WO2020060494A1 - Acid-sensitive degradable imidazolium polymers for antimicrobial applications - Google Patents

Acid-sensitive degradable imidazolium polymers for antimicrobial applications Download PDF

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WO2020060494A1
WO2020060494A1 PCT/SG2019/050478 SG2019050478W WO2020060494A1 WO 2020060494 A1 WO2020060494 A1 WO 2020060494A1 SG 2019050478 W SG2019050478 W SG 2019050478W WO 2020060494 A1 WO2020060494 A1 WO 2020060494A1
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polymer
ibn
optionally substituted
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instance
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Yugen Zhang
Shu Wen Diane LIM
Yuan Yuan
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Agency For Science, Technology And Research
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    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01NPRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
    • A01N33/00Biocides, pest repellants or attractants, or plant growth regulators containing organic nitrogen compounds
    • A01N33/02Amines; Quaternary ammonium compounds
    • A01N33/12Quaternary ammonium compounds
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01NPRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
    • A01N43/00Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds
    • A01N43/48Biocides, pest repellants or attractants, or plant growth regulators containing heterocyclic compounds having rings with two nitrogen atoms as the only ring hetero atoms
    • A01N43/501,3-Diazoles; Hydrogenated 1,3-diazoles
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • CCHEMISTRY; METALLURGY
    • C08ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
    • C08GMACROMOLECULAR COMPOUNDS OBTAINED OTHERWISE THAN BY REACTIONS ONLY INVOLVING UNSATURATED CARBON-TO-CARBON BONDS
    • C08G73/00Macromolecular compounds obtained by reactions forming a linkage containing nitrogen with or without oxygen or carbon in the main chain of the macromolecule, not provided for in groups C08G12/00 - C08G71/00
    • C08G73/06Polycondensates having nitrogen-containing heterocyclic rings in the main chain of the macromolecule
    • C08G73/0605Polycondensates containing five-membered rings, not condensed with other rings, with nitrogen atoms as the only ring hetero atoms
    • C08G73/0616Polycondensates containing five-membered rings, not condensed with other rings, with nitrogen atoms as the only ring hetero atoms with only two nitrogen atoms in the ring
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/41Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with two or more ring hetero atoms, at least one of which being nitrogen, e.g. tetrazole
    • A61K31/41641,3-Diazoles
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/74Synthetic polymeric materials
    • A61K31/785Polymers containing nitrogen
    • A61K31/787Polymers containing nitrogen containing heterocyclic rings having nitrogen as a ring hetero atom

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Abstract

The present disclosure relates to polymers having the following Formula (I) : where L1 is a degradable linker preferably containing an acetal or orthoformate group, and methods for preparing the same. The present disclosure also relates to antimicrobial compositions comprising the polymers and their uses in inhibiting or killing microorganisms for therapeutic and non-therapeutic applications.

Description

Description
Title of Invention: Acid-Sensitive Degradable Imidazolium
Polymers for Antimicrobial Applications
Cross-Reference to Related Application
This application claims priority to Singapore application number 10201808211U filed on 20 September 2018, the disclosure of which is hereby incorporated by reference.
Technical Field
The present invention relates to imidazolium-based oligomers and polymers, specifically imidazolium based oligomers and polymers which may demonstrate antimicrobial activity. Such oligomers may be used in an antimicrobial composition for therapeutic and non- therapeutic purposes.
Background
Antimicrobial resistance (AMR) is one of the critical challenges facing modem society, with predictions estimating about 10 million deaths caused by antimicrobial resistant microorganisms annually by 2050. As a result of longer hospital stays and higher morbidity, the cost of treating antibiotic -resistant infections has been pegged at between US$150 million to $30 billion a year. Most worryingly, emerging reports of bacterial infections by strains resistant to all existing drugs underscore the pressing need to tackle the issue of resistance in bacteria.
Resistant strains may be contracted directly from animals, water and air, or the community. More importantly, it has been found that resistance to existing antimicrobial treatments may develop through misuse or prolonged exposure of the microorganisms to antibiotics in the environment. The overuse of antibiotics for therapeutic and non-therapeutic applications, such as agricultural and environmental disinfection results in accumulation of low levels of antibiotics in the ecosystem over long periods of time. These antibiotic residues may eventually enter the food chain, where they stand to further contaminate downstream agriculture products. Increased exposure to these low levels of antibiotics in the environment may lead to the development of resistant strains of bacteria, which survive and propagate through natural selection processes.
Imidazolium-based oligomers and polymers show great promise as antimicrobial compounds due to their high efficacy, selectivity and fast killing kinetics against a broad range of bacteria and fungi. However, the development of such polymers has been rather limited due to growing concerns that such polymers may accumulate in the environment over time, thereby encouraging the development of resistant strains of bacteria. As such, modification or preparation of new imidazolium polymers which may circumvent or reduce selection for resistant microbial strains, are essential. In particular, it is an object of the present invention to provide new imidazolium-based polymers for use as antimicrobials, wherein the imidazolium-based polymers may be safely produced and used without risk or with substantially reduced risk of accumulation in the environment. It is further an object of the present invention to provide such environmentally-friend antimicrobials without compromising on their antimicrobial properties or efficacy.
Summary of Invention
In one aspect, there is provided a polymer having the following Formula (I):
Figure imgf000003_0001
Formula (I)
wherein
Li has the following structure:
Figure imgf000003_0002
wherein Ri and R2 are, in each instance, same or different, and are independently selected from the group consisting of hydrogen, optionally substituted alkyl, and optionally substituted alkoxy;
Ai and A2, are in each instance, same or different, and are optionally substituted aryl;
L2 is, in each instance, selected from the group consisting of optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, and optionally substituted aryl; X, in each instance, is same or different, and is a halogen; n is an integer of at least 1 ;
or a salt or hydrate thereof.
Advantageously, the polymer of Formula (I) as described herein may be capable of being degradable under neutral or acidic conditions. In embodiments, the polymer may be capable of being degradable at pH 6 to pH 8. In one preferred embodiment, under the condition of pH 6, the polymer may have a half-life of less than 9 hours, or preferably about 6 hours. These advantageous properties may be attributed to the polymer capable of being cleaved at the position of Li. Accordingly, the polymer may not be retained or entrained in the natural environment. This may reduce the bioaccumulation of antimicrobials in the ecosystem, which is critical for reducing, preventing or avoiding the development of antimicrobial-resistant microorganisms.
More advantageously, the polymer may exhibit improved or comparable antimicrobial activity over known non-degradable antimicrobial analogues. This may be attributed to the structure of Li serving as a hydrophobic region to form an amphiphilic conformation on the imidazolium main chain of the polymer. In embodiments, the polymer may be effective against a plurality of microorganisms, including but not limited to, Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, and Candida albicans. In one preferred embodiment, the microorganism activity may be reduced to about 1% within 10 minutes. In another preferred embodiment, the microorganism activity may be reduced to about 0.1% within 180 minutes. Also advantageously, the polymer may have low toxicity with less than 10% hemolysis.
Even more advantageously, the degradation products of the polymer may have weak or substantially no antimicrobial activity as well as low toxicity with less than 10% hemolysis. This may result in little or substantially no antibiotic residues passing into the ecosystem, reducing the potential of secondary environmental contamination.
In another aspect, there is provided a method for preparing a polymer as described herein, comprising the step of:
contacting a di-imidazole having the following Formula (II):
Figure imgf000005_0001
Formula (II)
wherein Li has the following structure:
Figure imgf000005_0002
wherein Ri and R2 are, in each instance, same or different, and are independently selected from the group consisting of hydrogen, optionally substituted alkyl, and optionally substituted alkoxy; and Ai and A2, are in each instance, same or different, and are optionally substituted aryl;
with a dihalide having the following Formula (III):
x— L2— X
Formula (III)
wherein L2 is, in each instance, selected from the group consisting of optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, and optionally substituted aryl; and X, in each instance, is same or different, and is a halogen.
In another aspect, there is provided an antimicrobial composition comprising a polymer as described herein or a salt or hydrate thereof.
In another aspect, there is provided a method for killing or inhibiting the growth of a microorganism, the method comprising contacting said microorganism ex vivo with an antimicrobial composition as described herein.
In another aspect, there is provided non-therapeutic use of an antimicrobial composition as described herein, for killing or inhibiting the growth of a microorganism ex vivo.
In another aspect, there is provided an antimicrobial composition as described herein for use as an antibiotic.
In another aspect, there is provided a method for treating a microbial infection, the method comprising administering to a subject an antimicrobial composition as described herein.
In another aspect, there is provided use of an antimicrobial composition as described herein, in the manufacture of a medicament for treating a microbial infection.
Brief Description of Drawings
Figure la is a graph showing the efficiency of IBN-AP2 and IBN-OP4 against E. Coli at concentrations of 4 pg/ml of 8 pg/ml. E. coli grew in pure Mueller Hinton Broth (MHB) was used as control. The data are expressed as mean of the surviving colony forming units ± standard deviation of triplicates. Data was obtained in triplicates.
Figure lb is a graph showing the efficiency of IBN-AP4 and IBN-OP3 against E. coli at concentrations of 4 pg/ml or 8 pg/ml. E. coli grew in pure Mueller Hinton Broth (MHB) was used as control. The data are expressed as mean of the surviving colony forming units ± standard deviation. Data was obtained in triplicates.
Figure 2a is a plot of the concentration of the acetal-linked polymer IBN-AP2 over 14 days. The graph depicts the degradation of the IBN-AP2 polymer, measured by incubation the polymer at a concentration of 4 mg/ml in 100 mM Sorenson’s phosphate buffer at pH 6, 7 and 8.
Figure 2b is a plot of the concentration of the acetal-linked polymer IBN-AP4 over 14 days. The graph depicts the degradation of the IBN-AP4 polymer, measured by incubation of the polymer at a concentration of 4 mg/ml in 100 mM Sorenson’s phosphate buffer at pH 6, 7 and 8.
Figure 2c is a plot of the concentration of the orthoformate-linked polymer IBN-OP2 over 14 days. The graph depicts the degradation of the IBN-OP2 polymer, measured by incubation of the polymer at a concentration of 4 mg/ml in lOOmM Sorenson’s phosphate buffer at pH 6, 7 and 8.
Figure 2d is a plot of the concentration of the orthoformate-linked polymer IBN-OP3 over 14 days. The graph depicts the degradation of the IBN-OP3 polymer, measured by incubation of the polymer at a concentration of 4 mg/ml in lOOmM Sorenson’s phosphate buffer at pH 6, 7 and 8. Figure 2e is a plot of the concentration of the orthoformate-linked polymer IBN-OP4 over 14 days. The graph depicts the degradation of the IBN-OP4 polymer, measured by incubation of the polymer at a concentration of 4 mg/ml in lOOmM Sorenson’s phosphate buffer at pH 6, 7 and 8.
Figure 3a is a graph of the change in MIC values of IBN-AP4 in solutions of different pH, against E.coli. The MIC values were measured by dissolving the IBN-AP4 polymer in rain water and Sorenson’s phosphate buffer at pH 6, 7 and 8, respectively. The relative activity of the polymer at a given point is expressed as a fraction of its MIC on day 0 against its MIC at the time of measurement.
Figure 3b is a graph of the change in MIC values of IBN-AP4 in solutions of different pH against S.aureus. The MIC values were measured by dissolving the IBN-AP4 polymer in rain water and Sorenson’s phosphate buffer at pH 6, 7 and 8, respectively. The relative activity of the polymer at a given point is expressed as a fraction of its MIC on day 0 against its MIC at the time of measurement.
Figure 3c is a graph of the change in MIC values of IBN-OP3 in solutions of different pH against E.coli. The MIC values were measured by dissolving the IBN-OP3 polymer in rain water and Sorenson’s phosphate buffer at pH 6, 7 and 8, respectively. The relative activity of the polymer at a given point is expressed as a fraction of its MIC on day 0 against its MIC at the time of measurement.
Figure 3d is a graph of the change in MIC values of IBN-OP3 in solutions of different pH against S.aureus. The MIC values were measured by dissolving the IBN-OP3 polymer in rain water and Sorenson’s phosphate buffer at pH 6, 7 and 8, respectively. The relative activity of the polymer at a given point is expressed as a fraction of its MIC on day 0 against its MIC at the time of measurement.
Figure 4 is a 1H NMR spectra of IBN-OP3 in d6-DMSO at the d 6.5 - 10.3 ppm region. The peaks corresponding to the imidazole (d 6.9 or 7.2 ppm) protons 401 and imidazolium protons 402 (d 9.5-9.4 ppm) are indicated. The area under these peaks were integrated to determine the number of imidazole and imidazolium protons in the polymer. Figure 5a is an overlay of 1H NMR spectra of IBN-AP4 in lOOmM PBS in D20 at pH of 6, measured over the course of 4 days. The degradation of the IBN-AP4 polymer was observed via the disappearance of the dimethyl acetal protons (504) at about d 1.5 -1.7 ppm, and the appearance of the alkene protons (501) of the degradation product.
Figure 5b is a 1H NMR spectrum of the independently prepared F-diol4 in D20, which is postulated to be one of the degradation products.
Figure 5c is a scheme illustrating the degradation of IBN-AP4 to F-diol4 under acidic conditions. The protons which may be used to observe the degradation of IBN-AP4 are assigned accordingly.
Figure 6a is an overlay of 1H NMR spectra of IBN-OP3 in lOOmM PBS in D20 at pH 6, measured over 48 h. The degradation of the IBN-OP3 polymer was observed via the gradual disappearance of the CH3 protons of the orthoformate OCFFC/7; group (604) at about d 1- 1.2 ppm, and appearance of the -CH3 protons of ethyl formate (606), the -CH3 protons of ethanol (605), and the appearance of formate protons (601) at about d 8.0 ppm.
Figure 6b is a 1H NMR spectrum of the independently prepared F-diol3 in D20, which is postulated to be one of the degradation products.
Figure 6c is a scheme illustrating the degradation IBN-OP3 to F-diol3 under acidic conditions. The protons which are used to observe the degradation of IBN-OP3 are assigned accordingly.
Definitions
The following words and terms used herein shall have the meaning indicated:
In the definitions of a number of substituents below it is stated that "the group may be a terminal group or a bridging group". This is intended to signify that the use of the term is intended to encompass the situation where the group is a linker between two other portions of the molecule as well as where it is a terminal moiety. Using the term alkyl as an example, some publications would use the term "alkylene" for a bridging group and hence in these other publications there is a distinction between the terms "alkyl" (terminal group) and "alkylene" (bridging group). In the present application no such distinction is made and most groups may be either a bridging group or a terminal group.
The term "amphiphilic conformation" as used herein refers to a structure having discrete hydrophilic and hydrophobic regions which are arranged alternately in an amphiphilic topology, i.e., the hydrophilic and hydrophobic regions are opposite facing relative to one another.
The term“polymer” as used herein refers to a large molecule, or macromolecule, composed of repeating units. Polymers may comprise at least one repeating unit and may comprise an infinite number of repeating units.
The term "alkyl" as a group or part of a group refers to a straight or branched aliphatic hydrocarbon group having but not limited to, from 1 to 16 carbon atoms, eg, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or 16 carbon atoms, preferably a Ci-Ci6 alkyl, C1-C12 alkyl, more preferably a Ci-Cio alkyl, most preferably C i -C6 alkyl unless otherwise noted. Examples of suitable straight and branched alkyl substituents include but is not limited to, methyl, ethyl, 1- propyl, isopropyl, 1 -butyl, 2-butyl, isobutyl, tert-butyl, amyl, l,2-dimethylpropyl, 1,1- dimethylpropyl, pentyl, isopentyl, hexyl, 4-methylpentyl, l-methylpentyl, 2-methylpentyl, 3- methylpentyl, 2,2-dimethylbutyl, 3,3-dimethylbutyl, l,2-dimethylbutyl, l,3-dimethylbutyl, 5- methylheptyl, l-methylheptyl, octyl, nonyl, decyl, undecyl, 2,2,3 -trimethyl-undecyl, dodecyl, 2,2-dimethyl-dodecyl, tridecyl, 2-methyl-tridecyl, 2-methyltridecyl, tetradecyl, 2-methyl- tetradecyl, pentadecyl, 2-methyl-pentadecyl, hexadecyl, 2-methyl-hexadecyl and the like. The group may be a terminal group or a bridging group. The alkyl may be optionally substituted with one or more groups as defined under the term "optionally substituted" below.
The term "aryl" as a group or part of a group to be interpreted broadly denotes (i) an optionally substituted monocyclic, or fused polycyclic, aromatic carbocycle (ring structure having ring atoms that are all carbon) preferably having from 5 to 12 atoms per ring, wherein the optionally substitution can be di-substitution, or tri- substitution. Examples of aryl groups include phenyl, naphthyl, and the like; (ii) an optionally substituted partially saturated bicyclic aromatic carbocyclic moiety in which a phenyl and a C5-C7 cycloalkyl or C5-C7 cycloalkenyl group are fused together to form a cyclic structure, such as tetrahydronaphthyl, indenyl or indanyl. The group may be a terminal group or a bridging group. Typically an aryl group is a C6-C2o aryl group. The aryl may be optionally substituted with one or more groups as defined under the term "optionally substituted" below.
The term“arene” as used herein refers to hydrocarbons with sigma bonds and delocalized pi electrons between carbon atoms forming a circle. The arene may also refer to an aromatic hydrocarbon. The arene may be monocyclic or polycyclic. The arene may have but not limited to, at least 6 carbon atoms, 6 to 20 carbon atoms, or 6 to 12 carbon atoms. Examples of arene include but not limited to, benzene, methylbenzene, ethylbenzene, xylene, and diethylbenzene. The arene may be optionally substituted with one or more groups as defined under the term "optionally substituted" below.
The term "alkyloxy" or "alkoxy" refers to an alkyl-O- group to be interpreted broadly in which alkyl is as defined herein. The alkyloxy is a Ci-Ci6 alkyloxy, C1-C12 alkyloxy, more preferably a Ci-Cio alkyloxy, most preferably C i -C6 alkyloxy. Examples include, but are not limited to, methoxy, ethoxy and propoxy. The group may be a terminal group or a bridging group. The term alkyloxy may be used interchangeably with the term "alkoxy". The alkyloxy or alkoxy may be optionally substituted with one or more groups as defined under the term "optionally substituted" below.
The term“alkenyl” as a group or part of a group denotes an aliphatic hydrocarbon group containing at least one carbon-carbon double bond and which may be straight or branched having but not limited to, at least 2 carbon atoms, 2-20 carbon atoms, 2-10 carbon atoms, 2-6 carbon atoms, or any number of carbons falling within these ranges, in the normal chain. The group may contain a plurality of double bonds in the normal chain and the orientation about each is independently E, Z, cis or trans where applicable. Exemplary alkenyl groups include, but are not limited to, ethenyl, propenyl, butenyl, pentenyl, hexenyl, heptenyl, octenyl and nonenyl. The group may be a terminal group or a bridging group. The alkenyl may be optionally substituted with one or more groups as defined under the term "optionally substituted" below.
The term "alkynyl" as used herein includes within its meaning unsaturated aliphatic hydrocarbon groups having but not limited to, at least 2 carbon atoms or 2 to 20 carbon atoms, and having at least one triple bond anywhere in the carbon chain. Examples of alkynyl groups include but are not limited to ethynyl, l-propynyl, l-butynyl, 2-butynyl, l-methyl-2- butynyl, 3 -methyl- l-butynyl, l-pentynyl, l-hexynyl, methylpentynyl, l-heptynyl, 2-heptynyl, l-octynyl, 2-octynyl, l-nonyl, l-decynyl, and the like. The group may be a terminal group or a bridging group. The alkynyl may be optionally substituted with one or more groups as defined under the term "optionally substituted" below.
The term“halo” or“halogen” as used herein refers to fluorine, chlorine, bromine and iodine.
The term“dihalide” as used herein refers to compounds containing two halogen atoms, where the two halogen atoms may be same or different, and each of them may be bonded to a carbon atom.
The term“orthoformate linker” as used herein refers to functional groups containing three alkoxy groups attached to one carbon atom. The orthoformate linker may have a general
H o
formula of " , wherein R may be optionally substituted alkyl.
The term“acetal linker” as used herein refers to functional groups containing two alkoxy groups attached to one carbon atom. The acetal linker may have a general formula of
Figure imgf000011_0001
wherein Ri and R2 may be optionally substituted alkyl.
The term“alcohol” as used herein refers to compounds in which the hydroxyl functional group (-OH) is bound to a carbon. The alcohol may have but not limited to, at least 1 carbon atom, 1 to 20 carbon atoms, 1 to 12 carbon atoms, 1 to 6 carbon atoms, 2 to 6 carbon atoms, or 2 to 4 carbon atoms. Examples of alcohol include but not limited to, methanol, ethanol, propan- l-ol, propan-2-ol, 2-methylpropan-l-ol, 2-methylpropan-2-ol, butan-l-ol and butan-2- ol. The alcohol may be optionally substituted with one or more groups as defined under the term "optionally substituted" below.
The term“did” as used herein refers to compounds containing two hydroxyl groups (-OH groups).
The term “minimum inhibitory concentration (MIC)” as used herein refers to the concentration of an antimicrobial agent at which no meaningful microorganism growth was observed. The growth of microorganisms may be detected through cell counting methods; microscopy techniques; by measuring the weight of cells isolated from culture media; or by measuring the turbidity of the culture medium. The turbidity of the culture medium may be measured using a turbidimeter, or by spectroscopic means, such as by determining optical density of the medium at a specific wavelength.
The term“hemolysis” as used herein refers to the rupturing (lysis) of red blood cells and the release of their contents (cytoplasm) into surrounding fluid (e.g. blood plasma). Hemolysis may occur inside or outside the body.
The term“ex vivo” as used herein refers to experimentation or measurements done in or on tissue from an organism in an external environment with minimal alteration of natural conditions.
It is understood that included in the family of compounds of Formula (I) are isomeric forms including diastereoisomers, enantiomers, tautomers, and geometrical isomers in "E" or "Z" configurational isomer or a mixture of E and Z isomers. It is also understood that some isomeric forms such as diastereomers, enantiomers, and geometrical isomers can be separated by physical and/or chemical methods and by those skilled in the art.
Some of the compounds of the disclosed embodiments may exist as single stereoisomers, racemates, and/or mixtures of enantiomers and/or diastereomers. All such single stereoisomers, racemates and mixtures thereof, are intended to be within the scope of the subject matter described and claimed.
The term“optionally substituted” as used herein refers to the group to which this term refers may be unsubstituted, or may be substituted with one or more groups independently selected from alkyl, alkenyl, alkynyl, thioalkyl, cycloalkyl, cycloalkylalkyl, cycloalkenyl, cycloalkylalkenyl, heterocycloalkyl, cycloalkylheteroalkyl, cycloalkyloxy, cycloalkenyloxy, cycloamino, halo, carboxyl, haloalkyl, haloalkynyl, alkynyloxy, heteroalkyl, heteroalkyloxy, hydroxyl, hydroxyalkyl, alkoxy, thioalkoxy, alkenyloxy, haloalkoxy, haloalkenyl, haloalkynyl, haloalkenyloxy, nitro, amino, nitroalkyl, nitroalkenyl, nitroalkynyl, nitroheterocyclyl, alkylamino, dialkylamino, alkenylamine, aminoalkyl, alkynylamino, acyl, alkyloxy, alkyloxyalkyl, alkyloxyaryl, alkyloxycarbonyl, alkyloxycycloalkyl, alkyloxyheteroaryl, alkyloxyheterocycloalkyl, alkenoyl, alkynoyl, acylamino, diacylamino, acyloxy, alkylsulfonyloxy, heterocyclic, heterocycloalkenyl, heterocycloalkyl, heterocycloalkylalkyl, heterocycloalkylalkenyl, heterocycloalkylheteroalkyl, heterocycloalkyloxy, heterocycloalkenyloxy, heterocycloxy, heterocycloamino, haloheterocycloalkyl, alkylsulfinyl, alkylsulfonyl, alkylsulfenyl, alkylcarbonyloxy, alkylthio, acylthio, aminosulfonyl, phosphorus-containing groups such as phosphono and phosphinyl, sulfinyl, sulfinylamino, sulfonyl, sulfonylamino, aryl, heteroaryl, heteroarylalkyl, heteroarylalkenyl, heteroarylheteroalkyl, heteroarylamino, heteroaryloxy, arylalkenyl, arylalkyl, alkylaryl, alkylheteroaryl, aryloxy, arylsulfonyl, cyano, cyanate, isocyanate, - C(0)NH(alkyl), and -C(0)N(alkyl)2. Where the term“substituted” is used, the group to which this term refers to may be substituted with one or more of the same groups mentioned above.
The term“half-life” as used herein refers to the time required for a quantity to reduce to half of its initial value. Specifically, the half-life may be the time required for the concentration of substance to decrease to half of its initial concentration value.
The term "pharmaceutically acceptable salts" as used herein refers to salts that retain the desired biological activity of the above -identified compounds, and include pharmaceutically acceptable acid addition salts and base addition salts. Suitable pharmaceutically acceptable acid addition salts may be prepared from an inorganic acid or from an organic acid. Examples of such inorganic acids are hydrochloric, sulfuric, and phosphoric acid. Appropriate organic acids may be selected from aliphatic, cycloaliphatic, aromatic, heterocyclic carboxylic and sulfonic classes of organic acids, examples of which are formic, acetic, propionic, succinic, glycolic, gluconic, lactic, malic, tartaric, citric, fumaric, maleic, alkyl sulfonic, arylsulfonic. Additional information on pharmaceutically acceptable salts can be found in Remington's Pharmaceutical Sciences, l9th Edition, Mack Publishing Co., Easton, PA 1995. In the case of agents that are solids, it is understood by those skilled in the art that the inventive compounds, agents and salts may exist in different crystalline or polymorphic forms, all of which are intended to be within the scope of the present disclosure and specified formulae.
The term "therapeutically effective amount" or "effective amount" as used herein refers to an amount sufficient to effect beneficial or desired clinical results. An effective amount can be administered in one or more administrations. An effective amount is typically sufficient to palliate, ameliorate, stabilize, reverse, slow or delay the progression of the disease state.
The term "microorganism" as used herein, refers broadly to both eukaryotic and prokaryotic organisms possessing a cell membrane, including but not limited to, bacteria, yeasts, fungi, plasmids, algae and protozoa.
The word "substantially" does not exclude "completely" e.g. a composition which is "substantially free" from Y may be completely free from Y. Where necessary, the word "substantially" may be omitted from the definition of the invention.
Unless specified otherwise, the terms "comprising" and "comprise", and grammatical variants thereof, are intended to represent "open" or "inclusive" language such that they include recited elements but also permit inclusion of additional, unrecited elements.
As used herein, the term "about", in the context of concentrations of components of the formulations, typically means +/- 5% of the stated value, more typically +/- 4% of the stated value, more typically +/- 3% of the stated value, more typically, +/- 2% of the stated value, even more typically +/- 1% of the stated value, and even more typically +/- 0.5% of the stated value.
Throughout this disclosure, certain embodiments may be disclosed in a range format. It should be understood that the description in range format is merely for convenience and brevity and should not be construed as an inflexible limitation on the scope of the disclosed ranges. Accordingly, the description of a range should be considered to have specifically disclosed all the possible sub-ranges as well as individual numerical values within that range. For example, description of a range such as from 1 to 6 should be considered to have specifically disclosed sub-ranges such as from 1 to 3, from 1 to 4, from 1 to 5, from 2 to 4, from 2 to 6, from 3 to 6 etc., as well as individual numbers within that range, for example, 1, 2, 3, 4, 5, and 6. This applies regardless of the breadth of the range.
Certain embodiments may also be described broadly and generically herein. Each of the narrower species and subgeneric groupings falling within the generic disclosure also form part of the disclosure. This includes the generic description of the embodiments with a proviso or negative limitation removing any subject matter from the genus, regardless of whether or not the excised material is specifically recited herein.
Detailed Disclosure of Optional Embodiments
Exemplary, non-limiting embodiments of a polymer of Formula (I) will now be disclosed.
In one aspect, the present polymer may be of Formula (I):
Figure imgf000015_0001
Formula (I)
wherein
Fi has the following structure:
Figure imgf000015_0002
wherein Ri and R2 are, in each instance, same or different, and are independently selected from the group consisting of hydrogen, optionally substituted alkyl, and optionally substituted alkoxy; Ai and A2, are in each instance, same or different, and are optionally substituted aryl; L2 is, in each instance, selected from the group consisting of optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, and optionally substituted aryl; X, in each instance, is same or different, and is a halogen; n is an integer of at least 1; or a salt or hydrate thereof.
In some embodiments of the polymer of Formula (I), Ri and R2 may, in each instance, be same or different, and be independently selected from the group consisting of hydrogen and optionally substituted alkoxy. The alkoxy may be a liner or a branched group. The alkoxy may be a C1-C16 alkoxy, a Ci-Ci2 alkoxy, more preferably a C1-C10 alkoxy, most preferably a C|-Cx alkoxy. Preferably, the Ci-C8 alkoxy may be methoxy, ethoxy, propoxy isopropoxy, 1- butoxy, 2-butoxy or isobutoxy. In preferred embodiments, at least one of Ri and R2 may be selected from C|-C8 alkoxy. In more preferred embodiments, Ri may be hydrogen and R2 may be selected from methoxy, ethoxy, propoxy, or isopropoxy. In most preferred embodiments, Ri is hydrogen and R2 is ethoxy. In embodiments, an orthoformate linker may be formed in Fi structure in the polymer of Formula (I). Advantageously, the polymer of Formula (I) as described herein may be capable of being cleaved at the position of the orthoformate linker so as to being degradable under a neutral to acidic condition where pH is no more than 8. In certain embodiments, under the condition of pH 6, the polymer having orthoformate linker may have a half-life of less than 24 hours, or preferably less than 9 hours. In certain embodiments, under the condition of pH 7, the polymer having orthoformate linker may have a half-life of less than 72 hours, preferably less than 15 hours, or more preferably less than 12 hours. In certain embodiments, under the condition of pH 8, the polymer having orthoformate linker may have a half-life of less than 20 days, less than 8 days, or preferably less than 6 days. In one embodiment, more than 90% of the polymer may have been degraded after 90 days.
In some other embodiments of the polymer of Formula (I), Ri and R2 may be, in each instance, same or different, and be independently selected from optionally substituted alkyl. The alkyl may be a liner or a branched group. The alkyl may be a Ci-Ci6 alkyl, a C1-C12 alkyl, more preferably a C1-C10 alkyl, most preferably a Ci-C8 alkyl. Preferably, the C|-C8 alkyl may be methyl, ethyl, 1 -propyl, isopropyl, 1 -butyl, 2-butyl, or isobutyl. In preferred embodiments, Ri and R2 may be same and be selected from methyl, ethyl, 1 -propyl, or isopropyl. In more preferred embodiments, Ri and R2 are methyl. In embodiments, an acetal linker may be formed in Li structure in the polymer of Formula (I).
Advantageously, the polymer of Formula (I) as described herein may be capable of being cleaved at the position of the acetal linker so as to be degradable under neutral to acidic conditions, for example, conditions where pH is no more than 8. In certain embodiments, under conditions of pH 6, the polymer having an acetal linker may have a half-life of less than 30 hours, or preferably less than 6 hours. In certain embodiments, under conditions of pH 7, the polymer having acetal linker may have a half-life of less than 72 hours, or preferably less than 10 hours. In certain embodiments, under the condition of pH 8, the polymer having acetal linker may have a half-life of less than 12 days, or preferably less than 6 days.
Also advantageously, the polymer of Formula (I) as described herein may show improved or comparable antimicrobial activity with known non-degradable antimicrobial analogues. This may be attributed to the structure of Li. Without being bound by theory, an imidazolium main chain in an amphiphilic conformation. The amphiphilic conformation having hydrophobic regions and hydrophilic regions arranged alternately may be formed by imidazole rings serving as hydrophilic regions, and Li serving as hydrophobic regions. Such imidazolium main chain in an amphiphilic conformation may facilitate the antimicrobial activity of the polymer.
In the polymer of Formula (I), Ai and A2 may be, in each instance, same or different, and be independently selected from optionally substituted aryl. In preferred embodiments, Ai and A2 may be selected from C8-C2o aryl group. The C8_C2o aryl may be derived from an arene. The arene may be a monocyclic arene or a polycyclic arene. Preferably, the arene may be a monocyclic arene. Preferably, the monocyclic arene may be selected from benzene, methylbenzene, ethylbenzene, xylene, or diethylbenzene. In more preferred embodiments, Ai and A2 may be independently selected from xylylene, which is an aryl group derived from diethylbenzene. In most preferred embodiments, Ai and A2 are same and are selected from ortho-xylylene or para- xylylene.
Advantageously, the polymer of Formula (I) where Ai and A2 are para-xylylene may exhibit a shorter degradation period under neutral or acidic condition compared to the polymer where Ai and A2 are ortho-xylylene. Under acidic condition, specifically at pH of 6, the half-life of the polymer having para-xylylene groups may be about 60%-80% shorter than that of the polymer having ortho-xylylene groups, showing a faster degradation speed. Under the condition of pH 8, the polymer of Formula (I) may display similar stability, where Ai and A2 groups may have less influences on the half-lives of the polymers.
In one preferred embodiment, Li may be provided where Ri is H, R2 is ethoxy, and Ai and A2 are para-xylylene. In another preferred embodiment, Li may be provided where Ri is H, R2 is ethoxy, and Ai and A2 are ortho-xylylene. In a further preferred embodiment, Li may be provided where Ri and R2 are methyl and Ai and A2 are para-xylylene. In yet another preferred embodiment, Li may be provided where Ri and R2 are methyl, and Ai and A2 are ortho-xylylene.
Advantageously, the present polymer of Formula (I) having the linker Li as described herein may exhibit retained or improved antimicrobial activity against a broad range of microbes and possess degradation properties under neutral or acidic condition compared to the known non-degradable antimicrobial analogues. In preferred embodiments, the minimum inhibitory concentration (MIC) value of the polymer as described herein may be substantially equal to that of known non-degradable antimicrobial analogues. In more preferred embodiments, the MIC value may be at least 50%, or at least 75%, or preferably about 90% less than that of known non-degradable antimicrobial analogues.
In the polymer of Formula (I), L2 may be, in each instance, selected from the group consisting of optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, and optionally substituted aryl. In embodiments, L2 may be selected from optionally substituted alkenyl or optionally substituted aryl. The alkenyl may be a C2- C 16 alkenyl, a C2-Ci2 alkenyl, more preferably a C2-Cio alkenyl, most preferably a C2-C8 alkenyl. The C2-C8 alkenyl may be butenyl. Preferably, the butenyl may be 2-trans-butenyl or 2-cis-butenyl. The aryl may be a C8_C2o aryl group. Preferably, the C8_C2o aryl substituent may be xylylene. In preferred embodiments, L2may be xylylene or butenyl. In more preferred embodiments, L2 is selected from the group consisting of:
Figure imgf000018_0001
Advantageously, L2 as described herein may provide a hydrophobic region to form an amphiphilic conformation in the present polymer. Without being bound to theory, this may further contribute to the antimicrobial activity of the polymer.
In the polymer of Formula (I), X may be, in each instance, same or different, and be a halogen. The halogen may be selected from the group consisting of chlorine, fluorine, bromine and iodine. In one embodiment, X is bromine.
In the polymer of Formula (I), n may be an integer of at least 1. Preferably, n may be an integer from 1 to 100, 1 to 50, 1 to 30, 1 to 15, 2 to 15, or 3 to 15. More preferably, n may be
3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15. Most preferably, n may be 7.
In embodiments, the polymer of Formula (I) as described herein may be selected from the group consisting of:
Figure imgf000020_0001
Advantageously, the polymers IBN-AP1 to GBN-AR5 and IBN-OP1 to IBN-OP5 as described herein may be capable of being degraded under neutral or acidic conditions. Accordingly, the polymer may not be retained or entrained in the natural environment. This may reduce the bioaccumulation of antimicrobials in the ecosystem, which is critical for reducing, preventing or avoiding the development of antimicrobial-resistant microbes. More advantageously, the disclosed polymer has been found to exhibit retained or improved antimicrobial activity against a plurality of microorganisms compared to known non-degradable antimicrobial analogues.
In preferred embodiments, the polymers IBN-AP2, IBN-AP4, IBN-OP2, IBN-OP3 and IBN- OP4 may advantageously exhibit retained or improved antimicrobial activity. Specifically, the MIC values of these polymers may be substantially equal to or lower than that of known non-degradable antimicrobial analogues against the same species of microorganism, showing improved antimicrobial activity. In preferred embodiments, the MIC value may be about 50- 90% lower than that of the known non-degradable antimicrobial analogues. In more preferred embodiments, the MIC value may be about 90% lower than that of the known non- degradable antimicrobial analogues. More specifically, the polymers may display antimicrobial activity even at a low concentration of 4 pg/ml. Also advantageously, the polymers as described herein may have less than 10% hemolysis even at a highest concentration of 2000 pg/ml, demonstrating low toxicity.
In more preferred embodiments, the polymers IBN-AP4 and IBN-OP3 may advantageously show improved or comparable antimicrobial activity to that of known non-degradable antimicrobial analogues, while possessing degradation properties under neutral or acidic condition. Specifically, the polymers may show a faster killing speed against the microorganisms. In one embodiment, the microorganism population may be reduced to about 1% within 10 minutes. In another embodiment, the microorganism population may be reduced to about 0.1% within 180 minutes.
Advantageously, the polymer of Formula (I) as described herein may be capable of being cleaved at Li under neutral or acidic conditions. The neutral condition may be at a pH of no less than 7 and no more than 8. Preferably, the neutral condition may be at pH 7 or pH 8. The acidic condition may be at a pH of less than 7. Preferably, the acidic condition may be at pH 6, pH 5, pH 4, pH 3, pH 2, or pH 1. More preferably, the acidic condition may be mildly acidic. Most preferably, the mildly acidic condition may be at a pH of 6.
More advantageously, the degradation products of the polymers as described herein may have weak or substantially no antimicrobial activity against microorganisms, resulting in little or substantially no antibiotic residues passing into the ecosystem. Even more advantageously, the degradation products may demonstrate low toxicity with less than 10% hemolysis even at a highest concentration of 2000 pg/ml.
Without being bound by theory, the degradation products of the polymer may comprise di- imidazolium fragments and small molecules. Preferably, the di-imidazolium fragment may be a diol. The small molecule may be a ketone, ester, carboxylic acid or alcohol. Preferably, the small molecule may be acetone, ethyl formate, formic acid and ethanol.
In another aspect, there is provided a method for preparing the polymer of Formula (I) as described herein, comprising the step of:
contacting a di-imidazole having Formula (II):
Figure imgf000022_0001
Formula (II)
wherein Li has the following structure:
Figure imgf000022_0002
wherein Ri and R2 are, in each instance, same or different, and are independently selected from the group consisting of hydrogen, optionally substituted alkyl, and optionally substituted alkoxy; and Ai and A2, are in each instance, same or different, and are optionally substituted aryl;
with a dihalide having Formula (III):
x— L2— X
Formula (III)
wherein L2 is, in each instance, selected from the group consisting of optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, and optionally substituted aryl; and X, in each instance, is same or different, and is a halogen.
In embodiments, the di-imidazole of Formula (II) may be selected from the group consisting of:
Figure imgf000022_0003
In embodiments, the dihalide of Formula (III) may be selected from the group consisting of:
Figure imgf000022_0004
In another aspect, an antimicrobial composition may comprise the polymer of Formula (I) as described herein.
In some embodiments, the antimicrobial composition may be used for non-therapeutic applications. Preferably, the non-therapeutic applications may comprise environmental disinfections. More preferably, the non-therapeutic applications may comprise pesticidal, agricultural, or horticultural use.
In preferred embodiments, the present application provides a method for killing or inhibiting the growth of a microorganism ex vivo. The method may comprise contacting said microorganism ex vivo with the antimicrobial composition as described herein in an effective amount. Preferably, the method may comprise contacting the antimicrobial composition with inanimate surfaces. Non limiting examples of inanimate surfaces may include surfaces of medical devices, hospital interior surfaces, textiles, food packaging, children's toys, or electrical appliances.
In preferred embodiments, the present application provides non-therapeutic use of the antimicrobial composition as described herein. The non-therapeutic use may comprise killing or inhibiting the growth of a microorganism ex vivo. Preferably, the non-therapeutic use may comprise contacting the antimicrobial composition with inanimate surfaces. Non-limiting examples of inanimate surfaces may include surfaces of medical devices, hospital interior surfaces, textiles, food packaging, children's toys, or electrical appliances.
The microorganism may be selected from a bacterium, a fungus, or a mixture thereof. The bacterium may be a Gram-positive bacterium or a Gram-negative bacterium. The Gram positive bacterium may be selected from Staphylococcus aureus, Staphylococcus argenteus, Staphylococcus schweitzeri, Staphylococcus simiae, or the mixture thereof. The Gram negative bacterium may be selected from Pseudomonas aeruginosa, Pseudomonas polycolor , Pseudomonas vendrelli, Escherichia coli, Escherichia fergusonii, Escherichia hermannii, Escherichia vulneris, or the mixture thereof. The fungus may be yeast selected from Candida albicans, Candida glabrata, Candida tropicalis, or the mixture thereof. In preferred embodiments, the microorganism may be selected from Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, Candida albicans, or the mixture thereof. When the microorganism is contacted with the antimicrobial composition in an effective amount, the microorganism population may be reduced to in the range of about 1% to about 0.1%, in the range of about 0.5% to about 0.1%, preferably to about 0.5%, more preferably to about 0.1%.
The concentration of the antimicrobial composition as described herein may be in the range of about 1 pg/ml to about 300 pg/ml, about 1 pg/ml to about 200 pg/ml, about 1 pg/ml to about 100 pg/ml, about 1 pg/ml to about 80 pg/ml, about 1 pg/ml to about 62 pg/ml, about 1 pg/ml to about 31 pg/ml, about 1 pg/ml to about 16 pg/ml, about 1 pg/ml to about 8 pg/ml, about 2 pg/ml to about 300 pg/ml, about 2 pg/ml to about 200 pg/ml, about 2 pg/ml to about 100 pg/ml, about 2 pg/ml to about 80 pg/ml, about 2 pg/ml to about 62 pg/ml, about 2 pg/ml to about 31 pg/ml, about 2 pg/ml to about 16 pg/ml, about 2 pg/ml to about 8 pg/ml, about 4 pg/ml to about 300 pg/ml, about 4 pg/ml to about 200 pg/ml, about 4 pg/ml to about 100 pg/ml, about 4 pg/ml about 80 pg/ml, about 4 pg/ml to about 62 pg/ml, preferably about 4 pg/ml to about 31 pg/ml, more preferably about 4 pg/ml to about 16 pg/ml, or most preferably about 4 pg/ml to about 8 pg/ml. Preferably, the concentration may be 4 pg/ml or 8 pg/ml.
The reduction of the microorganism population may be achieved within a duration of about 0.5 minutes to about 360 minutes, about 0.5 minutes to about 180 minutes, about 0.5 minutes to about 60 minutes, about 0.5 minutes to about 10 minutes, about 1 minute to about 360 minutes, about 1 minute to about 180 minutes, about 1 minute to about 60 minutes, about 1 minute to about 10 minutes, about 2 minutes to about 360 minutes, about 2 minutes to about 180 minutes, about 2 minutes to about 60 minutes, about 2 minutes to about 10 minutes, about 5 minutes to about 360 minutes, about 5 minutes to about 180 minutes, about 5 minutes to about 60 minutes, or about 5 minutes to about 10 minutes. Preferably, the reduction of the microorganism activity may be achieved within 10 minutes.
In some other embodiments, the antimicrobial composition may be used for therapeutic applications. In preferred embodiments, the antimicrobial composition as described herein may further comprise pharmaceutically acceptable salts. Preferably, the antimicrobial composition may be used as an antibiotic to treat a microbial infection. The antimicrobial composition may kill or inhibit the growth of a microorganism so as to treat the microbial infection. In preferred embodiments, the present application provides a method for treating a microbial infection. The method may comprise administering to a subject the antimicrobial composition as described herein in a therapeutically effective amount. The subject may be a human or animal body. The microbial infection may be caused by one or more microorganism.
In preferred embodiments, the present application provides use of the antimicrobial composition as described herein, in the manufacture of a medicament for treating a microbial infection. The microbial infection may be caused by one or more microorganism.
The microorganism may be selected from a bacterium, a fungus, or the mixture thereof. The bacterium may be a Gram-positive bacterium or a Gram-negative bacterium. The Gram positive bacterium may be selected from Staphylococcus aureus, Staphylococcus argenteus, Staphylococcus schweitzeri, Staphylococcus simiae, or the mixture thereof. The Gram negative bacterium may be selected from Pseudomonas aeruginosa, Pseudomonas polycolor , Pseudomonas vendrelli, Escherichia coli, Escherichia fergusonii, Escherichia hermannii, Escherichia vulneris, or the mixture thereof. The fungus may be yeast selected from Candida albicans, Candida glabrata, Candida tropicalis, or the mixture thereof. In preferred embodiments, the microorganism may be selected from Staphylococcus aureus, Escherichia coli, Pseudomonas aeruginosa, Candida albicans, or the mixture thereof.
When the microorganisms are contacted with the antimicrobial composition in a therapeutically effective amount, the microorganism population may be reduced to in the range of about 1% to about 0.1%, in the range of about 0.5% to about 0.1%, preferably to about 0.5%, more preferably to about 0.1%.
The concentration of the antimicrobial composition as described herein may be in the range of about 1 pg/ml to about 300 pg/ml, about 1 pg/ml to about 200 pg/ml, about 1 pg/ml to about 100 pg/ml, about 1 pg/ml to about 80 pg/ml, about 1 pg/ml to about 62 pg/ml, about 1 pg/ml to about 31 pg/ml, about 1 pg/ml to about 16 pg/ml, about 1 pg/ml to about 8 pg/ml, about 2 pg/ml to about 300 pg/ml, about 2 pg/ml to about 200 pg/ml, about 2 pg/ml to about 100 pg/ml, about 2 pg/ml to about 80 pg/ml, about 2 pg/ml to about 62 pg/ml, about 2 pg/ml to about 31 pg/ml, about 2 pg/ml to about 16 pg/ml, about 2 pg/ml to about 8 pg/ml, about 4 pg/ml to about 300 pg/ml, about 4 pg/ml to about 200 pg/ml, about 4 pg/ml to about 100 pg/ml, about 4 pg/ml about 80 pg/ml, about 4 pg/ml to about 62 pg/ml, preferably about 4 pg/ml to about 31 pg/ml, more preferably about 4 pg/ml to about 16 pg/ml, or most preferably about 4 pg/ml to about 8 pg/ml. Preferably, the concentration may be 4 pg/ml or 8 pg/ml.
The reduction of the microorganism activity may be achieved within a duration of about 0.5 minutes to about 360 minutes, about 0.5 minutes to about 180 minute, about 0.5 minutes to about 60 minutes, about 0.5 minutes to about 10 minutes, about 1 minute to about 360 minutes, about 1 minute to about 180 minutes, about 1 minute to about 60 minutes, about 1 minute to about 10 minutes, about 2 minutes to about 360 minutes, about 2 minutes to about 180 minutes, about 2 minutes to about 60 minutes, about 2 minutes to about 10 minutes, about 5 minutes to about 360 minutes, about 5 minutes to about 180 minutes, about 5 minutes to about 60 minutes, or about 5 minutes to about 10 minutes. Preferably, the reduction of the microorganism activity may be achieved within 10 minutes.
Examples
Synthesis of Imidazolium Polymers
Figure imgf000026_0001
Scheme 1. Synthetic schemes of acid- sensitive degradable imidazolium polymers.
The synthesis of new imidazolium polymers was carried out via the preparation of di imidazole monomer units (compounds 1-4) containing potential acid-sensitive degradable linkers. The final polymers were prepared by condensing di-imidazoles with dibromides 5, 6 or 7 to give imidazolium polymers IBN-AP1, 2, 3, 4 and 5, and IBN-OP1, 2, 3, 4 and 5. Further details are provided in the examples below.
General Information
All anhydrous solvents were purchased from Sigma-Aldrich and used without further purification. All other reagents were used as received, except where otherwise noted in the experimental text.
Analytical thin layer chromatography (TLC) was performed using Merck 60 F-254 silica gel plates with visualization by ultraviolet light (254 nm) and/or heating the plate after staining with a solution of 20% KMn04 w/v in H20. Flash column chromatography was carried out on Kieselgel 60 (0.040-0.063 mm) supplied by Merck under positive pressure.
H and C nuclear magnetic resonance (NMR) spectra were recorded on Bruker AV-400 (400 MHz) spectrometer. Chemical shifts (d) are reported in parts per million (ppm) with the residual solvent peak of tetramethylsilane used as the internal standard at 0.00 ppm. 1H NMR data are reported in the following order: chemical shift, multiplicity (br = broad, s = singlet, d = doublet, t = triplet, q = quartet and m = multiplet), coupling constants (J, Hz), integration and assignment. High resolution mass spectra (HRMS) were recorded on a Bruker MicroTOF-Q system. The samples were directly injected into the chamber at 20 pL min-l. Typical instrument parameters: capillary voltage, 4 kV; nebulizer, 0.4 bars; dry gas, 2 L-min- 1 at 120 °C; m/z range, 40 - 3000.
List of Abbreviations
THF - Tetrahydrofuran
PTFE - Polytetrafluoroethylene
TsOH - para-toluenesulfonic acid
DMSO- dimethylsulfoxide
MHB - Mueller Hinton Broth
YM - Yeast Mold broth
CFU - Colony Forming Units
PBS - Phosphate Buffer Saline MeOH - Methanol
OD - Optical Density
eq. - equivalent
Example 1 - Synthesis of Acetal Linkers
Figure imgf000028_0002
General Procedure:
Alcohol 8 or 9 (1.0 eq), 2,2-dimethoxypropane (0.8-1.0 eq) and p-TsOH H20 (10 mol%) were suspended in toluene/cyclohexane (1:1 v/v, 0.25 M) in a round -bottom flask fitted with a pressure-equalising dropping funnel loaded with 5A molecular sieves (370 mg/mmol). A reflux condenser was fitted over the dropping funnel and the atmosphere within the reaction apparatus was exchanged for Ar. The mixture was heated at 150 °C, ensuring the refluxing solvent condensed over the molecular sieves before returning to the reaction mixture. After 16 h, the reaction mixture was cooled to room temperature and concentrated in vacuo. The solids were purified by column chromatography to obtain the acetal linkers as colourless oils.
Example 1.1 Synthesis of Acetal Linker 1
Figure imgf000028_0001
Acetal linker 1 was prepared by the general procedure from alcohol 8 (527 mg, 2.80 mmol) and 2,2-dimethoxypropane (295 pL, 2.39 mmol) and isolated by column chromatography (2% MeOH/CHCl3) as a yellow oil (225 mg, 41%). 1H NMR (400 MHz, CDCl3) d 7.54 (s, 2H, ImH), 7.32 (d, 4H, / = 7.5 Hz, ArH), 7.12 (d, 4H, / = 7.5 Hz, ArH), 7.08 (s, 2H, ImH), 6.89 (t, 2H, / = 1.0 Hz, ImH), 5.10 (s, 4H, 2 x NCH2), 4.54 (s, 4H, 2 x OCH2), 1.51 (s, 6H, 2 x CH3); 13C NMR (101 MHz, CDCl3) d 139.0, 137.4, 135.2, 129.8, 127.9, 127.4, 119.2, 100.9, 62.7, 50.5, 25.2. Example 1.2 Synthesis of Acetal Linker 2
Figure imgf000029_0001
Acetal linker 2 was prepared by the general procedure from alcohol 9 (1.00 g, 5.31 mmol) and 2,2-dimethoxypropane (650 pL, 5.31 mmol) and isolated by column chromatography (5% MeOH/CHCL) as a colourless oil (502 mg, 45%). 1H NMR (400 MHz, CDCl3) d 7.47 (s, 2H, ImH), 7.33-7.28 (m, 6H, ArH), 7.07 (t, 2H, / = 1.0 Hz, ImH), 7.00-6.98 (m, 2H, ArH), 6.85 (t, 2H, / = 1.0 Hz, ImH), 5.15 (s, 4H, 2 x NCH2), 4.44 (s, 4H, 2 x OCH2), 1.49 (s, 6H, 2 x CH3); 13C NMR (101 MHz, CDCI3) d 137.6, 136.3, 134.6, 129.7, 129.1, 128.5, 119.5, 101.3, 61.3, 48.1, 25.1.
Example 2 - Synthesis of Orthoformate Linker
Figure imgf000029_0002
General Procedure:
Alcohol 8 or 9 (1.0 eq), 2,2-dimethoxypropane (0.8-1.0 eq) and p-TsOH H20 (10 mol%) were suspended in toluene/cyclohexane (1:1 v/v, 0.25 M) in a round -bottom flask fitted with a pressure-equalising dropping funnel loaded with 5A molecular sieves (370 mg/mmol). A reflux condenser was fitted over the dropping funnel and the atmosphere within the reaction apparatus was exchanged for Ar. The mixture was heated at 150 °C, ensuring the refluxing solvent condensed over the molecular sieves before returning to the reaction mixture. After 16 h, the reaction mixture was cooled to room temperature and concentrated in vacuo. The solids were purified by column chromatography to obtain the acetal linkers as colourless oils. Example 2.1 Synthesis of Orthoformate Linker 3
Figure imgf000030_0001
Orthoformate linker 3 was prepared by the general procedure from alcohol 8 (500 mg, 2.66 mmol) and triethylorthoformate (440 pL, 2.66 mmol) and isolated by column chromatography (2 to 10% MeOH/CH2Cl2) as a colourless oil (148 mg, 26%). 1H NMR (400 MHz, CDCl3) d 7.54 (s, 2H, ImH), 7.33 (d, 4H, / = 7.5 Hz, ArH), 7.13 (d, 4H, / = 7.5 Hz, ArH), 7.09 (s, 2H, ImH), 6.89 (s, 2H, ImH), 5.35 (s, 1H, CH(OEt)), 5.11 (s, 4H, 2 x NCH2), 4.64 (s, 4H, 2 x OCH2), 3.65 (q, 2H, J = 7.0 Hz, OC//2CH3), 1.23 (t, 3H, J = 7.0 Hz, OCH2CH3 ); 13C NMR (101 MHz, CDCI3) d 137.7, 137.4, 135.6, 129.8, 128.3, 127.4, 119.2, 111.8, 65.3, 60.6, 50.5, 14.9.
Example 2.2 Synthesis of Orthoformate Linker 4
Figure imgf000030_0002
Orthoformate linker 4 was prepared by the general procedure from alcohol 9 (500 mg, 2.66 mmol) and triethylformate (440 pF, 2.66 mmol) and isolated by column chromatography (3®5% MeOH/CHCl3) as a colourless oil (200 mg, 35%). 1H NMR (400 MHz, CDCI3) d 7.48 (s, 2H, ImH), 7.33-7.30 (m, 6H, ArH), 7.06 (t, 2H, / = 1.0 Hz, ImH), 7.02-6.99 (m, 2H, ArH), 6.85 (t, 2H, / = 1.0 Hz, ImH), 5.31 (s, 1H, CH(OEt)), 5.19 (s, 4H, 2 x NCH2), 4.59- 4.58 (m, 4H, 2 x OCH2), 3.60 (q, 2H, J = 7.0 Hz, OC//2CH3), 1.23 (t, 3H, J = 7.0 Hz, OCH2CH3 ); 13C NMR (101 MHz, CDCI3) d 137.6, 135.0, 134.9, 129.9, 129.6, 129.0, 128.6, 128.5, 119.4, 112.0, 63.9, 61.0, 47.9, 14.9.
Example 3 - Synthesis of Imidazolium Polymers
General Procedure:
The acetal or orthoformate degradable linker (1-4) (1.0 eq) and butenyl or xylyl dibromide (5-7) (1.0 eq) were dissolved in THF (0.2 M) in a 20-mL vial sealed with a PTFE crimp-on cap. The solution was stirred for 1 hour with heating in a pre -heated DrySyn® heating block. The reaction mixture was transferred to a !5-mL Falcon® tube, dissolved in the minimum volume of methanol, then precipitated with ether to form a milky white suspension. The solids were spun down in a centrifuge (7000 rpm, 3 min), and the supernatant decanted. The solids were washed once more and the resulting solids were dried in a vacuum oven (50 °C, 10 mbar) for 16 h to yield the imidazolium polymers as white solids.
Example 3.1 Synthesis of IBN Acetal Polymer 1, IBN-AP1
Figure imgf000031_0001
IBN Acetal Polymer 1, IBN-AP1 was prepared by the general procedure from acetal linker 1 (100 mg, 0.24 mmol) and ira«5-l,4-dibromobutene (52 mg, 0.24 mmol) and isolated as a white crushable foam (132 mg, 87%). 1H NMR (400 MHz, <76-DMSO) d 9.52 (br s, 2H, ImH), 7.92-7.87 (m, 2H, ImH), 7.84-7.80 (m, 2H, ImH), 7.46-7.31 (m, 8H, 2 x PhH), 6.07 (br s, 2H, 2 x CH), 5.49 (br s, 4H, 2 x NCH2), 4.93 (br s, 4H, 2 x CHCH2), 4.52 (br s, 4H, 2 x OCH2), 1.43 (s, 6H, 2 x CH3); 13C NMR (101 MHz, d6- DMSO) d 140.1, 136.7, 134.2, 129.7, 129.0, 128.4, 123.3, 123.1, 100.9, 62.6, 52.1, 50.1, 25.4.
Example 3.2 Synthesis of IBN Acetal Polymer 2. IBN-AP2
Figure imgf000031_0002
IBN Acetal Polymer 2, IBN-AP2 was prepared by the general procedure from acetal linker 1 (100 mg, 0.24 mmol) and a,a’-dibromo-p-xylylene (63 mg, 0.24 mmol) and isolated as a white crushable foam (154 mg, 96%). 1H NMR (400 MHz, i/6-DMSO) d 9.50 (br s, 2H, ImH), 7.83 (br s, 4H, ImH), 7.50-7.42 (m, 12H, 3 x p-PhH), 5.43 (m, 8H, 4 x NCH2), 4.51 (m, 4H, 2 x OCH2), 1.42 (s, 6H, 2 x CH3).
Example 3.3 Synthesis of IBN Acetal Polymer 3, IBN-AP3
Figure imgf000031_0003
IBN Acetal Polymer 3, IBN-AP3 was prepared by the general procedure from acetal linker 1 (100 mg, 0.24 mmol) and a,a’-dibromo-o-xylylene (63 mg, 0.24 mmol) and isolated as a white crushable foam (157 mg, 96%). 1H NMR (400 MHz, <76-DMSO) d 9.48-9.33 (m, 2H, ImH), 7.86-7.72 (m, 4H, ImH), 7.49-7.22 (m, 12H, 2 x p- PhH + o-PhH), 5.66-5.59 (m, 4H, 2 x NCH2), 5.45-5.37 (m, 4H, 2 x NCH2), 4.51 (br s, 4H, 2 x OCH2), 1.41 (s, 6H, 2 x CH3).
Example 3.4 Synthesis of IBN Acetal Polymer 4, IBN-AP4
Figure imgf000032_0001
IBN Acetal Polymer 4, IBN-AP4 was prepared by the general procedure from acetal linker 2 (100 mg, 0.24 mmol) and ira«5-l,4-dibromobutene (52 mg, 0.24 mmol) and isolated as a white crushable foam (74 mg, 49%). 1H NMR (400 MHz, <76-DMSO) d 9.42 (br s, 2H, ImH), 7.89-7.84 (m, 4H, ImH), 7.48-7.37 (m, 6H, o-PhH), 7.19-7.17 (m, 2H, o-PhH), 6.12 (br s, 2H, 2 x CH), 5.60 (br s, 4H, 2 x NCH2), 4.98 (br s, 4H, 2 x CHC/¾, 4.61 (br s, 4H, 2 x OCH2), 1.46 (s, 6H, 2 x CH3); 13C NMR (101 MHz, d6- DMSO) d 137.2, 133.7, 129.8, 129.3, 128.9, 123.6, 123.2, 101.4, 61.5, 50.1, 49.8, 25.2.
Example 3.5 Synthesis of IBN Acetal Polymer 5, IBN-AP5
Figure imgf000032_0002
IBN Acetal Polymer 5, IBN-AP5 was prepared by the general procedure from acetal linker 2 (100 mg, 0.24 mmol) and a,a’-dibromo-o-xylylene (63 mg, 0.24 mmol) and isolated as a white crushable foam (78 mg, 48%). 1H NMR (400 MHz, <76-DMSO) d 9.51 (br s, 2H, ImH), 7.92-7.86 (m, 4H, ImH), 7.49-7.38 (m, 8H, o-PhH), 7.30-7.28 (m, 2H, o-PhH), 7.19-7.16 (m, 2H, o-PhH), 5.77 (br s, 4H, 2 x NCH2), 5.61 (br s, 4H, 2 x NCH2), 4.60 (br s, 4H, 2 x OCH2), 1.44 (s, 6H, 2 x CH3).
Example 3.6 Synthesis of IBN Orthoformate Polymer E IBN-OP1
Figure imgf000032_0003
IBN Orthoformate Polymer 1, IBN-OP1 was prepared by the general procedure from orthoformate linker 3 (77 mg, 0.18 mmol) and irans- 1 ,4-dibromobutcnc (38 mg, 0.18 mmol) and isolated as an off-white foam (94 mg, 82%). 1H NMR (400 MHz, <76-DMSO) d 9.55-9.32 (m, 2H, ImH), 7.87-7.74 (m, 4H, ImH), 7.47-7.30 (m, 8H, 2 x PhH), 6.05 (br s, 2H, 2 x CH), 5.48-5.41 (m, 5H, C//(OEt) + 2 x NCH2), 4.91 (br s, 4H, 2 x CHC/¾), 4.64-4.49 (m, 4H, 2 x OCH2), 3.58 (q, 2H, J = 7.0 Hz, OC/¾CH3), 1.12 (t, 3H, J = 7.0 Hz, OCH2C//3); 13C NMR (101 MHz, i -DMSO) d 138.9, 136.7, 134.5, 129.7, 129.0, 128.6, 123.3, 123.1, 112.5, 65.4, 60.2, 52.1, 50.2, 15.4.
Example 3.7 Synthesis ofIBN Orthoformate Polymer 2, IBN-OP2
Figure imgf000033_0001
IBN Orthoformate Polymer 2 (IBN-OP2) was prepared by the general procedure from orthoformate linker 3 (65 mg, 0.15 mmol) and a, a’ - d i b ro m o
Figure imgf000033_0002
- x y 1 y 1 c n c (40 mg, 0.15 mmol) and isolated as an off-white foam (65 mg, 62%). 1H NMR (400 MHz, i -DMSO) d 9.54 (br s, 2H, ImH), 7.85 (br s, 4H, ImH), 7.50-7.40 (m, 12H, 3 x p-PhH), 5.45 (br s, 9H, C//(OEt) + 4 x NCH2), 4.64-4.55 (m, 4H, 2 x OCH2), 3.58 (q, 2H, J = 7.0 Hz, OC//2CH3), 1.12 (t, 3H, J = 7.0 Hz, OCH2CH3 ); 13C NMR (101 MHz, d6- DMSO) d 139.0, 136.8, 135.9, 134.4, 129.5, 129.0, 128.6, 123.4, 123.3, 112.5, 65.4, 60.2, 52.2, 52.0, 15.4.
Example 3.8 Synthesis ofIBN Orthoformate Polymer 3, IBN-OP3
Figure imgf000033_0003
IBN Orthoformate Polymer 3, IBN-OP3 was prepared by the general procedure from orthoformate linker 3 (99 mg, 0.23 mmol) and a, a’ - d i b ro m o -o-xylylcnc (61 mg, 0.23 mmol) and isolated as white flakes (149 mg, 93%). 1H NMR (400 MHz, <76-DMSO) d 9.50-9.18 (m, 2H, ImH), 7.86-7.74 (m, 4H, ImH), 7.50-7.29 (m, 12H, 2 x p-PhH + o-PhH), 5.68-5.60 (m, 4H, 2 x NCH2), 5.47-5.41 (m, 5H, C//(OEt) + 2 x NCH2), 4.64-4.56 (m, 4H, 2 x OCH2), 3.61-3.54 (m, 2H, OCH2CU3), 1.14-1.10 (m, 3H, OCU2CH3 ); 13C NMR (101 MHz, d6- DMSO) d 138.5, 136.7, 134.0, 133.0, 129.7, 129.6, 128.5, 128.1, 123.2, 122.8, 112.0, 64.9, 59.7, 51.8, 49.2, 15.0. Example 3.9 Synthesis ofIBN Orthoformate Polymer 4, IBN-OP4
Figure imgf000034_0001
IBN Orthoformate Polymer 4, IBN-OP4 was prepared by the general procedure from orthoformate linker 4 (70 mg, 0.16 mmol) and irans- 1 ,4-dibromobutcnc (35 mg, 0.16 mmol) and isolated by precipitation with THF as an off-white foam (65 mg, 62%). 1H NMR (400 MHz, d6- DMSO) d 9.47-9.25 (m, 2H, ImH), 7.89-7.81 (m, 4H, ImH), 7.48-7.40 (m, 6H, o- PhH), 7.21-7.19 (m, 2H, o-PhH), 6.11-6.04 (m, 2H, 2 x CH), 5.62-5.59 (m, 5H, C//(OEt) + 2 x NCH2), 4.96 (br s, 4H, 2 x CHCH2 ), 4.79 (br s, 4H, 2 x OCH2), 3.63-3.54 (m, 2H, OCH2CH3), 1.14-1.11 (m, 3H, OCH2CH3 ); 13C NMR (101 MHz, d6- DMSO) d 136.8, 135.7, 133.4, 129.8, 129.4, 128.8, 128.5, 123.1, 122.8, 112.1, 63.8, 59.9, 49.7, 49.2, 15.0.
Example 3.10 Synthesis ofIBN Orthoformate Polymer 5, IBN-OP5
Figure imgf000034_0002
IBN Orthoformate Polymer 5, IBN-OP5 was prepared by the general procedure from orthoformate linker 4 (70 mg, 0.16 mmol) and a, a’ - d i b ro m o - o - x y 1 y 1 c n c (43 mg, 0.16 mmol) and isolated by precipitation with THF as a white foam (52 mg, 46%). 1H NMR (400 MHz, de-DMSO) d 9.53-9.27 (m, 2H, ImH), 7.90-7.82 (m, 4H, ImH), 7.49-7.40 (m, 8H, o-PhH), 7.30-7.26 (m, 2H, o-PhH), 7.20-7.18 (m, 2H, o-PhH), 5.74-5.53 (m, 9H, C//(OEt) + 4 x NCH2), 4.79 (br s, 4H, 2 x OCH2), 3.58-3.54 (m, 2H, OC//2CH3), 1.13-1.08 (m, 3H, OCH2CH3 ); 13C NMR (101 MHz, d6- DMSO) d 137.2, 135.7, 133.4, 133.0, 129.8, 129.6, 129.2, 128.9, 128.8, 128.4, 123.4, 123.1, 112.1, 63.8, 60.0, 49.3, 49.2, 15.0.
Example 4 - Calculating Polymer Length by 1H NMR Spectroscopy
IBN-AP and IBN-OP polymers were found to have imidazole end groups based on analysis of the 1H NMR spectrum of purified polymers. Average polymer length, in terms of number of imidazole and imidazolium units per chain, was calculated based on the ratio of imidazolium (d 9.5-9.4 ppm) to imidazole (d 6.9 or 7.2 ppm) integral values, as illustrated in Figure 4.
Average polymer chain length = 2 imidazoii"m + 2
hmidazole
? 2.00
^ 0.33 + 2 14 imidazole and imidazolium units
Evaluation of antimicrobial properties
The antimicrobial activities of novel imidazolium polymers were evaluated against four different and clinically relevant microbes: S. aureus, E. coli, P. aeruginosa, and C. albicans.
Example 5 - Determining Minimum Inhibitory Concentration
Staphylococcus aureus (ATCC 6538, Gram-positive), Escherichia coli (ATCC 8739, Gram negative), Pseudomonas aeruginosa (Gram-negative), and Candida albicans (ATCC 10231, fungus) were used as representative microorganisms to challenge the antimicrobial functions of the imidazolium salts. All bacteria and fungus were stored frozen at -80 °C, and were grown overnight at 37°C in Mueller Hinton Broth (MHB) prior to experiments. Fungus was grown overnight at 22°C in Yeast Mold (YM) broth. Subsamples of these cultures were grown for a further 3 h and diluted to give an optical density value of 0.07 at 600 nm, corresponding to 3 xlO8 CFU mL 1 for bacteria and 106 CFU mL 1 for fungus (McFarland’s Standard 1; confirmed by plate counts).
The polymers were dissolved in MHB or YM broth at a concentration of 4 mg mL 1 and the minimal inhibitory concentrations (MICs) were determined by microdilution assay. Bacterial solutions (100 pL, 3 x 105 CFU mL 1) were mixed with 100 pL of oligomer solutions (ranging from 4 mg mL 1 to 2 pg mL 1 in serial two-fold dilutions) in each well of the 96-well plate. The plates were incubated at 37 °C for 24 h with constant shaking speed at 300 rpm. Bacterial growth was determined by measuring the optical density of the culture solution at a wavelength of 600 nm, using a microplate reader. The MIC measurement against Candida albicans is similar to bacteria except that the fungus solution is 106 CFU mL 1 in YM and the plates were incubated at room temperature. The minimum inhibitory concentrations were taken as the concentration of the antimicrobial agent at which no microbial growth was observed with the microplate reader. PBS solution containing microbial cells alone were used as negative controls. The assay was performed in four replicates and the experiments were repeated at least two times.
The minimum inhibitory concentration (MIC) values of the polymers are presented in Table 1. The MIC values of the polymers were also compared against a non-degradable imidazolium polymer PIM-45, the structure of which is depicted below:
Figure imgf000036_0001
Table 1. Minimum inhibitory concentrations (MIC) of the acid- sensitive degradable polymers.
MIC (pg/ml) HCio
Entry Compound _
S. aureus E. coli P. aeruginosa C. albicans (pg/ml)
1 IBN-AP1 31 16 31 62 >2000
2 IBN-AP2 4 4 250 62 >2000
3 IBN-AP3 16 16 125 62 1000
4 IBN-AP4 4 4 31 62 >2000
5 IBN-AP5 31 16 31 62 >2000
6 IBN-OP1 8 16 31 16 >2000
7 IBN-OP2 4 8 31 31 >2000
8 IBN-OP3 2 2 16 31 >2000
9 IBN-OP4 4 4 31 4 >2000
10 IBN-OP5 4 8 62 16 >2000
11 PIM-45 8 8 31 31 >2000
12 Vancomycin 2 >2000
All ten polymers demonstrated high antimicrobial activity when tested against the four microbes. Among the acetal-linked polymer series, IBN-AP2 exhibited the best performance. IBN-AP2 had lower MIC values against E. coli and S. aureus, but higher MIC values against P. aeruginosa and C. albicans compared with non-degradable imidazolium polymer PIM-45. Among the orthoformate-linked polymer series, IBN-OP2, 3 and 4 were identified as the most active polymers. All three polymers had MIC values against E. coli, S. aureus and P. aeruginosa and C. albicans lower than or comparable to that of non-degradable imidazolium polymer PIM-45.
Example 6 - Determining Antimicrobial Efficiency of Polymers
Time kill studies of 4 effective imidazolium polymers, IBN-AP2, IBN-AP4, IBN-OP3 and IBN-OP4 were carried out against E. coli.
The microbes were treated with polymers at MIC concentration, and samples were taken out of each well at different intervals. 100 pl of cell suspension was removed, rescued by a series of 10- fold dilutions with growth medium. For plating, 100 mΐ of the diluted samples was spread on growth medium agar plates and colonies were counted after overnight incubation at 37 °C.
All the polymers displayed bactericidal properties even at low concentration of 4 pg/ml (Figure 1). IBN-AP4 and IBN-OP3 showed higher efficiency than the other 2 polymers. For IBN-OP3, more than 99% reduction in cell population was observed within 10 minutes at 8 pg/ml. A 99.9% reduction in cell population can be obtained for IBN-AP4 and IBN-OP3 in 3 h.
Example 7 - Determining Toxicity of Polymers
The toxicities of these compounds were also evaluated by measuring the extent of hemolysis induced by the polymers.
Fresh rat red blood cells (RBCs) were diluted with PBS buffer to give an RBC stock suspension (4 vol% blood cells). A 100 pL aliquot of RBC suspension was added into a 96- well plate containing 100 pL polymer solutions of various concentrations (ranging from 4 mg mL-l, to 2 pg mL-l in serial two-fold dilutions in PBS). After 1 h incubation at 37°C, the contents of each well were pipetted into a micro -centrifuge tube and centrifuged at 2000 rpm for 5 min. Aliquots (100 mΐ) of the supernatant were transferred to a new 96-well plate. Hemolytic activity was determined as a function of hemoglobin release by measuring the optical density at 576 nm (OD576) of 100 pL of the supernatant using a microplate reader (TECAN). A control solution that contained only PBS was used as a reference for 0% hemolysis. Absorbance of red blood cells lysed with 0.5% Triton-X was taken as 100% hemolysis. The % hemolysis was calculated as below:
OD 576 (polymer)-OD 576 (PBS)
% Hemolysis A' 100
OD576 (Triton— X)—OD576 (PBS)
The data were expressed as mean and standard deviation of four replicates, and the tests were repeated two times. Data are expressed as means ± standard deviation of the mean (S.D. is indicated by error bars). Student’s /-test was used to determine significance among groups. A difference with P<0.05 was considered statistically significant.
All polymers, with the exception of IBN-AP3, demonstrated low toxicity with less than 10% hemolysis even at 2000 pg/ml, the highest concentration that was tested.
Example 8 - Degradation of imidazolium polymers
Sorenson’s phosphate buffer (pH, 6.0, 7.0, 8.0) was prepared in deionized water at concentrations of 100 mM. Stock solutions of the buffers were divided into 1 mL portions which were freeze-dried and dissolved in 1 mL of D20. A 4 mg sample of imidazolium polymer was dissolved in deuterated buffer solution with care taken to ensure complete solution of the compounds. The solution was stored at 25 °C in NMR tubes and 1H NMR spectra were obtained at specific time points. It was found that 128 scans were sufficient to obtain good signal-to-noise ratio.
Degradation of the acetal polymers (IBN-AP) was observed by disappearance of the signal of the dimethyl acetal protons (504). An overlay of 1H NMR spectra of IBN-AP4 taken in D20, PBS pH 6 over 4 days is shown in Figure 5 as a representative example. The 1H NMR spectra of an independently synthesized sample of F-diol4 is included for comparison.
Degradation of the orthoformate polymers (IBN-OP) was observed by disappearance of the signal of the C¾ protons of the OEt group (604), and appearance of the signal of the terminal protons of ethyl formate (606) and ethanol (605). An overlay of 1H NMR spectra of IBN- OP3 taken in D20, PBS pH 6 over 48 hours is shown in Figure 6 as a representative example. The 1H NMR spectra of an independently synthesized sample of F-diol3 is included for comparison .
Both the acetal and orthoformate-linked polymer series are expected to degrade under acidic conditions to form di-imidazolium fragments and small molecules. The degradation pathways for acetal polymer IBN-AP1 and orthoformate polymer IBN-OP1 are illustrated in Scheme 4a and 4b respectively.
Figure imgf000039_0001
Scheme 2. Degradation pathway for (a) acetal polymer IBN-AP1 and (b) orthoformate polymer IBN-OP1. (c) Degradation products for remaining imidazolium polymers.
Upon complete degradation, acetal-linked polymer IBN-AP1 forms di-imidazolium fragment F-dioll and an equivalent number of moles of acetone (Scheme 2a). The same di- imidazolium fragment F-dioll is expected from the degradation of orthoformate-linked polymer IBN-OP1, accompanied by an equivalent number of moles of ethyl formate which further decomposes to formic acid and ethanol (Scheme 2b). These pathways apply to the remaining polymers, IBN-AP2-5 and IBN-OP2-5, giving rise to the corresponding di- imidazolium fragments Fdiol2-5 (Scheme 2c).
The degradation products, Fdioll-5, were independently synthesized in order to evaluate their antimicrobial properties and toxicity (Table 2). The antimicrobial properties and toxicity of these degradation products was determined according to methods described in Example 5 and 7 above. F-diol2 was found to be inactive against all four strains of pathogenic microbes, while F-dioll, F-diol3 and F-diol4 only showed weak activity against S. aureus and no activity against the Gram-negative bacteria E. coli and P. aeruginosa and fungus C. albicans. F-diol5 was found to have weak activity against S. aureus and E. coli, and showed no inhibitory effect on P. aeruginosa and C. albicans. All the di-imidazolium fragments demonstrated low toxicity with less than 10% hemolysis even at 2000 pg/ml, the highest concentration that was tested. Table 2. Minimum inhibitory concentrations (MIC) of the imidazolium fragments
MIC (pg/ml) HCio
Entry Compound _
S. aureus E. coli P. aeruginosa C. albicans (pg/ml) F-dioll 125 >2000 2000 >2000 >2000
2 F-diol2 2000 >2000 >2000 >2000 >2000
3 F-diol3 500 >2000 >2000 >2000 >2000
4 F-diol4 250 1000 >2000 >2000 >2000
5 F-diol5 125 250 >2000 >2000 >2000
The degradation profiles of the most active polymers were investigated under pH 6, 7, and 8 conditions using NMR analysis. All five polymers (IBN-AP2, AP4, OP2, OP3 and OP4) were found to be degradable under these conditions, with degradation occurring most rapidly at pH 6 and slowly at pH 8 (Figure 2). Analysis of the 'H NMR spectra of fully degraded polymer samples confirmed the formation of di-imidazolium fragments, F-diol2, F-diol 3 and F-diol4, along with acetone or ethyl formate.
Polymers IBN-AP2, IBN-OP2 and IBN-OP3 with -xylylcnc spacers adjacent to the degradable linker were found to degrade on a shorter timescale compared to polymers IBN- AP4 and IBN-OP4 with linkers flanked by o-xylylene spacers. At pH 6, acetal polymer IBN- AP2 had a half-life of less than 6 hours (Figure 2a), while the half-life of IBN-AP4 is approximately 30 hours (Figure 2b). This trend was mirrored in the orthoformate polymer series: IBN-OP2 and OP3 both contain p-xylylene spacers adjacent to the orthoformate group and both have half-lives of 9 hours under acidic conditions (Figures 2c and 2d). IBN- OP4, on the other hand, was determined to have a half-life of 24 hours under the same conditions (Figure 2e).
All the polymers displayed greater stability under pH 8 buffered conditions, but ultimately degrade to the inactive di-imidazolium fragments. Under alkaline conditions, the influence of the spacer was less pronounced with IBN-AP2, AP4, OP2 and OP3 registering half-lives of 11 to 15 days (Figures 2a-d). After 30 days, only 10-20% of the acetal or orthoformate linkers remained intact. In contrast, IBN-OP4 was found to have a half-life of 24 days under identical conditions, and was more than 90% degraded after 90 days (Figure 2e). Over the course of degradation, conversion of the active polymers to inactive degradation products was expected to be reflected in changes to the MIC values. To determine if this was indeed the case, IBN-AP4 and IBN-OP3 were dissolved in buffer solution and their MIC values against E. coli and S. aureus were monitored at different time points. The relative activity of the polymer sample at a given point in time was expressed as a fraction of its MIC on day 0 over its MIC at the point of measurement (Figure 3).
In Sorenson’s phosphate buffer (pH 6), the degradation of IBN-AP4 and IBN-OP3 was very fast. The activity of IBN-AP4 against E. coli and S aureus dropped to quarter after 5 h and almost lost activity at day 4 (MIC > 250 pg/ml; Figure 3a and 3b). When IBN-OP3 was subjected to similar conditions, the activity of the degraded sample was less than 10% of the original polymer after day 1 (Figure 3c and 3d). Both polymers showed higher stability under pH 7 and 8 conditions, retaining half of their original activity in the first 2 days. By day 18, IBN-OP3 lost activity faster than IBN-AP4, implying that IBN-AP4 is more stable under neutral and basic conditions. Samples stored in rain water (pH 6) showed similar degradation profiles to samples stored in pH 7 phosphate buffer. The activity of the degraded sample was halved after 5 h and then degrade slowly afterwards. On the whole, these MIC changes were in good agreement with the degradation profile of IBN-AP4 and IBN-OP3 in different pH buffer solutions (Figure 2).
Industrial Applicability
The imidazolium oligomers or polymers as defined above may be included in antimicrobial compositions. Such antimicrobial compositions may be used as therapeutic compositions or medicaments for the treatment of a broad range of microbial or fungal infections. Examples of microbial or fungal infections which may be treated include Escherichia coli, Pseudomonas aeruginosa and Candida albicans infections. Such compositions may be applied externally on affected areas as topical creams, ointments or gels.
In addition, the imidazolium oligomers or polymers may be included in antimicrobial compositions for non-therapeutic applications as well. The fast killing kinetics of the present imidazolium oligomers makes it particularly useful for general disinfecting purposes. As such, the oligomers and polymers as defined above may be added to sanitizers, sterilizing solutions, decontaminants, disinfectants, and household cleaners. The oligomers may also be added to impart an antimicrobial property to fabrics and materials and may be used for the manufacture of sterile consumables such as gloves.

Claims

Claims
1. A polymer having the following Formula (I):
Figure imgf000043_0001
Formula (I)
wherein
Li has the following structure:
Ri R
j>/
— A·)— — A2
wherein Ri and R2 are, in each instance, same or different, and are independently selected from the group consisting of hydrogen, optionally substituted alkyl, and optionally substituted alkoxy;
Ai and A2, are in each instance, same or different, and are optionally substituted aryl; L2 is, in each instance, selected from the group consisting of optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, and optionally substituted aryl;
X, in each instance, is same or different, and is a halogen;
n is an integer of at least 1 ;
or a salt or hydrate thereof.
2. The polymer according to claim 1, wherein at least one of Ri and R2 is selected from Ci-C8 alkoxy group.
3. The polymer according to claim 2, wherein Ri and R2 are same or different, and are independently selected from hydrogen and ethoxy.
4. The polymer according to claim 1, wherein Ri and R2 are, in each instance, same or different, and are independently selected from Ci-C8 alkyl.
5. The polymer according to claim 4, wherein Ri and R2 are methyl.
6. The polymer according to any one of the preceding claims, wherein Ai and A2, are same or different, and are an aryl group derived from alkylbenzene.
7. The polymer according to any one of the preceding claims, wherein Ai and A2, are same or different, and are xylylene.
8. The polymer according to claim 7, wherein said xylylene is ortho-xylylene or para- xylylene.
9. The polymer according to any one of the preceding claims, wherein Ri, R2, Ai, and A2 are provided in one of the following combinations:
Ri and R2 are methyl; and Ai and A2 are para- xylylene;
Ri and R2 are methyl, and Ai and A2 are ortho-xylylene;
Ri is H, R2 is ethoxy; and Ai and A2 are para-xylylene; and
Ri is H, R2 is ethoxy; and Ai and A2 are ortho-xylylene.
10. The polymer according to any one of the preceding claims, wherein L2 is selected from the group consisting of alkenyl and aryl.
11. The polymer according to any one of the preceding claims, wherein X is selected from the group consisting of chlorine, fluorine, bromine and iodine.
12. The polymer according to any one of the preceding claims, wherein n is an integer from 1 to 100, 1 to 50, 1 to 30, 1 to 15, 3 tol5, or 7.
13. The polymer according to any one of the preceding claims, wherein the polymer is selected from the group consisting of:
Figure imgf000045_0001
14. A method for preparing a polymer according to any one of claims 1 to 13, comprising the step of:
contacting a di-imidazole having the following Formula (II):
Figure imgf000045_0002
Formula (II)
wherein Li has the following structure:
Figure imgf000045_0003
wherein Rl and R2 are, in each instance, same or different, and are independently selected from the group consisting of hydrogen, optionally substituted alkyl, and optionally substituted alkoxy; and Al and A2, are in each instance, same or different, and are optionally substituted aryl;
with a dihalide having the following Formula (III):
x— L2-X
Formula (III)
wherein L2 is, in each instance, selected from the group consisting of optionally substituted alkyl, optionally substituted alkenyl, optionally substituted alkynyl, and optionally substituted aryl; and X, in each instance, is same or different, and is a halogen.
15. An antimicrobial composition comprising a polymer according to any one of claims 1 to 13, or a salt or hydrate thereof.
16. A method for killing or inhibiting the growth of a microorganism, the method comprising contacting said microorganism ex vivo with an antimicrobial composition according to claim 15.
17. Non-therapeutic use of an antimicrobial composition according to claim 15, for killing or inhibiting the growth of a microorganism ex vivo.
18. An antimicrobial composition according to claim 15, for use as an antibiotic.
19. A method for treating a microbial infection, the method comprising administering to a subject an antimicrobial composition according to claim 15.
20. Use of an antimicrobial composition according to claim 15, in the manufacture of a medicament for treating a microbial infection.
21. The method according to claim 19, or use according to claim 20, wherein the microbial infection is caused by one or more microorganism.
22. The method according to claim 16, use according to claim 17, or the method or use according to claim 21, wherein the microorganism is a bacterium, fungus, or a mixture thereof.
PCT/SG2019/050478 2018-09-20 2019-09-20 Acid-sensitive degradable imidazolium polymers for antimicrobial applications WO2020060494A1 (en)

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