Classifications

• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
  • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
  • C07K14/705—Receptors; Cell surface antigens; Cell surface determinants
  • C07K14/70546—Integrin superfamily
  • C07K14/70557—Integrin beta3-subunit-containing molecules, e.g. CD41, CD51, CD61
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K31/00—Medicinal preparations containing organic active ingredients
  • A61K31/70—Carbohydrates; Sugars; Derivatives thereof
  • A61K31/7088—Compounds having three or more nucleosides or nucleotides
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
  • A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
  • A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
  • A61K47/54—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
  • A61K47/545—Heterocyclic compounds
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
  • A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
  • A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
  • A61K47/56—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule
  • A61K47/59—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes
  • A61K47/60—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic macromolecular compound, e.g. an oligomeric, polymeric or dendrimeric molecule obtained otherwise than by reactions only involving carbon-to-carbon unsaturated bonds, e.g. polyureas or polyurethanes the organic macromolecular compound being a polyoxyalkylene oligomer, polymer or dendrimer, e.g. PEG, PPG, PEO or polyglycerol
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
  • A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
• • A—HUMAN NECESSITIES
  • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
  • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
  • A61P35/00—Antineoplastic agents
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07D—HETEROCYCLIC COMPOUNDS
  • C07D471/00—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
  • C07D471/02—Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
  • C07D471/04—Ortho-condensed systems
• • C—CHEMISTRY; METALLURGY
  • C07—ORGANIC CHEMISTRY
  • C07K—PEPTIDES
  • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
  • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
  • C07K14/705—Receptors; Cell surface antigens; Cell surface determinants
  • C07K14/70546—Integrin superfamily
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
  • C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
  • C12N15/09—Recombinant DNA-technology
  • C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
  • C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
• • C—CHEMISTRY; METALLURGY
  • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
  • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
  • C12N2310/00—Structure or type of the nucleic acid
  • C12N2310/10—Type of nucleic acid
  • C12N2310/14—Type of nucleic acid interfering nucleic acids [NA]

Definitions

• Integrins are transmembrane glycoproteins that mediate cell-cell and cell-matrix interactions.
• the integrins alpha-v beta-3 (anb3) and alpha-v beta-5 (anb5) are members of the integrin superfamily of adhesion molecules and are known for being receptors for the extracellular matrix (ECM) protein vitronectin.
• ECM extracellular matrix
• Altered expression of certain integrins, including integrin anb3 and integrin anb5 are believed to contribute to tumor progression, invasiveness, and metastases.
• oligonucleotides and oligonucleotide-based therapeutics in particular (e.g., an oligonucleotide-based compound such as an antisense oligonucleotide or an RNAi agent), there continues to exist a need for ligands that are able to target integrin alpha-v beta-3 and/or integrin alpha-v beta-5 and facilitate the delivery' of these oligonucleotide-based compounds to cells expressing such integrins.
• integrin targeting ligands include anb3 and anb5, which can be employed as ligands (referred to herein as“integrin targeting ligands,” “anb3 integrin targeting ligands,”“anb3 integrin ligands,” or simply‘Integrin ligands”) to selectively direct compounds or other molecules to which they are attached to cells or tissues that express integrin anb3 and/or anb5.
• the integrin targeting ligands disclosed herein are stable in serum and have affinity for, and can bind with specificity to, these integrins.
• the integrin targeting ligands disclosed herein can be conjugated to cargo molecule(s) to facilitate the delivery of the cargo molecule(s) to cells or tissues that express integrin anb3 and/or anb5.
• Described herein are methods of delivering a cargo molecule to a tissue and/or cell expressing integrin anb3 and/or integrin anb5 in vivo, wherein the methods include administering to a subject one or more integrin targeting ligands disclosed herein that has been conjugated to one or more cargo molecules.
• a therapeutic cargo molecule e.g., an active pharmaceutical ingredient
• the methods include administering to a subject one or more integrin targeting ligands disclosed herein that has been conjugated to one or more therapeutic cargo molecules.
• RNAi agent oligonucleotide-based therapeutics
• described herein are methods of inhibiting expression of a target gene in a cell of a subject, wherein the subject is administered an effective amount of one or more oligonucleotide-based therapeutics (such as an RNAi agent) that has been conjugated to one or more integrin targeting ligands disclosed herein
• compositions that include the integrin targeting ligands disclosed herein.
• the compositions described herein can be pharmaceutical compositions or medicaments that include one or more integrin targeting ligands disclosed herein conjugated to one or more therapeutic cargo molecules, such as an RNAi agent or other cargo molecule or therapeutic substance.
• described herein are methods of treatment of a subject having a disease or disorder mediated at least in part by expression of a target gene in a cell that expresses integrin anb3, wherein the methods include administering to a subject in need thereof an effective amount of a pharmaceutical composition, wherein the pharmaceutical composition includes one or more oligonucleotide-based therapeutics capable of inhibiting expression of a targeted gene, such as an RNAi agent, that is conjugated to one or more integrin targeting ligands disclosed herein.
• described herein are methods of treatment of a subject having a disease or disorder mediated at least in part by expression of a target gene in a tumor cell, wherein the methods include administering to a subject in need thereof an effective amount of a pharmaceutical composition, wherein the pharmaceutical composition includes one or more oligonucleotide-based therapeutics capable of inhibiting expression of a targeted gene, such as an RNAi agent, conjugated to one or more integrin targeting ligands disclosed herein.
• described herein are methods of treatment of a subject having a disease or disorder mediated at least in part by expression of a target gene m a kidney tumor cell, such as a clear cell renal carcinoma tumor cell, wherein the methods include administering to a subject in need thereof an effective amount of a pharmaceutical composition, wherein the pharmaceutical composition includes one or more oligonucleotide-based therapeutics capable of inhibiting expression of a targeted gene, such as an RNAi agent, conjugated to one or more integrin targeting ligands disclosed herein.
• an integrin targeting ligand disclosed herein includes the structure of the following formula:
• Y is optionally substituted Ci-Cs alkylene
• Z is O, NR 3 , or S
• n is an integer from 1 to 8;
• R 5 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocyclyl, optionally substituted cycloalkyl or 5 comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule
• each instance of R 3 is independently selected from the group consisting of H and optionally substituted alkyl, or R 3 comprises a cargo molecule;
• R 4 is H or optionally substituted alkyl
• Y, R 1 , R 2 , any instance of R 3 , and R 4 comprises a cargo molecule.
• Any of the integrin targeting ligands disclosed herein can be linked to a cargo molecule, a reactive group, and/or a protected reactive group. Linking to a reactive group, for example, can be used to facilitate conjugation of the integrin targeting ligand to a cargo molecule.
• the integrin targeting ligands disclosed herein can increase targeting of a cargo molecule to a cell expressing an integrin, including anb3 integrin and/or anb5 integrin.
• a cargo molecule can be, but is not limited to, a pharmaceutically active ingredient or compound, a prodrug, or another substance with known therapeutic benefit.
• a cargo molecule can be, but is not limited to, a small molecule, an antibody, an antibody fragment, an immunoglobulin, a monoclonal antibody, a label or marker, a lipid, a natural or modified oligonucleotide, a modified oligonucleotide-based compound (e.g., an antisense oligonucleotide or an RNAi agent), a natural or modified nucleic acid, a peptide, an aptamer, a polymer, a polyamine, a protein, a toxin, a vitamin, a polyethylene glycol, a hapten, a digoxigenin, a biotin, a radioactive atom or molecule, or a fiuorophore.
• a small molecule an antibody, an antibody fragment, an immunoglobulin, a monoclonal antibody, a label or marker, a lipid, a natural or modified oligonucleotide, a modified
• a cargo molecule includes a pharmaceutically active ingredient or a prodrug.
• a cargo molecule is or includes an oligonucleotide-based therapeutic, such as an antisense compound or an RNAi agent.
• a cargo molecule is or includes an oligonucleotide-based compound that is a pharmaceutically active ingredient.
• a cargo molecule is or includes an RNAi agent that is a pharmaceutically active ingredient.
• Described herein is the use of the described anb3/5 integrin targeting ligands to target and deliver a cargo molecule to a cell that expresses integrins.
• the cargo molecule can be delivered to a cell in vitro , in situ, ex vivo, or in vivo.
• compositions that include one or more of the integrin targeting ligands described herein.
• compositions comprising one or more integrin targeting ligands disclosed herein include one or more oligonucleotide-based compounds, such as one or more RNAi agents, to be delivered to a cell in vivo.
• described herein are compositions for delivering an R Ai agent to a cell in vivo, wherein the RNAi agent is linked to one or more integrin targeting ligands.
• compositions that include one or more integrin targeting ligands are described.
• a composition comprises a pharmaceutically acceptable excipient.
• a composition that includes one or more integrin targeting ligands comprises one or more other pharmaceutical substances or pharmaceutically active ingredients or compounds.
• medicaments that include one or more integrin targeting ligands are described herein.
• compositions that include one or more integrin targeting ligands disclosed herein can be delivered in vivo or in vitro to various cancer cells, including for example, clear cell renal carcinoma tumor cells (e.g., A498), other kidney cancer cells (e.g., ACHN, CAKI-2, 769-P, 786-0), melanoma cells (e.g., A375), glioblastoma cells (e.g., U87MG), pancreatic cancer cells (e.g , (PANC-l), lung cancer cells (e.g., H460, H661 , HI 573, H2126), colon cancer cells (e.g., HT29, HCT116), liver cancer cells (e.g., Hep2G, Hep3B), breast cancer cells (e.g., MCF7, SK- BR3), prostate cancer cells (e.g., DU 145, PCS, LNCaP, MDA-PCa-2b), oral cancer cells (e.g., DU
• the present disclosure provides methods that include the use of one or more integrin targeting ligands and/or compositions as described herein and, if desired, bringing the disclosed integrin targeting ligands and/or compositions into a form suitable for administration as a pharmaceutical product.
• the disclosure provides methods for the manufacture of the ligands and compositions, e.g., medicaments, described herein.
• compositions that include one or more integrin targeting ligands can be administered to subjects in vivo using routes of administration known in the art to be suitable for such administration in view of the cargo molecule sought to be administered, including, for example, subcutaneous, intravenous, intratumoral, inhaled (aerosol or dry powder formulations), intranasal, intraperitoneal, intradermal, transdermai, oral, sublingual, or topical administration.
• routes of administration known in the art to be suitable for such administration in view of the cargo molecule sought to be administered, including, for example, subcutaneous, intravenous, intratumoral, inhaled (aerosol or dry powder formulations), intranasal, intraperitoneal, intradermal, transdermai, oral, sublingual, or topical administration.
• the compositions that include one or more integrin targeting ligands may be administered for systemic deliver ⁇ -, for example, by intravenous or subcutaneous administration.
• administrada for delivering one or more desired cargo molecule(s) to a clear cell renal carcinoma tumor cell in vivo, wherein the methods include administering to the subject one or more integrin targeting ligands conjugated to one or more cargo molecules.
• disclosed herein are methods of delivering an oligonucleotide- based compound to a tumor cell in vivo, wherein the methods include administering to the subject one or more integrin targeting ligands conjugated to the one or more oligonucleotide- based compounds.
• disclosed herein are methods of delivering an RNAi agent to a tumor cell in vivo, wherein the methods include administering to the subject one or more integrin targeting ligands conjugated to the one or more RNAi agents.
• RNAi agent conjugated to one or more ligands having affinity for anb3 integrin and/or anb5 integrin include administering to the subject an RNAi agent conjugated to one or more ligands having affinity for anb3 integrin and/or anb5 integrin.
• Described herein are compounds that have affinity for integrins, exhibit serum stability in vivo, and can be used as ligands to facilitate the deliver ⁇ ' of cargo molecules to cells and/or tissues that express integrins, such as integrin anb3 and/or integrin anb5.
• the integrin targeting ligands can be used to target cells that express integrins in vitro, in situ, ex vivo, and/or in vivo.
• the mtegrin targeting ligands disclosed herein can be conjugated to one or more cargo molecules to preferentially direct and target the cargo molecules to cells or tissues that express integrins, including mtegrin anb3 and/or integrin anb5.
• the cargo molecules include or consist of pharmaceutically active compounds. In some embodiments, the cargo molecules include or consist of oligonucleotide-based compounds, such as RNAi agents. In some embodiments, the integrin targeting ligands disclosed herein are conjugated to cargo molecules to direct the cargo molecules to tumor cells in vivo. In some embodiments, the integrin targeting ligands disclosed herein are conjugated to cargo molecules to direct the cargo molecules to clear cell renal carcinoma tumor cells in vivo.
• the invention provides integrin ligands of the structure: (Formula I),
• Y is optionally substituted alkylene
• Z is O, NR 3 , or S
• n is an integer from 1 to 8;
• R 1 is optionally substituted and, optionally substituted heteroaryl, optionally substituted heterocyclyl, optionally substituted cycloalkyl or R 1 comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule
• each instance of R 3 is independently selected from the group consisting of H and optionally substituted alkyl, or R 3 comprises a cargo molecule;
• R 4 is H or optionally substituted alkyl
• R 1 is selected from the group consisting of:
• CM comprises a cargo molecule
• Y is Ci to C6 alkylene.
• an integrin targeting ligand disclosed herein includes the structure of the following formula: (Formula II), or a pharmaceutically acceptable salt thereof wherein
• n is an integer from 1 to 8;
• R 1 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocyclyl, optionally substituted cycloalkyl or R ! comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule
• R 4 is H or optionally substituted alkyl
• R 1 or R 2 comprises a cargo molecule
• an integrin targeting ligand disclosed herein includes the structure of the following formula: (Formula III), or a pharmaceutically acceptable salt thereof wherein
• n is an integer from 1 to 8;
• R 1 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocyclyl, optionally substituted cycloalkyl or R ! comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule
• R 3 is selected from the group consisting of H and optionally substituted alkyl, or R 3 comprises a cargo molecule;
• R 4 is H or optionally substituted alkyl
• R 1 , R 2 and R 3 comprises a cargo molecule.
• an integrin targeting ligand disclosed herein includes the structure of the following formula: (Formula IV), or a pharmaceutically acceptable salt thereof, wherein
• n is an integer from 1 to 8;
• R 1 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocydyl, optionally substituted cycloalkyl or R* comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule
• R 3 is selected from the group consisting of H and optionally substituted alkyl, or R 3 comprises a cargo molecule;
• R 4 is H or optionally substituted alkyl
• R 1 , R 2 and R 3 comprises a cargo molecule.
• an integrin targeting ligand disclosed herein includes the structure of the following formula: (Formula V), or a pharmaceutically acceptable salt thereof, wherein
• n is an integer from ! to 8;
• R 3 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocydyl, optionally substituted cycloalkyl or R 3 comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule; each instance of R 3 is independently selected from the group consisting of FI and optionally substituted alkyl, or R 3 comprises a cargo molecule;
• R 4 is H or optionally substituted alkyl
• R 1 , R 2 and R 3 comprises a cargo molecule.
• an integrin targeting ligand disclosed herein includes the structure of the following formula: (Formula VI), or a pharmaceutically acceptable salt thereof, wherein
• n is an integer from 1 to 8;
• R 1 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocyclyl, optionally substituted cycloalkyl or R* comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule
• each instance of R 3 is independently selected from the group consisting of H and optionally substituted alkyl, or R 3 comprises a cargo molecule;
• R 4 is H or optionally substituted alkyl
• R 1 , R 2 and R 3 comprises a cargo molecule.
• an integrin targeting ligand disclosed herein includes the structure of the following formula: (Formula Vll), or a pharmaceutically acceptable salt thereof, wherein
• R 1 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocyclyl, optionally substituted cycloalkyl or R f comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule:
• R 4 is FI or optionally substituted alkyl
• R 1 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocyclyl, optionally substituted cycloalkyl or R ! comprises a cargo molecule.
• R 1 is selected from the group consisting
• Integrin Targeting Ligand Precursors indicates the point of attachment and comprises a cargo molecule.
• the invention provides integrin targeting ligand precursors which can be used to attach an integrin targeting ligand to a moiety comprising a cargo molecule.
• Y is optionally substituted aikylene
• Z is O, NR 3 , or S
• n is an integer from 1 to 8;
• R 5 is optionally substituted aryl, optionally substituted heteroaryl, optionally substituted heterocyelyl, optionally substituted cycloalkyl or 5 comprises a cargo molecule;
• R 2 is H, optionally substituted alkyl, or R 2 comprises a cargo molecule
• each instance of R 3 is independently selected from the group consisting of H and optionally substituted alkyl, or R 3 comprises a cargo molecule;
• R 4 is H or optionally substituted alkyl
• the reactive group comprises an azide
• the integrin targeting ligands disclosed herein have structures that include, consist of, or consist essentially of, any of the structures represented by the following:
• an integrm targeting ligand disclosed herein can be conjugated to one or more (e.g., 2, 3, 4, 5, 6, 7, 8, 9, 10; or 1 to 10, 2 to 10, 1 to 9, 1 to 8, 1 to 7, 1 to 6, 1 to 5, 1 to 4, 1 to 3, 1 to 2, 2 to 10, 3 to 10, 4 to 10, 5 to 10, 2 to 5, 2 to 4, or 3 to 5) cargo molecules (e.g., any of the cargo molecules described herein or known in the art).
• cargo molecules e.g., any of the cargo molecules described herein or known in the art.
• more than one integrm targeting ligand disclosed herein e.g., 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30; or 1 to 30, 1 to 25, 1 to 20, 1 to 15, 1 to 10, 1 to 5, 5 to 30, 5 to 25, 5 to 20, 5 to 15, 5 to 10,
• integrin targeting ligands can be conjugated to one cargo molecule (e.g., any of the cargo molecules described herein or known in the art).
• the integrin targeting ligands disclosed herein are optionally conjugated to one or more cargo molecules via a linking group, such as, for example, a polyethylene glycol (PEG) group.
• PEG polyethylene glycol
• the integrin targeting ligands disclosed herein are optionally conjugated to one or more cargo molecules via a scaffold that includes at least one attachment point for each ligand and at least one attachment point for each cargo molecule.
• the integrin targeting ligands comprise, consist of, or consist essentially of, an integrin targeting ligand conjugated to one cargo molecule.
• the integrin targeting ligands comprise, consist of, or consist essentially of, an integrin targeting ligand conjugated to more than one cargo molecule.
• the integrin targeting ligand comprises, consists of, or consists essentially of, any of Structure la. Structure 2a, Structure 2, 1a, Structure 2,2a, Structure 2.3a, Structure 2.4a, Structure 2 5a, Structure 2.6a, Structure 2.8a, Structure 2.9a, Structure 2.10a, Structure 2.11a, Structure 28a, Structure 29a, Structure 30a, Structure 31a, Structure 32a, Structure 33a, Structure 34a, Structure 36a, Structure 37a, Structure 38a, Structure 39a, Structure 40a, and Structure 41a each as disclosed herein.
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure la is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• an integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure: (Structure lb),
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• an integrin targeting ligand precursor can be synthesized to include an azide reactive group, and comprises the following structure:
• a reactive group (or protected reactive group) can be used to facilitate the conjugation of the integrin targeting ligand to a molecule of interest, e.g., to a cargo molecule (either directly or via one or more scaffolds and/or linkers).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting of Structure 2a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure: (Structure 2b), wherein X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2. la is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.2a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.3a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure: (Structure 2.3c).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.4a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.5a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.6a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can he synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• the integrin targeting ligands can be synthesized to include an azide reactive group, and comprises the following structure:
• a reactive group (or protected reactive group) can be used to facilitate the conjugation of the integrin targeting ligand to a molecule of interest, e.g., to a cargo molecule (either directly or via one or more scaffolds and/or linker).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.7a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligands can be synthesized to include an azide reactive group, and comprises the following structure:
• a reactive group (or protected reactive group) can be used to facilitate the conjugation of the integrin targeting ligand to a molecule of interest, e.g , to a cargo molecule (either directly or via one or more scaffolds and/or linker).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.8a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligands can be synthesized to include an azide reactive group, and comprises the following structure:
• a reactive group (or protected reactive group) can be used to facilitate the conjugation of the integrin targeting ligand to a molecule of interest, e.g., to a cargo molecule (either directly or via one or more scaffolds and/or linker).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.9a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligands can be synthesized to include an azide reactive group, and comprises the following structure:
• a reactive group (or protected reactive group) can be used to facilitate the conjugation of the integrin targeting ligand to a molecule of interest, e.g., to a cargo molecule (either directly or via one or more scaffolds and/or linker).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.10a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• the integrin targeting ligands can be synthesized to include an azide reactive group, and comprises the following structure:
• a reactive group (or protected reactive group) can be used to facilitate the conjugation of the integrin targeting ligand to a molecule of interest, e.g , to a cargo molecule (either directly or via one or more scaffolds and/or linker).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 2.1 la is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure: (Structure
• a reactive group (or protected reactive group) can be used to facilitate the conjugation of the mtegrin targeting ligand to a molecule of interest, e.g., to a cargo molecule (either directly or via one or more scaffolds and/or linker).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 28a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure: (Structure 28c).
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 29a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure: (Structure 29c).
• an integrm targeting ligand disclosed herein comprises the following structure
• the integrm targeting ligand of Structure 30a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure;
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 31a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 32a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 33a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure: (Structure 33c).
• an integrm targeting ligand disclosed herein comprises th following structure:
• the integrin targeting ligand of Structure 34a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 36a is linked to one or more cargo molecules (e.g., R Ai agent(s)).
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 37a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 38a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 39a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 40a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• an integrin targeting ligand disclosed herein comprises the following structure:
• the integrin targeting ligand of Structure 41a is linked to one or more cargo molecules (e.g., RNAi agent(s)).
• cargo molecules e.g., RNAi agent(s)
• the integrin targeting ligand can be synthesized to include a reactive group, a protected reactive group, or a cargo molecule, and comprises the following structure:
• X includes a reactive group, a protected reactive group, or a cargo molecule (e.g., an RNAi agent).
• the integrin targeting ligand can be synthesized to include an azide reactive group, and comprises the following structure:
• alkyl refers to a saturated aliphatic hydrocarbon group, straight chain or branched, having from 1 to 10 carbon atoms unless otherwise specified.
• “Ci-Ce alkyl” includes alkyl groups having 1, 2, 3, 4, 5, or 6 carbons in a linear or branched arrangement.
• alkyl groups include methyl, ethyl, iso propyl, fcrr-butyl, «-hexyl
• aminoalkyl refers to an alkyl group as defined above, substituted at any position with one or more ammo groups as permitted by normal valency.
• the amino groups may be unsubstituted, monosubstituted, or di-substituted.
• Non-limiting examples of aminoalkyl groups include aminomethyl, dimethylaminomethyl, and 2-aminoprop- 1 ⁇ yl.
• cycloalkyl means a saturated or unsaturated nonaromatic hydrocarbon ring group having from 3 to 14 carbon atoms, unless otherwise specified.
• Non- limiting examples of cycloalkyl groups include, but are not limited to, cyclopropyl, methyl- cyclopropyl, 2,2-dimethyl-cyclobutyl, 2 -ethyl-cyclopentyl, and cyclohexyl.
• Cycloalkyls may include multiple spiro- or fused rings. Cycloalkyl groups are optionally mono-, di-, tri-, tetra- , or penta-substituted on any position as permitted by normal valency.
• alkenyl refers to a non-aromatic hydrocarbon radical, straight, or branched, containing at least one carbon-carbon double bond, and having from 2 to 10 carbon atoms unless otherwise specified. Up to five carbon-carbon double bonds may be present in such groups.
• “C2-C6” alkenyl is defined as an alkenyl radical having from 2 to 6 carbon atoms. Examples of alkenyl groups include, but are not limited to, ethenyl, propenyl, butenyl, and cyclohexenyl.
• the straight, branched, or cyclic portion of the alkenyl group may contain double bonds and is optionally mono-, di-, tri-, teira-, or penta-substituted on any position as permitted by normal valency.
• the term“cydoalkenyi” means a monocyclic hydrocarbon group having the specified number of carbon atoms and at least one carbon-carbon double bond.
• the term“alkynyl” refers to a hydrocarbon radical, straight or branched, containing from 2 to 10 carbon atoms, unless otherwise specified, and containing at least one carbon-carbon triple bond. Up to 5 carbon-carbon triple bonds may be present.
• “Ci-Ce alkynyl” means an alkynyl radical having from 2 to 6 carbon atoms.
• alkynyl groups include, but are not limited to, ethynyl, 2-propynyl, and 2-butynyl.
• the straight or branched portion of the alkynyl group may be optionally mono-, di-, tri-, tetra-, or penta- substituted on any position as permitted by normal valency.
• alkoxyl or“alkoxy” refers to -O-alkyl radical having the indicated number of carbon atoms.
• C1-0 alkoxy is intended to include Ci, C2, Cs, Cr, Cs, and Ce alkoxy groups.
• C -g alkoxy is intended to include Ci, C2, C3, Ci, C5, Ce, C7, and Cg alkoxy groups.
• alkoxy examples include, but are not limited to, methoxy, ethoxy, n-propoxy, i-propoxy, n-butoxy, s-butoxy, t-butoxy, n-pentoxy, s-pentoxy, n-heptoxy, and n-oetoxy.
• keto refers to any alkyl, alkenyl, alkynyl, cycloalkyl, cycloalkenyl, heterocyclyl, heteroaryl, or aryl group as defined herein attached through a carbonyl bridge.
• keto groups include, but are not limited to, aikanoyi (e.g , acetyl, propionyl, butanoyl, pentanoyl, or liexanoy!), a!kenoy! (e.g., acry!oy! alkynoy!
• aryioyi e.g., benzoyl
• heteroaryloyl e.g., pyrroloyl, imidazoloyl, quinolinoyl, or pyridinoyl
• alkoxy carbonyl refers to any alkoxy group as defined above attached through a carbonyl bridge (i.e., -C(G)Q-aikyi).
• alkoxy carbonyl groups include, but are not limited to, methoxycarbonyl, ethoxycarbonyl, iso-propoxycarbonyi, n- propoxy carbonyl, t-butoxy carbonyl, benzyloxycarbonyl or n-pentoxy carbonyl.
• aryloxy carbonyl refers to any aryl group as defined herein attached through an oxy carbonyl bridge (i.e., -C(O)O-aryl).
• aryloxy carbonyl groups include, but are not limited to, phenoxy carbonyl and naphtbyloxy carbonyl.
• heteroaryloxycarbonyl refers to any heteroaryl group as defined herein attached through an oxy carbonyl bridge (i.e., -C(O)O-heteroaiyl).
• heteroaryloxycarbonyl groups include, but are not limited to, 2-pyridyloxycarbonyl, 2 oxazolylox carbonyl, 4-thiazolylox carbonyl, or pyrimidinyloxy carbonyl.
• aryl or“aromatic” means any stable monocyclic or polycyclic carbon nng of up to 6 atoms in each ring, wherein at least one ring is aromatic.
• aryl groups include, but are not limited to, phenyl, naphthyl, anthracenyl, tetrahydronaphthyl, indany!, and biphenyl. In cases where the aryl substituent is bicychc and one ring is non- aromatic, it is understood that attachment is via the aromatic ring.
• groups are optionally mono-, di-, tri-, tetra-, or penta-substituted on any position as permited by normal valency.
• heteroaryl represents a stable monocyclic or polycyclic ring of up to 7 atoms in each ring, wherein at least one ring is aromatic and contains from 1 to 4 heteroatoms selected from the group consisting of O, N, and S.
• heteroaryl groups include, but are not limited to, acridinyl, carbazolyl, cmnoiiny!, quinoxalinyl, pyrrazolyi, indolyl, benzotriazolyl, furanyl, thienyl, benzothienyl, benzofuranyl, benziinidazolonyl, benzoxazolonyl, quinolinyl, isoquinoiiny!, dihydroisoindo!onyl, imidazopyridinyl, isoindolonyl, indazolyl, oxazoiyl, oxadiazolyl, isoxazolyl, indolyl, pyrazinyl, pyridazinyl, pyridinyl, pyrimidinyl, pyrrolyl, and tetrahydroquinoline.
• ⁇ Seteroafy I is also understood to include the N -oxide derivative of any nitrogen-containing heteroaryl. in cases where the heteroaryl substituent is bi cyclic and one ring is non-aromatic or contains no heteroatoms, it is understood that attachment is via the aromatic ring or via the heteroatom containing nng. Heteroaryl groups are optionally mono-, di-, tri-, tetra-, or penta-substituted on any position as permitted by normal valency.
• heterocycle means a 3- to 14-membered aromatic or nonaromatic heterocycle containing from 1 to 4 heteroatoms selected from the group consisting of O, N, and S, including polycyclic groups.
• heterocyclic is also considered to be synonymous with the terms “heterocycle” and “heterocyclyl” and is understood as also having the same definitions set forth herein.
• Heterocyclyl includes the above mentioned heteroaryls, as well as dihydro and tetrahydro analogs thereof.
• heterocyclyl groups include, but are not limited to, azetidinyl, benzoirmdazolyl, benzofuranyl, benzofurazanyl, benzopyrazolyl, benzotriazolyl, benzothiophenyl, henzoxazoly!, carbazolyl, carbolinyl, cinnoliny!, furanyl, inndazo!yl, indolinyl, indolyl, indolazinyl, indazolyl, isobenzofuranyl, isomdolyl, isoqumolyl, isotluazolyl, isoxazolyl, naphthpyridinyl, oxadiazolyl, oxooxazolidinyl, oxazoiyl, oxazoline, oxopiperazinyl, oxopyrrolidinyl, oxomorpho!iny!, isoxazoline, oxazo
• Heterocyciyl groups are optionally mono-, di-, tri-, tetra-, or penta-substituted on any position as permitted by normal valency.
• the terms“treat,”“treatment,” and the like mean the methods or steps taken to provide relief from or alleviation of the number, severity, and/or frequency of one or more symptoms of a disease in a subject.
• “treat” and“treatment” may include the prevention, management, prophylactic treatment, and/or inhibition of the number, severity' , and/or frequency of one or more symptoms of a disease in a subject.
• the phrase“deliver to a cell,” and the like, when referring to a cargo molecule, means functionally delivering the cargo molecule to the ceil.
• the phrase “functionally delivering,” means delivering the cargo molecule to the ceil in a manner that enables the cargo molecule to have the expected biological activity.
• the expected biological activity is, for example, sequence-specific inhibition of gene expression.
• the term“isomers” refers to compounds that have identical molecular formulae, but that differ in the nature or the sequence of bonding of their atoms or in the arrangement of their atoms in space. Isomers that differ in the arrangement of their atoms in space are termed“stereoisomers.” Stereoisomers that are not mirror images of one another are termed“diastereoisomers,” and stereoisomers that are non-superimposable mirror images are termed“enantiomers,” or sometimes optical isomers. A carbon atom bonded to four non identical substituents is termed a“chiral center.”
• a linking group is one or more atoms that connects one molecule or portion of a molecule to another to second molecule or second portion of a molecule.
• the terms linking group and spacers are sometimes used interchangeably.
• the term scaffold is sometimes used interchangeably with a linking group.
• a linking group can include or consist of a PEG group or PEG moiety.
• the term linked when referring to the connection between two molecules means that two molecules are joined by a covalent bond or that two molecules are associated via nonco valent bonds (e.g., hydrogen bonds or ionic bonds).
• the association between the two different molecules has a KD of less than 1 x 1() 4 M (e.g., less than 1 x 10 5 M, less than 1 x l(f 6 M, or less than 1 x l(f 7 M) in physiologically acceptable buffer (e.g., phosphate buffered saline).
• physiologically acceptable buffer e.g., phosphate buffered saline.
• the term linked as used herein may refer to the connection between a first compound and a second compound either with or without any intervening atoms or groups of atoms.
• the compounds and compositions disclosed herein may have certain atoms (e.g., N, O, or S atoms) in a protonated or deprotonated state, depending upon the environment in which the compound or composition is placed. Accordingly, as used herein, the structures disclosed herein envisage that certain functional groups, such as, for example, OH, 8H, or NH, may be protonated or deprotonated. The disclosure herein is intended to cover the disclosed compounds and compositions regardless of their state of protonation based on the pH of the environment, as would be readily understood by the person of ordinary skill in the art.
• the phrase“consisting of’ excludes any element, step, or ingredient not specified in the claim.
• the phrase“consisting essentially of’ limits the scope of a claim to the specified materials or steps and those that do not materially affect the basic and novel charactenstic(s) of the claimed invention.
• one or more anb3/5 integrin ligands may be linked to one or more cargo molecules.
• only one integrin ligand is conjugated to a cargo molecule (referred to herein as a“monodentate” or“monovalent” ligand).
• two integrin ligands are conjugated to a cargo molecule (referred to herein as a“bi dentate” or“divalent” targeting group).
• three integrin ligands are conjugated to a cargo molecule (referred to herein as a“tri dentate” or“bivalent” targeting group).
• integrin ligands are conjugated to a cargo molecule (referred to herein as a“tetradentate” or“tetravalent” targeting group). In some embodiments, more than four integrin ligands are conjugated to a cargo molecule.
• integrin ligand may be conjugated directly to the cargo molecule.
• an integrin ligand disclosed herein can be conjugated to a cargo molecule via a scaffold or other linker structure.
• the integrin ligands disclosed herein include one or more scaffolds.
• Scaffolds also sometimes referred to m the art as linking groups or linkers, can be used to facilitate the linkage of one or more cargo molecules to one or more integrin ligands disclosed herein.
• Useful scaffolds compatible with the ligands disclosed herein are generally known in the art.
• Non-limiting examples of scaffolds that can be used with the anb3 integrin ligands disclosed herein include, but are not limited to polymers and polyamino acids (e.g., bis- glutamic acid, poly-L-lysine, etc.).
• scaffolds may include cysteine linkers or groups, DBCO-PEG1-24-NHS, Propargyl-PEGi-24-NHS, and/or multidentate DBCO and/or propargyl moieties.
• the scaffold used for linking one or more integrin ligands disclosed herein to one or more cargo molecules has the following structure:
• Scaffold 1 facilitates efficient conjugation with both the integrin ligand monomers and the one or more cargo molecules.
• Scaffold 1 includes an amine reactive /7-nitrophenol (also called 4-nitrophenoI) ester, an amide linkage, and three PEG? unit arms, as well as terminal alkynes.
• the 4-nitrophenol ester can be conjugated with the primary amine on a cargo molecule, such as the primary amine on an RNA trigger formulated with a terminal amine group (e.g., NH?-(CH?)6), through amide formation.
• the terminal alkyne can be conjugated with azido modified ligands (both peptides and small molecules) through copper-catalyzed click chemistry.
• the cargo molecule is an RNAi agent.
• Scaffold 1 may be attached to the terminal end of an RNAi agent, such as to the 5’ terminal end of the sense strand of an RNAi agent.
• the 5’ terminal end of the sense strand of an RNAi agent may be modified to include a C 6 amine (-(CH 2 )6-NH 2 ) attached to the 5’ end of the 5’ terminal nucleotide of the RNAi agent.
• An RNAi agent having such a Cr, amine modification (or another other modification resulting in a terminal amine) may be readily conjugated to Scaffold 1, as shown by the representation in the following structure:
• alkyne groups of Structure 380 may then be conjugated to the integrin ligands disclosed herein to form tridentate integrin targeting groups.
• a scaffold may be synthesized using DBCG (dibenzocyclooclyne), which can be represented by the following structure:
• triazole groups are formed between the RNAi agent and the integrin ligands disclosed herein, as shown in the following general structure:
• a scaffold may be synthesized as a phosphoramidite compound, an example of which is shown in the following structure:
• the trialkyne compound of Structure 400 allows for a tri dentate ligand to be readily coupled to the 5’ terminal end of the sense strand of an RNAi agent through a click reaction of an alkyne with a targeting ligand comprising an azide.
• an mtegrin targeting group disclosed herein comprises Structure la, Structure 2a, Structure 2.1a, Structure 2.2a, Structure 2.3a, Structure 2.4a, Structure 2.5a, Structure 2.6a, Structure 2.7a, Structure 2,8a, Structure 2,9a, Structure 2.10a, Structure 2.1 la, Structure 28a, Structure 29a, Structure 30a, Structure 3 l a.
• an anb3 tridentate targeting group disclosed herein comprises three ligands of Structure 2a, and can be represented by the following structure:
• a tridentate targeting group disclosed herein comprises three ligands of Structure 2a, and can be represented by the following structure:
• a tridentate targeting group disclosed herein comprises three ligands of Structure 2a, and can be represented by the following structure:
• a tridentate targeting group comprising a giutaric linker comprises three ligands of Structure 2a, and can be represented by the following structure:
• a tridentaie targeting group disclosed herein comprises three ligands of Structure 2a, and can be represented by the following structure:
• a tridentate targeting group disclosed herein comprises three ligands of Structure 2a, and can be represented by the following structure:
• nnn ⁇ TM ⁇ wuww ' indicates any suitable scaffold or linker that can be used to bind a ligand and a cargo molecule
• an anb3 tridentate targeting group conjugated to an RNAi agent comprises three ligands of Structure 2a, and can be represented by the following structure:
• RNAi agent indicates any suitable scaffold or linker that can be used to bind a ligand and a RNAi agent, and indicates a RNAi agent.
• Reactive groups are well known in the art and provide for formation of covalent linkages between two molecules or reactants. Suitable reactive groups for use in the scope of the inventions herein include, hut are not limited to: amino groups, amide groups, carboxylic acid groups, azides, alkynes, propargy!
• BCN bis(biclclo[6.1.0]nonyne, DBCQ(dibenzocyeloociyne) thiols, maieimide groups, aminooxy groups, N- hydroxysuccinimide (NHS) or other activated ester (for example, PNP, TFP, PFP), bromo groups, aldehydes, carbonates, tosylates, tetrazines, trans-cyclooctene (TCO), hydrazides, hydroxyl groups, disulfides, and orthopyridyl disulfide groups.
• Incorporation of reactive groups can facilitate conjugation of an integrin ligand disclosed herein to a cargo molecule.
• Conjugation reactions are well known in the art and provide for formation of covalent linkages between two molecules or reactants. Suitable conjugation reactions for use in the scope of the inventions herein include, but are not limited to, amide coupling reaction, Michael addition reaction, hydrazone formation reaction and click chemistry cycloaddition reaction.
• the integrin targeting ligands disclosed herein are synthesized as a tetrafluorophenyl (TFP) ester, which can be displaced by a reactive amino group to attach a cargo molecule.
• the integrin targeting ligands disclosed herein are synthesized as an azide, which can be conjugated to a propargy! or DBCG group, for example, via click chemistry cycloaddition reaction, to attach a cargo molecule.
• Protected reactive groups are also commonly used in the art.
• a protecting group provides temporar ' chemical transformation of a reactive group into a group that does not react under conditions where the non-protected group reacts, e.g, to provide chemo-selectivity in a subsequent chemical reaction.
• Suitable protected reactive groups for use in the scope of the inventions herein include, but are not limited to, BOC groups (t-butoxy carbonyl), Fmoc (9- fluorenylmethoxy carbonyl), carboxybenzy! (CBZ) groups, benzyl esters, and PBF (2, 2, 4,6,7- pentamethyldihydrobenzofuran-5-sulfonyl).
• Cargo Molecules (including RNAi agents)
• a cargo molecule is any molecule which, when detached from the integrin ligands described herein, would have a desirable effect on a cell comprising an integrin receptor.
• a cargo molecule can be, but is not limited to, a pharmaceutical ingredient, a drug product, a prodrug, a substance with a known therapeutic benefit, a small molecule, an antibody, an antibody fragment, an immunoglobulin, a monoclonal antibody, a label or marker, a lipid, a natural or modified nucleic acid or polynucleotide, a peptide, a polymer, a poly amine, a protein, an aptamer, a toxin, a vitamin, a PEG, a hapten, a digoxigenin, a biotin, a radioactive atom or molecule, or a fluorophore.
• one or more cargo molecules are linked to one or more integrin ligands to target the cargo molecules to a cell expressing integrin anb3 and/or integrin anb5.
• the one or more cargo molecules is a pharmaceutical ingredient or pharmaceutical composition.
• the one or more cargo molecules is an oligonucleotide-based compound.
• an“oligonucleotide-based compound” is a nucleotide sequence containing about 10-50 (e.g., 10 to 48, 10 to 46, 10 to 44, 10 to 42, 10 to 40, 10 to 38, 10 to 36, 10 to 34, 10 to 32, 10 to 30, 10 to 28, 10 to 26, 1 0 to 24, 10 to 22, 10 to
• an oligonucleotide-based compound has a nucleobase sequence that is at least partially complementary to a coding sequence in an expressed target nucleic acid or target gene (e.g., the gene transcript or mRNA of a target gene) within a cell.
• target nucleic acid or target gene e.g., the gene transcript or mRNA of a target gene
• the oligonucleotide-based compounds upon deli very to a cell expressing a gene, are able to inhibit the expression of the underlying gene, and are referred to herein as“expression-inhibiting oligonucleotide-based compounds.” The gene expression can be inhibited in vitro or in vivo.
• Oligonucleotide-based compounds include, but are not limited to: single-stranded oligonucleotides, single-stranded antisense oligonucleotides, short or small interfering RNAs (siRNAs), double-strand RNAs (dsRNA), micro RNAs ⁇ mi RNAs i.. short hairpin RNAs
• an oligonucleotide-based compound is a single-stranded oligonucleotide, such as an antisense oligonucleotide. In some embodiments, an oligonucleotide-based compound is a double- stranded oligonucleotide. In some embodiments, an oligonucleotide-based compound is a double-stranded oligonucleotide that is an RNAi agent.
• the one or more cargo molecules is/are an "‘RNAi agent,” which as defined herein is a chemical composition that includes an RNA or RNA-like (e.g., chemically modified RNA) oligonucleotide molecule that is capable of degrading or inhibiting translation of messenger RNA (mRNA) transcripts of a target rnRNA in a sequence specific manner.
• RNAi agents may operate through the RNA interference mechanism (i.e., inducing RNA interference through interaction with the RNA interference pathway machinery (RNA-induced silencing complex or RISC) of mammalian cells), or by any alternative meehanism(s) or pathway(s).
• RNAi agents While it is believed that RNAi agents, as that term is used herein, operate primarily through the RNA interference mechanism, the disclosed RNAi agents are not bound by or limited to any particular pathway or mechanism of action.
• RNAi agents disclosed herein are comprised of a sense strand and an antisense strand, and include, hut are not limited to: short or small interfering RNAs (siRNAs), double-strand RNAs (dsRNA), micro RNAs (miRNAs), short hairpin RNAs (shRNA), and dicer substrates.
• the antisense strand of the RNAi agents described herein is at least partially complementary to the mRNA being targeted.
• RNAi agents can include one or more modified nucleotides and/or one or more non-phosphodiester linkages.
• RNAi agents can be comprised of at least a sense strand (also referred to as a passenger strand) that includes a first sequence, and an antisense strand (also referred to as a guide strand) that includes a second sequence.
• the length of an RNAi agent sense and antisense strands can each be 16 to 49 nucleotides in length.
• the sense and antisense strands of an RNAi agent are independently 17 to 26 nucleotides in length.
• the sense and antisense strands are independently 19 to 26 nucleotides in length.
• the sense and antisense strands are independently 21 to 26 nucleotides in length.
• the sense and antisense strands are independently 21 to 24 nucleotides in length. In some embodiments, the sense and antisense strands are each 21 nucleotides in length. The sense and antisense strands can be either the same length or different lengths.
• the RNAi agents include an antisense strand sequence that is at least partially complementary to a sequence in the target gene, and upon delivery to a cell expressing the target, an RNAi agent may inhibit the expression of one or more target genes in vivo or in vitro. [0196] Oligonucleotide-based compounds generally, and RNAi agents specifically, may be comprised of modified nucleotides and/or one or more non-phosphodiester linkages.
• a‘"modified nucleotide’ is a nucleotide other than a ribonucleotide (2'-hydroxyl nucleotide). In some embodiments, at least 50% (e.g., at least 60%, at least 70%, at least 80%, at least 90%, at least 95%, at least 97%, at least 98%, at least 99%, or 100%) of the nucleotides are modified nucleotides.
• modified nucleotides include, but are not limited to, deoxynbonucleotides, nucleotide mimics, abasic nucleotides, 2'-modified nucleotides, 3' to 3' linkages (inverted) nucleotides, non-natural base-comprising nucleotides, bridged nucleotides, peptide nucleic acids, 2',3'-seco nucleotide mimics (unlocked nucleobase analogues, locked nucleotides, 3'-0-methoxy (2!
• intemucieoside linked nucleotides 2’-F-Arabino nucleotides, 5'-Me, 2’-fluoro nucleotide, morpholmo nucleotides, vinyl phosphonate deox ribonucleotides, vinyl phosphonate containing nucleotides, and cyclopropyl phosphonate containing nucleotides. 2'-modified nucleotides (i.e.
• nucleotide with a group other than a hydroxyl group at the 2' position of the five-membered sugar ring include, but are not limited to, 2'-0-methyl nucleotides, 2'-deoxy-2'-fTuoro nucleotides, 2'-deoxy nucleotides, 2'-methoxyethyl (2'-0-2- methoxylethyl) nucleotides, 2'-amino nucleotides, and 2'-alkyl nucleotides.
• one or more nucleotides of an oligonucleotide-based compound may be linked by non-standard linkages or backbones (i.e., modified internucleoside linkages or modified backbones).
• a modified internucleoside linkage may be a non-phosphate-containing covalent intemucieoside linkage.
• Modified intemucieoside linkages or backbones include, but are not limited to, 5'-phosphorothioate groups, chiral phosphorothioates, thiophosphates, phosphorodithioates, phosphotriesters, aminoalkyl- phosphotri esters, alkyl phosphonates (e.g., methyl phosphonates or 3'-alkylene phosphonates), chiral phosphonates, phosphinates, phosphoramidates (e.g., 3 '-amino phosphoramidate, aminoalkylphosphoramidates, or thionophosphoramidates), thionoalkyl-phosphonates, thionoalkylphosphotriesters, morpholino linkages, boranophosphat.es having normal 3'-5' linkages, 2'-5' linked analogs of boranophosphates, or boranophosphates having inverted polarity wherein the adjacent pairs of nucleoside units are linked 3
• the cargo molecule is an RNAi agent for inhibiting H1F-2 alpha ( EPAS1 ) gene expression.
• the cargo molecule may be an RNAi agent described in International Patent Application Publication No. WO 2016/196239 and WO 2014/134255, each of which is herein incorporated by reference in its entirety.
• RNAi agent sense strands and antisense strands may be synthesized and/or modified by methods known in the art.
• RNAi agents directed to the inhibition of HIF-2 alpha gene expression may be found, for example, in International Patent Application Publication No. WO 2016/196239, which is incorporated by reference herein m its entirety.
• the one or more cargo molecule(s) can include or consist of a PEG moiety that can acts as a pharmacokinetic (PK) enhancer or modulator.
• the one or more cargo molecules can include a PEG moiety having about 20- 900 ethylene oxide ⁇ ('l l ⁇ Ci l ⁇ ()) units (e.g., 20 to 850, 20 to 800, 20 to 750, 20 to 700, 20 to 650, 20 to 600, 20 to 550, 20 to 500, 20 to 450, 20 to 400, 20 to 350, 20 to 300, 20 to 250, 20 to 200, 20 to 150, 20 to 100, 20 to 75, 20 to 50, 100 to 850, 100 to 800, 100 to 750, 100 to 700, 100 to 650, 100 to 600, 100 to 550, 100 to 500, 100 to 450, 100 to 400, 100 to 350, 100 to 300,
• 300 to 750 300 to 700, 300 to 650, 300 to 600, 300 to 550, 300 to 500, 300 to 450, 300 to 400,
• the one or more cargo molecule(s) consist of a PEG moiety having approximately 455 ethylene oxide units (about 20 kilodalton (kDa) molecular weight). In some embodiments, a PEG moiety has a molecular weight of about 2 kilodaltons. In some embodiments, a PEG moiety has a molecular weight of about 20 kilodaltons. In some embodiments, a PEG moiety has a molecular weight of about 40 kilodaltons.
• the PEG moieties described herein may be linear or branched.
• the PEG moieties may be discrete (monodispersed) or non-discrete (polydispersed). PEG moieties for use as a PK enhancing cargo molecule may be purchased commercially.
• the one or more cargo molecule(s) include a PEG moiety that can act as a PK modulator or enhancer, as well as a different cargo molecule, such as a pharmaceutically active ingredient or compound.
• the described integrin ligands include salts or solvates thereof.
• Solvates of an integrin ligand is taken to mean adductions of inert solvent molecules onto the integrin ligand which form owing to their mutual attractive force.
• Solvates are, for example, mono- or dihydrates or addition compounds with alcohols, such as, for example, with methanol or ethanol.
• Free amino groups or free hydroxyl groups can be provided as substituents of integrin ligands with corresponding protecting groups.
• the anb3 integrin ligands also include, e.g., derivatives, i.e., integrin ligands modified with, for example, alkyl or acyl groups, sugars or oligopeptides, which are cleaved either in vitro or in an organism.
• an integrin ligand disclosed herein facilitates the delivery of a cargo molecule into the cytosol of a ceil presenting integrin anb3 and/or integrin anb5 on its surface, either through ligand-mediated endocytosis, pinocytosis, or by other means.
• an integrin ligand disclosed herein facilitates the delivery of a cargo molecule to the plasma membrane of a cell presenting integrin anb3 and/or integrin anb5.
• compositions that include, consist of, or consist essentially of, one or more of the integrin ligands disclosed herein.
• a“pharmaceutical composition” comprises a pharmacologically effective amount of an Active Pharmaceutical Ingredient (API), and optionally one or more pharmaceutically acceptable excipients.
• Pharmaceutically acceptable excipients are substances other than the Active Pharmaceutical ingredient (API, therapeutic product) that are intentionally included in the drug delivery system. Excipients do not exert or are not intended to exert a therapeutic effect at the intended dosage. Excipients may act to a) aid in processing of the drug delivery system during manufacture, b) protect, support or enhance stability, bioavailability or patient acceptability of the API, c) assist in product identification, and/or d) enhance any other attribute of the overall safety, effectiveness, of deliver ⁇ ' of the API during storage or use.
• Excipients include, but are not limited to: absorption enhancers, anti -adherents, anti foaming agents, anti-oxidants, binders, buffering agents, carriers, coating agents, colors, delivery enhancers, deliver ⁇ ' polymers, dextran, dextrose, diluents, disintegrants, emulsifiers, extenders, fillers, flavors, glidants, humectants, lubricants, oils, polymers, preservatives, saline, salts, solvents, sugars, suspending agents, sustained release matrices, sweeteners, thickening agents, tonicity agents, vehicles, water-repelling agents, and wetting agents
• compositions described herein can contain other additional components commonly found in pharmaceutical compositions.
• the additional component is a pharmaceutically-active material.
• Pharmaceutically -active materials include, but are not limited to: anti-pruritics, astringents, local anesthetics, or anti-inflammatory agents (e.g., antihistamine, diphenhydramine, etc.), small molecule drug, antibody, antibody fragment, aptamers, and/or vaccine.
• compositions may also contain preserving agents, solubilizing agents, stabilizing agents, wetting agents, emulsifiers, sweeteners, colorants, odorants, salts for the variation of osmotic pressure, buffers, coating agents, or antioxidants. They may also contain other agent with a known therapeutic benefit.
• compositions can be administered in a number of ways depending upon whether local or systemic treatment is desired and upon the area to be treated. Administration can be made by any way commonly known in the art, such as, but not limited to, topical (e.g., by a transdermal patch), pulmonary (e.g., by inhalation or insufflation of pow'ders or aerosols, including by nebulizer, intratracheal, intranasal), epidermal, transdermal, oral or parenteral.
• Parenteral administration includes, but is not limited to, intravenous, intraarterial, subcutaneous, intraperiioneal or intramuscular injection or infusion; subdermal (e.g., via an implanted device), intracranial, intraparenchyma!, intrathecal, and intraventricular, administration.
• the pharmaceutical compositions described herein are administered by intravenous injection or infusion or subcutaneous injection.
• the pharmaceutical compositions may be administered orally, for example in the form of tablets, coated tablets, dragees, hard or soft gelatine capsules, solutions, emulsions or suspensions. Administration can also be carried out rectally, for example using suppositories; locally or percutaneously, for example using ointments, creams, gels, or solutions; or parenterally, for example using injectable solutions.
• compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion.
• suitable carriers include physiological saline, bacteriostatic water, Cremophor ELTM (BASF, Parsippany, NJ) or phosphate buffered saline. It should be stable under the conditions of manufacture and storage and should be preserved against the contaminating action of microorganisms such as bacteria and fungi.
• the earner can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (for example, glycerol, propylene glycol, and liquid polyethylene glycol), and suitable mixtures thereof.
• the proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants.
• isotonic agents for example, sugars, polyalcohols such as mannitol, sorbitol, and sodium chloride in the composition.
• Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin.
• Sterile injectable solutions can be prepared by incorporating the active compound in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filter sterilization.
• dispersions are prepared by incorporating the active compound into a sterile vehicle which contains a basic dispersion medium and the required other ingredients from those enumerated above.
• methods of preparation include vacuum drying and freeze-drying which yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
• Formulations suitable for intra-articular administration can be in the form of a sterile aqueous preparation of any of the ligands described herein that can be in microcrystai!ine form, for example, in the form of an aqueous microcrystalline suspension.
• Liposomal formulations or biodegradable polymer systems can also be used to present any of the ligands described herein for both intra-articular and ophthalmic administration.
• the active compounds can be prepared with carriers that will protect the compound against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery' systems.
• a controlled release formulation including implants and microencapsulated delivery' systems.
• Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, poly glycolic acid, collagen, polyorthoesters, and poly lactic acid. Methods for preparation of such formulations will be apparent to those skilled in the art.
• Liposomal suspensions can also be used as pharmaceutically acceptable earners. These can be prepared according to methods known to those skilled in the art, for example, as described in U.S. Patent No. 4,522,81 1.
• a pharmaceutical composition can contain other additional components commonly found in pharmaceutical compositions.
• Such additional components include, but are not limited to: anti-praritics, astringents, local anesthetics, or anti-inflammatory agents (e.g., antihistamine, diphenh dramine, etc.).
• anti-praritics e.g., astringents
• local anesthetics e.g., astringents
• anti-inflammatory agents e.g., antihistamine, diphenh dramine, etc.
• “pharmacologically effective amount,” “therapeutically effective amount,” or simply“effective amount” refers to that amount of an the pharmaceutically active agent to produce a pharmacological, therapeutic or preventive result.
• Medicaments containing an anb3 integrin ligand are also an object of the present invention, as are processes for the manufacture of such medicaments, which processes comprise bringing one or more compounds containing a anb3 integrin ligand, and, if desired, one or more other substances with a known therapeutic benefit, into a pharmaceutically acceptable form.
• the described integrin ligands and pharmaceutical compositions comprising integrin ligands disclosed herein may be packaged or included in a kit, container, pack, or dispenser.
• the integrin ligands and pharmaceutical compositions comprising the integrin ligands may be packaged in pre-filled syringes or vials.
• an anb3 ligand is conjugated to one or more non-nucleotide groups including, but not limited to, a linking group, a pharmacokinetic (PK) enhancer (also referred to as a PK modulator), a pharmacodynamic (PD) modulator, a delivery polymer, or a delivery vehicle.
• PK pharmacokinetic
• PD pharmacodynamic
• the non-nucleotide group can enhance targeting, delivery, or attachment of the cargo molecule. Examples of scaffolds for targeting groups and linking groups are disclosed herein.
• the non-nucleotide group can be covalently linked to the 3' and/or 5' end of either the sense strand and/or the antisense strand.
• the RNAi agent contains a non-nucleotide group linked to the 3' and/or 5' end of the sense strand. In some embodiments, a non-nucleotide group is linked to the 5' end of an RNAi agent sense strand.
• An integrin ligand disclosed herein can be linked directly or indirectly to the cargo molecule via a linker/linking group. In some embodiments, an integrin ligand is linked to the cargo molecule via a labile, cleavable, or reversible bond or linker.
• a non-nucleotide group enhances the pharmacokinetic or biodistribution properties of an RNAi agent or conjugate to which it is attached to improve ceil- or tissue-specific distribution and cell-specific uptake of the RNAi agent or conjugate. In some embodiments, a non-nucleotide group enhances endocytosis of the RNAi agent. In some embodiments a non-nucleotide group enhances or modulates the pharmacodynamic properties of an RNAi agent or conjugate to which it is attached to improve cell- or tissue-specific distribution and cell-specific uptake of the RNAi agent or conjugate.
• Targeting groups or targeting moieties enhance the pharmacokinetic or biodistribution properties of a cargo molecule to which they are attached to improve cell-specific (including, in some cases, organ specific) distribution and cell-specific (or organ specific) uptake of the cargo molecule.
• a targeting group may comprise an anb3 ligand as described herein.
• a targeting group comprises a linker.
• a targeting group comprises a PK enhancer.
• an anb3 integrin ligand is linked to a cargo molecule using a linker, such as a PEG linker or one, two, or three abasic and/or ribitol (abasic ribose) residues, which in some instances can serve as linkers.
• a linker such as a PEG linker or one, two, or three abasic and/or ribitol (abasic ribose) residues, which in some instances can serve as linkers.
• Targeting groups may comprise one or more targeting ligands.
• a targeting group may comprise one to four integrin ligands disclosed herein.
• a targeting group is a tridentate targeting group and comprises three integrin ligands disclosed herein.
• Cargo molecules can be synthesized having a reactive group, such as an amino group (also referred to herein as an amine).
• a reactive group such as an amino group (also referred to herein as an amine).
• the reactive group may be linked at the 5 '-terminus and/or the 3’-terminus. The reactive group can be used subsequently to attach an anb3 integrin ligand using methods typical in the art.
• an RNAi agent is synthesized having an NH2-C6 group at the 5 '-terminus of the sense strand of the RN Ai agent.
• the terminal ammo group subsequently can be reacted to form a conjugate with, for example, a group that includes an integrin targeting ligand.
• an RNAi agent is synthesized having one or more a!kyne groups at the 5’-terminus of the sense strand of the RNAi agent.
• the terminal alkyne group(s) can subsequently be reacted to form a conjugate with, for example, a group that includes an anb3 integrin targeting ligand.
• a linking group is conjugated to the anb3 ligand.
• the linking group facilitates coval ent linkage of the anb3 ligand to a cargo molecule, PK enhancer, deliver ⁇ ' polymer, or deliver ⁇ ' vehicle.
• Examples of linking groups include, but are not limited to: Alk- SMPT-C6, Alk-SS-C6, DBCO-TEG, Me-Alk-SS-C6, and C6 ⁇ SS-Alk-Me, reactive groups such a primary amines and alkynes, alkyl groups, abasic residues/nucleotides, ammo acids, tri- alkyne functionalized groups, ribitol, and/or PEG groups.
• a linker or linking group is a connection between two atoms that links one chemical group (such as an RNAi agent) or segment of interest to another chemical group (such as an anb3 integrin ligand, PK enhancer, PD modulator, or delivery polymer) or segment of interest via one or more covalent bonds.
• a labile linkage contains a labile bond.
• a linkage can optionally include a spacer that increases the distance between the two joined atoms. A spacer may further add flexibility and/or length to the linkage.
• Spacers include, but are not be limited to, alkyl groups, alkenyl groups, alkynyl groups, aryl groups, aralkyl groups, aralkenyl groups, and aralkyny! groups; each of which can contain one or more heteroatoms, heterocycles, a mo acids, nucleotides, and saccharides. Spacer groups are well known in the art and the preceding list is not meant to limit the scope of the description.
• anb3 ligands are linked to cargo molecules without the use of an additional linker.
• the anb3 ligand is designed having a linker readily present to facilitate the linkage to a cargo molecule.
• the two or more RNAi agents when two or more RNAi agents are included in a composition, can be linked to their respective targeting groups using the same linkers. In some embodiments, when two or more RNAi agents are included in a composition, the two or more RNAi agents are linked to their respective targeting groups using different linkers.
• linking groups known in the art may he used. Examples of suitable linking groups are provided in PCT Application No. PCT/'US 19/18232, which is incorporated by reference herein in its entirety.
• the integrin targeting ligands described herein when bound or linked to an RNAi molecule, the integrin targeting ligand may be bound to internal nucleotides of the sense strand or the antisense strand. In some embodiments, up to 15 targeting ligands may be conjugated to internal nucleotides on the sense strand of an RNAi agent. In some embodiments, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 targeting ligands may be conjugated to internal nucleotides on the sense strand of a HIF-2 alpha RNAi agent.
• 1 to 5 e.g., 1, 2, 3, 4, or 5
• 3 to 4 targeting ligands are conjugated to internal nucleotides on the sense strand of an RNAi agent.
• placement of internal targeting ligands may impact the efficacy or potency of an RNAi agent.
• a targeting group is conjugated to the 5’ end of the sense strand, and at least 10 nucleotides are positioned between the tridentate targeting group located on the 5’ end of the sense strand and the next closest targeting ligand located on the sense strand.
• at least 5 nucleotides are positioned between the tridentate targeting group located on the 5’ end of the sense strand and the next closest targeting ligand located on the sense strand.
• RNAi agent In some embodiments where two or more targeting ligands are conjugated to internal nucleotides located on the sense strand of an RNAi agent, there is a space of at least one nucleotide that is not conjugated to a targeting ligand positioned between the two internal nucleotides that are conjugated to targeting ligands. In some embodiments where two or more targeting ligands are conjugated to the sense strand of an RNAi agent, at least two nucleotides that are not conjugated to a targeting ligand are positioned between two internal nucleotides that are conjugated to targeting ligands.
• targeting ligands are conjugated to the 2nd, 4th, and 6th nucleotides on the sense strand as numbered from 3’ to 5’, startin from the farthest 3’ nucleotide that forms a base pair with a nucleotide on the antisense strand.
• targeting ligands are conjugated to the 2nd, 4th, 6th, and 8th nucleotides (3’ -> 5’) from the 3' terminal nucleotide on the sense strand that forms a base pair with the antisense strand
• modified nucleotides for attaching internal targeting ligands are shown in Table B belows label B. Structures Representing Modified Nucleotides for Attaching Targeting Ligands.
• MHz CDCb 6 4 75 is. 1 H), 3.81 (s, 3 H), 3 78 (s, 3 H), 3.10 - 3.14 (m 2 H), 3.04 - 3.09 (m, 2 H), 2.68 (t, 2 H), 1.82-1.75 (m, 2 H), 1.44 (s, 9 H).
• a flame dried flask was charged with THF (190 mL) and DIPEA (9.07 g, 89.7 mmol), cooled to -20 °C, and then charged with n-BuLi (2.5M, 34.2 mL, 85.6 mmol) via cannula. The solution was stirred for 10 min at -20 °C then cooled to -78 °C. Compound 8 (8 mL, 81.5 mmol) was added dropwise with vigorous stirring. After addition, stirred for 30 mm at -78 °C. Next, ClTi(iPrO)3 (44.6g, 0.171 mol) as solution in THF (40 mL) was added via addition funnel over 10 minutes.
• the resulting solution was stirred for 30 min at 0°C in a water/ice bath.
• the resulting solution was allowed to react, with stirring, for an additional 2 h while the temperature was maintained at 50°C in an oil bath.
• the solids were filtered out.
• Tire resulting mixture was concentrated.
• the reaction w ? as then quenched by the addition of 2 L of water and extracted with 2x2 L of ethyl acetate.
• the combined organic layers were dried over anhydrous sodium sulfate and concentrated under vacuum.
• the resulting solution was stirred for 1 h at 50°C in an oil bath. The reaction was then quenched by the addition of 1 L of water. NaHCCh (aq.) was employed to adjust the pH to 8. The resulting solution was extracted with 2x1 L of ethyl acetate dried over anhydrous sodium sulfate and concentrated.
• the reaction mixture was acidified to a pH of 7 with 6 N aqueous HC1 and concentrated under reduced pressure.
• Compound 118a was further purified by reverse phase HPLC (Thermo ScientificTM AquasilTM Cl 8, 250 x 21.2 mm, 5 mih, 20 mL/min, 0.1% TFA m w3 ⁇ 4ter/ACN, gradient elution), yielding 13 mg of compound 118a (Structure 28c).
• Compound 119a w3 ⁇ 4s purified under the same conditions, yielding 16 mg of compound 119a (Structure 31c).
• the regioisomers, compounds 1 18b and 119b, were separated by CombiFlash eluting a gradient of 0-5% methanol in DCM containing 0.5% acetic acid.
• Compound 118b was further purified by reverse phase HPLC (Thermo ScientificTM AquasilTM 08, 250 x 21.2 mm, 5 mih, 20 mL/min, 0.1% TFA in water/ ACN, gradient elution), yielding 14 mg of compound 118b (Structure 29c).
• Compound 119b was purified under the same conditions, yielding 18 mg of compound 119b (Structure 30c).
• the mixture was aged at 50 °C for 1 h, cooled to ambient temperature, then heated to 50 °C and TMEDA (14.1 mL, 11.0 g, 94.3 mmol) was added.
• the mixture was aged at 50 °C for 1 h, cooled to ambient temperature, and then used with compound 156.
• the integrin targeting ligands can be conjugated to one or more RN Ai agents useful for inhibiting the expression of one or more targeted genes in cells that express integnns.
• the integrin targeting ligands disclosed herein facilitate the delivery' of the RNAi agents to the targeted cells and/or tissues.
• Example 1, above described the synthesis of certain integrin targeting ligands disclosed herein. The following describes the general procedures for the syntheses of certain integrin targeting ligand-RNAi agent conjugates that are illustrated in the non-limiting Examples set forth herein.
• RNAi agents can be synthesized using methods generally known in the art. For the synthesis of the RNAi agents illustrated m the Examples set forth herein, the sense and antisense strands of the RNAi agents were synthesized according to phosphoramidite technology' on solid phase used in oligonucleotide synthesis. Depending on the scale, a MerMade96E® (Bioautomation), a MerMadel2® (Bioautomation), or an OP Pilot 100 (GE Healthcare) was used. Syntheses were performed on a solid support made of controlled pore glass (CPG, 500 A or 6Q0A, obtained from Prime Synthesis, Aston, PA, USA).
• CPG controlled pore glass
• RNA and 2'-modified RNA phosphorami dries were purchased from Thermo Fisher Scientific (Milwaukee, WI, USA). Specifically, the following 2'-0-methyl phosphoramidites were used: (5'-0-dimethoxytrityl-N 6 -(benzoyl)-2'-0-methyl-adenosine-3'-0-(2-cyanoethyl- N,N-diisopropylamino) phosphoramidite, 5'-0-dimethoxy-trityl-N 4 -(ace1yl)-2'-0-methyl- cytidine-3'-0-(2-cyanoethyl-N,N-diisopropyl-amino) phosphoramidite, (5'-0- dimethoxytrityl-N 2 -(isobutyryl)-2'-0-methyl-guanosine-3'-0-(2-cyanoethyl-N,N- diisopropylamino)
• phosphoramidites were purchased from Glen Research (Virginia).
• the inverted abasic (3'-0- dimethoxytrityl-2'-deoxyribose-5'-0-(2-cyanoethyl-N,N-diisopropylamino) phosphoramidites were purchased from ChemGenes (Wilmington, MA, USA).
• the mtegrin targeting ligands disclosed herein are conjugated to the RNAi agents by linking the components to a scaffold that includes a tri-alkyne group, or to a modified nucleotide comprising a propargyl group as shown in Table B, above.
• the tri-alkyne group is added by using a tri-a!kyne-contaimng phosphoramidite, which can be added at the 5’ terminal end of the sense strand of an RNAi agent.
• tri-alkyne-containing phosphoramidites were dissolved in anhydrous dichloromethane or anhydrous acetonitrile (50 mM), while all other ami dries were dissolved in anhydrous acetonitrile (50 mM). and molecular sieves (3A) were added.
• BTT 250 mM in acetonitrile
• Ethylthio-lH-tetrazole Ethylthio-lH-tetrazole
• tri-alkyne-containing compounds can be introduced post-synthetically (see, for example, section E, below).
• the 5’ terminal nucleotide of the sense strand w3 ⁇ 4s functionalized with a nucleotide that included a primary amine at the 5" end to facilitate attachment to the tri-alkyne-containing scaffold.
• TFA aminolink phosphoramidite was dissolved in anhydrous acetonitrile (50 mM) and molecular sieves (3A) were added.
• 3-Benzylthio-lH-tetrazole BIT, 250 mM in acetonitrile
• Ethyithio-lH-tetrazole ETT, 250 mM in acetonitrile was used as activator solution. Coupling times were 10 min (RNA), 90 sec (2' O-Me), and 60 sec (2' F).
• a, c, g, and u represent 2'-0-methyl adenosine, cytidine, guanosine, or uridine, respectively;
• Afi Cf, Gf, and Uf represent 2'-fiuoro adenosine, cytidine, guanosine, or uridine, respectively;
• aAlk, cAlk, gA!k, and uAlk represent 2’-0-propargyl adenosine, cytidine, guanosine, or uridine, respectively;
• (invAb) represents an inverted abasic residue (inverted abasic deoxyribonudeotide);
• s represents a phosphorothioate
• (C6-S ⁇ Mal-L) represents: , wherein L is a PEG chain, or ethyl, as indicated in the examples below.
• L is a PEG chain, or ethyl, as indicated in the examples below.
• B Cleavage and deprotection of support bound oligomer. After finalization of the solid phase synthesis the dried sohd support was treated with a 1: 1 volume solution of 40 wt. % methy!amine in water and 28% to 31% ammonium hydroxide solution (Aldrich) for 1.5 hours at 30 °C The solution was evaporated and the solid residue was reconstituted m water (see below).
• RNAi agents w3 ⁇ 4re lyophilized and stored at -15 to -25 °C.
• Duplex concentration was determined by measuring the solution absorbance on a UV-Vis spectrometer in l x PBS. The solution absorbance at 260 nm was then multiplied by a conversion factor and the dilution factor to determine the duplex concentration.
• Tire conversion factor used was either 0.037 mg/(mL-cm), or, alternatively for some experiments, a conversion factor was calculated from an experimentally determined extinction coefficient.
• Tri-alkyne scaffold Either prior to or after annealing, the 5' or 3' amine functionalized sense strand of an RNAi agent can be conj ugated to a tri-alkyne scaffold.
• Example tri-alkyne scaffold structures that can be used in forming the constructs disclosed herein include the following:
• 5' or 3' tridentate alkyne functionalized sense strand is conjugated to the integrin targeting ligands.
• the following example describes the conjugation of anb3/5 integrin targeting ligands to the annealed duplex: Stock solutions of 0.5M Tris(3-hydroxypropyltriazolylmethyl)amine (THPTA), 0.5M of Cu(ll) sulfate pentahydrate (Cu(II)S04 ⁇ 5 H2O) and 2M solution of sodium ascorbate were prepared in deionized water. A 75 mg/mL solution in DMSO of integrin targeting ligand was made.
• a c steine linker can be used to facilitate conjugation of the integrin targeting ligands to the RNAi agent. Either prior to or after annealing, the 5' or 3' tridentate alkyne-Cys(Sibu)-PEG2 functionalized sense strand is functionalized with a maleimide-containing moiety, or can be reduced and left as the free thiol, as shown in the following structure:
• Tri ⁇ alkyne-Cys(Stbu)-PEG2-duplex (35 mg) was dissolved in 500 pL deionized H?.0. HEPES buffer (1M, pH 8.5, 82 pL), was added to the reaction, and the solution was vortexed. A solution of 1 M Dithiothreitol (DTT, 100 eq, 236 pL) was added and the solution was placed on a vortex shaker for 3 h.
• DTT Dithiothreitol
• the conjugate w3 ⁇ 4s precipitated three times in a solvent system of lx phosphate buffered saline/acetonitrile (1 :14 ratio).
• the precipitated pellet was reconstituted in 0.5 mL of 0.1 M HEPES, pH 6.5, and N-ethyl maleimide (3 mg, 10 eq) was added to the solution, and placed on a vortex mixer for -15 min.
• the conjugate was precipitated three times m a solvent system of lx phosphate buffered sa!me/acetonitri!e (1 : 14 ratio), desalted, and dried.
• the integrin targeting ligands of the present disclosure have increased stability, both with respect to serum stability in vivo and chemical stability ex vivo , compared to such peptide-based RGD-mimetic ligands.
• a pCR3.1 expression vector expressing the reporter gene secreted alkaline phosphatase (SEAP) under the CMV promoter was prepared by directional cloning of the SEAP coding sequence PCR amplified from Clontech’s pSEAP2-basic vector. Convenient restriction sites were added onto primers used to amplify the SEAP coding sequence for cloning into the pCR3. l vector (Invitrogen).
• the resultant construct pCR3-SEAP was used to create a SEAP- expressmg A498 ccRCC ceil line. Briefly, pCR3-SEAP plasmid was transfected into A498 ccRCC cells by electroporation following manufacturer’s recommendation. Stable transfectants w3 ⁇ 4re selected by G418 resistance. Selected A498-SEAP clones were evaluated for SEAP expression and integration stability.
• mice Female athymic nude mice were anesthetized with ⁇ 3% isoflourane and placed in the right lateral decubitus position. A small, 0.5-icm, longitudinally abdominal incision in the left flank was made. Using a moist cotton swab, the left kidney was lifted out of the peritoneum and gently stabilized. Just before injection, a 1.0 ml syringe was filled with the cell/Matngel mixture and a 27 gauge needle catheter was attached to the syringe tip. The filled syringe was then attached to a syringe pump (Harvard Apparatus, model PHD2000) and primed to remove air.
• a syringe pump Harmonic Apparatus, model PHD2000
• mice were euthanized the identified day after injection and total RNA was isolated from kidney tumor using Trizol reagent following manufacturer’s recommendation. Relative HiF2a RNA levels were determined by RT-qPCR as described below' and compared to mice treated with delivery' buffer (isotonic glucose) only.
• RNA w'as isolated from tissue samples homogenized in TriReagent (Molecular Research Center, Cincinnati, OH) following the manufacturer's protocol. Approximately 500 ng RNA was reverse-transcribed using the High Capacity' cDNA Reverse Transcription Kit (Life Technologies).
• human Hif2tx (EPAS ! ) expression
• pre-man ufactured TaqMan gene expression assays for human Hif2a (Catalog # 4331182) and CycA (PPIA) Catalog #: 4326316E) were used in biplex reactions in triplicate using TaqMan Gene Expression Master Mix (Life Technologies) or Veri Quest Probe Master Mix (Affymetrix). Quantitative PCR w3 ⁇ 4s performed by using a 7500 Fast or StepOnePlus Real-Time PCR system (Life Technologies). The AACT method was used to calculate relative gene expression.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase m accordance with general procedures known in the art and commonly used in oligonucleotide synthesis, as set forth in Example 2 herein.
• EPAS1 is a member of the HIF (hypoxia inducible factor) gene family and encodes half of a transcription factor involved in the induction of genes regulated by oxygen, and winch is induced as oxygen levels fall (a condition known as hypoxia), and is known to be frequently overexpressed in clear cell renal carcinoma cells.
• the Hif2a RNAi agents were designed to be capable of degrading or inhibiting translation of messenger R A (mRNA) transcripts of HifiZoi in a sequence specific manner, thereby inhibiting expression of an EPAS1 gene.
• the Hif2cx RNAi agents wnre comprised of modified nucleotides and more than one non-phosphodiester linkage.
• kidney tumor bearing mice see Example 4
• RNAi agents in Example 5 were synthesized having nucleotide sequences directed to target the human Hi£2a gene, and included a functionalized amine reactive group (NH2-C6) at the 5' terminal end of the sense strand to facilitate conjugation to the mtegrin targeting ligands (or, for Group 3, to the RGD-mirnetic peptide-hased ligand).
• NH2-C6 functionalized amine reactive group
• the modified sequences of the RNAi agents are shown in Example 2, above.
• a single integrin targeting ligand (referred to herein as a“monodentate” ligand) was conjugated to the RNAi agent via a DBCO-PEG5-NHS ester linker (BroadPharm), which was conjugated to the terminal primary amine on the 5' terminal end of the sense strand.
• the respective integrin targeting ligands were synthesized having an azide reactive group (see, e.g., Example 1), which was then conjugated to the DBCO component of the linker.
• RNAi agents were synthesized having a PK modulator referred to as“20 kDAPEG moiety” or“40 kDA PEG moiety” having the structure: wherein « indicates the point of attachment to the RNAi agent at the C6-S- group as indicated in AD04546 ( see Example 2), and PEG indicates a 20 kDa or 40 kDa PEG chain.
• the PK modulator was conjugated to the 3’ end of the sense strand by reducing the C6-SS-C6 group, as shown in Table A, which then underwent Michael addition with the
• a 40 kDa or 20 kDa PEG moiety was attached to serve as a PK enhancer to increase circulation time of the drug product-conjugate.
• Relative Human HIF2a mR A expression was then quantitated by probe-based quantitative PCR (RT-qPCR), normalized to human CyclophiJin A (PPIA) expression and expressed as fraction of vehicle control group (isotonic glucose) (geometric mean, +/- 95% confidence interval), as explained in Example 4.
• RT-qPCR probe-based quantitative PCR
• PPIA CyclophiJin A
• each of the Hif2a RNAi agents showed a reduction in RNA expression in mice compared to control.
• the inclusion of a 40 kDa PEG moiety as a PK enhancer generally improved inhibition of expression of the targeted gene.
• a comparison of Groups 3, 4, and 5 showed that the integrin targeting ligand of Structure la described herein was comparable to an RGD mimetic peptide-based ligand that is known to have affinity to anb3, and the ligand of Structure 2a showed a nearly 10% improvement in knockdown over the RGD mimetic ligand.
• Group 3 (RGD mimetic) had approximately 60% knockdown (0.400);
• Group 4 (Structure la) had approximately 61% knockdown (0.390); and
• Group 5 (Structure 2a) had approximately 69% knockdown (0.308).
• the data also showed ligand dependency, as the inclusion of an integrin targeting ligand disclosed herein showed improvement as compared to the same construct without ligand.
• Group 6 tridentate integrin targeting ligand Structure 2a
• Group 2 no integrin targeting ligand
• Group 6 showed a small improvement over Group 5, indicating a slight preference for a multi-dentate ligand over a monodentate ligand; however, both forms were active and delivered the RNAi agent to the kidney (as shown by inhibition of gene expression by the RNAi agent).
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and w3 ⁇ 4re designed to target Hif2a (EPASl).
• kidney tumor bearing mice (see Example 4) were dosed via tail vein injection according to the following dosing Groups:
• RNAi agents were synthesized having nucleotide sequences directed to target the human Hi£2a gene, and included a functionalized amine reactive group (NH2-C6) at the 5' terminal end of the sense strand to facilitate conjugation to the integnn targeting ligands (or, for groups 2, 3 and 4, to the RGD mimetic peptide).
• a single integrin targeting ligand (“monodentate” ligand) was conjugated to the RNAi agent via the following DBCO-PEGs-NHS ester:
• RT-qPCR probe-based quantitative PCR
• PPIA Cyclophilin A
• each of the Hif2a RNAi agents showed a reduction mRNA expression compared to control.
• Groups 5 and 6, which contained the integrin targeting ligand of Structure 2a disclosed herein showed improvement knockdown of Hif2a mRNA compared to the RGD-mimetic peptide-based ligands of Groups 2 and 3. (e.g., compare Group 6 (approximately 73% knockdown at 15 mg/kg RNAi agent (0.271)) with Group 3 (approximately 67% knockdown at 15 mg/kg RNAi agent (0.330)).
• Example 7 In Vivo Administration of Integrin Targeting ligands Conjugated to RNAi Agents Targeting HIF-2 alpha in Kidney Tnmor Bearing Mice.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a ( EPAS1 ).
• kidney tumor bearing mice (see Example 4) wore dosed via tail vein injection according to the following dosing Groups:
• RNAi agents were synthesized having nucleotide sequences directed to target the human Hi£2a gene and included a functionalized amine reactive group (NHz-Ce) at the 5' terminal end of the sense strand to facilitate conjugation to the integrin targeting ligands.
• NHz-Ce functionalized amine reactive group
• an alkyne-PEG4-NHS ester was used to link the monodentate integrin targeting ligand to the 5' amine on the sense strand.
• Groups 4 through 7 used integrin targeting ligands with varied PEG lengths.
• each of the Hif2a RNAi agents showed a reduction in mRNA expression in mice compared to control.
• Group 2 which included a dose of 7.5 mg/kg RN Ai agent conjugated to the tridentate integrin targeting ligand of Structure 2a (which includes a PEG* group) showed approximately 64% knockdown of Hif2a (0.361).
• the constructs that increased the length of the PEG group to up to PEG36 e.g., Groups 6 and 7 all showed knockdown, no benefit was seen as compared to the PEG4 group that is present m Structure 2a.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology ' on solid phase in accordance with general procedures known in the art and commonly used m oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a ( EPASl ).
• kidney tumor bearing mice (see Example 4) were dosed via tail vein injection according to the following dosing Groups:
• RNAi agents were synthesized having nucleotide sequences directed to target the human Hif2a gene, and included a functionalized amine reactive group (NTD-Ce) at the 5 ' terminal end of the sense strand to facilitate conjugation to the integrin targeting ligands.
• NTD-Ce functionalized amine reactive group
• Each of the Groups had tridentate integrin ligands of Structure 2a, as depicted by the following structure:
• Relative Human HIF2a mRNA expression was then quantitated by probe-based quantitative PCR (RT-qPCR), normalized to human Cyclophdin A (PPIA) expression and expressed as fraction of vehicle control group (isotonic glucose) (geometric mean, +/- 95% confidence interval), as explained in Example 4.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a (EPASl).
• kidney tumor bearing mice (see Example 4) w3 ⁇ 4re dosed via tail vein injection according to the following dosing Groups.
• mice in Groups 1 and 2 were euthanized on day 5 after injection; mice in Group 3 were euthanized on day 8 after injection; mice in Group 4 were euthanized on day 15 after injection; and mice in Groups 1 A and 5 were euthanized on day 22 after injection.
• RNAi-agent-mtegrin targeting ligand containing groups i.e., Groups 2, 3, 4, and 5
• Total RNA was isolated from kidney tumor according to the procedures set forth in Example 4.
• Relative Human HIF2a mRNA expression was then quantitated by probe-based quantitative PCR (RT-qPCR), normalized to human Cyclophilin A (PP1A) expression and expressed as fraction of vehicle control group (isotonic glucose) (geometric mean, +/- 95% confidence interval), as explained in Example 4.
• Example 1Q In Vivo Administration of Integrin Targeting Ligands Conjugated to RNAi Agents Targeting HIF-2 alpha in Kidney Tumor Bearing Mice.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a (EPASl).
• kidney tumor bearing mice (see Example 4) w3 ⁇ 4re dosed via tail vein injection according to the following dosing Groups:
• RNAi agents were synthesized having nucleotide sequences directed to target the human Hif2a gene, and included a functionalized amine reactive group (NH2-C6) at the 5' terminal end of the sense strand to facilitate conjugation to the integrin targeting ligands.
• NH2-C6 a functionalized amine reactive group
• Relative Human HIF2a mR A expression was then quantitated by probe-based quantitative PCR (RT-qPCR), normalized to human Cyclophilin A (PPIA) expression and expressed as fraction of vehicle control group (isotonic glucose) (geometric mean, +/- 95% confidence interval), as explained in Example 4.
• RT-qPCR probe-based quantitative PCR
• PPIA Cyclophilin A
• each of the Hif2a RNAi agent-integrin targeting ligand conjugates showed a reduction in mRNA expression in mice compared to control.
• Group 2 which included a dose of 7.5 mg/kg RNAi agent conjugated to the tridentate integrin targeting ligand of Structure 2a, showed approximately 65% knockdown of Hif2a mRNA (0.351).
• Example 11 In Vivo Administration of Integrin Targeting Ligands conjugated to RNAi Agents Targeting 11IF-2 alpha in anb3 KO A498 Kidney Tumor Bearing Mice.
• ccRCC Clear cell renal cell carcinoma
• A498 tumor cells express both anb3 and anb5 integnns, with anb3 expression about 4-fold higher than anb5 by flow-cytometry analysis.
• anb3 knockout (KO) A498 cells were synthesized via gene editing technology. Knockout of integrin anb3 was confirmed by genomic sequencing and imrnunohistochemistry staining of anb3, which showed that staining was negative in the anb3 KO A498 cells.
• Kidney tumor bearing mice with A498 WT (with both anb3 and anb5) and anb3 KO A498 cells were prepared as described above in Example 4.
• RT-qPCR probe-based quantitative PCR
• PPIA Cyclophilin A
• the HiGa RNAi agent-in tegrin ligand conjugates showed a reduction in HiGa mRNA expression in A498 WT (wild type) tumors compared control (about 71% (0.295) knockdown).
• the reduction in HiGa mRNA expression was less efficient in A498 anb3 KO tumors; however, the reduction was nevertheless substantial at 38% (0.621) knockdown. This shows that both integrin anbq and integrin anb5 contribute to the RNAi agent delivery.
• Example 12 In Vivo Administration of Integrin Targeting Ligands Conjugated to RNAi Agents Targeting MIF-2 alpha in Kidney Tumor Bearing Mice.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a ( EPAS1 ).
• kidney tumor bearing mice (see Example 4) were dosed via tail vein injection according to the following dosing Groups:
• RNAi agents were synthesized having nucleotide sequences directed to target the human Hif2tx gene, and included a functionalized amine reactive group (Ni l ⁇ ( ' ..) at the 5 ! terminal end of the sense strand to facilitate conjugation to the integrin targeting ligands.
• a functionalized amine reactive group Ni l ⁇ ( ' ..) at the 5 ! terminal end of the sense strand to facilitate conjugation to the integrin targeting ligands.
• RNAi agents were synthesized having a PD modulator referred to as“Mal-C 18- diacid moiety” having the structure:
• each of the Hif2a RNAi agent-integrin targeting ligand conjugates showed a reduction in mRNA expression compared to control.
• Example 13 In Vivo Administration of Integrin Targeting Ligands Conjugated to RNAi Agents Targeting HIF-2 alpha in Kidney Tumor Bearing Mice.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a (EPASl).
• kidney tumor bearing mice (see Example 4) were dosed via tail vein injection according to the following dosing Groups:
• aA!k, gAlk, and uAlk in the modified sense strand sequence which when viewed 5’ 3’ on the sense strand sequence are at nucleotides 14, 16, 18, and 20 on the sense strand.
• Relative Human HIF2a mRNA expression was then quantitated by probe-based quantitative PCR (RT-qPCR), normalized to human Cyclophilin A (RR ⁇ A) expression and expressed as fraction of vehicle control group (isotonic glucose) (geometric mean, +/- 95% confidence interval), as explained in Example 4.
• each of the Hif2a RNAi agent-integrin targeting ligand conjugates showed a reduction in mRNA expression in mice compared to control, with the constructs that included the integnn targeting ligands of Structure 2a and Structure 32a showing the greatest inhibitory activity.
• Example 14 In Vivo Administration of Integrin Targeting Ligands Conjugated to RNAi Agents Targeting HIF-2 alpha in Kidney Tnmor Bearing Mice.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a (EPAS1).
• kidney tumor bearing mice (see Example 4) w3 ⁇ 4re dosed via tail vein injection according to the following dosing Groups:
• aAlk, gAlk, and uAlk in the modified sense strand sequence which when viewed 5 3 on the sense strand sequence are at nucleotides 14, 16, 18, and 20 on the sense strand.
• RT-qPCR probe-based quantitative PCR
• PPIA Cyclophilin A
• Example IS In Vivo Administration of Integrin Targeting Ligands Conjugated to RNAi Agents Targeting HIF-2 alpha in Kidney Tumor Bearing Mice.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technology on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hif2a (EPASl).
• kidney tumor bearing mice (see Example 4) were dosed via tail vein injection according to the following dosing Groups:
• the avb3 targeting ligands are linked to the 2’-G-propargyl nucleotides (represented by aA!k, gAlk, and uAlk in the modified sense strand sequence), which when viewed 5’ -> 3’ on the sense strand sequence are at nucleotides 14, 16, 18, and 20 on the sense strand.
• Example 16 In Vivo Administration of Integrin Targeting Ligands Conjugated to RNAi Agents Targeting HIF-2 alpha in Kidney Tumor Bearing Mice.
• RNAi agents that included a sense strand and an antisense strand were synthesized according to phosphoramidite technolog ⁇ ' on solid phase in accordance with general procedures known in the art and commonly used in oligonucleotide synthesis as set forth in Example 2 herein.
• the RNAi agents had the respective modified nucleotide sequences set forth in Example 2 herein and were designed to target Hi£2 ⁇ x ( EPAS1 ).
• kidney tumor bearing mice (see Example 4) were dosed via tail vein injection according to the following dosing Groups:
• aA!k, gAlk, and uAlk in the modified sense strand sequence which when viewed 5’ 3’ on the sense strand sequence are at nucleotides 14, 16, 18, and 20 on the sense strand.
• RT-qPCR probe-based quantitative PCR
• PPIA Cyclophilin A
• each of the Hi£2 ⁇ x RNAi agent-integrin targeting ligand conjugates showed a reduction in mllNA expression in mice compared to control.

Landscapes

• Health & Medical Sciences (AREA)
• Chemical & Material Sciences (AREA)
• Life Sciences & Earth Sciences (AREA)
• Organic Chemistry (AREA)
• General Health & Medical Sciences (AREA)
• Medicinal Chemistry (AREA)
• Engineering & Computer Science (AREA)
• Genetics & Genomics (AREA)
• Veterinary Medicine (AREA)
• Pharmacology & Pharmacy (AREA)
• Animal Behavior & Ethology (AREA)
• Public Health (AREA)
• Molecular Biology (AREA)
• Epidemiology (AREA)
• Bioinformatics & Cheminformatics (AREA)
• Zoology (AREA)
• Biotechnology (AREA)
• Biomedical Technology (AREA)
• Biophysics (AREA)
• Biochemistry (AREA)
• General Engineering & Computer Science (AREA)
• Wood Science & Technology (AREA)
• Toxicology (AREA)
• Immunology (AREA)
• Gastroenterology & Hepatology (AREA)
• Proteomics, Peptides & Aminoacids (AREA)
• Cell Biology (AREA)
• General Chemical & Material Sciences (AREA)
• Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
• Chemical Kinetics & Catalysis (AREA)
• Physics & Mathematics (AREA)
• Plant Pathology (AREA)
• Microbiology (AREA)
• Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)
• Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
• Medicinal Preparation (AREA)
• Peptides Or Proteins (AREA)
• Micro-Organisms Or Cultivation Processes Thereof (AREA)
• Acyclic And Carbocyclic Compounds In Medicinal Compositions (AREA)

Priority Applications (23)

Applications Claiming Priority (4)

Publications (1)

Family

ID=68294255

Family Applications (1)

Country Status (20)

Cited By (1)

Families Citing this family (4)

Citations (9)

Family Cites Families (5)

• 2019
  • 2019-04-26 IL IL309955A patent/IL309955A/en unknown
  • 2019-04-26 FI FIEP19794009.1T patent/FI3784269T3/fi active
  • 2019-04-26 MX MX2020011290A patent/MX2020011290A/es unknown
  • 2019-04-26 BR BR112020021949-5A patent/BR112020021949A2/pt unknown
  • 2019-04-26 EP EP24179088.0A patent/EP4435000A3/en active Pending
  • 2019-04-26 US US17/050,042 patent/US20210093725A1/en active Pending
  • 2019-04-26 HR HRP20240907TT patent/HRP20240907T1/hr unknown
  • 2019-04-26 SI SI201930780T patent/SI3784269T1/sl unknown
  • 2019-04-26 AU AU2019260738A patent/AU2019260738B2/en active Active
  • 2019-04-26 EP EP19794009.1A patent/EP3784269B1/en active Active
  • 2019-04-26 DK DK19794009.1T patent/DK3784269T3/da active
  • 2019-04-26 ES ES19794009T patent/ES2983950T3/es active Active
  • 2019-04-26 WO PCT/US2019/029393 patent/WO2019210200A1/en not_active Ceased
  • 2019-04-26 CA CA3097656A patent/CA3097656A1/en active Pending
  • 2019-04-26 JP JP2020560257A patent/JP7704529B2/ja active Active
  • 2019-04-26 SG SG11202009734VA patent/SG11202009734VA/en unknown
  • 2019-04-26 JO JOP/2020/0266A patent/JOP20200266A1/ar unknown
  • 2019-04-26 IL IL278304A patent/IL278304B2/en unknown
  • 2019-04-26 CN CN201980028704.0A patent/CN112074290B/zh active Active
  • 2019-04-26 KR KR1020207033772A patent/KR102787533B1/ko active Active
  • 2019-04-26 CN CN202411099363.5A patent/CN118994152A/zh active Pending
  • 2019-04-29 TW TW108114935A patent/TW202014206A/zh unknown
• 2020
  • 2020-10-27 SA SA520420426A patent/SA520420426B1/ar unknown
• 2024
  • 2024-12-27 JP JP2024232254A patent/JP2025060958A/ja active Pending

Patent Citations (9)

Non-Patent Citations (9)

Also Published As

Similar Documents

Legal Events