WO2019228527A1 - Lentiviral vector used for treatment of hemophilia a, lentivirus, and preparation method and application thereof - Google Patents
Lentiviral vector used for treatment of hemophilia a, lentivirus, and preparation method and application thereof Download PDFInfo
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Definitions
- the present application belongs to the field of genetic engineering technology and relates to a lentiviral vector pTYF used for the treatment of hemophilia A, a lentivirus, and a preparation method and application thereof, and particularly relates to use of a lentiviral vector improved for optimizing the expression of FVIII gene and/or FVIII-BDD gene in the preparation of a medicament and formulation for the treatment of hemophilia A.
- Hemophilia A is a hemorrhagic disease manifested with coagulopathy in the body which is caused by absence or insufficiency of FVIII protein due to mutations in X-linked clotting factor VIII (FVIII) gene.
- the disease is classified into three types according to the activity level of the factor in plasma: severe ( ⁇ 1%) , moderate (1%-5%) and mild (5%-50%) .
- Patients with this disease have disorders in producing active thromboplastin and a prolonged clotting time, and they have a tendency to bleed after insignificant trauma during the whole lifetime. Severe patients may have "spontaneous" bleeding even without a significant trauma. A severe condition may lead to death.
- the incidence of hemophilia is 15/100,000 to 20/100,000, wherein hemophilia A accounts for 85%and there is no difference between races and regions.
- FVIII functional FVIII proteins that are extracted from human blood or recombinant, purified FVIII proteins.
- the blood source of the protein may be contaminated by pathogens such as human immunodeficiency virus (HIV) and hepatitis virus.
- HIV human immunodeficiency virus
- hepatitis virus pathogens
- a small increase ( ⁇ 2%of the normal level) in clotting factor activity in the patient's plasma can significantly improve the condition, which makes gene therapy a potential cure for the disease and brings new hope to patients with hemophilia A.
- WO/2017/083764 discloses a method for the treatment of hemophilia A by using an adenovirus-associated virus (AAV) vector carrying FVIII-BDD (B domain deleted) gene. Since the B domain in FVIII gene has no obvious effect on the normal function of the protein, the deletion can significantly reduce the protein size and immunogenicity without affecting the procoagulant function of the protein. The method showed that the expression level of FVIII protein was better improved in mammalian cells. Therefore clinical therapeutic effects on hemophilia A may be better improved.
- AAV adenovirus-associated virus
- the present application provides a lentiviral vector used for the treatment of hemophilia A, a lentivirus, and a preparation method and application thereof.
- the lentiviral vector used for the treatment of hemophilia A has higher transduction efficiency, stability and safety.
- the application provides a lentiviral vector that is obtained by modifying a pTYF lentiviral vector at the 5'-end splice donor site, to be used for the treatment of hemophilia A, wherein the specific modifications are as follows:
- the lentiviral vector further comprises a FVIII gene and/or a FVIII-BDD gene.
- the application provides a lentiviral vector that can be obtained by modifying a pTYF lentiviral vector at the 5'-end splice donor site and the gag AUG codon, wherein the specific modifications are as follows:
- the lentiviral vector further comprises a FVIII gene and/or a FVIII-BDD gene.
- the FVIII gene is a codon optimized and humanized sequence.
- the FVIII-BDD gene is a humanized sequence.
- the 5'-end splice donor site is deleted or modified and the gag AUG may be deleted or modified so that the splice donor site of the lentiviral vector is not a potential site for homologous recombination between a packaging vector and the reference lentivirus packaging plasmids, that is, the lentiviral vector is unlikely to become pathogenic due to homologous recombination.
- This allow the HIV-derived virus genetic materials to lose its self-replication function, thereby greatly improving the safety of the lentiviral vector used in gene therapy.
- the modified lentiviral vector has higher transduction efficiency, high stability and improved safety, and it can express the delivered genes at higher efficiency during the gene therapy.
- the FVIII gene and/or the FVIII-BDD gene are/is specifically cloned into the modified lentiviral vector which is then transfected into cells to produce lentiviral vector, which can infect cells to achieve a successful and stable expression of the FVIII gene and/or the FVIII-BDD gene in the target cells including stem cells, achieving a gene therapy of hemophilia A with the lentiviral vector.
- nucleotide sequences used in the deletion or modification of the 5'-end splice donor site of the lentiviral vector are listed below, for example:
- the wild type 5' splice donor site GT is mutated to CA, wherein specific sequences are as follows:
- Wild type (SEQ ID NO. 4) : GGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
- Mutant (SEQ ID NO. 5) : GGCAAGAGGCGAGGGGCGGCGACTGCAGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA.
- the wild type 5' splice donor site GT is mutated to GG, wherein specific sequences are as follows:
- Wild type (SEQ ID NO. 6) : GGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
- Mutant (SEQ ID NO. 7) : GGCAAGAGGCGAGGGGCGGCGACTGGGGAGTAC GCCAAAAATTTTGACTAGCGGAGGCTA.
- the FVIII gene has the nucleotide sequence as shown in SEQ ID NO. 1, or a nucleotide sequence that shares at least 80%homology, preferably at least 85%homology, further preferably at least 95%homology therewith.
- the FVIII gene has a nucleotide sequence that shares at least 80%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
- the FVIII gene has a nucleotide sequence that shares at least 82%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
- the FVIII gene has a nucleotide sequence that shares at least 85%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
- the FVIII gene has a nucleotide sequence that shares at least 88%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
- the FVIII gene has a nucleotide sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
- the FVIII gene has a nucleotide sequence that shares at least 92%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
- the FVIII gene has a nucleotide sequence that shares at least 95%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
- the FVIII-BDD gene has the nucleotide sequence as shown in SEQ ID NO. 2, or a nucleotide sequence that shares at least 80%homology, preferably at least 85%homology, further preferably at least 95%homology therewith.
- the FVIII-BDD gene has a nucleotide sequence that shares at least 80%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
- the FVIII-BDD gene has a nucleotide sequence that shares at least 82%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
- the FVIII-BDD gene has a nucleotide sequence that shares at least 85%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
- the FVIII-BDD gene has a nucleotide sequence that shares at least 88%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
- the FVIII-BDD gene has a nucleotide sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
- the FVIII-BDD gene has a nucleotide sequence that shares at least 92%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
- the FVIII-BDD gene has a nucleotide sequence that shares at least 95%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
- the sequence that shares at least 80%homology with the nucleotide sequence as shown in SEQ ID NO. 1 or 2 is a modified FVIII gene or FVIII-BDD gene which still functions as a FVIII gene or a FVIII-BDD gene. It may be a shortened form of the FVIII protein or the FVIII-BDD protein or it may use only the functional domain sequence of the FVIII or FVIII-BDD. Loading any one of these modified nucleotide sequences into the lentiviral vector can achieve the function of the FVIII gene or the FVIII-BDD gene to repair the FVIII gene or the FVIII-BDD gene.
- the nucleotide sequence shown in SEQ ID NO. 1 is as follows:
- FVIII gene (SEQ ID NO. 1) :
- FVIII-BDD gene (SEQ ID NO. 2) :
- a promoter sequence is further comprised in front of the FVIII gene and/or the FVIII-BDD gene, wherein the promoter sequence is EF1 ⁇ and/or CMV, preferably EF1 ⁇ .
- any promoter can be used as long as it is capable of initiating FVIII and/or FVIII-BD gene expression.
- the inventor has found that use of the EF1 ⁇ promoter achieves more efficient gene delivery while ensuring safety.
- the EF1 ⁇ has the nucleotide sequence as shown in SEQ ID NO. 3, or a nucleotide sequence that shares at least 90%homology, preferably at least 95%homology therewith.
- the EF1 ⁇ has a nucleotide sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 3.
- the EF1 ⁇ has a nucleotide sequence that shares at least 92%homology with the nucleotide sequence as shown in SEQ ID NO. 3.
- the EF1 ⁇ has a nucleotide sequence that shares at least 95%homology with the nucleotide sequence as shown in SEQ ID NO. 3.
- the sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 3 is a modified EF1 ⁇ which still functions as a promoter. It may be a shortened form of the EF1 ⁇ . Loading any one of these modified nucleotide sequences into the lentiviral vector can achieve the function of the promoter to initiate the expression of FVIII gene and/or FVIII-BDD gene.
- the nucleotide sequence shown in SEQ ID NO. 3 is as follows:
- the present application provides a recombinant lentivirus that is obtained by co-transfecting a mammalian cell with the lentiviral vector pTYF according to the first aspect and packaging helper plasmids pNHP and pHEF-VSV-G.
- the mammalian cell is a HEK293T cell and/or a TE671 cell.
- the present application provides a method for preparing the lentivirus according to the second aspect, comprising the steps of:
- the insertion site in step (2) may be any restriction site that can be synthesized by genetic engineering, although restriction sites BamHI and SpeI are preferably used in the present application.
- the packaging helper plasmid in step (3) is pNHP and pHEF-VSV-G.
- the mammalian cell is a HEK293T cell and/or a TE671 cell.
- the co-transfected mammalian cell is cultured for 24-72 h, for example, 24 h, 25 h, 26 h, 27 h, 28 h, 29 h, 30 h, 31 h, 32 h, 33 h, 34 h, 35 h, 36 h, 37 h, 38 h, 39 h, 40 h, 41 h, 42 h, 43 h, 44 h, 45 h, 46 h, 47 h, 48 h, 50 h, 52 h, 55 h, 58 h, 60 h, 62 h, 65 h, 68 h, 70 h or 72 h.
- the present application provides a recombinant cell which comprises the lentiviral vector according to the first aspect and/or the recombinant lentivirus according to the second aspect.
- the recombinant cell is a recombinant stem cell and/or a progenitor cell, preferably a blood stem cell and/or a mesenchymal stem cell.
- the lentivirus-transfected stem cells are capable of stably expressing the FVIII gene and/or the FVIII-BD gene in a large amount.
- the recombinant lentivirus may be introduced into peripheral blood stem cells and mesenchymal stem cells to form a double stem cell treatment strategy, which can further improve the delivery efficiency and expression level of the FVIII gene and/or the FVIII-BD gene in bone marrow, thereby achieving a faster resolution of hemophilia A symptoms and a more comprehensive and long-term gene therapy.
- the present application provides a pharmaceutical composition which comprises any one selected from the group consisting of the lentiviral vector according to the first aspect, the recombinant lentivirus according to the second aspect, and the recombinant cell according to the forth aspect, or a combination of at least two selected therefrom.
- the composition further comprises a pharmaceutically acceptable adjuvant which is any one selected from the group consisting of a growth-stimulating factor, an excipient, a diluent, a carrier, a flavoring agent, a binder and a filler, or a combination of at least two selected therefrom.
- a pharmaceutically acceptable adjuvant which is any one selected from the group consisting of a growth-stimulating factor, an excipient, a diluent, a carrier, a flavoring agent, a binder and a filler, or a combination of at least two selected therefrom.
- the present application provides use of the lentiviral vector according to the first aspect, the recombinant lentivirus according to the second aspect, the recombinant cell according to the forth aspect, or the pharmaceutical composition according to the fifth aspect in the preparation of a medicament and/or an agent for the treatment of hemophilia A.
- peripheral blood of a patient is collected and stem cells are isolated therefrom which are then transduced with the lentiviral vector, followed by i. v. retransfusion into the patient for the treatment of hemophilia A disease.
- the lentiviral vector can be injected directly into the lesion cell site for the treatment of hemophilia A disease.
- the lentiviral vector is specifically modified so that the HIV virus lose its self-replication function, thereby greatly improving the safety performance of the lentiviral vector itself used in gene therapy.
- the modified lentiviral vector has higher transduction efficiency, stability and safety, and it can more efficiently complete the delivery of normal genes during the gene therapy;
- a human codon optimized FVIII gene and/or a FVIII-BD gene are/is specifically connected into the modified lentiviral vector of the present invention under the EF1 ⁇ promoter, thereby achieving a more efficient gene delivery while ensuring safety, significantly increasing the expression level of the FVIII gene and/or the FVIII-BD gene in cells, and more efficiently accomplishing the transfer of normal genes during the gene therapy of hemophilia A;
- the lentiviral vector can directly correct the functionally defect FVIII gene and/or FVIII-BD gene in cells, and can effectively improve the delivery efficiency and expression level of the FVIII gene and/or the FVIII-BD gene in bone marrow cells, which has great significance in ensuring the effectiveness of gene therapy and lays foundation for a faster resolution of hemophilia A symptoms and a more comprehensive and long-term gene therapy.
- Figure 1 is a schematic diagram showing the modification of the lentiviral vector pTYF
- Figure 2 is a schematic diagram showing the structure of the lentiviral vector, wherein F8 is the FVIII gene and/or the FVIII-BDD gene;
- Figure 3 is a schematic diagram showing the purification process of the lentiviral vector
- Figure 4 is a schematic diagram showing the therapeutic process for treating hemophilia A diseases by a double stem cell system which is obtained by transduction with a lentiviral vector carrying a functional FVIII and/or FVIII-BD;
- Figure 5 is a schematic diagram showing the protein expression in K562 cells transduced with lentiviral vectors carrying FVIII-BDD.
- This example provides a method for constructing a lentiviral vector, which specifically includes the following steps:
- Wild type (SEQ ID NO. 4) : GGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
- Mutant (SEQ ID NO. 5) : GGCAAGAGGCGAGGGGCGGCGACTGCAGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
- the sequences of the normal FVIII and/or FVIII-BD gene (s) (as shown in SEQ ID NO. 1-2) and the human EF1 ⁇ promoter (as shown in SEQ ID NO. 3) were synthesized by whole gene synthesis, which were then connected into the lentiviral vector TYF via restriction sites.
- the obtained product was identified by sequencing and digestion with double enzymes (the NEB original recommendation was referred to for the best reaction condition; BamHI clone site (ggatccacc) -AUG was used for 5’ and SpeI clone site (actagt) was used for 3’ ) to obtain a correctly linked lentiviral vector which carried the normal FVIII and/or FVIII-BD gene (s) inserted under the hEF1 ⁇ promoter.
- the specific link position and the structure of the lentiviral vector are shown in Figure 2.
- nucleotide sequences shown in SEQ ID NO. 1-2 are as follows:
- FVIII gene (SEQ ID NO. 1) :
- FVIII-BDD gene (SEQ ID NO. 2) :
- nucleotide sequence shown in SEQ ID NO. 3 is as follows:
- the lentiviral vector prepared in Example 1 was further packaged, purified and concentrated to obtain a lentivirus.
- the specific process is shown in FIG. 3, and the specific steps are as follows:
- Example 1 The lentiviral vector constructed in Example 1 and packaging helper plasmids pNHP and pHEF-VSV-G were co-transfected into mammalian cell HEK293T, and cultured for 24-72h;
- the collected lentivirus carrying normal FVIII and/or FVIII-BDD gene (s) were used to transduce FT902 mesenchymal stem cells which were then identified for protein expression to confirm the expression of the FVIII and/or FVIII-BDD gene (s) in cells.
- FIG. 4 The schematic diagram of the therapeutic process for treating hemophilia A disease with a single or double stem cell system which was obtained by transduction with the lentiviral vector of the present application prepared in Example 2 carrying normal FVIII and/or FVIII-BDD gene (s) is shown in FIG 4.
- Stem cells of a patient were mobilized, and then peripheral blood of the patient was collected and hematopoietic stem cells and mesenchymal stem cells were isolated therefrom.
- the stem cells were transduced with the lentiviral vector carrying normal FVIII and/or FVIII-BDD gene (s) to obtain stem cells carrying normal FVIII and/or FVIII-BDD gene (s) , followed by i. v. retransfusion of these cells into the patient for the treatment of disease.
- K562 cells were transduced with lentiviral vectors carrying FVIII-BDD of the present application as prepared in Example 2, and then cell lysis proteins (L) and proteins secreted in supernatant (S) were collected which were then used for Western Blot. Stained with anti-F8 antibody and the results were shown in Figure 5. A large amount of intracellular and extracellular F8BDD proteins were expressed in cells transduced with lentiviral FVIII-BDD gene. Proteins stained by anti-GAPDH antibody were used as extracellular control proteins.
- the lentiviral vector can directly repair the defective FVIII and/or FVIII-BD gene (s) in cells, and can effectively improve the delivery efficiency and expression level of the FVIII and/or FVIII-BD gene (s) in bone marrow, which has great significance in ensuring the effectiveness of gene therapy and lays foundation for a faster resolution of hemophilia A symptoms and a more comprehensive and long-term gene therapy.
Abstract
The present application provides a lentiviral vector used for the treatment of hemophilia A, lentivirus, and preparation method and application thereof, wherein the lentiviral vector may be obtained by applying pTYF or modifying a pTYF lentiviral vector at the 5'-end splice donor site and it further comprises a FVIII gene and/or a FVIII-BDD gene. The FVIII gene and/or the FVIII-BDD gene are/is specifically connected into the pTYF or the modified lentiviral vector of the present invention, thereby achieving a more efficient gene delivery while ensuring safety, significantly increasing the expression level of the FVIII gene and/or the FVIII-BDD gene in bone marrow-related cells, and more efficiently accomplishing the transfer of normal genes during the gene therapy of hemophilia A.
Description
The present application belongs to the field of genetic engineering technology and relates to a lentiviral vector pTYF used for the treatment of hemophilia A, a lentivirus, and a preparation method and application thereof, and particularly relates to use of a lentiviral vector improved for optimizing the expression of FVIII gene and/or FVIII-BDD gene in the preparation of a medicament and formulation for the treatment of hemophilia A.
Hemophilia A is a hemorrhagic disease manifested with coagulopathy in the body which is caused by absence or insufficiency of FVIII protein due to mutations in X-linked clotting factor VIII (FVIII) gene. The disease is classified into three types according to the activity level of the factor in plasma: severe (<1%) , moderate (1%-5%) and mild (5%-50%) . Patients with this disease have disorders in producing active thromboplastin and a prolonged clotting time, and they have a tendency to bleed after insignificant trauma during the whole lifetime. Severe patients may have "spontaneous" bleeding even without a significant trauma. A severe condition may lead to death. The incidence of hemophilia is 15/100,000 to 20/100,000, wherein hemophilia A accounts for 85%and there is no difference between races and regions.
At present, replacement therapy is performed based on the supplementary of functional FVIII proteins that are extracted from human blood or recombinant, purified FVIII proteins. However, the blood source of the protein may be contaminated by pathogens such as human immunodeficiency virus (HIV) and hepatitis virus. Although the risk of infection with infectious diseases has been greatly reduced as the genetic engineering method being applied to the synthesis and purification of the factor, patients still need continuous, very expensive replacement therapy for their whole life, which will result in low quality of life. In fact, a small increase (≥ 2%of the normal level) in clotting factor activity in the patient's plasma can significantly improve the condition, which makes gene therapy a potential cure for the disease and brings new hope to patients with hemophilia A.
Prior to the present application, some studies related to FVIII gene therapy has been performed. Among them, a study reported a lentiviral vector carrying a gene encoding normal FVIII protein can be used to transfect bone marrow cells, which were then transplanted into a FVIII-knockout mouse model for treatment. Results in this report showed that a certain amount of FVIII expression in vitro was observed, but the expression level of FVIII in vivo was low and no significant therapeutic effect was shown. Therefore, how to more efficiently achieve the transfer and expression of FVIII gene in vivo is the key to achieve an effective gene therapy for hemophilia A.
After that, WO/2017/083764 discloses a method for the treatment of hemophilia A by using an adenovirus-associated virus (AAV) vector carrying FVIII-BDD (B domain deleted) gene. Since the B domain in FVIII gene has no obvious effect on the normal function of the protein, the deletion can significantly reduce the protein size and immunogenicity without affecting the procoagulant function of the protein. The method showed that the expression level of FVIII protein was better improved in mammalian cells. Therefore clinical therapeutic effects on hemophilia A may be better improved.
SUMMARY OF THE INVENTION
In view of the deficiencies in the prior art, the present application provides a lentiviral vector used for the treatment of hemophilia A, a lentivirus, and a preparation method and application thereof. The lentiviral vector used for the treatment of hemophilia A has higher transduction efficiency, stability and safety.
To achieve this purpose, the present application uses the following technical solutions:
In a first aspect, the application provides a lentiviral vector that is obtained by modifying a pTYF lentiviral vector at the 5'-end splice donor site, to be used for the treatment of hemophilia A, wherein the specific modifications are as follows:
(a) the 5'-end splice donor site thereof is deleted or modified so that the splice donor site of the modified lentiviral vector is not a potential site for homologous recombination between a packaging vector and the reference lentivirus pTYF;
(b) it still has the function of the packaging signal of a virus;
wherein, the lentiviral vector further comprises a FVIII gene and/or a FVIII-BDD gene.
In an embodiment of the present application, the application provides a lentiviral vector that can be obtained by modifying a pTYF lentiviral vector at the 5'-end splice donor site and the gag AUG codon, wherein the specific modifications are as follows:
(a) the 5'-end splice donor site thereof is deleted or modified so that the splice donor site of the modified lentiviral vector is not a potential site for homologous recombination;
(b) the 5'-end gag AUG codon thereof is modified so that the modified lentiviral vector does not contain a functional gag AUG codon;
wherein, the lentiviral vector further comprises a FVIII gene and/or a FVIII-BDD gene.
Materials and procedures used for the modification can be found, for example, in references 1-6.
In an embodiment of the present application, the FVIII gene is a codon optimized and humanized sequence.
In an embodiment of the present application, the FVIII-BDD gene is a humanized sequence.
In the present application, the 5'-end splice donor site is deleted or modified and the gag AUG may be deleted or modified so that the splice donor site of the lentiviral vector is not a potential site for homologous recombination between a packaging vector and the reference lentivirus packaging plasmids, that is, the lentiviral vector is unlikely to become pathogenic due to homologous recombination. This allow the HIV-derived virus genetic materials to lose its self-replication function, thereby greatly improving the safety of the lentiviral vector used in gene therapy. This is a safety improvement that none of the other lentiviral vectors have, and in addition, this is the first application using pTYF derived vector expressing FVIII and/or FVIII-BDD. The modified lentiviral vector has higher transduction efficiency, high stability and improved safety, and it can express the delivered genes at higher efficiency during the gene therapy. The FVIII gene and/or the FVIII-BDD gene are/is specifically cloned into the modified lentiviral vector which is then transfected into cells to produce lentiviral vector, which can infect cells to achieve a successful and stable expression of the FVIII gene and/or the FVIII-BDD gene in the target cells including stem cells, achieving a gene therapy of hemophilia A with the lentiviral vector.
According to the present application, nucleotide sequences used in the deletion or modification of the 5'-end splice donor site of the lentiviral vector are listed below, for example:
In a specific embodiment, the wild type 5' splice donor site GT is mutated to CA, wherein specific sequences are as follows:
Wild type (SEQ ID NO. 4) : GGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
Mutant (SEQ ID NO. 5) : GGCAAGAGGCGAGGGGCGGCGACTGCAGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA.
In a specific embodiment, the wild type 5' splice donor site GT is mutated to GG, wherein specific sequences are as follows:
Wild type (SEQ ID NO. 6) : GGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
Mutant (SEQ ID NO. 7) : GGCAAGAGGCGAGGGGCGGCGACTGGGGAGTAC GCCAAAAATTTTGACTAGCGGAGGCTA.
According to the present application, the FVIII gene has the nucleotide sequence as shown in SEQ ID NO. 1, or a nucleotide sequence that shares at least 80%homology, preferably at least 85%homology, further preferably at least 95%homology therewith.
In some embodiments, the FVIII gene has a nucleotide sequence that shares at least 80%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
In some embodiments, the FVIII gene has a nucleotide sequence that shares at least 82%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
In some embodiments, the FVIII gene has a nucleotide sequence that shares at least 85%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
In some embodiments, the FVIII gene has a nucleotide sequence that shares at least 88%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
In some embodiments, the FVIII gene has a nucleotide sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
In some embodiments, the FVIII gene has a nucleotide sequence that shares at least 92%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
In some embodiments, the FVIII gene has a nucleotide sequence that shares at least 95%homology with the nucleotide sequence as shown in SEQ ID NO. 1.
According to the present application, the FVIII-BDD gene has the nucleotide sequence as shown in SEQ ID NO. 2, or a nucleotide sequence that shares at least 80%homology, preferably at least 85%homology, further preferably at least 95%homology therewith.
In some embodiments, the FVIII-BDD gene has a nucleotide sequence that shares at least 80%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
In some embodiments, the FVIII-BDD gene has a nucleotide sequence that shares at least 82%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
In some embodiments, the FVIII-BDD gene has a nucleotide sequence that shares at least 85%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
In some embodiments, the FVIII-BDD gene has a nucleotide sequence that shares at least 88%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
In some embodiments, the FVIII-BDD gene has a nucleotide sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
In some embodiments, the FVIII-BDD gene has a nucleotide sequence that shares at least 92%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
In some embodiments, the FVIII-BDD gene has a nucleotide sequence that shares at least 95%homology with the nucleotide sequence as shown in SEQ ID NO. 2.
In the present application, the inventor has found that the sequence that shares at least 80%homology with the nucleotide sequence as shown in SEQ ID NO. 1 or 2 is a modified FVIII gene or FVIII-BDD gene which still functions as a FVIII gene or a FVIII-BDD gene. It may be a shortened form of the FVIII protein or the FVIII-BDD protein or it may use only the functional domain sequence of the FVIII or FVIII-BDD. Loading any one of these modified nucleotide sequences into the lentiviral vector can achieve the function of the FVIII gene or the FVIII-BDD gene to repair the FVIII gene or the FVIII-BDD gene. The nucleotide sequence shown in SEQ ID NO. 1 is as follows:
FVIII gene (SEQ ID NO. 1) :
FVIII-BDD gene (SEQ ID NO. 2) :
According to the present application, a promoter sequence is further comprised in front of the FVIII gene and/or the FVIII-BDD gene, wherein the promoter sequence is EF1α and/or CMV, preferably EF1α.
In the present application, any promoter can be used as long as it is capable of initiating FVIII and/or FVIII-BD gene expression. The inventor has found that use of the EF1α promoter achieves more efficient gene delivery while ensuring safety.
According to the present application, the EF1α has the nucleotide sequence as shown in SEQ ID NO. 3, or a nucleotide sequence that shares at least 90%homology, preferably at least 95%homology therewith.
In some embodiments, the EF1α has a nucleotide sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 3.
In some embodiments, the EF1α has a nucleotide sequence that shares at least 92%homology with the nucleotide sequence as shown in SEQ ID NO. 3.
In some embodiments, the EF1α has a nucleotide sequence that shares at least 95%homology with the nucleotide sequence as shown in SEQ ID NO. 3.
In the present application, the inventor has found that the sequence that shares at least 90%homology with the nucleotide sequence as shown in SEQ ID NO. 3 is a modified EF1α which still functions as a promoter. It may be a shortened form of the EF1α. Loading any one of these modified nucleotide sequences into the lentiviral vector can achieve the function of the promoter to initiate the expression of FVIII gene and/or FVIII-BDD gene. The nucleotide sequence shown in SEQ ID NO. 3 is as follows:
In a second aspect, the present application provides a recombinant lentivirus that is obtained by co-transfecting a mammalian cell with the lentiviral vector pTYF according to the first aspect and packaging helper plasmids pNHP and pHEF-VSV-G.
Materials and procedures used for the co-transfection can be found, for example, in references 1-6.
Preferably, the mammalian cell is a HEK293T cell and/or a TE671 cell.
In a third aspect, the present application provides a method for preparing the lentivirus according to the second aspect, comprising the steps of:
(1) modifying the lentiviral vector pTYF;
(2) synthesizing the sequences of a promoter and a FVIII gene and/or a FVIII-BDD gene by whole gene synthesis, and inserting the same into the point-mutated lentiviral vector of step (1) ;
(3) co-transfecting the constructed lentiviral vector and a packaging helper plasmid into a mammalian cell to obtain the recombinant lentivirus.
According to the present application, the insertion site in step (2) may be any restriction site that can be synthesized by genetic engineering, although restriction sites BamHI and SpeI are preferably used in the present application.
According to the present application, the packaging helper plasmid in step (3) is pNHP and pHEF-VSV-G.
According to the present application, the mammalian cell is a HEK293T cell and/or a TE671 cell.
According to the present application, the co-transfected mammalian cell is cultured for 24-72 h, for example, 24 h, 25 h, 26 h, 27 h, 28 h, 29 h, 30 h, 31 h, 32 h, 33 h, 34 h, 35 h, 36 h, 37 h, 38 h, 39 h, 40 h, 41 h, 42 h, 43 h, 44 h, 45 h, 46 h, 47 h, 48 h, 50 h, 52 h, 55 h, 58 h, 60 h, 62 h, 65 h, 68 h, 70 h or 72 h.
In a fourth aspect, the present application provides a recombinant cell which comprises the lentiviral vector according to the first aspect and/or the recombinant lentivirus according to the second aspect.
According to the present application, the recombinant cell is a recombinant stem cell and/or a progenitor cell, preferably a blood stem cell and/or a mesenchymal stem cell.
In the present application, the lentivirus-transfected stem cells are capable of stably expressing the FVIII gene and/or the FVIII-BD gene in a large amount. The recombinant lentivirus may be introduced into peripheral blood stem cells and mesenchymal stem cells to form a double stem cell treatment strategy, which can further improve the delivery efficiency and expression level of the FVIII gene and/or the FVIII-BD gene in bone marrow, thereby achieving a faster resolution of hemophilia A symptoms and a more comprehensive and long-term gene therapy.
In a fifth aspect, the present application provides a pharmaceutical composition which comprises any one selected from the group consisting of the lentiviral vector according to the first aspect, the recombinant lentivirus according to the second aspect, and the recombinant cell according to the forth aspect, or a combination of at least two selected therefrom.
According to the present application, the composition further comprises a pharmaceutically acceptable adjuvant which is any one selected from the group consisting of a growth-stimulating factor, an excipient, a diluent, a carrier, a flavoring agent, a binder and a filler, or a combination of at least two selected therefrom.
In a sixth aspect, the present application provides use of the lentiviral vector according to the first aspect, the recombinant lentivirus according to the second aspect, the recombinant cell according to the forth aspect, or the pharmaceutical composition according to the fifth aspect in the preparation of a medicament and/or an agent for the treatment of hemophilia A.
In a specific embodiment, peripheral blood of a patient is collected and stem cells are isolated therefrom which are then transduced with the lentiviral vector, followed by i. v. retransfusion into the patient for the treatment of hemophilia A disease.
In a specific embodiment, the lentiviral vector can be injected directly into the lesion cell site for the treatment of hemophilia A disease.
Compared with the prior art, the present application has the following beneficial effects:
(1) In the present application, the lentiviral vector is specifically modified so that the HIV virus lose its self-replication function, thereby greatly improving the safety performance of the lentiviral vector itself used in gene therapy. The modified lentiviral vector has higher transduction efficiency, stability and safety, and it can more efficiently complete the delivery of normal genes during the gene therapy;
(2) A human codon optimized FVIII gene and/or a FVIII-BD gene are/is specifically connected into the modified lentiviral vector of the present invention under the EF1α promoter, thereby achieving a more efficient gene delivery while ensuring safety, significantly increasing the expression level of the FVIII gene and/or the FVIII-BD gene in cells, and more efficiently accomplishing the transfer of normal genes during the gene therapy of hemophilia A;
(3) In the present application, the lentiviral vector can directly correct the functionally defect FVIII gene and/or FVIII-BD gene in cells, and can effectively improve the delivery efficiency and expression level of the FVIII gene and/or the FVIII-BD gene in bone marrow cells, which has great significance in ensuring the effectiveness of gene therapy and lays foundation for a faster resolution of hemophilia A symptoms and a more comprehensive and long-term gene therapy.
DESCRIPTION OF THE DRAWINGS
Figure 1 is a schematic diagram showing the modification of the lentiviral vector pTYF;
Figure 2 is a schematic diagram showing the structure of the lentiviral vector, wherein F8 is the FVIII gene and/or the FVIII-BDD gene;
Figure 3 is a schematic diagram showing the purification process of the lentiviral vector;
Figure 4 is a schematic diagram showing the therapeutic process for treating hemophilia A diseases by a double stem cell system which is obtained by transduction with a lentiviral vector carrying a functional FVIII and/or FVIII-BD;
Figure 5 is a schematic diagram showing the protein expression in K562 cells transduced with lentiviral vectors carrying FVIII-BDD.
In order to further illustrate the technical measures adopted by the present application and the effects thereof, the present application is further described below with reference to the embodiments and accompanying drawings. It can be understand that the specific embodiments described herein are merely illustrative of the present application and are not intended to limit the present application.
In the examples, techniques or conditions, which are not specifically indicated, are performed according to techniques or conditions described in the literature of the art, or according to product instructions. The reagents or instruments for use, which are not indicated with manufacturers, are conventional products that are commercially available from formal sources.
Example 1 Construction of a lentiviral vector
This example provides a method for constructing a lentiviral vector, which specifically includes the following steps:
(1) The schematic diagram of the modification of the lentiviral vector pTYF is shown in Figure 1. The specific mutations were mutation of the wild type 5' splice donor site GT to CA and deletion of the enhancer in U3. For specific modification methods, see "Contributions of Viral Splice Sites and cis-Regulatory Elements to Lentivirus Vector Function, YAN CUI, JOURNAL OF VIROLOGY, July 1999, p. 6171–6176" . Specific steps are as follows:
Modification of the 5' splice donor site:
Wild type (SEQ ID NO. 4) : GGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
Mutant (SEQ ID NO. 5) : GGCAAGAGGCGAGGGGCGGCGACTGCAGAGTACGCCAAAAATTTTGACTAGCGGAGGCTA;
(2) Insertion of a promoter and the human codon optimized FVIII gene and/or FVIII-BD gene:
The sequences of the normal FVIII and/or FVIII-BD gene (s) (as shown in SEQ ID NO. 1-2) and the human EF1α promoter (as shown in SEQ ID NO. 3) were synthesized by whole gene synthesis, which were then connected into the lentiviral vector TYF via restriction sites. The obtained product was identified by sequencing and digestion with double enzymes (the NEB original recommendation was referred to for the best reaction condition; BamHI clone site (ggatccacc) -AUG was used for 5’ and SpeI clone site (actagt) was used for 3’ ) to obtain a correctly linked lentiviral vector which carried the normal FVIII and/or FVIII-BD gene (s) inserted under the hEF1α promoter. The specific link position and the structure of the lentiviral vector are shown in Figure 2.
Specifically, the nucleotide sequences shown in SEQ ID NO. 1-2 are as follows:
FVIII gene (SEQ ID NO. 1) :
FVIII-BDD gene (SEQ ID NO. 2) :
Specifically, the nucleotide sequence shown in SEQ ID NO. 3 is as follows:
Example 2 Preparation and Identification of a Lentivirus
1) Preparation of a lentivirus
The lentiviral vector prepared in Example 1 was further packaged, purified and concentrated to obtain a lentivirus. The specific process is shown in FIG. 3, and the specific steps are as follows:
(1) The lentiviral vector constructed in Example 1 and packaging helper plasmids pNHP and pHEF-VSV-G were co-transfected into mammalian cell HEK293T, and cultured for 24-72h;
(2) The lentivirus obtained after the culture was purified and concentrated to obtain a lentivirus.
2) Identification of the lentivirus
The collected lentivirus carrying normal FVIII and/or FVIII-BDD gene (s) were used to transduce FT902 mesenchymal stem cells which were then identified for protein expression to confirm the expression of the FVIII and/or FVIII-BDD gene (s) in cells.
As can be seen from the results, there was no FVIII and/or FVIII-BDD protein expression in negative control cells which were cells without transduction of lentivirus, but a significantly larger amount of FVIII and/or FVIII-BDD protein expression was observed in cells transduced with the lentivirus carrying the normal FVIII and/or FVIII-BDD gene (s) .
This indicates that the present application can successfully allow a cell to express FVIII and/or FVIII-BDD protein (s) in a large amount by lentivirus, having a good therapeutic potential for diseases.
Example 3 Therapeutic effect of the lentivirus
The schematic diagram of the therapeutic process for treating hemophilia A disease with a single or double stem cell system which was obtained by transduction with the lentiviral vector of the present application prepared in Example 2 carrying normal FVIII and/or FVIII-BDD gene (s) is shown in FIG 4. Stem cells of a patient were mobilized, and then peripheral blood of the patient was collected and hematopoietic stem cells and mesenchymal stem cells were isolated therefrom. The stem cells were transduced with the lentiviral vector carrying normal FVIII and/or FVIII-BDD gene (s) to obtain stem cells carrying normal FVIII and/or FVIII-BDD gene (s) , followed by i. v. retransfusion of these cells into the patient for the treatment of disease.
It can be seen from the results that the delivery efficiency and expression level of the FVIII and/or FVIII-BDD gene (s) in bone marrow were effectively increased after direct injection of the lentivirus.
Example 4 Intracellular and extracellular expression efficiency after lentiviral F8BDD transduction
K562 cells were transduced with lentiviral vectors carrying FVIII-BDD of the present application as prepared in Example 2, and then cell lysis proteins (L) and proteins secreted in supernatant (S) were collected which were then used for Western Blot. Stained with anti-F8 antibody and the results were shown in Figure 5. A large amount of intracellular and extracellular F8BDD proteins were expressed in cells transduced with lentiviral FVIII-BDD gene. Proteins stained by anti-GAPDH antibody were used as extracellular control proteins.
In summary in the present application, the lentiviral vector can directly repair the defective FVIII and/or FVIII-BD gene (s) in cells, and can effectively improve the delivery efficiency and expression level of the FVIII and/or FVIII-BD gene (s) in bone marrow, which has great significance in ensuring the effectiveness of gene therapy and lays foundation for a faster resolution of hemophilia A symptoms and a more comprehensive and long-term gene therapy.
The applicant states that detailed methods of the present application are demonstrated in the present application through the above embodiments, however, the present application is not limited to the above detailed methods, and does not mean that the present application must rely on the above detailed methods to implement. It should be apparent to those skilled in the art that, for any improvement of the present application, the equivalent replacement of the raw materials of the present application, the addition of auxiliary components, and the selection of specific modes, etc., will all fall within the protection scope and the disclosure scope of the present application.
References:
1. Chang, L. -J., V. Urlacher, T. Iwakuma, Y. Cui, and J. Zucali (1999) . Efficacy and safety analyses of a recombinant human immunodeficiency virus derived vector system. Gene Therapy 6, 715-728.
2. Cui, Y., T. Iwakuma and L. -J. Chang (1999) . Contributions of viral splice sites and cis-regulatory elements to lentivirus vector functions. J Virol 73, 6171-6176.
3. Iwakuma T., Y. Cui, and L. -J. Chang (1999) . Self-inactivating lentiviral vectors with U3 and U5 modifications. Virology 261, 120-132.
4. Chang, L. -J. and Gay, E. (2001) The molecular genetics of lentiviral vectors -current and future perspectives. Current Gene Therapy 1, 237-251.
5. L-J Chang, X Liu and J He. Lentiviral siRNAs targeting multiple highly conserved RNA sequences of human immunodeficiency virus type 1. Gene Therapy (2005) 12, 1133–1144.
6. Ayed O. Ayed, Lung-Ji Chang, Jan S. Moreb. Immunotherapy for multiple myeloma: Current status and future directions. Critical Reviews in Oncology/Hematology. Volume 96, Issue 3, December 2015, Pages 399-412.
Claims (15)
- A lentiviral vector that is obtained by modifying a pTYF lentiviral vector at the 5'-end splice donor site, used for the treatment of hemophilia A, wherein the specific modifications are as follows:(a) the 5'-end splice donor site thereof is deleted or modified so that the splice donor site of the modified lentiviral vector is not a potential site for homologous recombination between the packaging vector and the reference lentivirus;(b) it still has the function of the packaging signal of a virus;wherein, the lentiviral vector further comprises a FVIII gene and/or a FVIII-BDD gene.
- The lentiviral vector according to claim 1, wherein the lentiviral vector is based on pTYF or obtained by modifying a pTYF lentiviral vector at the 5'-end splice donor site and gag AUG codon, wherein the specific modifications are as follows:(a) the 5'-end splice donor site thereof is deleted or modified so that the splice donor site of the modified lentiviral vector is not a potential site for homologous recombination between a packaging vector and the reference lentivirus;(b) the 5'-end gag AUG codon thereof is modified so that the modified lentiviral vector does not contain a gag AUG codon;(c) it still has the function of the packaging signal of a virus;wherein, the lentiviral vector further comprises a FVIII gene and/or a FVIII-BDD gene.
- The lentiviral vector according to claim 1 or 2, wherein the FVIII gene and the FVIII-BDD gene are humanized sequences.
- The lentiviral vector according to any one of claims 1 to 3, wherein the FVIII gene has the nucleotide sequence as shown in SEQ ID NO. 1, or a nucleotide sequence that shares at least 80%homology, preferably at least 85%homology, further preferably at least 95%homology therewith.
- The lentiviral vector according to any one of claims 1 to 3, wherein the FVIII-BDD gene has the nucleotide sequence as shown in SEQ ID NO. 2, or a nucleotide sequence that shares at least 80%homology, preferably at least 85%homology, further preferably at least 95%homology therewith.
- The lentiviral vector according to any one of claims 1 to 5, wherein a promoter sequence is further comprised in front of the FVIII gene and/or the FVIII-BDD gene;preferably, the promoter sequence is EF1α and/or CMV, preferably EF1α;preferably, the EF1α has the nucleotide sequence as shown in SEQ ID NO. 32, or a nucleotide sequence that shares at least 90%homology, preferably at least 95%homology therewith.
- A recombinant lentivirus that is obtained by co-transfecting a mammalian cell with the lentiviral vector pTYF according to any one of claims 1 to 6 and packaging helper plasmids pNHP and pHEF-VSV-G.
- The recombinant lentivirus according to claim 7, wherein the mammalian cell is a HEK293T cell and/or a TE671 cell.
- A method for preparing the lentivirus according to claim 7 or 8, comprising the steps of:(1) subjecting the 5'-end splice donor site of lentiviral vector pTYF to point mutation;(2) synthesizing the sequences of a promoter and a FVIII gene and/or a FVIII-BDD gene by whole gene synthesis, and inserting the same into the point-mutated lentiviral vector of step (1) ;(3) co-transfecting the constructed lentiviral vector and a packaging helper plasmid into a mammalian cell to obtain the recombinant lentivirus.
- The method according to claim 9, wherein the packaging helper plasmid in step (3) is pNHP and pHEF-VSV-G;preferably, the mammalian cell is a HEK293T cell and/or a TE671 cell;preferably, the co-transfected mammalian cell is cultured for 24-72h.
- A recombinant cell comprising the lentiviral vector according to any one of claims 1 to 6 and/or the recombinant lentivirus according to claim 7 or 8.
- The recombinant cell according to claim 11, wherein the recombinant cell is a recombinant stem cell and/or a progenitor cell, preferably a blood stem cell and/or a mesenchymal stem cell.
- A pharmaceutical composition comprising any one selected from the group consisting of the lentiviral vector according to any one of claims 1 to 6, the recombinant lentivirus according to claim 7 or 8, and the recombinant cell according to claim 11 or 12, or a combination of at least two selected therefrom.
- The pharmaceutical composition according to claim 13, wherein the composition further comprises a pharmaceutically acceptable adjuvant;preferably, the adjuvant is any one selected from the group consisting of a growth-stimulating factor, an excipient, a diluent, a carrier, a flavoring agent, a binder and a filler, or a combination of at least two selected therefrom.
- Use of the lentiviral vector according to any one of claims 1 to 6, the recombinant lentivirus according to claim 7 or 8, the recombinant cell according to claim 11 or 12, or the pharmaceutical composition according to claim 13 or 14 in the preparation of a medicament and/or an agent for the treatment of hemophilia A.
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WO2024007978A1 (en) * | 2022-07-07 | 2024-01-11 | 深圳新诺微环生物科技有限公司 | Linker peptide, fviii protein containing linker peptide or variant thereof, and use thereof |
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Patent Citations (2)
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US6207455B1 (en) * | 1997-05-01 | 2001-03-27 | Lung-Ji Chang | Lentiviral vectors |
WO2000040741A2 (en) * | 1999-01-07 | 2000-07-13 | The Government Of The United States Of America, As Represented By The Secretary Department Of Health And Human Services, The National Institutes Of Health | Lentivirus vector system |
Cited By (1)
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WO2022228087A1 (en) * | 2021-04-26 | 2022-11-03 | Beijing Meikang Geno-Immune Biotechnology Co., Ltd. | Recombinant coagulation factor viii and use thereof |
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