona pellucida for animal fertilized eggs. According to an embodiment of the present invention, the method includes: weakening the zona pellucida for the animal fertilized eggs before S phase Treatment, the zona pellucida weakening treatment is carried out by contacting the fertilized egg cells of the animal with the table solution for 4-10 seconds.
本发明的发明人发现,对于动物胚胎,尤其是小鼠胚胎而言,进行透明带弱化处理,具体的是,将动物胚胎与台式液进行接触,该步骤的处理时间长短对于后续电转染的效率以及得到纯合HDR突变体的效率是至关重要的,如果接触的时间过短,则会造成透明带的弱化程度不足,如果时间过长,则会造成透明带弱化程度过高,会影响胚胎的存活。另外,发明人还通过大量实验发现,通过8次脉冲完成电穿孔转染(在本文中“电穿孔转染”与“电转染”可以互换使用)能够有效地提高转染效率,并且维持胚胎的生存活力,尤其是实现多基因的高效率基因编辑。根据本发明的实施例,按照上述步骤处理的动物受精卵,其电转染效率明显得到提高。The inventors of the present invention found that, for animal embryos, especially mouse embryos, the zona pellucida weakening treatment, specifically, contacting the animal embryos with the benchtop solution, the processing time of this step is very important for the subsequent electrotransfection. The efficiency and the efficiency of obtaining homozygous HDR mutants are crucial. If the contact time is too short, the weakening of the zona pellucida will be insufficient, and if the time is too long, the weakening of the zona pellucida will be too high, which will affect the Embryo survival. In addition, the inventors have also found through a large number of experiments that completing electroporation transfection by 8 pulses (“electroporation transfection” and “electrotransfection” can be used interchangeably herein) can effectively improve the transfection efficiency and maintain The viability of embryos, especially the high-efficiency gene editing of multiple genes. According to the embodiments of the present invention, the electrotransfection efficiency of the animal fertilized eggs processed according to the above steps is obviously improved.
需要说明的是,在不同方面所描述的方案、特征和优点,除非特别说明,是可以互相适用的,在此不再赘述。It should be noted that the solutions, features and advantages described in different aspects are mutually applicable unless otherwise specified, and are not repeated here.
下面通过具体的实施例对本发明进行描述,除非特别说明,在具体的实施例中所采用的处理手段和试剂均为常规的或者市售可得的。The present invention will be described below through specific examples, unless otherwise specified, the treatment means and reagents used in the specific examples are conventional or commercially available.
实施例1Example 1
1、体外制备基因编辑体系1. In vitro preparation of gene editing system
Cas9蛋白的纯化Purification of Cas9 protein
表达Cas9蛋白所需的质粒为pET28a(-)his(+)HA-NLS-SpCas9。The plasmid required to express Cas9 protein is pET28a(-)his(+)HA-NLS-SpCas9.
第一天:质粒转化Day 1: Plasmid Transformation
根据感受态细胞提供的实验步骤将含有T7启动子的PET28a-spCas9质粒转化进Rosetta DE3。简而言之,将约200ng的质粒DNA添加到50μl刚解冻的感受态细胞中,并在冰上孵育30分钟。通过在42℃下孵育60s来热激细胞,然后将细胞在冰上放置3分钟。向细胞中加入500μlLB(Luria Broth)培养基,并在振荡培养箱中于37℃培养1h。然后将感受态细胞均匀涂布到含有50μg/ml卡那霉素的LB琼脂培养板上,在37℃下过夜孵育。The PET28a-spCas9 plasmid containing the T7 promoter was transformed into Rosetta DE3 according to the experimental procedure provided by competent cells. Briefly, approximately 200 ng of plasmid DNA was added to 50 μl of freshly thawed competent cells and incubated on ice for 30 min. Heat shock cells by incubating at 42 °C for 60 s, then place cells on ice for 3 min. 500 μl of LB (Luria Broth) medium was added to the cells and incubated at 37° C. for 1 h in a shaking incubator. Competent cells were then spread evenly onto LB agar plates containing 50 μg/ml kanamycin and incubated overnight at 37°C.
第二天:细菌扩大培养和蛋白诱导表达Day 2: Bacterial expansion and protein-induced expression
从琼脂平板上挑一个菌落,接种10ml含50μg/ml卡那霉素的LB培养基。在震荡培养箱(250rpm)中于37℃孵育预培养过夜。在2L带培养瓶中,将10ml的预培养物接种到含有50μg/ml卡那霉素的1L预热LB培养基,在摇动培养箱(220rpm)中于37℃扩大培养细菌,同时通过测量600nm(OD 600)的光密度监测细胞生长。当OD升高至至0.6~0.8,将温度降至16℃。通过向每个烧瓶中加入2ml 100mM异丙基-β-D-1-硫代半乳 糖吡喃糖苷(IPTG终浓度200μM)来诱导蛋白质表达。继续在16℃震荡培养过夜,持续12-16小时。Pick a colony from the agar plate and inoculate 10 ml of LB medium containing 50 μg/ml kanamycin. The pre-culture was incubated overnight at 37°C in a shaking incubator (250 rpm). Inoculate 10 ml of pre-culture into 1 L of pre-warmed LB medium containing 50 μg/ml kanamycin in a 2 L tape flask, expand the bacteria at 37 °C in a shaking incubator (220 rpm) while measuring 600 nm by (OD 600 ) to monitor cell growth. When the OD increased to 0.6-0.8, the temperature was lowered to 16°C. Protein expression was induced by adding 2 ml of 100 mM isopropyl-[beta]-D-1-thiogalactopyranoside (IPTG final concentration 200 [mu]M) to each flask. Continue to incubate overnight at 16°C with shaking for 12-16 hours.
第三天:Cas9蛋白Ni柱亲和纯化Day 3: Ni-column affinity purification of Cas9 protein
在含有摆桶式转子的离心机中4000rpm离心10分钟收获细胞。倒出上清液,每升菌液收集的细菌约用40ml预冷的裂解缓冲液(20mM Tris-Cl,pH 8.0,500mM NaCl 10%甘油,1mM TCEP,1mM苯基甲基磺酰氟PMSF)重悬细胞沉淀。重悬的细胞沉淀既可以直接用于进一步纯化,也可以在液氮中速冻并在-80℃下保存几个月,而不会损失Cas9的酶活性。Cells were harvested by centrifugation at 4000 rpm for 10 minutes in a centrifuge containing a swinging bucket rotor. Pour off the supernatant and use about 40 ml of pre-cooled lysis buffer (20 mM Tris-Cl, pH 8.0, 500 mM NaCl, 10% glycerol, 1 mM TCEP, 1 mM phenylmethylsulfonyl fluoride PMSF) for each liter of bacteria collected. Resuspend the cell pellet. The resuspended cell pellet can either be used directly for further purification or can be snap-frozen in liquid nitrogen and stored at -80°C for several months without loss of Cas9 enzymatic activity.
用超声波破碎重悬的细菌至菌液变得澄清透明,超声波破碎程序(超声1s,停止3s,50%功率,总时长10min)。之后将细菌裂解液转移到50mlBeckman离心管中,使用25.5号转子15000rpm在4℃离心30min分离上清和沉淀。将含有Cas9蛋白的上清液转移到镍柱上4℃孵育1小时。孵育前镍柱柱材(2ml)依次用20ml双蒸水和10ml细菌裂解缓冲液冲洗平衡。孵育结束后收集镍柱流穿液,用50ml的清洗液(20mM Tris-Cl,pH 8.0,250mM NaCl,20mM imidazole,pH 8.0,5%glycerol)清洗镍柱,直到镍柱流出的清洗液不再使Bradford染液变色。之后用50ml的洗脱缓冲液(20mM Tris-Cl,pH 8.0,250mM NaCl,250mM imidazole,pH 8.0,10%glycerol,1mM TCEP)洗脱镍柱上的蛋白,直到镍柱流出的洗脱缓冲液不再使Bradford染液变色。将洗脱下来的蛋白溶液转移到孔径为100KDa的透析膜中,并将装有Cas9蛋白的透析膜放入1L透析液(20mM HEPES-KOH,pH 7.0,125mM KCl,10%(v/v)glycerol,1mM dithiothreitol(DTT))中4℃透析过夜(透析3小时后更换新的透析液)。The resuspended bacteria were disrupted with ultrasonic waves until the bacterial liquid became clear and transparent, and the ultrasonic disruption procedure was performed (ultrasonic for 1 s, stop for 3 s, 50% power, and the total duration was 10 min). Afterwards, the bacterial lysate was transferred to a 50ml Beckman centrifuge tube, and the supernatant and the pellet were separated by centrifugation at 4°C for 30min using a No. 25.5 rotor at 15000rpm. The supernatant containing Cas9 protein was transferred to a nickel column and incubated at 4°C for 1 hour. Before incubation, nickel column material (2 ml) was washed and equilibrated with 20 ml of double-distilled water and 10 ml of bacterial lysis buffer in turn. After the incubation, collect the nickel column flow-through, and wash the nickel column with 50 ml of washing solution (20 mM Tris-Cl, pH 8.0, 250 mM NaCl, 20 mM imidazole, pH 8.0, 5% glycerol) until the washing solution flowing out of the nickel column is no longer Discolors Bradford stain. Afterwards, the protein on the nickel column was eluted with 50 ml of elution buffer (20 mM Tris-Cl, pH 8.0, 250 mM NaCl, 250 mM imidazole, pH 8.0, 10% glycerol, 1 mM TCEP) until the elution buffer eluted from the nickel column. No longer discolors Bradford stain. The eluted protein solution was transferred to a dialysis membrane with a pore size of 100KDa, and the dialysis membrane loaded with Cas9 protein was placed in 1 L of dialysate (20mM HEPES-KOH, pH 7.0, 125mM KCl, 10% (v/v) glycerol, 1 mM dithiothreitol (DTT)) overnight at 4°C (replace with new dialysate after 3 hours of dialysis).
第四天:阳离子交换柱和分子筛Day 4: Cation Exchange Columns and Molecular Sieves
从透析膜中回收透析样品。通常,透析后会出现明显的沉淀。在4℃下以4000rpm离心5分钟以除去沉淀物。用阳离子交换(IEX)缓冲液A(20mM HEPES-KOH,pH 7.0,100mM KCl,10%甘油)和缓冲液B(20mM HEPES-KOH,pH 7.0,1M KCl,10%甘油)交替洗涤5ml HiTrap SP HP色谱柱(GE Healthcare)。洗涤完成后用缓冲液A平衡色谱柱,直到盐浓度和UV280吸光度的曲线变为直线,然后将UV280吸光度自动归零。然后使用上样泵将Cas9蛋白以约5ml/min的流速上样到柱上。上样完成后用10ml IEX缓冲液A洗涤色谱柱,之后在缓冲液A中逐渐升高缓冲液B的体积比(从0%升高到50%),进而升高盐浓度梯度洗脱结合在阳离子交换住上的蛋白。Cas9通常在两个峰中洗脱,两个峰在260和280nm(A260/A280)处具有不同的吸收率。第一个峰在大约15%IEX缓冲液B处开始洗脱,最大值在~20%处洗脱,第二个峰在~25-40%处洗脱,最大值在~30%处洗脱,用收集管收集洗脱蛋白,每个管收集2ml。使用SDS-PAGE分析洗脱溶液中分是否存在Cas9,并将含有Cas9蛋白的洗脱液合并在一起。The dialysis sample is recovered from the dialysis membrane. Usually, a noticeable precipitation occurs after dialysis. The precipitate was removed by centrifugation at 4000 rpm for 5 minutes at 4°C. 5 ml of HiTrap SP were washed alternately with cation exchange (IEX) buffer A (20 mM HEPES-KOH, pH 7.0, 100 mM KCl, 10% glycerol) and buffer B (20 mM HEPES-KOH, pH 7.0, 1 M KCl, 10% glycerol) HP column (GE Healthcare). After washing, equilibrate the column with buffer A until the curve of salt concentration and UV280 absorbance becomes a straight line, then the UV280 absorbance is automatically zeroed. The Cas9 protein was then loaded onto the column using a loading pump at a flow rate of about 5 ml/min. After loading, wash the column with 10 ml of IEX buffer A, and then gradually increase the volume ratio of buffer B in buffer A (from 0% to 50%), and then increase the salt concentration gradient elution binding in Cation exchange on the protein. Cas9 typically elutes in two peaks with different absorbances at 260 and 280 nm (A260/A280). The first peak starts to elute at about 15% IEX buffer B with a maximum at ~20%, the second peak at ~25-40% with a maximum at ~30% , collect eluted protein with collection tubes, 2ml per tube. Fractions of the eluted solution were analyzed for the presence of Cas9 using SDS-PAGE, and the eluates containing Cas9 protein were pooled together.
使用100,000MWCO离心浓缩管以4000rpm的速度将含有Cas9蛋白的阳离子交换洗脱液浓缩至1ml。将浓缩液回收到1.5ml Eppendorf管中,并在4℃下以12,000rpm离心10分钟以除去沉淀的物质。同时,用分子筛缓冲液(20mM HEPES-KOH,pH 7.0,250mM  KCl,10%甘油,1mM TCEP)平衡Superdex 200 10/300凝胶过滤柱(GE Healthcare,24ml柱体积)。使用1ml样品定量环将浓缩的Cas9注入色谱柱。用25ml分子筛缓冲液以0.5ml/min的流速洗脱,用收集管收集洗脱液,每管收集500ul。Cas9通常以约12ml的体积洗脱。使用SDS-PAGE分析收集管中洗脱液是否含有Cas9,将含有Cas9的蛋白合并在一起。The cation exchange eluate containing Cas9 protein was concentrated to 1 ml using a 100,000 MWCO centrifugal concentrator tube at 4000 rpm. The concentrate was recovered into a 1.5 ml Eppendorf tube and centrifuged at 12,000 rpm for 10 minutes at 4°C to remove precipitated material. Meanwhile, a Superdex 200 10/300 gel filtration column (GE Healthcare, 24 ml column volume) was equilibrated with molecular sieve buffer (20 mM HEPES-KOH, pH 7.0, 250 mM KCl, 10% glycerol, 1 mM TCEP). The concentrated Cas9 was injected into the column using a 1 ml sample loop. Elute with 25ml molecular sieve buffer at a flow rate of 0.5ml/min, and collect the eluate with a collection tube, 500ul per tube. Cas9 typically elutes in a volume of about 12 ml. The eluates in the collection tubes were analyzed for Cas9 content using SDS-PAGE, and Cas9-containing proteins were pooled together.
第四天:蛋白质浓缩和储存Day 4: Protein concentration and storage
使用100,000MWCO离心浓缩管浓缩Cas9溶液(加入10%甘油)至下一步实验所需的浓度(通常~5mg/ml),浓缩完成后向蛋白溶液中补充10%的甘油,用于长期储存蛋白。根据以下假设确定浓度:1mg/ml在280nm处的吸光度为0.76(基于计算的消光系数120,450M-1cm-1)。为了避免不必要的冻融循环而导致酶活性下降,将浓缩的蛋白质样品分成10-20μl的分试样,并在液氮中快速冷冻。冷冻的Cas9可以在-80℃下保存几个月,而不会失去活性。使用前,将分试样解冻,并用存储缓冲液稀释至所需浓度。通常将Cas9稀释至2μM进行核酸内切酶活性测定。如果用于多个实验,Cas9可以在冰上或4℃下保存至少2天,而不会失去活性。但是,建议定期检查储存的样品中是否有任何沉淀物质,并通过SDS-PAGE检测蛋白质质量。Use a 100,000MWCO centrifugal concentrator tube to concentrate the Cas9 solution (add 10% glycerol) to the concentration required for the next experiment (usually ~5mg/ml). After the concentration is complete, add 10% glycerol to the protein solution for long-term protein storage. Concentrations were determined on the assumption that 1 mg/ml had an absorbance of 0.76 at 280 nm (based on a calculated extinction coefficient of 120, 450 M-1 cm-1). To avoid unnecessary freeze-thaw cycles leading to decreased enzymatic activity, the concentrated protein samples were divided into 10-20 μl aliquots and snap frozen in liquid nitrogen. Frozen Cas9 can be stored at -80°C for several months without loss of activity. Before use, thaw aliquots and dilute to desired concentration with storage buffer. Cas9 is typically diluted to 2 μM for endonuclease activity assays. If used for multiple experiments, Cas9 can be stored on ice or at 4°C for at least 2 days without loss of activity. However, it is recommended to periodically check the stored samples for any precipitated material and to check the protein quality by SDS-PAGE.
sgRNA的体外转录In vitro transcription of sgRNA
A、设计正向引物、T7启动子序列,向导序列,和sgRNA骨架(sgRNA scalffold)A. Design forward primer, T7 promoter sequence, guide sequence, and sgRNA scalffold
5’端前20个碱基共同构成sgRNA IVT F primer。The first 20 bases of the 5' end together constitute the sgRNA IVT F primer.
需要的是T7启动子的序列为:5′TAATACGACTCACTATA G 3′。T7RNA聚合酶从T7启动子序列标有下划线的G处开始转录,若无G,转录几乎不会发生。若向导序列的5’末端(紧挨着T7启动子3’端的位置)本身无碱基G,可以增加一个碱基G,两个碱基G(T7启动子3’端的G和向导序列5’端的G)可以提高体外转录效率,增加sgRNA产量(NEB官网)。 What is required is the sequence of the T7 promoter: 5'TAATACGACTCACTATA G 3'. T7 RNA polymerase begins transcription at the underlined G in the T7 promoter sequence, without which transcription hardly occurs. If there is no base G at the 5' end of the guide sequence (the position next to the 3' end of the T7 promoter), you can add one base G, two bases G (the G at the 3' end of the T7 promoter and the 5' of the guide sequence) G) at the end can improve in vitro transcription efficiency and increase sgRNA production (NEB official website).
B、设计反向引物。sgRNA骨架3’端序列添加poly T作为转录终止信号,反向互补后得到的序列即为sgRNA scal R primer序列:AAAAAAACACCGACTCGGTGCC。B. Design the reverse primer. Poly T is added to the 3' end sequence of the sgRNA backbone as a transcription termination signal, and the sequence obtained after reverse complementation is the sgRNA scal R primer sequence: AAAAAAACACCGACTCGGTGCC.
PCR方法构建体外转录所需DNA模板。PCR反应体系如下:PCR method to construct DNA template required for in vitro transcription. The PCR reaction system is as follows:
表6:用于构建体外转录模板所需PCR体系Table 6: PCR system required for constructing in vitro transcription templates
成分Element 用量(单位:μL)Dosage (unit: μL)
pX330质粒(10ng/μL)pX330 plasmid (10ng/μL) 1.01.0
sgRNA IVT F primer(10μM)sgRNA IVT F primer (10μM) 1.01.0
sgRNA scal R primer(10μM)sgRNA scal R primer (10μM) 1.01.0
2×vazyme phanta master mix2×vazyme phanta master mix 10.010.0
ddH2OddH2O 6.06.0
总体积total capacity 20.020.0
PCR程序如下:95℃,3min;{98℃,20sec;60℃,15sec;72℃,15sec}35个循环;72℃,1min;4℃,∞。The PCR program was as follows: 95°C, 3 min; {98°C, 20sec; 60°C, 15sec; 72°C, 15sec} 35 cycles; 72°C, 1 min; 4°C, ∞.
琼脂糖凝胶电泳和胶回收。Agarose gel electrophoresis and gel recovery.
用NEB T7 transcription kit进行体外转录。在RNA超净台中按下表配制体外转录体系。In vitro transcription was performed with the NEB T7 transcription kit. Prepare the in vitro transcription system according to the following table in the RNA clean bench.
表7:NEB T7 RNA聚合酶体外转录体系Table 7: NEB T7 RNA polymerase in vitro transcription system
成分Element 用量(单位:μL)Dosage (unit: μL)
无核酶水Nuclease-free water 18-x18-x
NTP缓冲液混合物(6.7mM)NTP buffer mix (6.7mM) 1010
模板DNAtemplate DNA xx
T7 RNA聚合酶T7 RNA polymerase 22
总体积total capacity 3030
注:模板DNA的实际用量为1μg为宜,具体用量xμL由步骤5胶回收得到的DNA模板的浓度计算得到。Note: The actual amount of template DNA is 1 μg, and the specific amount x μL is calculated from the concentration of the DNA template recovered from the gel in step 5.
上述体系配制完成后,充分吹吸混匀,放入PCR仪中,37℃下放置16h,然后将产物进行纯化。若短时间内不进行纯化操作,将产物放于-20℃冰箱中,防止RNA降解。After the preparation of the above system is completed, fully blow, suck and mix, put it into a PCR machine, and place it at 37°C for 16 hours, and then purify the product. If the purification operation is not performed in a short time, the product should be placed in a -20°C refrigerator to prevent RNA degradation.
体外转录产物纯化。下列操作尽可能在RNA超净台中进行,防止RNase污染导致RNA降解。In vitro transcript purification. The following operations should be performed in an RNA clean bench as much as possible to prevent RNA degradation caused by RNase contamination.
(1)DNA消化。每份样品中加入2μL DNase1和18μL超纯水(ultrapure water),吹吸混匀后放入PCR仪中:37℃,15min。(1) DNA digestion. Add 2 μL of DNase1 and 18 μL of ultrapure water to each sample, mix by blowing and suction, and put it into the PCR machine: 37°C, 15min.
(2)向每份样品中加入50μL洗脱液(Elution Solution),此时总体积为100μL,吹吸混匀。(2) Add 50 μL of Elution Solution to each sample, the total volume is 100 μL at this time, and mix by pipetting.
(3)向每份样品中加入350μL结合液(Binding Solution),用移液枪轻轻吹吸混匀。(3) Add 350 μL of Binding Solution to each sample, and mix with a pipette gently.
(4)向每份样品中加入250μL的100%乙醇溶液(NEB的T7体外转录试剂盒当中没有100%无水乙醇,需要实验室另行购买),用移液枪轻轻吹吸混匀。(4) Add 250 μL of 100% ethanol solution to each sample (NEB’s T7 in vitro transcription kit does not contain 100% absolute ethanol, which needs to be purchased separately from the laboratory), and mix by gently blowing with a pipette.
(5)将带有滤芯的吸附管(Filter Catridge)放入接收洗脱管(Collection and Elution Tube)中。将上述RNA混合液加入吸附管中。(5) Put the Filter Catridge with the filter element into the Collection and Elution Tube. Add the above RNA mixture to the adsorption tube.
(6)12000rpm离心1min,使液体通过滤芯,在此过程中,RNA产物会与吸附管的滤芯结合,余下物质会随同液体进入接收管中。(6) Centrifuge at 12000 rpm for 1 min to make the liquid pass through the filter element. During this process, the RNA product will be combined with the filter element of the adsorption tube, and the remaining substances will enter the receiving tube with the liquid.
(7)弃去接收管中的废液,向吸附管中加入500μL清洗液(Wash Solution)。12000rpm离心1min,使清洗液通过滤芯,在此过程中,杂质会从吸附管的滤芯上洗脱、随同清洗液进入接收管中。(7) Discard the waste liquid in the receiving tube, and add 500 μL of washing solution (Wash Solution) to the adsorption tube. Centrifuge at 12000rpm for 1min to make the cleaning solution pass through the filter element. During this process, impurities will be eluted from the filter element of the adsorption tube and enter the receiving tube with the cleaning solution.
(8)重复步骤(7)。(8) Repeat step (7).
(9)12000rpm离心2min,通过该步骤使酒精进一步挥发。(9) Centrifuge at 12000 rpm for 2 min, and further volatilize alcohol through this step.
(10)将带有滤芯的吸附管转移至一个新的接收管中,在RNA超净台中敞口放置5-10min,使酒精彻底挥发。同时用金属浴在55℃下预热适量超纯水。(10) Transfer the adsorption tube with the filter element to a new receiving tube, and leave it open in the RNA ultra-clean bench for 5-10 minutes to completely evaporate the alcohol. At the same time, an appropriate amount of ultrapure water was preheated at 55°C with a metal bath.
(11)待酒精彻底挥发后,向吸附管的滤芯上滴加50-100μL已预热的超纯水,置于RNA超净台,静置2min,使RNA产物充分溶解进入超纯水中。(11) After the alcohol has completely evaporated, add 50-100 μL of preheated ultrapure water dropwise to the filter element of the adsorption tube, place it on the RNA ultra-clean bench, and let it stand for 2 minutes to fully dissolve the RNA product into the ultrapure water.
(12)12000rpm离心1min,使RNA产物随超纯水进入接收管,弃去吸附管,用nanodrop测定RNA浓度。做好标记,放入-20℃冰箱中保存。(12) Centrifuge at 12,000 rpm for 1 min, make the RNA product enter the receiving tube with ultrapure water, discard the adsorption tube, and measure the RNA concentration with nanodrop. Label and store in -20°C refrigerator.
外源模板ssODN的设计与合成Design and synthesis of exogenous template ssODN
根据已设计的向导序列,确定其在基因组上的靶标序列,引入2处同义突变(突变碱基的位置尽可能靠近向导序列),用以辨别是否发生同源修复,同时防止对基因功能造成影响。靶标序列上下游分别延伸50-55nt,得到约130nt的ssODN序列。序列信息交由生工生物工程股份有限公司进行合成、纯化。According to the designed guide sequence, determine its target sequence on the genome, and introduce 2 synonymous mutations (the position of the mutated base is as close to the guide sequence as possible) to identify whether homologous repair occurs, and at the same time prevent the gene function from causing damage influences. The upstream and downstream of the target sequence were respectively extended by 50-55nt, resulting in a ssODN sequence of about 130nt. The sequence information was handed over to Sangon Bioengineering Co., Ltd. for synthesis and purification.
小鼠胚胎的获取与培养Acquisition and culture of mouse embryos
雌鼠的超数排卵superovulation in female mice
(1)选择C57BL/6N雌鼠。(1) Select C57BL/6N female mice.
(2)根据雌鼠的订购日期和体重,选定相应日期对雌鼠注射第一针PMSG(孕马血清促性腺激素)。每只雌鼠腹腔注射0.2mL(10U)的PMSG。本实验对雌鼠注射PMSG的时间通常为下午3:30-4:30。(2) According to the order date and body weight of the female mice, select the corresponding date to inject the first injection of PMSG (pregnant horse serum gonadotropin) into the female mice. Each female mouse was injected intraperitoneally with 0.2 mL (10 U) of PMSG. In this experiment, female mice were usually injected with PMSG at 3:30-4:30 pm.
(3)46-48小时后每只雌鼠腹腔注射0.2mL(10U)的hCG(绒毛膜促性腺激素),本实验对雌鼠注射hCG的时间通常为下午2:30-3:30。(3) After 46-48 hours, each female mouse was intraperitoneally injected with 0.2 mL (10 U) of hCG (chorionic gonadotropin). The time of hCG injection to female mice in this experiment was usually 2:30-3:30 pm.
(4)雌鼠注射hCG后,将雌鼠与雄鼠按1:1比例合笼。合笼的时,换一个新的鼠笼,先将雄鼠放入鼠笼,再将雌鼠放入。(4) After the female mice were injected with hCG, the female mice and the male mice were caged in a ratio of 1:1. When the cages are closed, change to a new rat cage, put the male rat into the rat cage first, and then put the female rat into the rat cage.
(5)次日清晨检查雌鼠是否有阴道栓产生,未见阴道栓的雌鼠进行安乐死,有阴道栓产生的雌鼠取回实验室用于胚胎采集。(5) Check whether the female mice have vaginal plugs in the next morning. The female mice without vaginal plugs are euthanized, and the female mice with vaginal plugs are taken back to the laboratory for embryo collection.
小鼠胚胎的获取Acquisition of mouse embryos
(1)将雌鼠用颈部脱臼法处死,打开腹腔,找到输卵管、子宫以及膨大的壶腹部,用剪子将输卵管上附着的粘膜剥离,剪下壶腹部及附近的少量组织(尽量不要将子宫剪下,可以剪下少量的输卵管),放入提前预热的DPBS中。(1) The female rat was killed by cervical dislocation, the abdominal cavity was opened, the fallopian tube, uterus and the enlarged ampulla were found, the mucosa attached to the fallopian tube was peeled off with scissors, and a small amount of tissue in the ampulla and its vicinity was cut off (try not to remove the uterus Cut, you can cut a small amount of fallopian tubes), and put them in pre-warmed DPBS.
(2)再用钝头镊子将输卵管转移至另外一管已预热的DPBS中。(2) Use blunt forceps to transfer the fallopian tube to another tube of pre-warmed DPBS.
(3)向3.5mm的培养皿上滴加提前预热的M2培养基,每个液滴20μL,用钝头镊子将输卵管转移至M2液滴中,每个液滴中放一个输卵管。(3) Add pre-warmed M2 medium dropwise to a 3.5mm petri dish, 20 μL per droplet, and transfer the fallopian tubes to the M2 droplets with blunt forceps, placing one fallopian tube in each droplet.
(4)双手分别持一把尖头镊子,在体式显微镜下,将壶腹部以外多余的部分去除,用尖头镊子将壶腹部撕开,把胚胎释放出来。向20μL M2液滴中加入10μL 300ng/μL的透明质酸酶,待卵丘细胞从胚胎上消化下来,用口吸管将胚胎转移至新的M2液滴中,转移3-4次,以彻底去除透明质酸酶和杂质。(4) Holding a pair of pointed tweezers in both hands, under the asana microscope, remove the excess part outside the ampulla, tear the ampulla with pointed tweezers, and release the embryo. Add 10μL of 300ng/μL hyaluronidase to 20μL M2 droplet, after the cumulus cells are digested from the embryo, transfer the embryo to a new M2 droplet with a mouth pipette, transfer 3-4 times to completely remove Hyaluronidase and impurities.
小鼠胚胎的培养Culture of mouse embryos
(1)向3.5mm的胚胎培养皿上滴加40μL KSOM液滴,每个培养皿可滴加3个液滴,液滴之间距离适当即可。加入3mL的矿物油,保证能完全覆盖液滴,若液滴覆盖不完全,会导致KSOM液滴挥发,各成分的浓度发生变化,影响胚胎存活。培养皿可提前一天制备,放入培养箱中平衡过夜。(1) Drop 40μL of KSOM droplets onto a 3.5mm embryo culture dish, 3 droplets can be added to each culture dish, and the distance between the droplets is appropriate. Add 3 mL of mineral oil to ensure that the droplets can be completely covered. If the droplets are not covered completely, the KSOM droplets will volatilize, and the concentration of each component will change, which will affect the survival of embryos. Petri dishes can be prepared a day in advance and placed in an incubator to equilibrate overnight.
(2)将胚胎转入提前置于培养箱中平衡、覆盖着矿物油的KSOM液滴中进行培养。(2) The embryos were transferred into KSOM droplets equilibrated in an incubator in advance and covered with mineral oil for culture.
(3)培养箱的条件为:5%CO2浓度,95%氧气(氧气纯度≥99%即可)浓度,饱和湿度,37℃恒温培养。(3) The conditions of the incubator are: 5% CO2 concentration, 95% oxygen concentration (oxygen purity ≥ 99%) concentration, saturated humidity, and constant temperature incubation at 37°C.
多基因基于非同源修复(NHEJ)的小鼠受精卵的电转染Electrotransfection of multigene non-homologous repair (NHEJ)-based mouse zygotes
以同时编辑8个基因为例。Take the example of editing 8 genes at the same time.
下表为同时编辑的8个基因的名称以及对应的sgRNA序列。The table below shows the names of the 8 genes edited at the same time and the corresponding sgRNA sequences.
表8:同时编辑的8个基因的名称以及对应的sgRNA序列Table 8: Names and corresponding sgRNA sequences of the 8 genes edited simultaneously
Figure PCTCN2021122721-appb-000007
Figure PCTCN2021122721-appb-000007
1.配制电转染预混液A。1. Prepare electrotransfection master mix A.
表9:电转染预混液A配方Table 9: Recipe of Electrotransfection Master Mix A
电转预混体系AElectro-to-premix system A 用量Dosage
5×RNP缓冲液5×RNP buffer 2μL2μL
Cas9蛋白Cas9 protein 16μg16μg
多个sgRNAMultiple sgRNAs (每个1μg,总共8ug)(1μg each, 8ug total)
TE缓冲液TE buffer 补齐至10μLMake up to 10 μL
总体积total capacity 10μL10μL
注:TE缓冲液5×RNP缓冲液的配方参见表4和表5。Note: See Table 4 and Table 5 for the recipe of TE buffer 5×RNP buffer.
表10:TE缓冲液配方Table 10: TE Buffer Recipe
TE缓冲液成分TE buffer composition 用量Dosage
1M Tris-HCl(pH 7.4)1M Tris-HCl (pH 7.4) 10mL10mL
0.5M EDTA0.5M EDTA 2mL2mL
去核酸酶水(nuclease-free water)Nuclease-free water 988mL988mL
总体积total capacity 1L1L
表11:RNP缓冲溶液配方Table 11: RNP buffer solution formulation
RNP缓冲液成分RNP buffer composition 用量(mL)Dosage (mL)
1M HEPES,pH 7.51M HEPES, pH 7.5 1.01.0
3M氯化钾3M Potassium Chloride 2.52.5
1M氯化镁1M magnesium chloride 0.050.05
100%甘油100% Glycerin 5.05.0
5mM TCEP5mM TCEP 0.50.5
去核酸酶水(nuclease-free water)Nuclease-free water 0.950.95
总体积total capacity 1010
2.将电转染预混液A放入PCR仪,37℃,10min;该步骤的目的是使Cas9蛋白和sgRNA在体外结合。2. Put the electrotransfection master mix A into the PCR machine, 37°C for 10 min; the purpose of this step is to combine Cas9 protein and sgRNA in vitro.
3.将胚胎从放入已预热的M2液滴当中,清洗2次。3. Put the embryos into the pre-warmed M2 droplet and wash twice.
4.将胚胎转移至台式液中,处理5sec。4. Transfer the embryos to the benchtop solution and process for 5 sec.
5.将胚胎转移至已预热的OptiMem Ⅰ液滴中,清洗2次。5. Transfer the embryos to pre-warmed OptiMem I droplets and wash twice.
6.向10μL OptiMem Ⅰ中,加入10μL预混液,吹吸混匀;取15μL加入电转染皿中,将胚胎加入余下5μL液滴中,用移液枪轻轻吹吸打混匀,将胚胎转移至电转染皿中,再将余下液体补加至电转染皿中。6. Add 10 μL of premix to 10 μL OptiMem I, and mix by pipetting; add 15 μL to the electrotransfection dish, add the embryos to the remaining 5 μL droplets, and gently pipette and mix well with a pipette. Transfer to the electrotransfection dish, and then add the remaining liquid to the electrotransfection dish.
7.按表12调整电转染仪参数,确认无误后,点击“start”,从体视镜中可以观察到电击瞬间,电转染皿有气泡产生,电击结束后,将胚胎转移到KSOM当中,放入培养箱继续培养。7. Adjust the parameters of the electrotransfection instrument according to Table 12. After confirming that it is correct, click "start". The moment of electric shock can be observed from the stereoscope, and bubbles are generated in the electrotransfection dish. After the electric shock is completed, transfer the embryos to the KSOM. , put it into the incubator to continue culturing.
表12:电转染参数设置Table 12: Electrotransfection parameter settings
电转染条件Electrotransfection conditions 电转染参数Electrotransfection parameters
电压(Voltage)Voltage 30V30V
脉冲次数(Pulses)Pulses (Pulses) 88
脉冲长度(Pulses length)Pulses length 3ms3ms
脉冲间隔(Pulse interval)Pulse interval 100ms100ms
一代测序检测基因编辑效率Next-Generation Sequencing Detects Gene Editing Efficiency
1.利用NCBI网站上的primer-BLAST分别在编辑位点上下游300bp附近的位置设计一对TIDE引物,分别命名为TIDE F primer和TIDE R primer。将引物序列交由生物公司进行合成。1. Use the primer-BLAST on the NCBI website to design a pair of TIDE primers around 300bp upstream and downstream of the editing site, named TIDE F primer and TIDE R primer respectively. The primer sequences were handed over to a biological company for synthesis.
2.观察胚胎发育情况,通常情况下,受精卵取出后96h左右,即可发育成囊胚,根据需检测的囊胚个数或组数将QuickExtract分装至PCR管中,QuickExtract的用量可以为10μL。2. Observe the development of embryos. Usually, about 96 hours after the fertilized eggs are taken out, they can develop into blastocysts. According to the number of blastocysts or groups to be detected, QuickExtract is divided into PCR tubes. The dosage of QuickExtract can be 10 μL.
3.用口吸管将发育至囊胚期的胚胎转入M2液滴中清洗1-2次,然后加入分装有QuickExtract的PCR管中。做好标记。3. Use an oral pipette to transfer the embryos that have developed to the blastocyst stage into M2 droplets for 1-2 washes, and then add them to PCR tubes containing QuickExtract. Make a mark.
4.用涡旋振荡器震荡15-30sec后,将样品放入PCR仪,运行下列程序:65℃,15min;68℃,15min;98℃,10min。即可得到胚胎基因组。用nanodrop测定基因组DNA浓度。4. After shaking with a vortex shaker for 15-30 sec, put the sample into the PCR machine and run the following program: 65°C, 15min; 68°C, 15min; 98°C, 10min. The embryo genome can be obtained. Genomic DNA concentration was determined with nanodrop.
5.用PCR方法将编辑位点附近的片段扩增,用于进行一代测序。具体步骤如下:5. Amplify the fragments near the editing site by PCR method for next-generation sequencing. Specific steps are as follows:
(1)配制PCR体系。(1) Prepare a PCR system.
表13:用于进行基因编辑结果检测的PCR体系Table 13: PCR systems used to detect gene editing results
成分Element 用量(单位:μL)Dosage (unit: μL)
基因组DNA(20ng/μL)Genomic DNA (20ng/μL) 2.02.0
TIDE F primer(10μM)TIDE F primer (10μM) 1.01.0
TIDE R primer(10μM)TIDE R primer (10μM) 1.01.0
2×vazyme phanta master mix2×vazyme phanta master mix 10.010.0
ddH2OddH2O 6.06.0
总体积total capacity 20.020.0
(2)将上述样品混匀后,放入PCR仪中。PCR程序如下:95℃,3min,{98℃,20sec;Tm℃,15sec;72℃,tsec}34个循环,72℃,1min;4℃,∞。[注:Tm为退火温度,按公司合成的引物侧壁标记的退火温度进行设置即可;t为延伸时间,vazyme公司的phanta以基因组为模板时,扩增速度按1kb/60sec进行计算即可](2) After mixing the above samples, put them into the PCR machine. The PCR program was as follows: 95°C, 3 min, {98°C, 20sec; Tm°C, 15sec; 72°C, tsec} 34 cycles, 72°C, 1 min; 4°C, ∞. [Note: Tm is the annealing temperature, which can be set according to the annealing temperature marked on the side walls of the primers synthesized by the company; t is the extension time. When the phanta of vazyme company uses the genome as the template, the amplification speed can be calculated by 1kb/60sec ]
(3)将PCR产物交由测序公司进行一代测序。(3) Submit the PCR product to a sequencing company for next-generation sequencing.
(4)结合一代测序结果,利用在线平台TIDE(https://tide.deskgen.com/)对编辑效率进行计算。(4) Combined with the results of next-generation sequencing, the online platform TIDE (https://tide.deskgen.com/) was used to calculate the editing efficiency.
二代测序检测基因编辑效率Next-Generation Sequencing Detects Gene Editing Efficiency
1.对于一代测序结果中出现非纯和突变样品,采用二代测序的方法,对编辑基因的类型进行精准鉴定,具体方法如下:利用NCBI网站上的primer-BLAST分别在编辑位点上下游100bp附近的位置设计一对TIDE引物,分别命名为TIDE F1和TIDE R1,在引物的5’端分别加上用于二代测序PCR扩增的引物结合序列,序列如下,将引物序列交由生物公司进行合成。1. For the impure and mutant samples in the first-generation sequencing results, the second-generation sequencing method is used to accurately identify the type of edited gene. The specific method is as follows: use the primer-BLAST on the NCBI website to separate 100bp upstream and downstream of the editing site. A pair of TIDE primers were designed at nearby positions, named TIDE F1 and TIDE R1 respectively, and the primer binding sequences for next-generation sequencing PCR amplification were added to the 5' ends of the primers. The sequences are as follows. Synthesize.
TIDE F1添加序列:5’-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-3’;TIDE F1 added sequence: 5'-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-3';
TIDE R1添加序列:5’-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-3’。TIDE R1 added sequence: 5'-TCGTCGGCAGCGTCAGATGTGTATAAGAGACAG-3'.
2.使用TIDE F primer和TIDE R primer按照表13中反应体系对胚胎基因组进行第一轮扩增,将第一轮产物用作于第二轮PCR扩增的底物,根据下表中的反应体系进行PCR扩增。2. Use TIDE F primer and TIDE R primer to carry out the first round of amplification to the embryo genome according to the reaction system in Table 13, and use the first round product as the substrate for the second round of PCR amplification, according to the reaction in the following table The system was subjected to PCR amplification.
表14:二代测序进行基因编辑结果检测的第二轮PCR体系Table 14: Second-round PCR system for gene editing result detection by next-generation sequencing
成分Element 用量(单位:μL)Dosage (unit: μL)
2X PCR mix2X PCR mix 55
TIDE F1(10μM)TIDE F1(10μM) 0.050.05
TIDE R1(10μM)TIDE R1(10μM) 0.050.05
barcode i5 F(10uM)barcode i5 F(10uM) 0.50.5
barcode i7 R(10uM)barcode i7 R(10uM) 0.50.5
第一轮PCR产物First round PCR product 11
H2OH2O 2.92.9
barcode i5 F和barcode i7 R序列如下,NNNNNNNN为序列条码用于标记二代测序样品,N为随机碱基:The sequences of barcode i5 F and barcode i7 R are as follows, NNNNNNNN is the sequence barcode used to label the next-generation sequencing samples, and N is a random base:
barcode i5 F:barcode i5 F:
5’-AATGATACGGCGACCACCGAGATCTACACNNNNNNNNTCGTCGGCAGCGTC-3’5’-AATGATACGGCGACCACCGAGATCTACACNNNNNNNNTCGTCGGCAGCGTC-3’
barcode i7 R:barcode i7 R:
5’-CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTCTCGTGGGCTCGG-3’。5'-CAAGCAGAAGACGGCATACGAGATNNNNNNNNGTCTCGTGGGCTCGG-3'.
3.PCR反应完成后,将样品加到1%琼脂糖凝胶中电泳,电泳条件为130V 20min,电用完成后用刀片将PCR目的条带(根据NCBI设计的PCR引物所产生的条带计算大小,通常为300bp左右)切下来,使用诺唯赞公司的胶回收试剂盒回收纯化PCR产物,将纯化好的产物送给二代测序公司测序。3. After the PCR reaction is completed, the sample is added to a 1% agarose gel for electrophoresis, and the electrophoresis condition is 130V for 20min. After the electricity is completed, the PCR target band (calculated according to the band generated by the PCR primers designed by NCBI) is Size, usually about 300bp), cut it out, use the gel recovery kit of Novizan to recover and purify the PCR product, and send the purified product to the next-generation sequencing company for sequencing.
4.返回的测序结果使用软件CRISPResso进行分析,判断基因组突变类型,具体分析流程参照软件说明。4. The returned sequencing results are analyzed using the software CRISPResso to determine the type of genomic mutation. For the specific analysis process, please refer to the software instructions.
实验结论:本实施例中可以实现八个位点同时编辑。Experimental conclusion: In this example, simultaneous editing of eight sites can be achieved.
实施例2Example 2
在本实施例中,如无特别说明,按照实施例1的方法进行。In this example, unless otherwise specified, the method of Example 1 was followed.
1、透明带处理时间优化1. Optimization of transparent belt processing time
发明人测试了在酸性台式液中处理透明带的时间。结果发现,透明带处理方案为酸性台式液中放置5s,加转移时间总共为10s。在这一条件下,发明人电转染编辑Emx1基因,电转染后获取Emx1基因被编辑囊胚比例最高,可以达到96%。结果如表15所示。The inventors tested the time to treat the zona pellucida in an acidic benchtop solution. It was found that the zona pellucida treatment scheme was placed in the acidic benchtop solution for 5s, and the total transfer time was 10s. Under this condition, the inventors edited the Emx1 gene by electrotransfection, and the percentage of blastocysts obtained by electrotransfection after the Emx1 gene was edited was the highest, reaching 96%. The results are shown in Table 15.
表15:小鼠胚胎透明带处理对囊胚发育率、编辑效率影响Table 15: Effects of zona pellucida treatment on blastocyst development rate and editing efficiency in mouse embryos
Figure PCTCN2021122721-appb-000008
Figure PCTCN2021122721-appb-000008
2、外源基因的比例优化2. The proportion of foreign genes is optimized
不同浓度比例的Cas9/sgRNA混合物基因编辑效率会有不同,发明人对此进行了测试,发现高浓度Cas9/sgRNA可以实现较高的编辑效率,但是考虑到高浓度Cas9/sgRNA可能带来的脱靶率高等风险,发明人降低了Cas9/sgRNA浓度,在Cas9/sgRNA浓度分 别为0.4ug/微升,0.1ug/微升时可以实现100%基因编辑效率;当浓度进一步降低后,基因编辑效率显著降低。在结果如表16所示。The gene editing efficiency of Cas9/sgRNA mixture with different concentration ratios will be different. The inventors have tested this and found that high concentration of Cas9/sgRNA can achieve higher editing efficiency, but considering the possible off-target caused by high concentration of Cas9/sgRNA The inventors reduced the Cas9/sgRNA concentration and achieved 100% gene editing efficiency when the Cas9/sgRNA concentrations were 0.4ug/µl and 0.1ug/µl respectively; when the concentration was further reduced, the gene editing efficiency was significantly reduce. The results are shown in Table 16.
表16:不同浓度比例的Cas9/sgRNA混合物基因编辑效率结果Table 16: Results of gene editing efficiency of Cas9/sgRNA mixture with different concentration ratios
Figure PCTCN2021122721-appb-000009
Figure PCTCN2021122721-appb-000009
在进行多基因编辑时,发明人同样测试了不同浓度比例的Cas9/sgRNA的多基因编辑效率。依据单基因编辑获取的Cas9/sgRNA浓度,发明人从总的Cas9/sgRNA浓度分别为0.4ug/微升,0.1ug/微升开始测试,分别提高Cas9以及sgRNA的浓度。发明人以编辑5个基因作为测试,最终发现在每个基因对应的sgRNA浓度为0.1ug/微升,Cas9浓度为总的sgRNA浓度的四倍时,多基因编辑效率最高。When performing multi-gene editing, the inventors also tested the multi-gene editing efficiency of different concentration ratios of Cas9/sgRNA. According to the concentration of Cas9/sgRNA obtained by single gene editing, the inventors started the test from the total Cas9/sgRNA concentration of 0.4ug/microliter and 0.1ug/microliter respectively, and increased the concentration of Cas9 and sgRNA respectively. The inventors edited 5 genes as a test, and finally found that the multi-gene editing efficiency was the highest when the sgRNA concentration corresponding to each gene was 0.1ug/microliter and the Cas9 concentration was four times the total sgRNA concentration.
表17:5个基因编辑效率结果Table 17: 5 Gene Editing Efficiency Results
Figure PCTCN2021122721-appb-000010
Figure PCTCN2021122721-appb-000010
3、转染时机优化3. Optimization of transfection timing
在优化HDR效率时,发明人发现杂合HDR比例很高,但是无法获取纯合HDR胚胎。发明人优化了Cas9/sgRNA/ssODN的浓度,ssODN的长度,电转染的参数等,都没有获得纯合HDR胚胎。猜测可能是细胞周期的原因,于是,发明人测试了电转染的时间,发现在S期以前进行电转染可以显著提高纯合HDR比例。结果如下表所示。When optimizing HDR efficiency, the inventors found that the proportion of heterozygous HDR was high, but homozygous HDR embryos could not be obtained. The inventors optimized the concentration of Cas9/sgRNA/ssODN, the length of ssODN, the parameters of electrotransfection, etc., but no homozygous HDR embryos were obtained. Guessing that it may be the cause of the cell cycle, the inventors tested the time of electrotransfection and found that electrotransfection before S phase can significantly increase the proportion of homozygous HDR. The results are shown in the table below.
表18:电转染时间对纯合HDR突变体比例的影响Table 18: Effect of electrotransfection time on the proportion of homozygous HDR mutants
Figure PCTCN2021122721-appb-000011
Figure PCTCN2021122721-appb-000011
4、电转染参数优化4. Optimization of electrotransfection parameters
在优化电转染参数之前,发明人已经优化过了Cas9/sgRNA浓度,发现每个基因对应的sgRNA浓度为0.1ug/微升,Cas9浓度为总的sgRNA浓度的四倍时,多基因编辑效率最高。在此基础上,发明人进一步优化了电转染的参数。发明人首先提高了电压,发现在高电压情况下,胚胎囊胚发育率显著降低。于是,发明人保持电压不变,优化了脉冲次数,发现在8次脉冲时,可以得到最高的多基因编辑效率。参数结果如下表所示。Before optimizing the electrotransfection parameters, the inventors have optimized the Cas9/sgRNA concentration and found that the sgRNA concentration corresponding to each gene is 0.1ug/μl, and the multi-gene editing efficiency is higher when the Cas9 concentration is four times the total sgRNA concentration. Highest. On this basis, the inventors further optimized the parameters of electrotransfection. The inventor first increased the voltage and found that the embryo blastocyst development rate was significantly reduced under the high voltage condition. Therefore, the inventors kept the voltage unchanged, optimized the number of pulses, and found that the highest multi-gene editing efficiency could be obtained at 8 pulses. The parameter results are shown in the table below.
表19:电转染参数Table 19: Electrotransfection parameters
电转染仪Electrotransfection BTX Gemini2电转染仪BTX Gemini2 Electrotransfection Instrument
电转染条件Electrotransfection conditions 电转染参数Electrotransfection parameters
电压(Voltage)Voltage 30V30V
脉冲次数(Pulses)Pulses (Pulses) 88
脉冲长度(Pulses length)Pulses length 3ms3ms
脉冲间隔(Pulse interval)Pulse interval 100ms100ms
5、编辑胚胎回植后出生小鼠突变类型鉴定5. Identification of mutation types in mice born after reimplantation of edited embryos
本发明建立了一项成熟高效的胚胎电转染基因编辑技术,同时也建立了高效获取获取基因突变小鼠的方法。我们将利用该技术获取的突变受精卵细胞回植到母鼠体内,让突变受精卵细胞经历正常的胚胎发育周期,直至小鼠出生。待小鼠出生后2周左右,剪取小鼠的脚趾放入20ul QuickExtract中,利用实施例1中所描述的步骤提取小鼠基因组和鉴定出生小鼠的突变类型。The invention establishes a mature and efficient embryo electric transfection gene editing technology, and also establishes a method for efficiently obtaining and obtaining gene mutant mice. We replanted the mutant fertilized egg cells obtained by this technology into the female mice, and let the mutant fertilized egg cells go through the normal embryonic development cycle until the mouse was born. About 2 weeks after the mice were born, the toes of the mice were clipped and placed in 20ul QuickExtract, and the mouse genome was extracted and the mutation type of the newborn mice was identified using the steps described in Example 1.
通过本发明构建的Emx1、Zswim3、Tyr以及致死基因Foxg1突变受精卵细胞回植后所出生的突变小鼠突变类型鉴定结果如下表。经鉴定,所有通过本发明获取的小鼠在相应的位点均发生了基因编辑,编辑效率100%。此外,利用本发明获得的Foxg1突变受精卵,回植出生后的小鼠均为单缺失致死基因的突变体,效率高达100%。因此,本发明能极大提高单缺失致死基因的突变体的获取效率,有效地推动致死基因在动物中生物学功能研究。除致死基因外,其他基因编辑的突变受精卵细胞发育成的小鼠均具有较高纯合HDR突变比例,突变比例均高于30%。The identification results of mutation types of mutant mice born after the reimplantation of Emx1, Zswim3, Tyr and lethal gene Foxg1 mutant fertilized egg cells constructed by the present invention are as follows. It is identified that all the mice obtained by the present invention have undergone gene editing at the corresponding sites, and the editing efficiency is 100%. In addition, using the Foxg1 mutant fertilized egg obtained by the present invention, the replanted mice after birth are all mutants of single deletion lethal gene, and the efficiency is as high as 100%. Therefore, the present invention can greatly improve the efficiency of obtaining mutants of single deletion lethal gene, and effectively promote the biological function research of lethal gene in animals. Except for lethal genes, the other gene-edited mutant zygotes developed into mice with a higher proportion of homozygous HDR mutations, all higher than 30%.
表20:突变受精卵细胞回植后出生小鼠突变体类型Table 20: Types of Mutant Mutants Born After Mutant Fertilized Oocyte Reimplantation
Figure PCTCN2021122721-appb-000012
Figure PCTCN2021122721-appb-000012
注:KI突变体为含有HDR突变类型突变体。Note: KI mutants are mutants containing HDR mutants.
综上,本实施例的方法可以实现小鼠胚胎电转染基因编辑,并且,其优势在于下列的至少之一:To sum up, the method of this embodiment can realize gene editing by electrotransfection of mouse embryos, and its advantage lies in at least one of the following:
(1)高通量,每次电转染实验可以同时编辑400枚胚胎。(1) High-throughput, 400 embryos can be edited simultaneously per electrotransfection experiment.
(2)高效率,单位点基因编辑效率高于90%。(2) High efficiency, the single-site gene editing efficiency is higher than 90%.
(3)高纯合HDR突变体比例,纯合HDR突变体比例高于14%。(3) The proportion of homozygous HDR mutants was high, and the proportion of homozygous HDR mutants was higher than 14%.
(4)可以同时实现多基因编辑,已对同时编辑8个基因进行效率统计,在同一个胚胎同时实现至少6个位点基因编辑的效率为100%,同时全部8个基因编辑的效率高于30%。(4) Multi-gene editing can be realized at the same time. The efficiency of editing 8 genes at the same time has been calculated. The efficiency of gene editing at least 6 loci in the same embryo is 100%, and the efficiency of all 8 genes at the same time is higher than 30%.
(5)高HDR突变小鼠获取效率,单位点基因编辑,HDR突变小鼠获取效率高于55.6%,纯合HDR突变体小鼠获取效率高于30%。其中,单缺失致死基因的突变体小鼠获取效率高 达100%。(5) The acquisition efficiency of high HDR mutant mice, single-site gene editing, the acquisition efficiency of HDR mutant mice is higher than 55.6%, and the acquisition efficiency of homozygous HDR mutant mice is higher than 30%. Among them, the efficiency of obtaining mutant mice with single deletion lethal gene is as high as 100%.
在本发明的描述中,“多个”或“至少一个”的含义是两个或两个以上,除非另有明确具体的限定。In the description of the present invention, "a plurality" or "at least one" means two or more, unless otherwise expressly and specifically defined.
在本说明书的描述中,参考术语“一个实施例”、“一些实施例”、“示例”、“具体示例”、或“一些示例”等的描述意指结合该实施例或示例描述的具体特征、结构、材料或者特点包含于本发明的至少一个实施例或示例中。在本说明书中,对上述术语的示意性表述不必须针对的是相同的实施例或示例。而且,描述的具体特征、结构、材料或者特点可以在任一个或多个实施例或示例中以合适的方式结合。此外,在不相互矛盾的情况下,本领域的技术人员可以将本说明书中描述的不同实施例或示例以及不同实施例或示例的特征进行结合和组合。In the description of this specification, description with reference to the terms "one embodiment," "some embodiments," "example," "specific example," or "some examples", etc., mean specific features described in connection with the embodiment or example , structure, material or feature is included in at least one embodiment or example of the present invention. In this specification, schematic representations of the above terms are not necessarily directed to the same embodiment or example. Furthermore, the particular features, structures, materials or characteristics described may be combined in any suitable manner in any one or more embodiments or examples. Furthermore, those skilled in the art may combine and combine the different embodiments or examples described in this specification, as well as the features of the different embodiments or examples, without conflicting each other.
尽管上面已经示出和描述了本发明的实施例,可以理解的是,上述实施例是示例性的,不能理解为对本发明的限制,本领域的普通技术人员在本发明的范围内可以对上述实施例进行变化、修改、替换和变型。Although the embodiments of the present invention have been shown and described above, it should be understood that the above-mentioned embodiments are exemplary and should not be construed as limiting the present invention. Embodiments are subject to variations, modifications, substitutions and variations.

Claims (25)

  1. 一种对动物受精卵进行电转染基因编辑的方法,其特征在于,包括:A method for electrotransfection gene editing of animal fertilized eggs, characterized in that it comprises:
    (1)选择S期以前的动物受精卵进行透明带弱化处理;(1) Select animal fertilized eggs before S stage to weaken the zona pellucida;
    (2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,其中,所述外源物质包括Cas9蛋白和sgRNA。(2) After mixing the exogenous substance with the zygote weakened by the zona pellucida, electroporation transfection is performed, wherein the exogenous substance includes Cas9 protein and sgRNA.
  2. 根据权利要求1所述的方法,其特征在于,所述动物为哺乳动物。The method of claim 1, wherein the animal is a mammal.
  3. 根据权利要求1所述的方法,其特征在于,所述动物包括啮齿类动物、犬、猫、兔、猴。The method of claim 1, wherein the animals comprise rodents, dogs, cats, rabbits, and monkeys.
  4. 根据权利要求3所述的方法,其特征在于,所述动物包括小鼠和大鼠。The method of claim 3, wherein the animals comprise mice and rats.
  5. 根据权利要求1所述的方法,其特征在于,所述动物受精卵处于G1期。The method of claim 1, wherein the fertilized egg of the animal is in the G1 phase.
  6. 根据权利要求1所述的方法,其特征在于,在受精后10小时内,完成所述电穿孔转染处理。The method of claim 1, wherein the electroporation transfection process is completed within 10 hours after fertilization.
  7. 根据权利要求1所的方法,其特征在于,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触0~40秒钟进行的。The method according to claim 1, wherein the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with a table solution for 0 to 40 seconds.
  8. 根据权利要求7所述的方法,其特征在于,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触5秒钟进行的。8. The method of claim 7, wherein the zona pellucida weakening treatment is performed by contacting the fertilized egg cells of the animal with a bench top solution for 5 seconds.
  9. 根据权利要求1所述的方法,其特征在于,按照重量,所述外源物质中所述Cas9蛋白的用量是sgRNA用量的2~6倍。The method according to claim 1, wherein the amount of the Cas9 protein in the exogenous material is 2-6 times the amount of the sgRNA by weight.
  10. 根据权利要求1所述的方法,其特征在于,按照重量,所述外源物质中所述Cas9蛋白的用量是sgRNA用量的4倍。The method according to claim 1, wherein the amount of the Cas9 protein in the exogenous material is 4 times the amount of the sgRNA by weight.
  11. 根据权利要求1所述的方法,其特征在于,所述外源物质包括:The method of claim 1, wherein the exogenous substance comprises:
    至少一种sgRNA,所述至少一种sgRNA分别针对不同的靶点;和at least one sgRNA, the at least one sgRNA is directed against different targets; and
    至少一种与所述sgRNA对应的ssODN,所述ssODN的序列是基于所述靶点两侧预定长度而确定的。At least one ssODN corresponding to the sgRNA, the sequence of the ssODN is determined based on a predetermined length on both sides of the target.
  12. 根据权利要求11所述的方法,其特征在于,所述外源物质包括2~12种sgRNA。The method of claim 11, wherein the exogenous substance comprises 2-12 sgRNAs.
  13. 根据权利要求11所述的方法,其特征在于,基于10微升的电转染预混液,每种sgRNA的用量为1微克,所述Cas9蛋白的用量为所至少一种sgRNA总量的2~6倍。The method according to claim 11, wherein, based on 10 microliters of electrotransfection premix, the dosage of each sgRNA is 1 microgram, and the dosage of the Cas9 protein is 2-2 to the total amount of the at least one sgRNA. 6 times.
  14. 根据权利要求13所述的方法,其特征在于,基于10微升的电转染预混液,所述Cas9蛋白的用量不超过20微克,优选不超过16微克。The method according to claim 13, characterized in that, based on 10 microliters of electrotransfection premix, the dosage of the Cas9 protein is not more than 20 micrograms, preferably not more than 16 micrograms.
  15. 根据权利要求1所述的方法,其特征在于,所述电穿孔转染处理采用5~10次脉冲。The method according to claim 1, wherein the electroporation transfection treatment adopts 5-10 pulses.
  16. 根据权利要求1所述的方法,其特征在于,所述电穿孔转染处理采用8次脉冲。The method according to claim 1, wherein the electroporation transfection treatment adopts 8 pulses.
  17. 一种构建突变受精卵细胞的方法,其特征在于,包括:A method for constructing mutant fertilized egg cells, comprising:
    (1)对处于S期以前的动物受精卵进行透明带弱化处理;(1) To weaken the zona pellucida of animal fertilized eggs before S phase;
    (2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,其中,所述外源物质包括Cas9蛋白和至少一种sgRNA,基于重量,所述Cas9蛋白与所述 至少一种sgRNA重量的比例为2~6:1。(2) After mixing the exogenous material with the zygote of the animal weakened by the zona pellucida treatment, electroporation transfection is carried out, wherein the exogenous material includes Cas9 protein and at least one sgRNA, and the Cas9 protein is based on weight. The weight ratio to the at least one sgRNA is 2-6:1.
  18. 根据权利要求17所述的方法,其特征在于,所述Cas9蛋白与所述至少一种sgRNA重量的比例为4:1。The method of claim 17, wherein the weight ratio of the Cas9 protein to the at least one sgRNA is 4:1.
  19. 一种构建突变受精卵细胞的方法,所述突变受精卵细胞为纯合HDR受精卵细胞,其特征在于,所述方法包括:A method for constructing a mutant fertilized egg cell, wherein the mutant fertilized egg cell is a homozygous HDR fertilized egg cell, wherein the method comprises:
    (1)对处于S期以前的动物受精卵进行透明带弱化处理;(1) The zona pellucida weakening treatment is performed on the fertilized eggs of animals before the S phase;
    (2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,以便获得经过转染的受精卵细胞,其中,所述外源物质包括Cas9蛋白、至少一种sgRNA和至少一种与所述sgRNA对应的ssODN,其中,基于重量,所述Cas9蛋白与所述至少一种sgRNA重量的比例为2~6:1;和(2) after mixing the exogenous material with the animal fertilized egg weakened by the zona pellucida, electroporation transfection is performed to obtain the transfected fertilized egg cell, wherein the exogenous material includes Cas9 protein, at least one sgRNA and at least one ssODN corresponding to said sgRNA, wherein, on a weight basis, the weight ratio of said Cas9 protein to said at least one sgRNA is 2-6:1; and
    (3)从所述经过转染的受精卵细胞中选择所述纯合HDR受精卵细胞,(3) selecting the homozygous HDR fertilized ovum from the transfected fertilized ovum,
    可选的,所述Cas9蛋白与所述至少一种sgRNA重量的比例为4:1;Optionally, the weight ratio of the Cas9 protein to the at least one sgRNA is 4:1;
    可选的,所述外源物质包括:Optionally, the exogenous material includes:
    1~2种sgRNA;以及1-2 sgRNAs; and
    1~2种与所述sgRNA对应的ssODN。1-2 kinds of ssODN corresponding to the sgRNA.
  20. 一种构建突变受精卵细胞的方法,所述突变受精卵细胞为致死基因单缺失受精卵细胞,其特征在于,所述方法包括A method for constructing a mutant fertilized egg cell, wherein the mutant fertilized egg cell is a single-deletion fertilized egg cell of a lethal gene, wherein the method comprises the following steps:
    (1)对处于S期以前的动物受精卵进行透明带弱化处理;(1) To weaken the zona pellucida of animal fertilized eggs before S phase;
    (2)将外源物质与经过透明带弱化处理的动物受精卵混合后,进行电穿孔转染处理,以便获得经过转染的受精卵细胞,其中,所述外源物质包括Cas9蛋白、至少一种sgRNA和至少一种与所述sgRNA对应的ssODN,其中,基于重量,所述Cas9蛋白与所述至少一种sgRNA重量的比例为2~6:1;和(2) after mixing the exogenous material with the animal fertilized egg weakened by the zona pellucida, electroporation transfection is performed to obtain the transfected fertilized egg cell, wherein the exogenous material includes Cas9 protein, at least one sgRNA and at least one ssODN corresponding to said sgRNA, wherein, on a weight basis, the weight ratio of said Cas9 protein to said at least one sgRNA is 2-6:1; and
    (3)从所述经过转染的受精卵细胞中选择所述致死基因单缺失受精卵细胞,(3) selecting the lethal gene single deletion fertilized ovum from the transfected fertilized ovum,
    其中,所述至少一种sgRNA和所述ssODN是基于致死基因确定的;wherein, the at least one sgRNA and the ssODN are determined based on lethal genes;
    可选的,所述Cas9蛋白与所述至少一种sgRNA重量的比例为4:1;Optionally, the weight ratio of the Cas9 protein to the at least one sgRNA is 4:1;
    可选的,所述外源物质包括:Optionally, the exogenous material includes:
    1~2种sgRNA;以及1-2 sgRNAs; and
    1~2种与所述sgRNA对应的ssODN。1-2 kinds of ssODN corresponding to the sgRNA.
  21. 一种构建突变动物的方法,其特征在于,包括:A method for constructing a mutant animal, comprising:
    (a)按照权利要求17~20任一项所述的方法,构建突变受精卵细胞;和(a) constructing mutant fertilized egg cells according to the method of any one of claims 17 to 20; and
    (b)培育所述突变受精卵细胞,以便获得所述突变动物。(b) growing the mutant fertilized egg cells to obtain the mutant animal.
  22. 一种构建动物模型的方法,其特征在于,A method of constructing an animal model, characterized in that,
    (i)基于预定疾病类型,确定与疾病关联基因相关的sgRNA以及任选的ssODN;(i) identifying sgRNAs and optional ssODNs associated with disease-associated genes based on a predetermined disease type;
    (ii)利用所sgRNA和Cas9蛋白,按照权利要求21所述的方法,构建动物模型。(ii) using the sgRNA and the Cas9 protein to construct an animal model according to the method of claim 21 .
  23. 突变动物或动物模型在筛选药物中的用途,所述突变动物是根据权利要求21所述的方法构建的,所述动物模型是根据权利要求22所述的方法构建的。Use of a mutant animal or an animal model for screening drugs, the mutant animal is constructed according to the method of claim 21 , and the animal model is constructed according to the method of claim 22 .
  24. 一种对动物受精卵进行透明带弱化处理的方法,其特征在于,包括:A method for weakening the zona pellucida of animal fertilized eggs, characterized in that it comprises:
    将处于S期以前的动物受精卵进行透明带弱化处理,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触0~40秒钟进行的。The zygote of the animal before the S phase is subjected to the weakening treatment of the zona pellucida, and the weakening treatment of the zona pellucida is carried out by contacting the fertilized egg cells of the animal with the table solution for 0 to 40 seconds.
  25. 根据权利要求24所述的方法,其特征在于,将处于G1期的动物受精卵进行透明带弱化处理,所述透明带弱化处理是通过使所述动物受精卵细胞与台式液接触5秒钟进行的。The method according to claim 24, wherein the zygote of the animal in the G1 stage is subjected to a zona weakening treatment by contacting the fertilized egg cells of the animal with a table solution for 5 seconds .
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