WO2020191391A3 - Séquençage à base d'intelligence artificielle - Google Patents

Séquençage à base d'intelligence artificielle Download PDF

Info

Publication number
WO2020191391A3
WO2020191391A3 PCT/US2020/024092 US2020024092W WO2020191391A3 WO 2020191391 A3 WO2020191391 A3 WO 2020191391A3 US 2020024092 W US2020024092 W US 2020024092W WO 2020191391 A3 WO2020191391 A3 WO 2020191391A3
Authority
WO
WIPO (PCT)
Prior art keywords
analytes
image data
output
produces
sequencing
Prior art date
Application number
PCT/US2020/024092
Other languages
English (en)
Other versions
WO2020191391A2 (fr
Inventor
Anindita Dutta
Dorna KASHEFHAGHIGHI
Amirali Kia
Kishore Jaganathan
John Randall GOBBEL
Original Assignee
Illumina, Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from NL2023314A external-priority patent/NL2023314B1/en
Priority claimed from NL2023312A external-priority patent/NL2023312B1/en
Priority claimed from NL2023311A external-priority patent/NL2023311B9/en
Priority claimed from NL2023316A external-priority patent/NL2023316B1/en
Priority claimed from NL2023310A external-priority patent/NL2023310B1/en
Priority claimed from US16/825,991 external-priority patent/US11210554B2/en
Priority claimed from US16/826,126 external-priority patent/US11783917B2/en
Priority to JP2020572706A priority Critical patent/JP2022535306A/ja
Priority to CA3104951A priority patent/CA3104951A1/fr
Priority to MX2020014302A priority patent/MX2020014302A/es
Priority to KR1020217003270A priority patent/KR20210145116A/ko
Priority to AU2020240141A priority patent/AU2020240141A1/en
Application filed by Illumina, Inc. filed Critical Illumina, Inc.
Priority to BR112020026455-5A priority patent/BR112020026455A2/pt
Priority to CN202080004529.4A priority patent/CN112689875A/zh
Priority to SG11202012463YA priority patent/SG11202012463YA/en
Priority to EP20757979.8A priority patent/EP3942074A2/fr
Publication of WO2020191391A2 publication Critical patent/WO2020191391A2/fr
Publication of WO2020191391A3 publication Critical patent/WO2020191391A3/fr
Priority to IL279533A priority patent/IL279533A/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/08—Learning methods
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00—Pattern recognition
    • G06F18/20—Analysing
    • G06F18/23—Clustering techniques
    • G06F18/232—Non-hierarchical techniques
    • G06F18/2321—Non-hierarchical techniques using statistics or function optimisation, e.g. modelling of probability density functions
    • G06F18/23211—Non-hierarchical techniques using statistics or function optimisation, e.g. modelling of probability density functions with adaptive number of clusters
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F18/00—Pattern recognition
    • G06F18/20—Analysing
    • G06F18/24—Classification techniques
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/044—Recurrent networks, e.g. Hopfield networks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/045—Combinations of networks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/08—Learning methods
    • G06N3/084—Backpropagation, e.g. using gradient descent
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06V—IMAGE OR VIDEO RECOGNITION OR UNDERSTANDING
    • G06V10/00—Arrangements for image or video recognition or understanding
    • G06V10/20—Image preprocessing
    • G06V10/26—Segmentation of patterns in the image field; Cutting or merging of image elements to establish the pattern region, e.g. clustering-based techniques; Detection of occlusion
    • G06V10/267—Segmentation of patterns in the image field; Cutting or merging of image elements to establish the pattern region, e.g. clustering-based techniques; Detection of occlusion by performing operations on regions, e.g. growing, shrinking or watersheds
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06V—IMAGE OR VIDEO RECOGNITION OR UNDERSTANDING
    • G06V10/00—Arrangements for image or video recognition or understanding
    • G06V10/40—Extraction of image or video features
    • G06V10/44—Local feature extraction by analysis of parts of the pattern, e.g. by detecting edges, contours, loops, corners, strokes or intersections; Connectivity analysis, e.g. of connected components
    • G06V10/443—Local feature extraction by analysis of parts of the pattern, e.g. by detecting edges, contours, loops, corners, strokes or intersections; Connectivity analysis, e.g. of connected components by matching or filtering
    • G06V10/449—Biologically inspired filters, e.g. difference of Gaussians [DoG] or Gabor filters
    • G06V10/451—Biologically inspired filters, e.g. difference of Gaussians [DoG] or Gabor filters with interaction between the filter responses, e.g. cortical complex cells
    • G06V10/454—Integrating the filters into a hierarchical structure, e.g. convolutional neural networks [CNN]
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06V—IMAGE OR VIDEO RECOGNITION OR UNDERSTANDING
    • G06V10/00—Arrangements for image or video recognition or understanding
    • G06V10/70—Arrangements for image or video recognition or understanding using pattern recognition or machine learning
    • G06V10/82—Arrangements for image or video recognition or understanding using pattern recognition or machine learning using neural networks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06V—IMAGE OR VIDEO RECOGNITION OR UNDERSTANDING
    • G06V20/00—Scenes; Scene-specific elements
    • G06V20/60—Type of objects
    • G06V20/69—Microscopic objects, e.g. biological cells or cellular parts
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/10—Signal processing, e.g. from mass spectrometry [MS] or from PCR
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06V—IMAGE OR VIDEO RECOGNITION OR UNDERSTANDING
    • G06V20/00—Scenes; Scene-specific elements
    • G06V20/40—Scenes; Scene-specific elements in video content
    • G06V20/46—Extracting features or characteristics from the video content, e.g. video fingerprints, representative shots or key frames
    • G06V20/47—Detecting features for summarising video content
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06V—IMAGE OR VIDEO RECOGNITION OR UNDERSTANDING
    • G06V2201/00—Indexing scheme relating to image or video recognition or understanding
    • G06V2201/03—Recognition of patterns in medical or anatomical images

Landscapes

  • Engineering & Computer Science (AREA)
  • Theoretical Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Evolutionary Computation (AREA)
  • General Health & Medical Sciences (AREA)
  • Artificial Intelligence (AREA)
  • Data Mining & Analysis (AREA)
  • Molecular Biology (AREA)
  • Biomedical Technology (AREA)
  • Software Systems (AREA)
  • Multimedia (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • General Engineering & Computer Science (AREA)
  • Computing Systems (AREA)
  • Biophysics (AREA)
  • Medical Informatics (AREA)
  • Mathematical Physics (AREA)
  • Computational Linguistics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Evolutionary Biology (AREA)
  • Databases & Information Systems (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Bioethics (AREA)
  • Epidemiology (AREA)
  • Public Health (AREA)
  • Biotechnology (AREA)
  • Biodiversity & Conservation Biology (AREA)
  • Probability & Statistics with Applications (AREA)
  • Signal Processing (AREA)
  • Image Analysis (AREA)
  • Telephonic Communication Services (AREA)

Abstract

La technologie selon l'invention traite une première entrée par l'intermédiaire d'un premier réseau de neurones artificiels et produit une première sortie. La première entrée comprend des premières données d'images dérivées d'images d'analytes et de leur arrière-plan environnant capturé par un système de séquençage pour une exécution de séquençage. La technologie selon l'invention traite la première sortie par l'intermédiaire d'un post-processeur et produit des métadonnées concernant les analytes et leur arrière-plan environnant. La technologie selon l'invention traite une seconde entrée par l'intermédiaire d'un second réseau de neurones artificiels et produit une seconde sortie. La seconde entrée comprend des troisièmes données d'images obtenues par la modification de deuxièmes données d'images sur la base des métadonnées. Les deuxièmes données d'images sont dérivées des images des analytes et de leur arrière-plan environnant. La seconde sortie identifie des appels de bases d'un ou plusieurs des analytes lors d'un ou plusieurs cycles de séquençage de l'exécution du séquençage.
PCT/US2020/024092 2019-03-21 2020-03-22 Séquençage à base d'intelligence artificielle WO2020191391A2 (fr)

Priority Applications (10)

Application Number Priority Date Filing Date Title
EP20757979.8A EP3942074A2 (fr) 2019-03-21 2020-03-22 Séquençage à base d'intelligence artificielle
SG11202012463YA SG11202012463YA (en) 2019-03-21 2020-03-22 Artificial intelligence-based sequencing
CN202080004529.4A CN112689875A (zh) 2019-03-21 2020-03-22 基于人工智能的测序
BR112020026455-5A BR112020026455A2 (pt) 2019-03-21 2020-03-22 Sequenciamento baseado em inteligência artificial
JP2020572706A JP2022535306A (ja) 2019-03-21 2020-03-22 人工知能ベースの配列決定
AU2020240141A AU2020240141A1 (en) 2019-03-21 2020-03-22 Artificial intelligence-based sequencing
KR1020217003270A KR20210145116A (ko) 2019-03-21 2020-03-22 인공 지능 기반 서열분석
CA3104951A CA3104951A1 (fr) 2019-03-21 2020-03-22 Sequencage a base d'intelligence artificielle
MX2020014302A MX2020014302A (es) 2019-03-21 2020-03-22 Secuenciacion basada en inteligencia artificial.
IL279533A IL279533A (en) 2019-03-21 2020-12-17 Creation through artificial intelligence

Applications Claiming Priority (30)

Application Number Priority Date Filing Date Title
US201962821724P 2019-03-21 2019-03-21
US201962821766P 2019-03-21 2019-03-21
US201962821602P 2019-03-21 2019-03-21
US201962821618P 2019-03-21 2019-03-21
US201962821681P 2019-03-21 2019-03-21
US62/821,618 2019-03-21
US62/821,681 2019-03-21
US62/821,602 2019-03-21
US62/821,766 2019-03-21
US62/821,724 2019-03-21
NL2023311 2019-06-14
NL2023316 2019-06-14
NL2023310 2019-06-14
NL2023314A NL2023314B1 (en) 2019-03-21 2019-06-14 Artificial intelligence-based quality scoring
NL2023310A NL2023310B1 (en) 2019-03-21 2019-06-14 Training data generation for artificial intelligence-based sequencing
NL2023316A NL2023316B1 (en) 2019-03-21 2019-06-14 Artificial intelligence-based sequencing
NL2023314 2019-06-14
NL2023311A NL2023311B9 (en) 2019-03-21 2019-06-14 Artificial intelligence-based generation of sequencing metadata
NL2023312A NL2023312B1 (en) 2019-03-21 2019-06-14 Artificial intelligence-based base calling
NL2023312 2019-06-14
US16/825,991 2020-03-20
US16/826,126 2020-03-20
US16/826,126 US11783917B2 (en) 2019-03-21 2020-03-20 Artificial intelligence-based base calling
US16/825,987 US11347965B2 (en) 2019-03-21 2020-03-20 Training data generation for artificial intelligence-based sequencing
US16/826,134 US11676685B2 (en) 2019-03-21 2020-03-20 Artificial intelligence-based quality scoring
US16/825,991 US11210554B2 (en) 2019-03-21 2020-03-20 Artificial intelligence-based generation of sequencing metadata
US16/826,134 2020-03-20
US16/825,987 2020-03-20
US16/826,168 2020-03-21
US16/826,168 US11436429B2 (en) 2019-03-21 2020-03-21 Artificial intelligence-based sequencing

Publications (2)

Publication Number Publication Date
WO2020191391A2 WO2020191391A2 (fr) 2020-09-24
WO2020191391A3 true WO2020191391A3 (fr) 2020-12-03

Family

ID=72519388

Family Applications (5)

Application Number Title Priority Date Filing Date
PCT/US2020/024091 WO2020191390A2 (fr) 2019-03-21 2020-03-21 Notation de qualité faisant appel à l'intelligence artificielle
PCT/US2020/024087 WO2020205296A1 (fr) 2019-03-21 2020-03-21 Génération à base d'intelligence artificielle de métadonnées de séquençage
PCT/US2020/024088 WO2020191387A1 (fr) 2019-03-21 2020-03-21 Appel de base à base d'intelligence artificielle
PCT/US2020/024090 WO2020191389A1 (fr) 2019-03-21 2020-03-21 Génération de données d'apprentissage pour séquençage à base d'intelligence artificielle
PCT/US2020/024092 WO2020191391A2 (fr) 2019-03-21 2020-03-22 Séquençage à base d'intelligence artificielle

Family Applications Before (4)

Application Number Title Priority Date Filing Date
PCT/US2020/024091 WO2020191390A2 (fr) 2019-03-21 2020-03-21 Notation de qualité faisant appel à l'intelligence artificielle
PCT/US2020/024087 WO2020205296A1 (fr) 2019-03-21 2020-03-21 Génération à base d'intelligence artificielle de métadonnées de séquençage
PCT/US2020/024088 WO2020191387A1 (fr) 2019-03-21 2020-03-21 Appel de base à base d'intelligence artificielle
PCT/US2020/024090 WO2020191389A1 (fr) 2019-03-21 2020-03-21 Génération de données d'apprentissage pour séquençage à base d'intelligence artificielle

Country Status (1)

Country Link
WO (5) WO2020191390A2 (fr)

Families Citing this family (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110398370B (zh) * 2019-08-20 2021-02-05 贵州大学 一种基于hts-cnn模型的轴承故障诊断方法
CN111883203B (zh) * 2020-07-03 2023-12-29 上海厦维医学检验实验室有限公司 用于预测pd-1疗效的模型的构建方法
US11200446B1 (en) 2020-08-31 2021-12-14 Element Biosciences, Inc. Single-pass primary analysis
CN112598620B (zh) * 2020-11-25 2022-11-15 哈尔滨工程大学 尿沉渣中透明管型、病理管型以及粘液丝的识别方法
CN112629851B (zh) * 2020-12-11 2022-10-25 南方海上风电联合开发有限公司 基于数据增强方法与图像识别的海上风电机组齿轮箱故障诊断方法
CN112541576B (zh) * 2020-12-14 2024-02-20 四川翼飞视科技有限公司 Rgb单目图像的生物活体识别神经网络构建方法
CN112652356B (zh) * 2021-01-19 2024-01-26 深圳市儒瀚科技有限公司 一种dna甲基化表观修饰的识别方法、识别设备及存储介质
CN112418360B (zh) * 2021-01-21 2021-04-13 深圳市安软科技股份有限公司 卷积神经网络的训练方法、行人属性识别方法及相关设备
CN113034355B (zh) * 2021-04-20 2022-06-21 浙江大学 一种基于深度学习的肖像图像双下巴去除方法
CN113506243A (zh) * 2021-06-04 2021-10-15 联合汽车电子有限公司 Pcb焊接缺陷检测方法、装置及存储介质
CN113658643B (zh) * 2021-07-22 2024-02-13 西安理工大学 一种基于注意力机制对lncRNA和mRNA的预测方法
WO2023010069A1 (fr) * 2021-07-29 2023-02-02 Ultima Genomics, Inc. Systèmes et procédés d'appel de base adaptatifs
WO2023049212A2 (fr) * 2021-09-22 2023-03-30 Illumina, Inc. Appel de base basé sur l'état
CN114399628B (zh) * 2021-12-21 2024-03-08 四川大学 复杂空间环境下的绝缘子高效检测系统
WO2023115550A1 (fr) 2021-12-24 2023-06-29 GeneSense Technology Inc. Procédés et systèmes basés sur l'apprentissage profond pour le séquençage d'acide nucléique
CN114092920B (zh) * 2022-01-18 2022-04-15 腾讯科技（深圳）有限公司 一种模型训练的方法、图像分类的方法、装置及存储介质
WO2023183937A1 (fr) * 2022-03-25 2023-09-28 Illumina, Inc. Appel de bases séquence par séquence
CN115277116B (zh) * 2022-07-06 2024-02-02 中能电力科技开发有限公司 网络隔离的方法、装置、存储介质及电子设备
CN115272136B (zh) * 2022-09-27 2023-05-05 广州卓腾科技有限公司 基于大数据的证件照眼镜反光消除方法、装置、介质及设备
CN115630566B (zh) * 2022-09-28 2024-05-07 中国人民解放军国防科技大学 一种基于深度学习和动力约束的资料同化方法和系统
CN116796196B (zh) * 2023-08-18 2023-11-21 武汉纺织大学 基于多模态联合嵌入的共语姿势生成方法

Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20120020537A1 (en) * 2010-01-13 2012-01-26 Francisco Garcia Data processing system and methods
WO2018129314A1 (fr) * 2017-01-06 2018-07-12 Illumina, Inc. Correction de phase
WO2019079182A1 (fr) * 2017-10-16 2019-04-25 Illumina, Inc. Apprentissage semi-supervisé pour l'apprentissage d'un ensemble de réseaux neuronaux à convolution profonde
WO2019079202A1 (fr) * 2017-10-16 2019-04-25 Illumina, Inc. Détection de raccordement aberrant à l'aide de réseaux neuronaux à convolution (cnn)
WO2019136284A1 (fr) * 2018-01-05 2019-07-11 Illumina, Inc. Prédiction de la qualité de résultats de séquençage utilisant des réseaux neuronaux profonds
WO2019140402A1 (fr) * 2018-01-15 2019-07-18 Illumina, Inc. Classificateur de variants basé sur un apprentissage profond

Family Cites Families (72)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2044616A1 (fr) 1989-10-26 1991-04-27 Roger Y. Tsien Sequencage de l'adn
JP2782858B2 (ja) 1989-10-31 1998-08-06 松下電器産業株式会社 スクロール気体圧縮機
WO1991006778A1 (fr) 1989-11-02 1991-05-16 Sundstrand Corporation Pompe regenerative et procede de refoulement du fluide sous pression
US5641658A (en) 1994-08-03 1997-06-24 Mosaic Technologies, Inc. Method for performing amplification of nucleic acid with two primers bound to a single solid support
DE69530072T2 (de) 1994-12-08 2004-03-04 Molecular Dynamics, Sunnyvale System zur fluoreszenzabbildung unter verwendung eines objektivs mit makroabtastung
US5528050A (en) 1995-07-24 1996-06-18 Molecular Dynamics, Inc. Compact scan head with multiple scanning modalities
US6327410B1 (en) 1997-03-14 2001-12-04 The Trustees Of Tufts College Target analyte sensors utilizing Microspheres
US6023540A (en) 1997-03-14 2000-02-08 Trustees Of Tufts College Fiber optic sensor with encoded microspheres
US7622294B2 (en) 1997-03-14 2009-11-24 Trustees Of Tufts College Methods for detecting target analytes and enzymatic reactions
WO1998044152A1 (fr) 1997-04-01 1998-10-08 Glaxo Group Limited Methode de sequençage d'acide nucleique
JP2002503954A (ja) 1997-04-01 2002-02-05 グラクソ、グループ、リミテッド 核酸増幅法
AR021833A1 (es) 1998-09-30 2002-08-07 Applied Research Systems Metodos de amplificacion y secuenciacion de acido nucleico
US20050191698A1 (en) 1999-04-20 2005-09-01 Illumina, Inc. Nucleic acid sequencing using microsphere arrays
US6355431B1 (en) 1999-04-20 2002-03-12 Illumina, Inc. Detection of nucleic acid amplification reactions using bead arrays
EP1923471B1 (fr) 1999-04-20 2012-12-19 Illumina, Inc. Détection de réactions d'acide nucléique sur les réseaux à perle
US6770441B2 (en) 2000-02-10 2004-08-03 Illumina, Inc. Array compositions and methods of making same
CN100462433C (zh) 2000-07-07 2009-02-18 维西根生物技术公司 实时序列测定
WO2002044425A2 (fr) 2000-12-01 2002-06-06 Visigen Biotechnologies, Inc. Synthese d'acides nucleiques d'enzymes, et compositions et methodes modifiant la fidelite d'incorporation de monomeres
AR031640A1 (es) 2000-12-08 2003-09-24 Applied Research Systems Amplificacion isotermica de acidos nucleicos en un soporte solido
GB0127564D0 (en) 2001-11-16 2002-01-09 Medical Res Council Emulsion compositions
US7057026B2 (en) 2001-12-04 2006-06-06 Solexa Limited Labelled nucleotides
US20040002090A1 (en) 2002-03-05 2004-01-01 Pascal Mayer Methods for detecting genome-wide sequence variations associated with a phenotype
WO2004018497A2 (fr) 2002-08-23 2004-03-04 Solexa Limited Nucleotides modifies
CA2513889A1 (fr) 2003-01-29 2004-08-19 454 Corporation Sequencage a double extremite
DE10320388A1 (de) 2003-05-06 2004-11-25 Basf Ag Polymere für die Wasserbehandlung
WO2005010145A2 (fr) 2003-07-05 2005-02-03 The Johns Hopkins University Procede et compositions de detection et d'enumeration de variations genetiques
GB0321306D0 (en) 2003-09-11 2003-10-15 Solexa Ltd Modified polymerases for improved incorporation of nucleotide analogues
JP2007525571A (ja) 2004-01-07 2007-09-06 ソレクサ リミテッド 修飾分子アレイ
CN101914620B (zh) 2004-09-17 2014-02-12 加利福尼亚太平洋生命科学公司 核酸测序的方法
JP2006156608A (ja) 2004-11-29 2006-06-15 Hitachi Ltd 磁気メモリおよびその製造方法
CN101076290B (zh) 2004-12-09 2011-11-23 铸造品股份有限公司 主动脉瓣修复
WO2006064199A1 (fr) 2004-12-13 2006-06-22 Solexa Limited Procede ameliore de detection de nucleotides
GB0427236D0 (en) 2004-12-13 2005-01-12 Solexa Ltd Improved method of nucleotide detection
US20060178901A1 (en) 2005-01-05 2006-08-10 Cooper Kelana L Home movies television (HMTV)
JP2006199187A (ja) 2005-01-21 2006-08-03 Kyowa Sangyo Kk 車両用サンバイザ
SE529136C2 (sv) 2005-01-24 2007-05-08 Volvo Lastvagnar Ab Styrväxelkylare
US7144195B1 (en) 2005-05-20 2006-12-05 Mccoskey William D Asphalt compaction device
US7293515B2 (en) 2005-06-10 2007-11-13 Janome Sewing Machine Co., Ltd. Embroidery sewing machine
EP3257949A1 (fr) 2005-06-15 2017-12-20 Complete Genomics Inc. Analyse d'acide nucléique par des mélanges aléatoires de fragments non chevauchants
GB0514936D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Preparation of templates for nucleic acid sequencing
GB0514910D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Method for sequencing a polynucleotide template
GB0517097D0 (en) 2005-08-19 2005-09-28 Solexa Ltd Modified nucleosides and nucleotides and uses thereof
US7405281B2 (en) 2005-09-29 2008-07-29 Pacific Biosciences Of California, Inc. Fluorescent nucleotide analogs and uses therefor
GB0522310D0 (en) 2005-11-01 2005-12-07 Solexa Ltd Methods of preparing libraries of template polynucleotides
US7329860B2 (en) 2005-11-23 2008-02-12 Illumina, Inc. Confocal imaging methods and apparatus
WO2007107710A1 (fr) 2006-03-17 2007-09-27 Solexa Limited Procédés isothermiques pour créer des réseaux moléculaires clonales simples
EP2018622B1 (fr) 2006-03-31 2018-04-25 Illumina, Inc. Systèmes pour analyse de séquençage par synthèse
US7754429B2 (en) 2006-10-06 2010-07-13 Illumina Cambridge Limited Method for pair-wise sequencing a plurity of target polynucleotides
US7414716B2 (en) 2006-10-23 2008-08-19 Emhart Glass S.A. Machine for inspecting glass containers
WO2008051530A2 (fr) 2006-10-23 2008-05-02 Pacific Biosciences Of California, Inc. Enzymes polymèrases et réactifs pour le séquençage amélioré d'acides nucléiques
US8039817B2 (en) 2008-05-05 2011-10-18 Illumina, Inc. Compensator for multiple surface imaging
WO2010003132A1 (fr) 2008-07-02 2010-01-07 Illumina Cambridge Ltd. Utilisation de populations de billes dans la fabrication de matrices sur des surfaces
US8951781B2 (en) 2011-01-10 2015-02-10 Illumina, Inc. Systems, methods, and apparatuses to image a sample for biological or chemical analysis
EP2663656B1 (fr) 2011-01-13 2016-08-24 Decode Genetics EHF Variants génétiques comme marqueurs à utiliser dans l'évaluation du risque du cancer de la vessie
EP2718465B1 (fr) 2011-06-09 2022-04-13 Illumina, Inc. Procede de fabrication d'un reseau d'analytes
EP3305400A3 (fr) 2011-10-28 2018-06-06 Illumina, Inc. Système et procédé de fabrication de microréseau
US8666119B1 (en) 2011-11-29 2014-03-04 Lucasfilm Entertainment Company Ltd. Geometry tracking
EP3366348B1 (fr) 2012-01-16 2023-08-23 Greatbatch Ltd. Traversée hermétique co-connectée filtrée emi, condensateur de traversée et ensemble de dérivation pour dispositif médical implantable actif
BR112014024789B1 (pt) 2012-04-03 2021-05-25 Illumina, Inc aparelho de detecção e método para formação de imagem de um substrato
US9512422B2 (en) 2013-02-26 2016-12-06 Illumina, Inc. Gel patterned surfaces
AU2013382195B2 (en) 2013-03-13 2019-09-19 Illumina, Inc. Methods and systems for aligning repetitive DNA elements
DK3431614T3 (da) 2013-07-01 2021-12-06 Illumina Inc Katalysator fri overfladefunktionalisering og polymerpodning
SI3077943T1 (sl) 2013-12-03 2020-10-30 Illumina, Inc. Postopki in sistemi za analiziranje slikovnih podatkov
US9677132B2 (en) 2014-01-16 2017-06-13 Illumina, Inc. Polynucleotide modification on solid support
CN107002121B (zh) 2014-09-18 2020-11-13 亿明达股份有限公司 用于分析核酸测序数据的方法和系统
JP6759197B2 (ja) 2014-10-31 2020-09-23 イルミナ ケンブリッジ リミテッド 新規のポリマーおよびｄｎａコポリマーコーティング
GB2549554A (en) * 2016-04-21 2017-10-25 Ramot At Tel-Aviv Univ Ltd Method and system for detecting an object in an image
RU2736384C1 (ru) * 2017-03-07 2020-11-16 Иллюмина, Инк. Секвенирование с помощью одиночного источника света и двух оптических каналов
NL2018852B1 (en) * 2017-05-05 2018-11-14 Illumina Inc Optical distortion correction for imaged samples
JP2020533951A (ja) * 2017-09-15 2020-11-26 イルミナ インコーポレイテッド 配列検出システムの調整および較正の特徴
WO2019136376A1 (fr) * 2018-01-08 2019-07-11 Illumina, Inc. Séquençage à haut débit à détection à semi-conducteur
US20200251183A1 (en) * 2018-07-11 2020-08-06 Illumina, Inc. Deep Learning-Based Framework for Identifying Sequence Patterns that Cause Sequence-Specific Errors (SSEs)

Patent Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20120020537A1 (en) * 2010-01-13 2012-01-26 Francisco Garcia Data processing system and methods
WO2018129314A1 (fr) * 2017-01-06 2018-07-12 Illumina, Inc. Correction de phase
WO2019079182A1 (fr) * 2017-10-16 2019-04-25 Illumina, Inc. Apprentissage semi-supervisé pour l'apprentissage d'un ensemble de réseaux neuronaux à convolution profonde
WO2019079202A1 (fr) * 2017-10-16 2019-04-25 Illumina, Inc. Détection de raccordement aberrant à l'aide de réseaux neuronaux à convolution (cnn)
WO2019136284A1 (fr) * 2018-01-05 2019-07-11 Illumina, Inc. Prédiction de la qualité de résultats de séquençage utilisant des réseaux neuronaux profonds
WO2019140402A1 (fr) * 2018-01-15 2019-07-18 Illumina, Inc. Classificateur de variants basé sur un apprentissage profond

Non-Patent Citations (8)

* Cited by examiner, † Cited by third party
Title
ANONYMOUS: "MiSeq: Imaging and Base Calling", 1 January 2013 (2013-01-01), XP055669460, Retrieved from the Internet <URL:https://support.illumina.com/content/dam/illumina-support/courses/MiSeq_Imaging_and_Base_Calling/story_content/external_files/MiSeq%20Imaging%20and%20Base%20Calling%20Script.pdf> [retrieved on 20200218] *
ANONYMOUS: "MiSEQ: Imaging and Base Calling", 1 January 2013 (2013-01-01), XP055669545, Retrieved from the Internet <URL:https://support.illumina.com/training.html> [retrieved on 20200218] *
ASHLEY CACHO ET AL: "A Comparison of Base-calling Algorithms for Illumina Sequencing Technology", vol. 17, no. 5, 1 September 2016 (2016-09-01), pages 786 - 795, XP009504597, ISSN: 1467-5463, Retrieved from the Internet <URL:https://academic.oup.com/bib/article-abstract/17/5/786/2262186> [retrieved on 20151005], DOI: 10.1093/BIB/BBV088 *
BO WANG ET AL: "An adaptive decorrelation method removes Illumina DNA base-calling errors caused by crosstalk between adjacent clusters", SCIENTIFIC REPORTS, vol. 7, no. 1, 1 February 2017 (2017-02-01), XP055712768, DOI: 10.1038/srep41348 *
FRANKA J. RANG ET AL: "From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy", GENOME BIOLOGY, vol. 19, no. 1, 13 July 2018 (2018-07-13), XP055629288, DOI: 10.1186/s13059-018-1462-9 *
HYUNGTAE LEE ET AL: "Fast Object Localization Using a CNN Feature Map Based Multi-Scale Search", ARXIV.ORG, CORNELL UNIVERSITY LIBRARY, 201 OLIN LIBRARY CORNELL UNIVERSITY ITHACA, NY 14853, 12 April 2016 (2016-04-12), XP080695042 *
KAIMING HE ET AL: "Deep Residual Learning for Image Recognition", 2016 IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), 10 December 2015 (2015-12-10), arXiv, pages 1 - 12, XP055353100, Retrieved from the Internet <URL:https://arxiv.org/abs/1512.03385> [retrieved on 20170309], DOI: 10.1109/CVPR.2016.90 *
TIM ALBRECHT ET AL: "Deep learning for single-molecule science", NANOTECHNOLOGY, INSTITUTE OF PHYSICS PUBLISHING, GB, vol. 28, no. 42, 18 September 2017 (2017-09-18), pages 423001, XP020320531, ISSN: 0957-4484, [retrieved on 20170918], DOI: 10.1088/1361-6528/AA8334 *

Also Published As

Publication number Publication date
WO2020191390A3 (fr) 2020-11-12
WO2020191389A1 (fr) 2020-09-24
WO2020191390A2 (fr) 2020-09-24
WO2020191391A2 (fr) 2020-09-24
WO2020191387A1 (fr) 2020-09-24
WO2020205296A1 (fr) 2020-10-08

Similar Documents

Publication Publication Date Title
WO2020191391A3 (fr) Séquençage à base d&#39;intelligence artificielle
MX2020014302A (es) Secuenciacion basada en inteligencia artificial.
WO2019202397A3 (fr) Modélisation d&#39;environnement de véhicule avec une caméra
AU2019201787A1 (en) Compositing aware image search
US20180268207A1 (en) Method for automatic facial impression transformation, recording medium and device for performing the method
JP7074052B2 (ja) 画像処理装置および方法
ATE503350T1 (de) Betrieb von kameras mit zwei linsen zur bildvergrösserung
WO2020018416A8 (fr) Procédé de paiement, appareil et système
WO2020182230A3 (fr) Procédé de fusion d&#39;image et terminal portatif
DE602007005815D1 (de) Verfahren und vorrichtung zur bilderweiterung
EP3715994A3 (fr) Appareil électronique et son procédé de commande
CN110211030B (zh) 图像生成方法和装置
EP1308792A3 (fr) Méthode de formation d&#39;images et appareil de formation d&#39;images
KR20160047847A (ko) 영상 정합 방법
EP3629240A3 (fr) Des réseaux adverses génératifs pour éliminer le bruit local d&#39;une image
JP2020042760A (ja) 情報処理方法、情報処理装置、及びプログラム
WO2020197233A3 (fr) Procédé d&#39;apprentissage pour générer une image collatérale multiphase et procédé de génération d&#39;image collatérale multiphase utilisant l&#39;apprentissage automatique
JP2010506482A (ja) ビデオストリームの視差回復方法及びフィルタ
WO2020242089A3 (fr) Procédé de conservation basé sur l&#39;intelligence artificielle et dispositif pour la mise en oeuvre de ce procédé
WO2021026515A8 (fr) Procédé et système de test de performances d&#39;imagerie optique
EP4318382A3 (fr) Correction d&#39;image d&#39;un flux vidéo d&#39;endoscope chirurgical
JP2021108022A5 (fr)
CN110555799A (zh) 用于处理视频的方法和装置
CN109495694A (zh) 一种基于rgb-d的环境感知方法及装置
WO2022170048A3 (fr) Nano-optique neuronale pour imagerie à lentille mince de haute qualité

Legal Events

Date Code Title Description
ENP Entry into the national phase

Ref document number: 3104951

Country of ref document: CA

ENP Entry into the national phase

Ref document number: 2020572706

Country of ref document: JP

Kind code of ref document: A

REG Reference to national code

Ref country code: BR

Ref legal event code: B01A

Ref document number: 112020026455

Country of ref document: BR

ENP Entry into the national phase

Ref document number: 2020240141

Country of ref document: AU

Date of ref document: 20200322

Kind code of ref document: A

121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 20757979

Country of ref document: EP

Kind code of ref document: A2

DPE1 Request for preliminary examination filed after expiration of 19th month from priority date (pct application filed from 20040101)
ENP Entry into the national phase

Ref document number: 112020026455

Country of ref document: BR

Kind code of ref document: A2

Effective date: 20201222

NENP Non-entry into the national phase

Ref country code: DE

WWE Wipo information: entry into national phase

Ref document number: 2020757979

Country of ref document: EP

ENP Entry into the national phase

Ref document number: 2020757979

Country of ref document: EP

Effective date: 20211021