WO2021114156A1 - Petal purple spot protein and coding gene thereof - Google Patents

Petal purple spot protein and coding gene thereof Download PDF

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WO2021114156A1
WO2021114156A1 PCT/CN2019/124748 CN2019124748W WO2021114156A1 WO 2021114156 A1 WO2021114156 A1 WO 2021114156A1 CN 2019124748 W CN2019124748 W CN 2019124748W WO 2021114156 A1 WO2021114156 A1 WO 2021114156A1
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gene
protein
plant
cotton
petals
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French (fr)
Chinese (zh)
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梁成真
穆罕默德·阿里·阿比德
孟志刚
王远
张锐
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中国农业科学院生物技术研究所
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Priority to PCT/CN2019/124748 priority Critical patent/WO2021114156A1/en
Priority to CN201980005565.XA priority patent/CN111315764B/en
Publication of WO2021114156A1 publication Critical patent/WO2021114156A1/en

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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/415Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from plants
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    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8216Methods for controlling, regulating or enhancing expression of transgenes in plant cells
    • C12N15/8218Antisense, co-suppression, viral induced gene silencing [VIGS], post-transcriptional induced gene silencing [PTGS]
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/82Vectors or expression systems specially adapted for eukaryotic hosts for plant cells, e.g. plant artificial chromosomes (PACs)
    • C12N15/8241Phenotypically and genetically modified plants via recombinant DNA technology
    • C12N15/8242Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits
    • C12N15/8243Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine
    • C12N15/825Phenotypically and genetically modified plants via recombinant DNA technology with non-agronomic quality (output) traits, e.g. for industrial processing; Value added, non-agronomic traits involving biosynthetic or metabolic pathways, i.e. metabolic engineering, e.g. nicotine, caffeine involving pigment biosynthesis

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  • the invention belongs to the technical field of plant genetic engineering, and in particular relates to a petal purpurin; and also relates to a gene encoding the petal purpurin and its application.
  • the heterochromatic spots and stripes on the flowers, leaves, fruits and branches of plants are collectively called colorful spots, especially the colorful spots on the petals, which constitute the main component of the ornamental value of horticultural plants.
  • the colorful spots on the petals are divided into two categories: regular colorful spots and irregular colorful spots.
  • Regular colorful spots include garland, flower center (flower eye), flower spot, flower rib and There are many forms such as lace; irregular color spots refer to heterochromatic scattered dots or stripes with non-fixed patterns on the petals.
  • Regular colored spots are usually controlled by genes and can be passed on in accordance with hereditary rules during sexual crossing.
  • Cotton is an important fiber cash crop.
  • Upland cotton Gossypium hirsutum L.
  • sea island cotton Gossypium barbadense L.
  • upland cotton Gossypium hirsutum L.
  • sea island cotton Gossypium barbadense L.
  • the difference in chromosome structure causes significant differences in morphological characteristics, fiber quality, and adaptability between upland cotton and sea island cotton. For example, there are purple spots (purple spots for short) at the base of the petals of sea island cotton varieties, while most upland cotton varieties do not have purple spots at the base of the petals.
  • the inventors discovered that the purple spot at the base of the petals of the sea island cotton is controlled by a single dominant gene.
  • the present invention provides a petal purple spot protein named GhBM.
  • the protein is the following protein (1), (2) or (3):
  • a protein consisting of the amino acid sequence shown in SEQ ID No: 2;
  • amino acid sequence shown in SEQ ID No: 2 is a protein obtained by substitution, and/or deletion, and/or addition of one or several amino acid residues, and having the same function.
  • the present invention also provides the application of the above-mentioned protein in regulating and controlling purple spot of plant petals.
  • the plant refers to cotton or floral plants and the like.
  • the present invention also provides a gene encoding the petal purpurin, named GhBM, and the gene is a nucleic acid molecule as described in (a), (b), (c) or (d) as follows:
  • the present invention also provides a recombinant expression vector containing the above gene.
  • the expression vector refers to plant expression vectors such as pBI121, pCAMBIA1300, and pCAMBIA2300.
  • the present invention also provides microorganisms, cell lines or plants containing the above-mentioned genes or recombinant expression vectors.
  • the present invention also provides the application of the above-mentioned gene or recombinant expression vector in regulating and controlling purple spot of plant petals.
  • the plant refers to cotton or floral plants and the like.
  • the flower plant refers to gladiolus (Gladiolus gandavensis, also known as gladiolus), rose (Rosa rugosa Thunb.), carnation (Dianthus caryophyllus), dianthus (Dianthus chinensis L.), narcissus (Narcissus tazetta L. var.
  • oleander Narium indicum Mill.
  • dahlia Dahlia pinnata Cav.
  • five-color plum Liantana camara L.
  • canna Can indica L.
  • sunflower Helianthus annuus L.
  • a bunch of red (Salvia) splendens Ker-Gawler Celosia cristata L., Impatiens balsamina L., Scutellaria barbata D. Don, Amaranthus tricolor, Dendrathema morifolium (Ramat. ) Tzvel.), lotus (Nelumbo SP.) or water lily (Nymphaea L.), etc.
  • the present invention also provides a method for cultivating plant varieties with purple spots on petals, which comprises introducing the above-mentioned genes into target plants to obtain transgenic plants with purple spots on petals.
  • the target plants mentioned in the above methods refer to cotton or floral plants and the like.
  • the present invention has the advantages and beneficial effects as follows: (1).
  • the present invention provides single dominant gene control for the purple spot basal traits at the base of the sea island cotton petals. It also accurately locates the gene and obtains the nucleotide of the gene. The sequence provides a new source of genes for the gene transfer into flower plants through transgenic methods, and for the colorfulness of flower plants.
  • (2) The present invention clarifies that the purple spot traits at the base of the island cotton petals are controlled by a single dominant gene, which can be used as a marker shape for rapid identification and screening of sea-land hybrids and as a marker trait for identifying the purity of sea-land hybrids.
  • Figure 1 shows the phenotypic photos of the floral organs of the sea island cotton HaiR and the upland cotton P30A; among them, 1 is the upland cotton variety P30A, and B is the sea island cotton variety HaiR.
  • Figure 2 is the electrophoresis map of GhBM gene linkage marker screening; among them, 1 is the PCR amplification result of upland cotton P30A primer A07INS8; 2 is the PCR amplification result of sea island cotton HaiR primer A07INS8; 3 is the mixed pool of 24 F 2 single plants without purple spots The PCR amplification result of primer A07INS8; 4 is the PCR amplification result of upland cotton P30A primer A07INS13; 5 is the PCR amplification result of sea island cotton HaiR primer A07INS13; 6 is the primer A07INS13 of 24 F 2 generation single plant mixed pool without purple spot PCR amplification results.
  • Figure 3 is a schematic diagram of PCR amplification of GhBM gene linkage marker in F 2 generation population without purple spots; among them, 1 is the PCR amplification result of the HaiR primer A07DEL9 of sea island cotton; 2 is the PCR amplification result of the upland cotton P30A primer A07DEL9; 3-25 are The PCR amplification results of the primer A07DEL9 of 23 F 2 generation single plants without purple spots.
  • Figure 4 is the electrophoresis map of the GhBM gene linkage marker in the F 2 generation population without purple spots; among them, 1 is the PCR amplification result of the HaiR primer A07DEL11 of sea island cotton; 2 is the PCR amplification result of the upland cotton P30A primer A07DEL11; 3-25 are 23 strains The results of PCR amplification of primer A07DEL11 of F 2 mixed pool of single plant without purple spots.
  • Figure 5 is a photo of flower bud size at different sampling periods; 1 is the young bud period; 2 is the flower bud period; 3 is the flowering period.
  • Figure 6 is a histogram of the expression levels of GhBM gene in HaiR and P30A at different stages and different parts of petals; among them, 1 is the purple spot area at the young bud stage of HaiR, 2 is the purple spot area at the young bud stage of HaiR; 3 is the purple spot area at the flower bud stage of HaiR ; 4 is the area with no purple spots at the flower bud stage of HaiR; 5 is the area with purple spots at the flowering stage of HaiR; 6 is the area without purple spots at the flowering stage of HaiR; 7 is the area with purple spots at the young bud stage of P30A; 8 is the area without purple spots at the young bud stage of P30A; 9 is the area without purple spots at the young bud stage of P30A. Purple spot area during the P30A bud stage; 10 is the P30A flower bud stage without purple spot; 11 is the P30A bloom stage purple spot area; 12 is the P30A bloom stage without purple spot area;
  • Figure 7 is a bar graph of fluorescence quantitative PCR detection of GhBM gene expression in sea island cotton HaiR that inhibits GhBM gene; where 1 is HaiR-CK; 2 is HaiR-BMKO1; 3 is HaiR-BMKO2; 4 is HaiR-BMKO3.
  • Figure 8 The phenotype of the young bud petals of the GhBM gene suppressed in the sea island cotton HaiR; 1 is HaiR-CK; 2 is HaiR-BMKO.
  • Figure 9 is a phenotype photograph of the petals at the flowering stage of the GhBM gene suppressed in the sea island cotton HaiR; 1 is HaiR-CK; 2 is HaiR-BMKO.
  • TRV-00 vector and Agrobacterium GV3101 are described in the article "Liang, C et al. (2016) GhABF2, abZIP transcription factor, confers drought and salary tolerance in cotton (Gossypium hirsutum L.). Sci Rep, 6,35040.”.
  • Test materials Upland cotton variety P30A, there is no purple variegation at the base of the petal (hereinafter referred to as "petal purple patch”) (see Figure 1); the sea island cotton variety HaiR (formerly known as ISR, the applicant self-bred island Cotton variety) (see Figure 1), with purple mottling at the base of the petals.
  • Test materials 5540 strains of the F 2 generation segregated population obtained in Example 1.
  • DNA extraction using DNAsecure Plant Kit (purchased from Tiangen Biochemical Technology (Beijing) Co., Ltd.) and extracting genomic DNA according to the method provided in its manual.
  • the above PCR amplification the polymorphic primers used (see Table 2), using 2 ⁇ Taq PCR StarMix with Loading Dye reagent (purchased from Beijing Kangrun Chengye Biotechnology Co., Ltd.) for PCR amplification.
  • the PCR reaction system (20 ⁇ l) is: 1 ⁇ l of genomic DNA, 10 ⁇ l of PCR Mix, 1 ⁇ l of upstream primer, 1 ⁇ l of downstream primer, and 7 ⁇ l of ddH 2 O.
  • the PCR reaction program is: 94°C for 10 minutes; 94°C for 15 seconds, 15 seconds according to primer annealing temperature, 72°C for 1 minute, 35 cycles; 72°C for 10 minutes, 16°C hold.
  • the obtained PCR amplification products were detected by 1% agarose gel electrophoresis.
  • the above-mentioned PCR amplification the polymorphic primers used (see Table 2), using 2 ⁇ Taq PCR StarMix with Loading Dye reagent (purchased from Beijing Kangrun Chengye Biotechnology Co., Ltd.) for PCR amplification.
  • the PCR reaction system is: DNA 1 ⁇ l, PCR Mix 10 ⁇ l, primer F 1 ⁇ l, primer R 1 ⁇ l, ddH 2 O 7 ⁇ l, and a total volume of 20 ⁇ l.
  • the PCR reaction program is: 94°C for 10 minutes; 94°C for 15 seconds, 15 seconds according to primer annealing temperature setting, 72°C for 1 minute, 35 cycles; 72°C for 10 minutes, kept at 16°C.
  • the obtained PCR amplification products were detected by 1% agarose gel electrophoresis.
  • G7 the G7 gene encodes an R2R3MYB transcription factor.
  • R2R3MYB transcription factors regulate the color formation of plant flowers, fruits, leaves, etc. (Cao X et al, J Exp Bot, 2017, 68, 5745-5758). Therefore, It is speculated that G7 gene is the most likely candidate gene to regulate petal purpura.
  • Test materials Flowers of upland cotton P30A and sea island cotton HaiR at different developmental stages, and different parts of the petals.
  • EASYspin plant ultrapure RNA rapid extraction kit purchased from Yuan Pinghao (Beijing) Biotechnology Co., Ltd. was used for RNA extraction.
  • the specific operations are as follows:
  • Reverse transcription system (20 ⁇ l): (RNA 3 ⁇ l, Oligo dT 1 ⁇ l, RNase-free water 4 ⁇ l) Preheat at 65°C for 5min, TransScript RT/R1 enzyme mix 1 ⁇ l, gDNA Remove 1 ⁇ l, 2 ⁇ TS Reaction Mix 10 ⁇ l.
  • the specific detection method, data processing, internal reference primer sequence and petal purple spot gene detection primer sequence are as follows:
  • the primer sequence for amplifying the internal reference ACTIN7 is:
  • ACTIN7 upstream primer 5'-CTCTCTCTGTATGCCAGTGGTC-3';
  • ACTIN7 downstream primer 5'-TTGTCCGTCAGGCAACTCATAG-3'.
  • the primer sequence for amplifying GhBM is:
  • GhBM gene upstream primer 5'-ACGAACAGCAAACGATGTGA-3' (SEQ ID No. 3);
  • Downstream primer of GhBM gene 5'-CTATTGTTGCCGCTGTCAGA-3' (SEQ ID No. 4).
  • the PCR reaction system (20 ⁇ l) is: cDNA 1 ⁇ l, KOD SYBR qPCR MIX 10 ⁇ l, primer F 0.5 ⁇ l, primer R 0.5 ⁇ l, and ddH 2 O 8 ⁇ l.
  • the PCR reaction program is: 98°C for 2min; 98°C for 10s, 60°C for 10s, 68°C for 30s, 40 cycles; 95°C for 15s, 60°C for 15s, 95°C for 10s.
  • Test materials Sea island cotton variety HaiR, VIGS interference expression vector and Agrobacterium strain GV3101 (preserved by the applicant's laboratory).
  • Primer design Find a specific segment in the coding region of the GhBM gene to design primers VRB-F and VRB-R.
  • the primer sequences are:
  • VRB-F 5'-gtca ggatcc AAGGGAAATGGCATCAAGTG-3' (SEQ ID No. 5) (the underlined and italicized part is the recognition site of BamHI);
  • VRB-R 5'- ggtacc gacCGGGTTCGAAGTTTTACTGG-3' (SEQ ID No. 6) (underlined and italicized is the recognition site of Kpn I).
  • step (1) using the cDNA obtained in step (1) as a template, and VRB-F and VRB-R as primers for PCR amplification, a DNA fragment of 348 bp is obtained, and the PCR product obtained is purified and sequenced.
  • the obtained fragment is The DNA fragment in sequence 1 of the sequence listing.
  • the construction of the aforementioned recombinant plasmid TRVGhBM can also use the artificially synthesized petal purple spot gene shown in sequence 1 of the sequence table as a template.
  • the recombinant plasmid TRVGhBM constructed in step (2) was introduced into the sea island cotton variety HaiR through Agrobacterium GV3101. For specific transformation and screening methods, see “Liang, C et al. Sci Rep, 2016. (6), 35040.”. At the same time, a control of TRV-00 and TRVGbCLA1 transferred into the empty carrier (gifted by the laboratory of Professor Zhang Xianlong of Huazhong Agricultural University) was set up.
  • transiently expressed transgenic cotton plants were obtained, namely the sea island cotton plants transformed into the TRVGhBM vector, collectively referred to as HaiR-BMKO, and the 3 plants obtained were specifically named HaiR-BMKO1, HaiR-BMKO2 and HaiR-BMKO3; those transformed into TRVGbCLA1
  • HaiR-CLAKO the sea island cotton plant transferred into the TRV-00 empty carrier was named HaiR-CK.
  • HaiR-BMKO cotton petal base development was not affected in any way.
  • HaiR-BMKO interference cotton lines the development of purple spots at the petal base at the young bud stage was significantly inhibited or even disappeared (see Figure 8);
  • HaiR-BMKO did not observe the appearance of purple spots (see Figure 9). It shows that the GhBM gene is a gene that controls the formation of purple spots at the base of the petals.

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Abstract

Provided is a petal purple spot protein, the protein comprising the amino acid sequence shown in SEQ ID No. 1. Also provided is a gene encoding a protein comprising the nucleotide sequence shown in SEQ ID No. 2. Further provided is an application of the protein and the coding gene thereof in regulating purple spot traits of plant petals. The present invention confirms that the purple spot trait in petals is controlled by a single dominant gene. The purple spot trait in petals can be used as a marker trait for sea-land hybrids. The gene can also be transferred into floral plants by transgenic methods, providing a novel gene source for expanding the variety of floral plants.

Description

一种花瓣紫斑蛋白及其编码基因Petal purpurin and its coding gene 技术领域Technical field
本发明属于植物基因工程技术领域,具体涉及一种花瓣紫斑蛋白;还涉及该花瓣紫斑蛋白的编码基因及其应用。The invention belongs to the technical field of plant genetic engineering, and in particular relates to a petal purpurin; and also relates to a gene encoding the petal purpurin and its application.
背景技术Background technique
植物的花、叶、果实和枝干等部位的异色斑点、条纹等统称为彩斑,尤其是花瓣上的彩斑,是构成园艺植物观赏价值的主要组成部分。根据花斑在花瓣上大小、形态和位置的不同,花瓣上的彩斑分为规则彩斑和不规则彩斑两大类,规则彩斑包括花环、花心(花眼)、花斑、花肋和花边等多种形式;不规则彩斑是指花瓣上具有的非固定图案的异色散点或条纹等。规则彩斑通常由基因控制,能在有性杂交过程中按照遗传规律进行遗传传递。The heterochromatic spots and stripes on the flowers, leaves, fruits and branches of plants are collectively called colorful spots, especially the colorful spots on the petals, which constitute the main component of the ornamental value of horticultural plants. According to the size, shape and position of the petals, the colorful spots on the petals are divided into two categories: regular colorful spots and irregular colorful spots. Regular colorful spots include garland, flower center (flower eye), flower spot, flower rib and There are many forms such as lace; irregular color spots refer to heterochromatic scattered dots or stripes with non-fixed patterns on the petals. Regular colored spots are usually controlled by genes and can be passed on in accordance with hereditary rules during sexual crossing.
棉花是重要的纤维经济作物,陆地棉(Gossypium hirsutum L.)和海岛棉(Gossypium barbadense L.)是两种主要栽培棉花。虽然二者均由二倍体亚洲棉(A基因组)和雷蒙德氏棉(D基因组)进行种间杂交而形成的异源四倍体棉种,但是在自然选择和人工驯化过程中形成的染色体结构上的差异,使陆地棉和海岛棉之间在形态特征、纤维品质、适应性等存在显著差异。如海岛棉品种的花瓣基部都存在紫色花斑(简称紫斑),而绝大部分陆地棉品种的花瓣基部都没有紫斑。Cotton is an important fiber cash crop. Upland cotton (Gossypium hirsutum L.) and sea island cotton (Gossypium barbadense L.) are two main cultivated cottons. Although both are heterotetraploid cotton species formed by interspecific hybridization between diploid Asian cotton (A genome) and Raymond cotton (D genome), they were formed during natural selection and artificial domestication. The difference in chromosome structure causes significant differences in morphological characteristics, fiber quality, and adaptability between upland cotton and sea island cotton. For example, there are purple spots (purple spots for short) at the base of the petals of sea island cotton varieties, while most upland cotton varieties do not have purple spots at the base of the petals.
目前,对海岛棉花瓣紫斑的遗传调控尚不清楚。At present, the genetic regulation of the purple spot of the sea island cotton petal is still unclear.
发明内容Summary of the invention
本发明人研究发现,海岛棉的花瓣基部紫斑性状由单显性基因控制。The inventors discovered that the purple spot at the base of the petals of the sea island cotton is controlled by a single dominant gene.
为了利用海岛棉的花瓣基部紫斑性状,本发明提供一种花瓣紫斑蛋白,命名为GhBM,所述的蛋白是如下(1)、(2)或(3)的蛋白质:In order to take advantage of the purple spot characteristics of the petal base of the sea island cotton, the present invention provides a petal purple spot protein named GhBM. The protein is the following protein (1), (2) or (3):
(1)由SEQ ID No:2所示的氨基酸序列组成的蛋白质;(1) A protein consisting of the amino acid sequence shown in SEQ ID No: 2;
(2)SEQ ID No:2所示的氨基酸序列经过一个或几个氨基酸残基的取代、和/或缺失、和/或添加得到的、且具有相同功能的蛋白质。(2) The amino acid sequence shown in SEQ ID No: 2 is a protein obtained by substitution, and/or deletion, and/or addition of one or several amino acid residues, and having the same function.
(3)与SEQ ID No:2所示的氨基酸序列具有90%以上同一性、且具有 相同功能的蛋白质。(3) A protein that has more than 90% identity with the amino acid sequence shown in SEQ ID No: 2 and has the same function.
本发明还提供了上述蛋白在调控植物花瓣紫斑上的应用。The present invention also provides the application of the above-mentioned protein in regulating and controlling purple spot of plant petals.
所述植物是指棉花或花卉植物等。The plant refers to cotton or floral plants and the like.
本发明还提供了编码上述花瓣紫斑蛋白的基因,命名为GhBM,所述的基因为如下(a)、(b)、(c)或(d)所述的核酸分子:The present invention also provides a gene encoding the petal purpurin, named GhBM, and the gene is a nucleic acid molecule as described in (a), (b), (c) or (d) as follows:
(a)由SEQ ID No:1所示的核苷酸序列组成;(a) Consists of the nucleotide sequence shown in SEQ ID No: 1;
(b)与SEQ ID No:1所示的核苷酸序列具有90%以上的同一性,且编码相同功能蛋白的核苷酸序列;(b) A nucleotide sequence that has more than 90% identity with the nucleotide sequence shown in SEQ ID No: 1 and encodes the same functional protein;
(c)与SEQ ID No:1所示的核苷酸序列具有95%以上同一性、且编码相同功能蛋白的核苷酸序列;(c) A nucleotide sequence that has more than 95% identity with the nucleotide sequence shown in SEQ ID No: 1 and encodes the same functional protein;
(d)在严格条件下与(a)、(b)或(c)所限定的核苷酸序列杂交、且编码相同功能蛋白的核苷酸序列。(d) A nucleotide sequence that hybridizes to the nucleotide sequence defined in (a), (b) or (c) under stringent conditions and encodes the same functional protein.
本发明还提供了含有上述基因的重组表达载体。The present invention also provides a recombinant expression vector containing the above gene.
所述的表达载体指pBI121、pCAMBIA1300、pCAMBIA2300等植物表达载体。The expression vector refers to plant expression vectors such as pBI121, pCAMBIA1300, and pCAMBIA2300.
本发明还提供了含有上述基因或重组表达载体的微生物、细胞系或植物等。The present invention also provides microorganisms, cell lines or plants containing the above-mentioned genes or recombinant expression vectors.
本发明还提供了上述基因或重组表达载体在调控植物花瓣紫斑上的应用。The present invention also provides the application of the above-mentioned gene or recombinant expression vector in regulating and controlling purple spot of plant petals.
所述的植物是指棉花或花卉植物等。The plant refers to cotton or floral plants and the like.
所述的花卉植物是指唐菖蒲(Gladiolus gandavensis,又名剑兰)、玫瑰(Rosa rugosa Thunb.)、康乃馨(Dianthus caryophyllus)、石竹(Dianthus chinensis L.)、水仙(Narcissus tazetta L.var.chinensis Roem)、月季(Rosa chinensis Jacq)、郁金香(Tulipa gesneriana L.)、玉兰(Magnolia denudata Desr)、牡丹(Paeonia suffruticosa Andr.)、芍药(Paeonia lactiflora Pall.)、丁香(Syringa Linn)、紫荆(Cercis chinensis)、仙客来(Cyclamen persicum Mill.)、风信子(Hyacinthus orientalis L.)、马蹄莲(Zantedeschia aethiopica(L.)Spreng.)、长春菊、天竺葵(Pelargonium hortorum)、报春花(Primula malacoides Franch.)、瓜叶菊(Pericallis hybrida)、矮牵牛(Petunia hybrida)、虞美人(Papaver rhoeas L.)、金鱼草(Antirrhinum majus L.)、扶桑(Hibiscus rosa-sinensis)、木芙蓉(Hibiscus mutabilis Linn.)、夹竹桃(Nerium indicum Mill.)、 大丽花(Dahlia pinnata Cav.)、五色梅(Lantana camara L.)、美人蕉(Canna indica L.)、向日葵(Helianthus annuus L.)、一串红(Salvia splendens Ker-Gawler)、鸡冠花(Celosia cristata L.)、凤仙花(Impatiens balsamina L.)、半枝莲(Scutellaria barbata D.Don)、雁来红(Amaranthus tricolor)、菊花(Dendranthema morifolium(Ramat.)Tzvel.)、荷花(Nelumbo SP.)或睡莲(Nymphaea L.)等之一种。The flower plant refers to gladiolus (Gladiolus gandavensis, also known as gladiolus), rose (Rosa rugosa Thunb.), carnation (Dianthus caryophyllus), dianthus (Dianthus chinensis L.), narcissus (Narcissus tazetta L. var. chinensis) Roem), rose (Rosa chinensis Jacq), tulip (Tulipa gesneriana L.), magnolia (Magnolia denudata Desr), peony (Paeonia suffruticosa Andr.), peony (Paeonia lactiflora Pall.), lilac (Syringa (Cinn)), Bauhinia chinensis), Cyclamen (Cyclamen persicum Mill.), Hyacinth (Hyacinthus Orientalis L.), Calla lily (Zantedeschia aethiopica (L.) Spreng.), Perennial chrysanthemum, Geranium (Pelargonium hortorum), Primula (Primula Ranchalacoides) .), Cineraria hybrida (Pericallis hybrida), Petunia hybrida (Petunia hybrida), Poppy (Papaver rhoeas L.), Snapdragon (Antirrhinum majus L.), Hibiscus (Hibiscus rosa-sinensis), Hibiscus (Hibiscus mutabilis) Linn. ), oleander (Nerium indicum Mill.), dahlia (Dahlia pinnata Cav.), five-color plum (Lantana camara L.), canna (Canna indica L.), sunflower (Helianthus annuus L.), a bunch of red (Salvia) splendens Ker-Gawler, Celosia cristata L., Impatiens balsamina L., Scutellaria barbata D. Don, Amaranthus tricolor, Dendrathema morifolium (Ramat. ) Tzvel.), lotus (Nelumbo SP.) or water lily (Nymphaea L.), etc.
本发明还提供了一种培育花瓣具有紫斑的植物品种的方法,包括向目的植物中导入上述基因,得到花瓣具有紫斑的转基因植物。The present invention also provides a method for cultivating plant varieties with purple spots on petals, which comprises introducing the above-mentioned genes into target plants to obtain transgenic plants with purple spots on petals.
上述方法中所述的目的植物是指棉花或花卉植物等。The target plants mentioned in the above methods refer to cotton or floral plants and the like.
本发明具有的优点和有益效果为:(1)、本发明提供了海岛棉花瓣基部紫斑基性状为单显性基因控制,还对该基因进行了准确定位,并获得了该基因的核苷酸序列,为通过转基因方法将该基因转育到花卉植物中,为花卉植物的丰富多彩提供一种新的基因来源。(2)、本发明明确了海岛棉花瓣基部紫斑性状受单显性基因控制,可作为快速鉴定和筛选海陆杂交种标记形状、以及作为鉴定海陆杂交种纯度的标记性状。The present invention has the advantages and beneficial effects as follows: (1). The present invention provides single dominant gene control for the purple spot basal traits at the base of the sea island cotton petals. It also accurately locates the gene and obtains the nucleotide of the gene. The sequence provides a new source of genes for the gene transfer into flower plants through transgenic methods, and for the colorfulness of flower plants. (2) The present invention clarifies that the purple spot traits at the base of the island cotton petals are controlled by a single dominant gene, which can be used as a marker shape for rapid identification and screening of sea-land hybrids and as a marker trait for identifying the purity of sea-land hybrids.
附图说明Description of the drawings
图1为海岛棉HaiR和陆地棉P30A花器官表型照片;其中1为陆地棉品种P30A,B为海岛棉品种HaiR。Figure 1 shows the phenotypic photos of the floral organs of the sea island cotton HaiR and the upland cotton P30A; among them, 1 is the upland cotton variety P30A, and B is the sea island cotton variety HaiR.
图2为GhBM基因连锁标记筛选电泳图谱;其中1为陆地棉P30A引物A07INS8的PCR扩增结果;2为海岛棉HaiR引物A07INS8的PCR扩增结果;3为24株F 2无紫斑单株混池引物A07INS8的PCR扩增结果;4为陆地棉P30A引物A07INS13的PCR扩增结果;5为海岛棉HaiR引物A07INS13的PCR扩增结果;6为24株F 2代无紫斑单株混池引物A07INS13的PCR扩增结果。 Figure 2 is the electrophoresis map of GhBM gene linkage marker screening; among them, 1 is the PCR amplification result of upland cotton P30A primer A07INS8; 2 is the PCR amplification result of sea island cotton HaiR primer A07INS8; 3 is the mixed pool of 24 F 2 single plants without purple spots The PCR amplification result of primer A07INS8; 4 is the PCR amplification result of upland cotton P30A primer A07INS13; 5 is the PCR amplification result of sea island cotton HaiR primer A07INS13; 6 is the primer A07INS13 of 24 F 2 generation single plant mixed pool without purple spot PCR amplification results.
图3为GhBM基因连锁标记在F 2代无紫斑群体PCR扩增示意图;其中1为海岛棉HaiR引物A07DEL9的PCR扩增结果;2为陆地棉P30A引物A07DEL9的PCR扩增结果;3-25为23株F 2代无紫斑单株混池引物A07DEL9的PCR扩增结果。 Figure 3 is a schematic diagram of PCR amplification of GhBM gene linkage marker in F 2 generation population without purple spots; among them, 1 is the PCR amplification result of the HaiR primer A07DEL9 of sea island cotton; 2 is the PCR amplification result of the upland cotton P30A primer A07DEL9; 3-25 are The PCR amplification results of the primer A07DEL9 of 23 F 2 generation single plants without purple spots.
图4为GhBM基因连锁标记在F 2代无紫斑群体电泳图谱;其中1为海岛棉HaiR引物A07DEL11的PCR扩增结果;2为陆地棉P30A引物A07DEL11的PCR扩增结果;3-25为23株F 2无紫斑单株混池引物A07DEL11的PCR扩增结果。 Figure 4 is the electrophoresis map of the GhBM gene linkage marker in the F 2 generation population without purple spots; among them, 1 is the PCR amplification result of the HaiR primer A07DEL11 of sea island cotton; 2 is the PCR amplification result of the upland cotton P30A primer A07DEL11; 3-25 are 23 strains The results of PCR amplification of primer A07DEL11 of F 2 mixed pool of single plant without purple spots.
图5为不同取样期花蕾大小照片;其中1为幼蕾期;2为花蕾期;3为开花期。Figure 5 is a photo of flower bud size at different sampling periods; 1 is the young bud period; 2 is the flower bud period; 3 is the flowering period.
图6为GhBM基因在HaiR和P30A中花瓣不同时期和花瓣不同部位表达量柱形图;其中1为HaiR幼蕾期紫斑区,2为HaiR幼蕾期无紫斑区;3为HaiR花蕾期紫斑区;4为HaiR花蕾期无紫斑区;5为HaiR开花期紫斑区;6为HaiR开花期无紫斑区;7为P30A幼蕾期紫斑区,8为P30A幼蕾期无紫斑区;9为P30A花蕾期紫斑区;10为P30A花蕾期无紫斑区;11为P30A开花期紫斑区;12为P30A开花期无紫斑区;Figure 6 is a histogram of the expression levels of GhBM gene in HaiR and P30A at different stages and different parts of petals; among them, 1 is the purple spot area at the young bud stage of HaiR, 2 is the purple spot area at the young bud stage of HaiR; 3 is the purple spot area at the flower bud stage of HaiR ; 4 is the area with no purple spots at the flower bud stage of HaiR; 5 is the area with purple spots at the flowering stage of HaiR; 6 is the area without purple spots at the flowering stage of HaiR; 7 is the area with purple spots at the young bud stage of P30A; 8 is the area without purple spots at the young bud stage of P30A; 9 is the area without purple spots at the young bud stage of P30A. Purple spot area during the P30A bud stage; 10 is the P30A flower bud stage without purple spot; 11 is the P30A bloom stage purple spot area; 12 is the P30A bloom stage without purple spot area;
图7为海岛棉HaiR中抑制GhBM基因的GhBM基因表达量的荧光定量PCR检测柱形图;其中1为HaiR-CK;2为HaiR-BMKO1;3为HaiR-BMKO2;4为HaiR-BMKO3.Figure 7 is a bar graph of fluorescence quantitative PCR detection of GhBM gene expression in sea island cotton HaiR that inhibits GhBM gene; where 1 is HaiR-CK; 2 is HaiR-BMKO1; 3 is HaiR-BMKO2; 4 is HaiR-BMKO3.
图8.为海岛棉HaiR中抑制GhBM基因幼蕾花瓣表型照片;其中1为HaiR-CK;2为HaiR-BMKO。Figure 8. The phenotype of the young bud petals of the GhBM gene suppressed in the sea island cotton HaiR; 1 is HaiR-CK; 2 is HaiR-BMKO.
图9为海岛棉HaiR中抑制GhBM基因开花期花瓣的表型照片;其中1为HaiR-CK;2为HaiR-BMKO。Figure 9 is a phenotype photograph of the petals at the flowering stage of the GhBM gene suppressed in the sea island cotton HaiR; 1 is HaiR-CK; 2 is HaiR-BMKO.
具体实施方式Detailed ways
以下通过实施例对本发明做进一步的说明,但是不对本发明的保护范围构成限制。The following examples further illustrate the present invention, but do not limit the protection scope of the present invention.
下述实施例中所用的实验方法如无特殊说明,均为常规方法。The experimental methods used in the following examples are conventional methods unless otherwise specified.
下述实施例中所用材料、试剂等,如无特殊说明,均可从商业途径获得。The materials, reagents, etc. used in the following examples can be obtained from commercial sources unless otherwise specified.
TRV-00载体和农杆菌GV3101记载于“Liang,C等.(2016)GhABF2,abZIP transcription factor,confers drought and salinity tolerance in cotton(Gossypium hirsutum L.).Sci Rep,6,35040.”一文。The TRV-00 vector and Agrobacterium GV3101 are described in the article "Liang, C et al. (2016) GhABF2, abZIP transcription factor, confers drought and salary tolerance in cotton (Gossypium hirsutum L.). Sci Rep, 6,35040.".
实施例1、海岛棉花瓣基部紫斑性状的遗传分析Example 1. Genetic analysis of the purple spot traits at the base of the petals of sea island cotton
(一)、试验材料:陆地棉品种P30A,花瓣基部没有紫色花斑(以下简称为“花瓣紫斑”)(见图1);海岛棉品种HaiR(曾用名:ISR,本申请人自育海岛棉品种)(见图1),花瓣基部有紫色花斑。(1) Test materials: Upland cotton variety P30A, there is no purple variegation at the base of the petal (hereinafter referred to as "petal purple patch") (see Figure 1); the sea island cotton variety HaiR (formerly known as ISR, the applicant self-bred island Cotton variety) (see Figure 1), with purple mottling at the base of the petals.
(二)、试验方法:(2) Test method:
以陆地棉品种P30A为母本、以海岛棉品种HaiR为父本杂交,得杂交F 1代;然后F 1代自交,得F 2代;在开花期,调查和统计F 1代和F 2代花瓣基部有 紫色花斑和无紫色花斑的单株数量。 Crossing the upland cotton variety P30A as the female parent and the sea island cotton variety HaiR as the male parent, the hybrid F 1 generation was obtained; then the F 1 generation was selfed to obtain the F 2 generation; in the flowering period, the F 1 generation and F 2 were investigated and counted The number of individual plants with purple variegation and no purple variegation at the base of the petals.
结果F 1代所有植株花瓣基部均有紫斑,说明花瓣紫斑性状由显性基因控制。在F 2代共调查5540个单株,结果(见表1)花瓣基部有紫斑的单株为4255株,花瓣基部无紫斑的单株为1285株,有紫斑:无紫斑的单株比例约为3:1,说明花瓣紫斑性状为单显性基因控制。将控制花瓣基部紫斑的基因命名为:GhBM。 Results All plants of F 1 generation had purple spots at the base of petals, indicating that the characteristics of petal purple spots were controlled by dominant genes. A total of 5540 individual plants were investigated in the F 2 generation, and the results (see Table 1) The number of individual plants with purple spots at the base of the petals was 4255, and the number of individual plants without purple spots at the base of the petals was 1285. The proportion of individual plants with purple spots: no purple spots was about 3:1, indicating that the petal purple spot is controlled by a single dominant gene. The gene that controls the purple spots at the base of the petals is named: GhBM.
表1海岛棉和陆地棉杂交F 2代花瓣基部紫斑性状分离比 Table 1 Segregation ratio of purple spot traits at the base of petals in F 2 generations of cross between sea island cotton and upland cotton
Figure PCTCN2019124748-appb-000001
Figure PCTCN2019124748-appb-000001
实施例2棉花花瓣紫斑GhBM基因的图位克隆Example 2 Map-based cloning of cotton petal purple spot GhBM gene
(一)试验材料:实施例1中所得的F 2代分离群体5540株。 (1) Test materials: 5540 strains of the F 2 generation segregated population obtained in Example 1.
(二)试验方法:(2) Test method:
(1)DNA提取,采用DNAsecure Plant Kit(购自天根生化科技(北京)有限公司)并按照其说明书提供的方法提取基因组DNA。(1) DNA extraction, using DNAsecure Plant Kit (purchased from Tiangen Biochemical Technology (Beijing) Co., Ltd.) and extracting genomic DNA according to the method provided in its manual.
(2)GhBM基因初定位:以F 2分离群体中无花瓣紫斑的48株棉花基因组DNA混池为模板,以本申请人开发的陆地棉和海岛棉之间的720对多态性引物为引物进行PCR扩增,进行GhBM基因的初步定位。 (2) Preliminary localization of GhBM gene: The mixed pool of 48 cotton genomic DNA without petal purple spots in the F 2 segregated population was used as a template, and 720 pairs of polymorphic primers between upland cotton and sea island cotton developed by the applicant were used as primers Carry out PCR amplification for preliminary localization of the GhBM gene.
上述PCR扩增:所用多态性引物(见表2),利用2×Taq PCR StarMix with Loading Dye试剂(购自北京康润诚业生物科技有限公司)进行PCR扩增。The above PCR amplification: the polymorphic primers used (see Table 2), using 2×Taq PCR StarMix with Loading Dye reagent (purchased from Beijing Kangrun Chengye Biotechnology Co., Ltd.) for PCR amplification.
所述PCR的反应体系(20μl)为:基因组DNA 1μl,PCR Mix 10μl,上游引物1μl,下游引物1μl,ddH 2O 7μl。所述的PCR反应程序为:94℃10min;94℃15s,根据引物退火温度设定15s,72℃1min,35个循环;72℃10min,16℃hold。将所得PCR扩增产物进行1%琼脂糖凝胶电泳检测。 The PCR reaction system (20 μl) is: 1 μl of genomic DNA, 10 μl of PCR Mix, 1 μl of upstream primer, 1 μl of downstream primer, and 7 μl of ddH 2 O. The PCR reaction program is: 94°C for 10 minutes; 94°C for 15 seconds, 15 seconds according to primer annealing temperature, 72°C for 1 minute, 35 cycles; 72°C for 10 minutes, 16°C hold. The obtained PCR amplification products were detected by 1% agarose gel electrophoresis.
结果(见图2)A07染色体的引物A07INS8和A07INS13与花瓣紫斑性状明显连锁。说明该基因位于A07染色体上。The results (see Figure 2) primers A07INS8 and A07INS13 of A07 chromosome were significantly linked to the petal purple spot. This indicates that the gene is located on chromosome A07.
(3)GhBM基因精细定位(3) Fine mapping of GhBM gene
从NCBI的SRA数据库(https://www.ncbi.nlm.nih.gov/sra)下载南京农业大学发布的海岛棉的全基因组重测序(WGS)数据,用NGSQCToolkit对下载得到的WGS数据进行过滤,排除测序质量低的序列,用BWA软件将海岛棉的测序比对到陆地棉的基因组上(南京农业大学发表的陆地棉基因组),用Pindel和Samtools软件查找海岛棉-陆地棉之间片段长度差异小于80bp的InDel位点,在每个多态性位点两侧设计引物,用TNT blast检测引物在基因组(NAU)上的匹配情况。利用设计出的多态性引物对(海陆)F 2代群体1285个无紫斑的单株进行PCR扩增,进一步的精细定位。 Download the whole genome resequencing (WGS) data of sea island cotton released by Nanjing Agricultural University from the SRA database of NCBI (https://www.ncbi.nlm.nih.gov/sra), and use NGSQCToolkit to filter the downloaded WGS data , Exclude the low-quality sequence, use BWA software to compare the sequencing of sea island cotton to the upland cotton genome (upland cotton genome published by Nanjing Agricultural University), use Pindel and Samtools software to find the fragment length between sea island cotton and upland cotton For InDel sites with a difference of less than 80bp, primers were designed on both sides of each polymorphic site, and TNT blast was used to detect the matching of the primers on the genome (NAU). The designed polymorphic primers were used to carry out PCR amplification on 1285 single plants without purple spots in the F 2 generation population (sea and land), and further fine positioning was performed.
上述的PCR扩增:所用多态性引物(见表2),利用2×Taq PCR StarMix with Loading Dye试剂(购自北京康润诚业生物科技有限公司)进行PCR扩增。The above-mentioned PCR amplification: the polymorphic primers used (see Table 2), using 2×Taq PCR StarMix with Loading Dye reagent (purchased from Beijing Kangrun Chengye Biotechnology Co., Ltd.) for PCR amplification.
所述PCR的反应体系为:DNA 1μl,PCR Mix 10μl,引物F 1μl,引物R 1μl,ddH 2O 7μl,总体积20μl。所述PCR的反应程序为:94℃10min;94℃15s,根据引物退火温度设定15s,72℃1min,35个循环;72℃10min,保持在16℃。将所得PCR扩增产物进行1%琼脂糖凝胶电泳检测。 The PCR reaction system is: DNA 1 μl, PCR Mix 10 μl, primer F 1 μl, primer R 1 μl, ddH 2 O 7 μl, and a total volume of 20 μl. The PCR reaction program is: 94°C for 10 minutes; 94°C for 15 seconds, 15 seconds according to primer annealing temperature setting, 72°C for 1 minute, 35 cycles; 72°C for 10 minutes, kept at 16°C. The obtained PCR amplification products were detected by 1% agarose gel electrophoresis.
表2图位克隆涉及的引物序列Table 2 Primer sequences involved in map-based cloning
Figure PCTCN2019124748-appb-000002
Figure PCTCN2019124748-appb-000002
Figure PCTCN2019124748-appb-000003
Figure PCTCN2019124748-appb-000003
表3图位克隆70kb内7个基因注释Table 3 Map-based cloning of 7 gene annotations within 70kb
基因编号Gene number 基因名称Gene name 基因描述Gene description
G1G1 bHLHbHLH 推定的转录因子bHLHPutative transcription factor bHLH
G2G2 NANA 未知unknown
G3G3 HMGSHMGS 羟甲基戊二酰辅酶A合酶Hydroxymethylglutaryl-CoA synthase
G4G4 CMLCML 可能的钙结合蛋白CMLPossible Calbindin CML
G5G5 At1gAt1g 可能的果糖激酶-6,叶绿体Possible fructokinase-6, chloroplast
G6G6 CMLCML 可能的钙结合蛋白CMLPossible Calbindin CML
G7G7 MYBMYB 转录因子MYBTranscription factor MYB
结果:进一步的单株PCR扩增分析表明,控制海岛棉花瓣基部紫斑的基因定位于A07INS8和A07INS13两个多态性引物之间(引物序列见表2)。通过扩大F 2群体数量,开发CAPS(Cleaved amplified polymorphic sequences)引物(引物序列见表2),进一步精细定位,通过图位克隆将控制花瓣基部紫斑基因定位到A07INS10.3和A07Del10.1两个引物之间70kb范围内(见图3和图4)。根据CottonFGD(www.cottonfgd.org/)注释结果,该范围内有7个基因(见表3),依次命名为G1-G7。其中,G7基因编码一个R2R3MYB类转录因子,其他物种中R2R3MYB类转录因子调控植物花、果实、叶片等颜色的形成(Cao X et  al,J Exp Bot,2017,68,5745-5758),因此,推测G7基因是调节花瓣紫斑的最可能的候选基因。利用Clutal W软件比对分析,发现陆地棉和海岛棉之间G7基因编码区域存在一个SNP差异,导致编码蛋白的一个氨基酸残基由天冬氨酸(Asp,D)变成丙氨酸(Ala,A)。 Results: Further PCR amplification analysis of a single plant showed that the gene controlling the purple spot at the base of the sea island cotton petals was located between the two polymorphic primers A07INS8 and A07INS13 (see Table 2 for primer sequences). By expanding the number of F 2 populations, we developed CAPS (Cleaved amplified polymorphic sequences) primers (see Table 2 for primer sequences), and further fine-tuned the positioning. Through map-based cloning, the control petal base purple spot gene was mapped to the two primers A07INS10.3 and A07Del10.1 Within the range of 70kb (see Figure 3 and Figure 4). According to the annotation results of CottonFGD (www.cottonfgd.org/), there are 7 genes in this range (see Table 3), which are named G1-G7 in turn. Among them, the G7 gene encodes an R2R3MYB transcription factor. In other species, R2R3MYB transcription factors regulate the color formation of plant flowers, fruits, leaves, etc. (Cao X et al, J Exp Bot, 2017, 68, 5745-5758). Therefore, It is speculated that G7 gene is the most likely candidate gene to regulate petal purpura. Comparing and analyzing with the software of Clutal W, it is found that there is a SNP difference in the coding region of G7 gene between Gossypium hirsutum and Gossypium hirsutum, which causes an amino acid residue of the encoded protein to change from aspartic acid (Asp, D) to alanine (Ala ,A).
实施例3、棉花花瓣紫斑GhBM基因表达分析试验Example 3 Analysis of GhBM gene expression in cotton petal purplish spot
(一)试验材料:陆地棉P30A和海岛棉HaiR不同发育时期的花,以及花瓣的不同部位。(1) Test materials: Flowers of upland cotton P30A and sea island cotton HaiR at different developmental stages, and different parts of the petals.
(二)试验方法:(2) Test method:
1、RNA提取:1. RNA extraction:
用EASYspin植物超纯RNA快速提取试剂盒(购自原平皓(北京)生物技术有限公司)进行RNA的提取。具体操作如下:EASYspin plant ultrapure RNA rapid extraction kit (purchased from Yuan Pinghao (Beijing) Biotechnology Co., Ltd.) was used for RNA extraction. The specific operations are as follows:
a)2ml无菌RNA离心管中加入500μl裂解液RLT(已加β-巯基乙醇),再加入50μlPLANTaid,混匀备用;a) Add 500μl of Lysis Buffer RLT (with β-mercaptoethanol) to a 2ml sterile RNA centrifuge tube, then add 50μl PLANTaid, and mix well for later use;
b)取100mg棉花P30A或HaiR花瓣组织,液氮研磨成粉末状,加入550μl配制好的裂解液,立即旋涡震荡1min,室温下静置10min,使其充分裂解;b) Take 100mg of cotton P30A or HaiR petal tissue, grind it into powder with liquid nitrogen, add 550μl of the prepared lysis solution, immediately vortex for 1min, and let it stand for 10min at room temperature to make it fully lysed;
c)4℃,12000rpm离心10min,取500μl上清到新的1.5ml RNase-free离心管中;c) Centrifuge at 4°C at 12000rpm for 10min, and transfer 500μl of supernatant to a new 1.5ml RNase-free centrifuge tube;
d)加入0.5倍体积的无水乙醇(250μl),混匀;d) Add 0.5 times volume of absolute ethanol (250μl) and mix;
e)混合物加入到吸附柱RA中,4℃,12000rpm离心1min,弃废液;e) Add the mixture to the adsorption column RA, centrifuge at 12000 rpm at 4°C for 1 min, and discard the waste liquid;
f)加入2μl RNase inhibitor+5μl DNase+20μl DNA Buffer,室温静置10min,加入700μl去蛋白液RW1,室温放置30s,4℃,12000rpm离心1min,弃废液;f) Add 2μl RNase inhibitor+5μl DNase+20μl DNA Buffer, let stand at room temperature for 10 minutes, add 700μl protein-removing solution RW1, leave it at room temperature for 30s, centrifuge at 4℃, 12000rpm for 1min, discard the waste liquid;
g)加入500μl漂洗液RW(确认已事先加入无水乙醇),4℃,12000rpm离心1min,弃废液。重复洗涤一次;g) Add 500μl of rinsing solution RW (make sure to add absolute ethanol beforehand), centrifuge at 4°C, 12000rpm for 1min, and discard the waste solution. Repeat washing once;
h)将吸附柱RA放回收集管中,4℃,12000rpm空甩2min,取出吸附柱,放入一个新的1.5ml RNase-free离心管中,超净台中晾干至无酒精残留(5min);h) Put the adsorption column RA back into the collection tube at 4°C, 12000rpm for 2 minutes, take out the adsorption column, put it into a new 1.5ml RNase-free centrifuge tube, and dry in the ultra-clean table until there is no alcohol residue (5min) ;
i)往吸附柱的吸附膜中间滴加30μl RNase-free water(65℃预热),室温放置2min,4℃,12000rpm离心2min。(取2μl RNA,使用nano 仪器检测RNA浓度)。i) Add 30μl RNase-free water (preheated at 65°C) dropwise to the middle of the adsorption membrane of the adsorption column, leave it at room temperature for 2 minutes, and centrifuge at 4°C for 2 minutes at 12000 rpm. (Take 2μl RNA and use a nano instrument to detect RNA concentration).
(2)反转录为cDNA(2) Reverse transcription to cDNA
反转录体系(20μl):(RNA 3μl,Oligo dT 1μl,RNase-free water 4μl)65℃预热5min,TransScript RT/R1 enzyme mix 1μl,gDNA Remover 1μl,2×TS Reaction Mix 10μl。Reverse transcription system (20μl): (RNA 3μl, Oligo dT 1μl, RNase-free water 4μl) Preheat at 65°C for 5min, TransScript RT/R1 enzyme mix 1μl, gDNA Remove 1μl, 2×TS Reaction Mix 10μl.
PCR反应程序:42℃15min,85℃5s。PCR reaction program: 42°C for 15min, 85°C for 5s.
(3)实时荧光定量PCR(qRT-PCR)(3) Real-time fluorescent quantitative PCR (qRT-PCR)
具体检测方法、数据处理、内参引物序列以及花瓣紫斑基因检测引物序列如下:The specific detection method, data processing, internal reference primer sequence and petal purple spot gene detection primer sequence are as follows:
根据Bio-Rad公司提供的使用方法,在PCR体系中加入SYBR green Ⅰ荧光染料,在荧光定量PCR仪C1000 TM Thermal Cycler(CFX96 real-time system,Bio-Rad,USA)上检测G1-G7基因的表达情况;以棉花ACTIN7基因为内参,实验设三次重复。其中引物序列如下。 According to the usage method provided by Bio-Rad, SYBR green Ⅰ fluorescent dye was added to the PCR system, and the G1-G7 gene was detected on the fluorescent quantitative PCR instrument C1000 TM Thermal Cycler (CFX96 real-time system, Bio-Rad, USA) Expression situation: The cotton ACTIN7 gene was used as the internal control, and the experiment was set for three repetitions. The primer sequence is as follows.
其中,扩增内参ACTIN7的引物序列为:Among them, the primer sequence for amplifying the internal reference ACTIN7 is:
ACTIN7上游引物:5'-CTCTCTCTGTATGCCAGTGGTC-3';ACTIN7 upstream primer: 5'-CTCTCTCTGTATGCCAGTGGTC-3';
ACTIN7下游引物:5'-TTGTCCGTCAGGCAACTCATAG-3'。ACTIN7 downstream primer: 5'-TTGTCCGTCAGGCAACTCATAG-3'.
扩增GhBM的引物序列为:The primer sequence for amplifying GhBM is:
GhBM基因上游引物:5'-ACGAACAGCAAACGATGTGA-3'(SEQ ID No.3);GhBM gene upstream primer: 5'-ACGAACAGCAAACGATGTGA-3' (SEQ ID No. 3);
GhBM基因下游引物:5'-CTATTGTTGCCGCTGTCAGA-3'(SEQ ID No.4)。Downstream primer of GhBM gene: 5'-CTATTGTTGCCGCTGTCAGA-3' (SEQ ID No. 4).
数据处理采用Comparative Ct的方法,即Ct值为PCR管中荧光信号达到设定的域值时所经历的循环数,ΔCt=Ct(SAGs)-Ct(ACTIN1),以2 -ΔCt值衡量基因转录水平,对海岛棉和陆地棉中GhBM基因的表达进行分析 Data processing adopts the method of Comparative Ct, that is, the Ct value is the number of cycles experienced when the fluorescent signal in the PCR tube reaches the set threshold, ΔCt=Ct(SAGs)-Ct(ACTIN1), and the 2- ΔCt value is used to measure gene transcription Level, analysis of GhBM gene expression in sea island cotton and upland cotton
所述PCR的反应体系(20μl)为:cDNA 1μl,KOD SYBR qPCR MIX 10μl,引物F 0.5μl,引物R 0.5μl,ddH 2O 8μl。PCR的反应程序为:98℃2min;98℃10s,60℃10s,68℃30s,40个循环;95℃15s,60℃15s,95℃10s。 The PCR reaction system (20 μl) is: cDNA 1 μl, KOD SYBR qPCR MIX 10 μl, primer F 0.5 μl, primer R 0.5 μl, and ddH 2 O 8 μl. The PCR reaction program is: 98°C for 2min; 98°C for 10s, 60°C for 10s, 68°C for 30s, 40 cycles; 95°C for 15s, 60°C for 15s, 95°C for 10s.
结果(见图6)与陆地棉P30A相比较,GhBM基因在海岛棉HaiR花瓣基部紫斑部位表达量显著升高,而非紫斑部位表达量相对较低;而在P30A中,不同花期不同部位GhBM表达量均较低,甚至检测不到,说明GhBM基因是调控海岛棉花瓣基部紫斑的形成的基因。即GhBM基因在海岛棉HaiR花瓣基部表达量的升高导致了紫斑的形成。Results (see Figure 6) Compared with upland cotton P30A, the expression of GhBM gene in the purplish spots at the base of the sea-island cotton HaiR petals was significantly higher, while the expression in the non-purple spots was relatively low; while in P30A, the expression of GhBM in different parts of different flowering stages The amount is low, or even undetectable, indicating that the GhBM gene is a gene that regulates the formation of purple spots at the base of the island cotton petals. That is, the increase of GhBM gene expression in the base of the HaiR petals of sea island cotton led to the formation of purple spots.
实施例4、GhBM基因干涉表达试验Example 4. GhBM gene interference expression test
(一)试验材料:海岛棉品种HaiR,VIGS干扰表达载体和农杆菌菌株GV3101(本申请人实验室保藏)。(1) Test materials: Sea island cotton variety HaiR, VIGS interference expression vector and Agrobacterium strain GV3101 (preserved by the applicant's laboratory).
(二)试验方法:(2) Test method:
(1)海岛棉HaiR总RNA的提取及cDNA的获得参见实施例3所述方法。(1) Refer to the method described in Example 3 for the extraction of total RNA of sea island cotton HaiR and the acquisition of cDNA.
(2)重组表达载体VIGs-GhBM的构建(2) Construction of recombinant expression vector VIGs-GhBM
(a)引物设计:在GhBM基因的编码区找出一段特异片段设计引物VRB-F和VRB-R,所述的引物序列为:(a) Primer design: Find a specific segment in the coding region of the GhBM gene to design primers VRB-F and VRB-R. The primer sequences are:
VRB-F:5'-gtca ggatccAAGGGAAATGGCATCAAGTG-3'(SEQ ID No.5)(下划线斜体部分为BamHI的识别位点); VRB-F: 5'-gtca ggatcc AAGGGAAATGGCATCAAGTG-3' (SEQ ID No. 5) (the underlined and italicized part is the recognition site of BamHI);
VRB-R:5'- ggtaccgacCGGGTTCGAAGTTTTACTGG-3'(SEQ ID No.6)(下划线斜体部分为Kpn I的识别位点)。 VRB-R: 5'- ggtacc gacCGGGTTCGAAGTTTTACTGG-3' (SEQ ID No. 6) (underlined and italicized is the recognition site of Kpn I).
(b)PCR扩增:以步骤(1)所得cDNA为模板,以VRB-F和VRB-R为引物进行PCR扩增,得到348bp的DNA片段,将所得PCR产物纯化,并测序,所得片段为序列表序列1中的DNA片段。(b) PCR amplification: using the cDNA obtained in step (1) as a template, and VRB-F and VRB-R as primers for PCR amplification, a DNA fragment of 348 bp is obtained, and the PCR product obtained is purified and sequenced. The obtained fragment is The DNA fragment in sequence 1 of the sequence listing.
(c)用BamHI和Kpn I双酶切上述(b)所得的PCR产物,回收酶切片段,与经过BamHI和Kpn I双酶切的载体TRV-00骨架片段相连,得到重组质粒,即为所述VIGS干扰表达载体(TRVGhBM载体)。将所述重组质粒送样测序,测序表明在TRV载体的酶切位点BamHI和Kpn I之间插入了序列表中DNA片段,将该重组质粒命名为TRVGhBM。携带TRVGhBM基因片段的病毒在侵染棉花叶片后,可诱导棉花GhBM基因发生沉默,从而影响其调控花瓣基部紫斑发育的生物学功能。(c) Double digestion of the PCR product obtained in (b) with BamHI and Kpn I, recover the digested fragments, and connect them with the vector TRV-00 backbone fragment that has been digested with BamHI and Kpn I to obtain a recombinant plasmid. The VIGS interference expression vector (TRVGhBM vector). The recombinant plasmid was sent for sequencing, and the sequencing showed that the DNA fragment in the sequence table was inserted between the restriction sites BamHI and Kpn I of the TRV vector, and the recombinant plasmid was named TRVGhBM. After infecting cotton leaves, viruses carrying TRVGhBM gene fragments can induce the silencing of cotton GhBM genes, thereby affecting its biological function of regulating the development of purple spots at the base of petals.
上述重组质粒TRVGhBM的构建,也可以人工合成的序列表序列1所示的花瓣紫斑基因为模板。The construction of the aforementioned recombinant plasmid TRVGhBM can also use the artificially synthesized petal purple spot gene shown in sequence 1 of the sequence table as a template.
(3)GhBM基因的VIGS系统干涉棉花的获得(3) The VIGS system of GhBM gene interferes with the acquisition of cotton
将步骤(2)构建的重组质粒TRVGhBM,通过农杆菌GV3101导入到海岛棉品种HaiR中,具体的转化筛选方法参见“Liang,C等.Sci Rep,2016.(6),35040.”。同时设置转入空载体TRV-00和TRVGbCLA1(由华中农业大学张献龙教授实验室馈赠)的对照。最终获得三种瞬时表达的转基因棉花,即转入TRVGhBM载体的海岛棉植株,统称为HaiR-BMKO,具体所得3株,分别命名为HaiR-BMKO1、HaiR-BMKO2和HaiR-BMKO3;转入TRVGbCLA1的海 岛棉植株,命名为HaiR-CLAKO;转入TRV-00空载体的海岛棉植株,命名为HaiR-CK。The recombinant plasmid TRVGhBM constructed in step (2) was introduced into the sea island cotton variety HaiR through Agrobacterium GV3101. For specific transformation and screening methods, see "Liang, C et al. Sci Rep, 2016. (6), 35040.". At the same time, a control of TRV-00 and TRVGbCLA1 transferred into the empty carrier (gifted by the laboratory of Professor Zhang Xianlong of Huazhong Agricultural University) was set up. Finally, three transiently expressed transgenic cotton plants were obtained, namely the sea island cotton plants transformed into the TRVGhBM vector, collectively referred to as HaiR-BMKO, and the 3 plants obtained were specifically named HaiR-BMKO1, HaiR-BMKO2 and HaiR-BMKO3; those transformed into TRVGbCLA1 The sea island cotton plant was named HaiR-CLAKO; the sea island cotton plant transferred into the TRV-00 empty carrier was named HaiR-CK.
(4)转TRVGhBM棉花中GhBM表达分析(4) GhBM expression analysis in TRVGhBM cotton
收集步骤(3)中获得的棉花TRVGhBM材料花瓣,根据实施例3中RNA提取、反转录、qRT-PCR等方法分析转入TRVGhBM棉花HaiR-BMKO中GhBM的表达量,其中对照组HaiR-CK。Collect the cotton TRVGhBM material petals obtained in step (3), and analyze the expression of GhBM in the TRVGhBM cotton HaiR-BMKO according to the RNA extraction, reverse transcription, qRT-PCR and other methods in Example 3. The control group HaiR-CK .
定量荧光PCR结果(见图7),与HaiR-CK相比较,HaiR-BMKO棉花中GhBM基因的表达量显著降低,说明干涉基因表达的实验成功。Quantitative fluorescent PCR results (see Figure 7), compared with HaiR-CK, the expression of GhBM gene in HaiR-BMKO cotton was significantly reduced, indicating that the experiment of interference gene expression was successful.
(5)转基因对照组TRV GbCLA1表型分析(5) Phenotype analysis of TRV GbCLA1 in the transgenic control group
注射2周后,观察步骤(3)中获得的TRV-CLAKO棉花新生叶片颜色变化,结果TRV-CLAKO棉花新生叶片出现明显的白化或者斑点状白化,表明VIGS侵染事件成功,菌株和载体均不存在问题。转入TRV-00空载的HaiR-CK为实验对照,观察步骤(3)获得的棉花HaiR-BMKO干涉株系花,观察各干涉棉花株系花瓣基部紫斑的变化,包括紫斑有无、大小和颜色深浅的改变,每个转基因事件至少观测20个花以上。Two weeks after the injection, the color change of the new leaves of TRV-CLAKO cotton obtained in step (3) was observed. The results showed that the new leaves of TRV-CLAKO cotton showed obvious albino or spot-like albino, indicating that the VIGS infection event was successful, and neither the strain nor the carrier was successful. There is a problem. The HaiR-CK transferred to TRV-00 with no load is the experimental control. Observe the flowers of the cotton HaiR-BMKO interference line obtained in step (3), and observe the changes of the purple spots at the base of the petals of each interference cotton line, including the presence or absence, size and For changes in color shades, at least 20 flowers should be observed for each transgenic event.
结果:与HaiR-CK相比较,HaiR-BMKO棉花花瓣基部发育不受任何影响,然而HaiR-BMKO干涉棉花株系中,幼蕾期花瓣基部紫斑发育明显抑制,甚至消失(见图8);开花期,和对照组HaiR-CK相比较,HaiR-BMKO观测不到紫斑的出现(见图9)。说明GhBM基因是控制花瓣基部紫斑形成的基因。Results: Compared with HaiR-CK, HaiR-BMKO cotton petal base development was not affected in any way. However, in HaiR-BMKO interference cotton lines, the development of purple spots at the petal base at the young bud stage was significantly inhibited or even disappeared (see Figure 8); During the period, compared with the control group HaiR-CK, HaiR-BMKO did not observe the appearance of purple spots (see Figure 9). It shows that the GhBM gene is a gene that controls the formation of purple spots at the base of the petals.

Claims (12)

  1. 一种花瓣紫斑蛋白,其特征在于,所述的蛋白是如下(1)、(2)或(3)的蛋白质:A petal purpura protein, characterized in that the protein is the following (1), (2) or (3) protein:
    (1)由SEQ ID No:2所示的氨基酸序列组成的蛋白质;(1) A protein consisting of the amino acid sequence shown in SEQ ID No: 2;
    (2)SEQ ID No:2所示的氨基酸序列经过一个或几个氨基酸残基的取代、和/或缺失、和/或添加得到的、且具有相同功能的蛋白质。(2) The amino acid sequence shown in SEQ ID No: 2 is a protein obtained by substitution, and/or deletion, and/or addition of one or several amino acid residues, and having the same function.
    (3)与SEQ ID No:2所示的氨基酸序列具有90%以上同一性、且具有相同功能的蛋白质。(3) A protein that has more than 90% identity with the amino acid sequence shown in SEQ ID No: 2 and has the same function.
  2. 权利要求1所述的花瓣紫斑蛋白在调控植物花瓣紫斑上的应用。The application of the petal purpura protein of claim 1 in regulating and controlling plant petal purpura.
  3. 根据权利要求2所述的应用,其特征在于,所述植物是指棉花或花卉植物。The application according to claim 2, wherein the plant is cotton or floral plant.
  4. 编码权利要求1所述花瓣紫斑蛋白的基因,其特征在于,所述的基因为如下(a)、(b)、(c)或(d)所述的核酸分子:The gene encoding the petal purpurin of claim 1, wherein the gene is a nucleic acid molecule as described in (a), (b), (c) or (d) below:
    (a)由SEQ ID No:1所示的核苷酸序列组成;(a) Consists of the nucleotide sequence shown in SEQ ID No: 1;
    (b)与SEQ ID No:1所示的核苷酸序列具有90%以上的同一性,且编码相同功能蛋白的核苷酸序列;(b) A nucleotide sequence that has more than 90% identity with the nucleotide sequence shown in SEQ ID No: 1 and encodes the same functional protein;
    (c)与SEQ ID No:1所示的核苷酸序列具有95%以上同一性、且编码相同功能蛋白的核苷酸序列;(c) A nucleotide sequence that has more than 95% identity with the nucleotide sequence shown in SEQ ID No: 1 and encodes the same functional protein;
    (d)在严格条件下与(a)、(b)或(c)所限定的核苷酸序列杂交、且编码相同功能蛋白的核苷酸序列。(d) A nucleotide sequence that hybridizes to the nucleotide sequence defined in (a), (b) or (c) under stringent conditions and encodes the same functional protein.
  5. 含有权利要求4所述基因的重组表达载体。A recombinant expression vector containing the gene of claim 4.
  6. 根据权利要求5所述的重组表达载体,其特征在于所述的载体指pBI121、pCAMBIA1300或pCAMBIA2300。The recombinant expression vector according to claim 5, wherein the vector is pBI121, pCAMBIA1300 or pCAMBIA2300.
  7. 含有权利要求4所述基因或权利要求7所述重组表达载体的微生物、细胞系或植物。A microorganism, cell line or plant containing the gene of claim 4 or the recombinant expression vector of claim 7.
  8. 权利要求4所述的基因或权利要求5所述的重组表达载体在调控植物花瓣紫斑上的应用。Application of the gene of claim 4 or the recombinant expression vector of claim 5 in regulating the purple spot of plant petals.
  9. 根据权利要求8所述的应用,其特征在于所述的植物是指棉花或花卉植物。The application according to claim 8, characterized in that the plant is cotton or floral plant.
  10. 根据权利要求3或9所述的应用,其特征在于,所述的花卉植物是 指唐菖蒲(Gladiolus gandavensis)、玫瑰(Rosa rugosa Thunb.)、康乃馨(Dianthus caryophyllus)、石竹(Dianthus chinensis L.)、水仙(Narcissus tazetta L.var.chinensis Roem)、月季(Rosa chinensis Jacq)、郁金香(Tulipa gesneriana L.)、玉兰(Magnolia denudata Desr)、牡丹(Paeonia suffruticosa Andr.)、芍药(Paeonia lactiflora Pall.)、丁香(Syringa Linn)、紫荆(Cercis chinensis)、仙客来(Cyclamen persicum Mill.)、风信子(Hyacinthus orientalis L.)、马蹄莲(Zantedeschia aethiopica(L.)Spreng.)、长春菊、天竺葵(Pelargonium hortorum)、报春花(Primula malacoides Franch.)、瓜叶菊(Pericallis hybrida)、矮牵牛(Petunia hybrida)、虞美人(Papaver rhoeas L.)、金鱼草(Antirrhinum majus L.)、扶桑(Hibiscus rosa-sinensis)、木芙蓉(Hibiscus mutabilis Linn.)、夹竹桃(Nerium indicum Mill.)、大丽花(Dahlia pinnata Cav.)、五色梅(Lantana camara L.)、美人蕉(Canna indica L.)、向日葵(Helianthus annuus L.)、一串红(Salvia splendens Ker-Gawler)、鸡冠花(Celosia cristata L.)、凤仙花(Impatiens balsamina L.)、半枝莲(Scutellaria barbata D.Don)、雁来红(Amaranthus tricolor)、菊花(Dendranthema morifolium(Ramat.)Tzvel.)、荷花(Nelumbo SP.)或睡莲(Nymphaea L.)之一种。The application according to claim 3 or 9, characterized in that, the floral plant refers to gladiolus (Gladiolus gandavensis), rose (Rosa rugosa Thunb.), carnation (Dianthus caryophyllus), dianthus (Dianthus chinensis L.) , Narcissus (Narcissus tazetta L.var.chinensis Roem), Rose (Rosa chinensis Jacq), Tulip (Tulipa gesneriana L.), Magnolia (Magnolia denudata Desr), Peony (Paeonia suffruticosa Andr.), Paeonia (Paeonia Pall.flora) , Lilac (Syringa Linn), bauhinia (Cercis chinensis), cyclamen (Cyclamen persicum Mill.), hyacinth (Hyacinthus orientalis L.), calla (Zantedeschia aethiopica (L.) Spreng.), periwinkle (L. Pelargonium hortorum), Primula (Primula malacoides Franch.), Cineraria (Pericallis hybrida), Petunia (Petunia hybrida), Poppies (Papaver rhoeas L.), Snapdragons (Antirrhinum majus L.), Hibiscus (Hibiscus rosa) -sinensis), Hibiscus mutabilis Linn., Nerium indicum Mill., Dahlia pinnata Cav., Lantana camara L., Canna indica L., Sunflower (Helianthus) annuus L., Salvia splendens Ker-Gawler, Celosia cristata L., Impatiens balsamina L., Scutellaria barbata D. Don, Amaranthus tricolor), chrysanthemum (Dendranthema morifolium (Ramat.) Tzvel.), lotus (Nelumbo SP.) or water lily (Nymphaea L.) One of a kind.
  11. 一种培育花瓣具有紫斑的植物品种的方法,其特征在于包括向目的植物中导入权利要求4所述的基因,得到花瓣具有紫斑的转基因植物。A method for cultivating plant varieties with purple spots on petals, which is characterized in that it comprises introducing the gene of claim 4 into a target plant to obtain transgenic plants with purple spots on petals.
  12. 根据权利要求11所述的方法,其特征在于,所述的目的植物是指棉花或花卉植物等。The method according to claim 11, wherein the target plant is cotton or floral plants.
PCT/CN2019/124748 2019-12-12 2019-12-12 Petal purple spot protein and coding gene thereof WO2021114156A1 (en)

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