WO2017180160A1 - Methods to reduce evaporation during elevated temperature - Google Patents

Methods to reduce evaporation during elevated temperature Download PDF

Info

Publication number
WO2017180160A1
WO2017180160A1 PCT/US2016/027945 US2016027945W WO2017180160A1 WO 2017180160 A1 WO2017180160 A1 WO 2017180160A1 US 2016027945 W US2016027945 W US 2016027945W WO 2017180160 A1 WO2017180160 A1 WO 2017180160A1
Authority
WO
WIPO (PCT)
Prior art keywords
reagent
moieties
moiety
evaporation
reducing agent
Prior art date
Application number
PCT/US2016/027945
Other languages
French (fr)
Inventor
Douglas T. Yamanishi
Clifford Hom
Amit D. Shah
Original Assignee
Sakura Finetek U.S.A., Inc.
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Sakura Finetek U.S.A., Inc. filed Critical Sakura Finetek U.S.A., Inc.
Priority to DK16720619.2T priority Critical patent/DK3289098T3/en
Priority to BR112017022973A priority patent/BR112017022973A2/en
Priority to CA2983930A priority patent/CA2983930C/en
Priority to AU2016402370A priority patent/AU2016402370B2/en
Priority to JP2017554865A priority patent/JP6550471B2/en
Priority to CN201680023650.5A priority patent/CN107614702A/en
Priority to EP16720619.2A priority patent/EP3289098B1/en
Priority to PCT/US2016/027945 priority patent/WO2017180160A1/en
Publication of WO2017180160A1 publication Critical patent/WO2017180160A1/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813Hybridisation assays
    • C12Q1/6841In situ hybridisation

Definitions

  • Immunohistochemical assays and assay techniques based on in situ hybridization are widely used in medical diagnostics such as to diagnose abnormal cells such as those found in cancerous tumors or to diagnose another disease.
  • Many assays involve the addition of heat to the sample, such as to a sample in a reagent on a slide. Assay steps at elevated temperatures can cause substantial evaporation of assay reagents. When small volumes are used, sample denaturation, hybridization, wash and aging steps and the resulting assay can be compromised by evaporation.
  • a reagent and a method of use of a reagent including an evaporation reducing agent in an aqueous solution operable to reduce evaporation of the reagent in processing of a tissue or cellular sample is disclosed.
  • Representative processing for which a reagent as described finds use include, but are not limited to, dewaxing, cell conditioning/antigen retrieval/cell aging, peroxide/phosphatase block, probe denature, probe hybridization, washing, linker hybridization, antibody incubation, probe detection, chromogen precipitation and counterstain involving an elevated temperature step (e.g. an elevated temperature step in an in situ hybridization procedure).
  • the solution can representatively be used in
  • a suitable reagent may include other components such as a detergent/surfactant which helps with solution spreading in a hybridization solution reagent.
  • a suitable amount of an evaporation reducing agent in a reagent operable for tissue or cellular processing is an amount that will limit a loss of the reagent due to evaporation to 20 percent or less under industry acceptable reagent processing conditions such as subjecting a hybridization solution to an elevated temperature between 25°C and 50°C for 10 minutes to 24 hours (e.g., a hybridization or incubation process) or to an elevated temperature of between 60°C and 100°C for two to ninety minutes (e.g., a denaturing or antigen retrieval process).
  • a suitable amount of an evaporation reducing agent is in the range of 11 percent to 60 percent by volume of a regent composition (e.g., solution).
  • a reagent includes an effective evaporation reducing amount of an evaporation reducing agent comprising the formula of General Formula I:
  • R is an alkyl, an alkenyl, an alkynyl or an aromatic moiety of one or more carbon atoms (e.g., one to six carbon atoms in one embodiment and one to four carbon atoms in another embodiment where it is appreciated that if R is a moiety of one carbon, R is an alkyl) that may be substituted with oxygen atom, sulfur atom and/or or nitrogen atom (e.g., -OH, - SH, or - H 2 is substituted for a hydrogen atom of one or more hydrocarbons defining the alkyl, alkenyl, alkynyl or aromatic) or that may be interrupted with an oxygen atom, a sulfur atom and/or a nitrogen atom (e.g., -C-0-C-, -C-SH-C-, -C- H-C-).
  • An alkyl moiety is an alkane containing open points of attachment for connection for X 1 and X 2 .
  • An alkenyl moiety is an alkene containing open points of attachment for connection for X 1 and X 2 .
  • An alkynyl moiety is an alkyne containing open points of attachment for connection to Xi and X 2 .
  • Representative alkyls include straight or branched chain alkyls (e.g., methyl, ethyl, propyl, isopropyl) which may or may not be further substituted.
  • Representative alkenyls include straight or branched chain alkenyls (e.g., ethenyl, propenyl, isopropenyl).
  • alkynyls include straight or branched chain alkynyls which may or may not be further substituted (e.g., ethynyl, propynyl, isopropynyl).
  • An aromatic moiety is an unsaturated ring of atoms that is stabilized by an interaction of the bonds forming the ring.
  • An example of an aromatic moiety is benzyl.
  • interrupted aromatic moieties are pyridine (interrupted with a nitrogen atom); furan (interrupted with an oxygen atom); and thiophene (interrupted with a sulfur atom).
  • Xi and X 2 in General Formula I are independently selected to be a moiety where one or both are susceptible to hydrogen bonding and/or contains an electronegative atom.
  • Representative moieties for X 1 and X 2 will include functional groups that are capable of hydrogen bonding such as but not limited to hydroxyl moieties (-OH); carbonyl moieties (- CO); amine moieties (- H 2 ); aldehyde moieties (-CHO); halogen moieties (-Y, where Y is CI " , F " , Br “ or ⁇ ); ether moieties (-OR 1 , where R 1 is an alkyl (e.g., an alkyl of one to six carbon atoms) that may be substituted with a moiety that is susceptible or capable of hydrogen bonding and/or contains an electronegative atom); carboxyl moieties (-COOR 2 , where R 2 is a hydrogen atom or an alkyl (e.g., an alkyl of one to six carbon atom
  • substitution moieties that are susceptible or capable of hydrogen bonding for the noted alkyls associated with ether, carboxyl and amide moieties for X 1 and X 2 (R 1 , R 2 , R 3 and R 4 ) include hydroxyl, carbonyl, amine, aldehyde, halogen, ether, carboxyl and amide moieties.
  • Suitable evaporation reducing agents having General Formula I include ethylene glycol, glycine, serine, isoethionic acid, ethanolamine, polyethylene glycol and 1,3 -propanediol.
  • R is not substituted or interrupted.
  • Representative of an evaporation reducing agent where R is not substituted or interrupted is ethylene glycol (HO(CH 2 ) 2 OH) where R is ethyl and each of Xi and X 2 is a hydroxyl moiety.
  • a suitable reagent includes one or more evaporation reducing agents having the formula of General Formula I (e.g., a reagent includes a combination of two or three evaporation reducing agents and having the formula of General Formula I).
  • An evaporation reducing agent may be in a molecular free form (a molecule) or an acceptable salt thereof (a compound) or ionic liquid.
  • a salt is a hydrohalide salt of the molecule such as a hydrochloride salt.
  • an evaporation reducing agent as a solute reduces the vapor pressure of a solution upon its mixing with one or more other reagents.
  • Such solute could be a molecule, an ionic salt, an ionic liquid, a non-ionic agent that may exhibit complete or partial solubility or miscibility with water and is capable of reducing a partial pressure of an aqueous solution to which it is mixed or otherwise introduced.
  • an evaporation reducing agent may or may not form an azeotropic mixture with water. If an evaporation reducing agent does form an azeotropic mixture with water, the solute, in one embodiment, forms a negative azeotrope with water.
  • a resulting chemical potential of the solvent is lowered so that a partial pressure of the solvent molecules is reduced and, relative to a solvent-only solution, has a reduced tendency to transition into gas phase.
  • a partial pressure of water in an aqueous solution where a solute is a nonvolatile evaporation reducing agent will be reduced which would result in elevation of a boiling point of the mixture as well as a reduction in evaporation at the surface.
  • Hydrogen bonding can occur when in a molecule, a hydrogen atom is attached to an electronegative atom such as an oxygen, nitrogen or fluorine atom and the molecule comes in proximity with an electropositive atom.
  • the electrostatic attraction of this nature has a strength on the order of 5-30kJ/mol which is stronger than Van der Waals attraction but weaker than covalent or ionic bonding.
  • an evaporation reducing agent is mixed as a solute with water to reduce a vapor pressure of the water by creating a solution where a partial pressure of the water is reduced such that an assay (e.g., an immunohistologic assay) can be carried out more efficiently than if the partial pressure was not lowered.
  • a solute is selected such that there is no or minimum residue left behind which may interfere with an assay known to a person skilled in the art
  • a reagent operable for use in processing a cellular or tissue sample is prepared by combining a base reagent and an evaporation reducing agent.
  • Additional components may also be combined in a suitable composition.
  • the reagent can be added to an aqueous buffer solution to reduce evaporation during elevated temperatures.
  • the evaporation reducing agent is combined in an amount to limit any loss of the combination due to evaporation to 20 percent or less and, in another embodiment, to 10 percent or less.
  • an evaporation reducing agent or combination of reducing agents is/are present in a composition in an amount between 11 percent and 60 percent by volume or an amount between 1 percent and 60 percent of the reducing agent is a non-glycol- containing compound or a combination of reducing agents.
  • the composition may be mixed.
  • a method operable in processing of a paraffin-free or deparaffinized tissue or cellular sample for use in an assay at an elevated temperature is disclosed.
  • a method is operable to reduce evaporation of any aqueous based processing reagent. The method includes contacting a tissue or cellular sample with a reagent including an evaporation reducing agent (e.g., as a solute) having the formula of General Formula I:
  • Such contact includes applying the reagent to a sample on a slide.
  • the sample may be processed according to techniques known in the art.
  • a method operable in processing of a paraffin-free or deparaffinized tissue or cellular sample for use in an assay at an elevated temperature is disclosed.
  • a method is operable to reduce evaporation of any aqueous based processing reagent by adding a solute to a solvent. The resulting chemical potential of the solvent is lowered so that the partial pressure of the solvent molecules is reduced and they have lesser tendency to turn into gas phase. Partial pressure of water in an aqueous solution where solute is a nonvolatile substance is reduced which would result in elevation of boiling point as well as reduction in evaporation at the surface.
  • Example 1 Volume loss due to evaporation during oligonucleotide hybridization at different hybridization temperatures.
  • hybridization solution 400 ⁇ of hybridization solution (reagent) was applied to each of six sample slides and the slides were individually heated to different temperatures for 30 minutes. It was observed that evaporation occurred on the slide with hybridization solution during the hybridization step.
  • Example 2 Reducing evaporation during oligonucleotide hybridization by different reagents.
  • hybridization solution 400 ⁇ of hybridization solution (reagent) with different evaporation reducing agents was applied to respective sample slides and heated to 43° C for 30 minutes.
  • One sample slide included a hybridization solution with no evaporation reducing agent. It was observed that a significantly greater evaporation of the hybridization solution occurred with the sample slide containing a hybridization solution without an evaporation reducing agent during the 43° C hybridization step but was reduced with the addition of an evaporation reducing agent.
  • Example 3 Reducing evaporation using different concentrations of ethylene glycol during hybridization.
  • hybridization solution The assay performance for the hybridization solution containing ethylene glycol was found to be similar to hybridization solution without ethylene glycol.
  • Example 4 Reproducibility in reducing evaporation volume loss during hybridization.
  • Example 5 Reduction in evaporation during denaturation.
  • Example 6 Reduction in evaporation during antibody incubation step.
  • Example 7 Reducing evaporation during oligonucleotide hybridization by different reagents.
  • hybridization solution with different evaporation reducing agents 400 ⁇ was applied to respective sample slides and heated to 43 °C for 30 minutes. A hybridization solution containing no evaporation reducing agent was also applied to a sample slide. It was observed that evaporation occurred in the slide with hybridization solution during the 43°C hybridization step but was reduced with the addition of specific reagent.
  • Example 8 Reducing evaporation using ethylene glycol during hybridization at different temperatures.

Abstract

A method including contacting a tissue or cellular sample with a reagent including an evaporation reducing agent(s) having the general formula X1 - R - X2, wherein R is an alkyl, alkenyl, alkynyl or an aromatic moiety of 1 or more carbon atoms that may be substituted with an oxygen, nitrogen or sulfur and X1 and X2 are independently selected to be moiety that is susceptible to hydrogen bonding and processing the tissue or cellular sample. A reagent used in the processing of a tissue or cellular sample with the reagent containing an evaporation reducing agent.

Description

METHODS TO REDUCE EVAPORATION DURING ELEVATED TEMPERATURE
CROSS-REFERENCE TO RELATED APPLICATION The application is a non-provisional application claiming the benefit of the earlier filing date of co-pending U.S. Patent Application No. 14/701,043, filed April 15, 2015 and incorporated herein by reference.
FIELD
Assay reagent.
BACKGROUND
Immunohistochemical assays and assay techniques based on in situ hybridization are widely used in medical diagnostics such as to diagnose abnormal cells such as those found in cancerous tumors or to diagnose another disease. Many assays involve the addition of heat to the sample, such as to a sample in a reagent on a slide. Assay steps at elevated temperatures can cause substantial evaporation of assay reagents. When small volumes are used, sample denaturation, hybridization, wash and aging steps and the resulting assay can be compromised by evaporation.
DETAILED DESCRIPTION
A reagent and a method of use of a reagent including an evaporation reducing agent in an aqueous solution operable to reduce evaporation of the reagent in processing of a tissue or cellular sample is disclosed. Representative processing for which a reagent as described finds use include, but are not limited to, dewaxing, cell conditioning/antigen retrieval/cell aging, peroxide/phosphatase block, probe denature, probe hybridization, washing, linker hybridization, antibody incubation, probe detection, chromogen precipitation and counterstain involving an elevated temperature step (e.g. an elevated temperature step in an in situ hybridization procedure). The solution can representatively be used in
denaturation, wash or hybridization steps of a nucleic acid (single or double stranded probe) hybridization assay or in an incubation, antigen retrieval or a wash step using an antibody in immunohistochemical or immunocytochemical staining. A suitable reagent may include other components such as a detergent/surfactant which helps with solution spreading in a hybridization solution reagent. In one embodiment, a suitable amount of an evaporation reducing agent in a reagent operable for tissue or cellular processing is an amount that will limit a loss of the reagent due to evaporation to 20 percent or less under industry acceptable reagent processing conditions such as subjecting a hybridization solution to an elevated temperature between 25°C and 50°C for 10 minutes to 24 hours (e.g., a hybridization or incubation process) or to an elevated temperature of between 60°C and 100°C for two to ninety minutes (e.g., a denaturing or antigen retrieval process). In one embodiment, a suitable amount of an evaporation reducing agent is in the range of 11 percent to 60 percent by volume of a regent composition (e.g., solution).
In one embodiment, a reagent (composition) includes an effective evaporation reducing amount of an evaporation reducing agent comprising the formula of General Formula I:
Xi- R - X2,
wherein R is an alkyl, an alkenyl, an alkynyl or an aromatic moiety of one or more carbon atoms (e.g., one to six carbon atoms in one embodiment and one to four carbon atoms in another embodiment where it is appreciated that if R is a moiety of one carbon, R is an alkyl) that may be substituted with oxygen atom, sulfur atom and/or or nitrogen atom (e.g., -OH, - SH, or - H2 is substituted for a hydrogen atom of one or more hydrocarbons defining the alkyl, alkenyl, alkynyl or aromatic) or that may be interrupted with an oxygen atom, a sulfur atom and/or a nitrogen atom (e.g., -C-0-C-, -C-SH-C-, -C- H-C-). An alkyl moiety is an alkane containing open points of attachment for connection for X1 and X2. An alkenyl moiety is an alkene containing open points of attachment for connection for X1 and X2. An alkynyl moiety is an alkyne containing open points of attachment for connection to Xi and X2. Representative alkyls include straight or branched chain alkyls (e.g., methyl, ethyl, propyl, isopropyl) which may or may not be further substituted. Representative alkenyls include straight or branched chain alkenyls (e.g., ethenyl, propenyl, isopropenyl).
Representative alkynyls include straight or branched chain alkynyls which may or may not be further substituted (e.g., ethynyl, propynyl, isopropynyl). An aromatic moiety is an unsaturated ring of atoms that is stabilized by an interaction of the bonds forming the ring. An example of an aromatic moiety is benzyl. Examples of interrupted aromatic moieties are pyridine (interrupted with a nitrogen atom); furan (interrupted with an oxygen atom); and thiophene (interrupted with a sulfur atom).
Xi and X2 in General Formula I are independently selected to be a moiety where one or both are susceptible to hydrogen bonding and/or contains an electronegative atom. Representative moieties for X1 and X2 will include functional groups that are capable of hydrogen bonding such as but not limited to hydroxyl moieties (-OH); carbonyl moieties (- CO); amine moieties (- H2); aldehyde moieties (-CHO); halogen moieties (-Y, where Y is CI", F", Br" or Γ); ether moieties (-OR1, where R1 is an alkyl (e.g., an alkyl of one to six carbon atoms) that may be substituted with a moiety that is susceptible or capable of hydrogen bonding and/or contains an electronegative atom); carboxyl moieties (-COOR2, where R2 is a hydrogen atom or an alkyl (e.g., an alkyl of one to six carbon atoms) that may be substituted with a moiety that is susceptible or capable of hydrogen bonding and/or contains an electronegative atom); and amide moieties (-CO R R4, where R3 and R4 are independently selected from a hydrogen atom or an alkyl (e.g., an alkyl of one to six carbon atoms) that may be substituted with a moiety that is susceptible or capable of hydrogen bonding and/or contains an electronegative atom). Representative of substitution moieties that are susceptible or capable of hydrogen bonding for the noted alkyls associated with ether, carboxyl and amide moieties for X1 and X2 (R1, R2, R3 and R4) include hydroxyl, carbonyl, amine, aldehyde, halogen, ether, carboxyl and amide moieties.
Examples of suitable evaporation reducing agents having General Formula I include ethylene glycol, glycine, serine, isoethionic acid, ethanolamine, polyethylene glycol and 1,3 -propanediol. In one embodiment, R is not substituted or interrupted. Representative of an evaporation reducing agent where R is not substituted or interrupted is ethylene glycol (HO(CH2)2OH) where R is ethyl and each of Xi and X2 is a hydroxyl moiety. An example of an evaporation reducing agent where X2 is a primary amide that is further substituted with a moiety susceptible or capable of hydrogen bonding is H2N-(CH2)3- H(CH2)2COOH, where R is -(CH2) -; Xi is - H2 and X2 is - H(CH2)2COOH. In one embodiment, a suitable reagent includes one or more evaporation reducing agents having the formula of General Formula I (e.g., a reagent includes a combination of two or three evaporation reducing agents and having the formula of General Formula I).
An evaporation reducing agent may be in a molecular free form (a molecule) or an acceptable salt thereof (a compound) or ionic liquid. An example of a salt is a hydrohalide salt of the molecule such as a hydrochloride salt.
In one embodiment, an evaporation reducing agent as a solute reduces the vapor pressure of a solution upon its mixing with one or more other reagents. Such solute could be a molecule, an ionic salt, an ionic liquid, a non-ionic agent that may exhibit complete or partial solubility or miscibility with water and is capable of reducing a partial pressure of an aqueous solution to which it is mixed or otherwise introduced. Additionally, an evaporation reducing agent may or may not form an azeotropic mixture with water. If an evaporation reducing agent does form an azeotropic mixture with water, the solute, in one embodiment, forms a negative azeotrope with water.
Generally speaking, when a solvent and a solute are mixed in this context, a resulting chemical potential of the solvent is lowered so that a partial pressure of the solvent molecules is reduced and, relative to a solvent-only solution, has a reduced tendency to transition into gas phase. Representatively, a partial pressure of water in an aqueous solution where a solute is a nonvolatile evaporation reducing agent will be reduced which would result in elevation of a boiling point of the mixture as well as a reduction in evaporation at the surface.
Hydrogen bonding can occur when in a molecule, a hydrogen atom is attached to an electronegative atom such as an oxygen, nitrogen or fluorine atom and the molecule comes in proximity with an electropositive atom. The electrostatic attraction of this nature has a strength on the order of 5-30kJ/mol which is stronger than Van der Waals attraction but weaker than covalent or ionic bonding.
In one embodiment, an evaporation reducing agent is mixed as a solute with water to reduce a vapor pressure of the water by creating a solution where a partial pressure of the water is reduced such that an assay (e.g., an immunohistologic assay) can be carried out more efficiently than if the partial pressure was not lowered. In one embodiment, a solute is selected such that there is no or minimum residue left behind which may interfere with an assay known to a person skilled in the art,
In one embodiment, a reagent operable for use in processing a cellular or tissue sample is prepared by combining a base reagent and an evaporation reducing agent.
Additional components may also be combined in a suitable composition. The reagent can be added to an aqueous buffer solution to reduce evaporation during elevated temperatures. In one embodiment, the evaporation reducing agent is combined in an amount to limit any loss of the combination due to evaporation to 20 percent or less and, in another embodiment, to 10 percent or less. Representatively, an evaporation reducing agent or combination of reducing agents is/are present in a composition in an amount between 11 percent and 60 percent by volume or an amount between 1 percent and 60 percent of the reducing agent is a non-glycol- containing compound or a combination of reducing agents. Following a combination of a base reagent, evaporation reducing agent and any other components, the composition may be mixed.
In one embodiment, a method operable in processing of a paraffin-free or deparaffinized tissue or cellular sample for use in an assay at an elevated temperature is disclosed. In one embodiment, a method is operable to reduce evaporation of any aqueous based processing reagent. The method includes contacting a tissue or cellular sample with a reagent including an evaporation reducing agent (e.g., as a solute) having the formula of General Formula I:
Xi- R - X2.
Such contact includes applying the reagent to a sample on a slide. Following contacting the sample with the reagent, the sample may be processed according to techniques known in the art.
In one embodiment, a method operable in processing of a paraffin-free or deparaffinized tissue or cellular sample for use in an assay at an elevated temperature is disclosed. In one embodiment, a method is operable to reduce evaporation of any aqueous based processing reagent by adding a solute to a solvent. The resulting chemical potential of the solvent is lowered so that the partial pressure of the solvent molecules is reduced and they have lesser tendency to turn into gas phase. Partial pressure of water in an aqueous solution where solute is a nonvolatile substance is reduced which would result in elevation of boiling point as well as reduction in evaporation at the surface.
EXAMPLES
Example 1 : Volume loss due to evaporation during oligonucleotide hybridization at different hybridization temperatures.
400 μΐ of hybridization solution (reagent) was applied to each of six sample slides and the slides were individually heated to different temperatures for 30 minutes. It was observed that evaporation occurred on the slide with hybridization solution during the hybridization step.
Table 1. Effect of temperature on evaporation
Figure imgf000006_0001
Example 2: Reducing evaporation during oligonucleotide hybridization by different reagents.
400 μΐ of hybridization solution (reagent) with different evaporation reducing agents was applied to respective sample slides and heated to 43° C for 30 minutes. One sample slide included a hybridization solution with no evaporation reducing agent. It was observed that a significantly greater evaporation of the hybridization solution occurred with the sample slide containing a hybridization solution without an evaporation reducing agent during the 43° C hybridization step but was reduced with the addition of an evaporation reducing agent.
Table 2. Ability of added agent to hybridization
solution rea ent to reduce eva oration
Figure imgf000007_0002
Example 3 : Reducing evaporation using different concentrations of ethylene glycol during hybridization.
400 μΐ of hybridization solution (reagent) having different concentrations of an evaporation reducing agent of ethylene glycol was applied to respective sample slides and heated to 43° C for 30 minutes. For comparison, 400 μΐ of hybridization solution without ethylene glycol was also applied to a sample slide and heated to 43° C for 30 minutes. It was observed that evaporation was reduced with the addition of ethylene glycol to the
hybridization solution. The assay performance for the hybridization solution containing ethylene glycol was found to be similar to hybridization solution without ethylene glycol.
Table 3. Reduction in volume loss in % ethylene glycol (EG)
in hybridization solution
Figure imgf000007_0001
Comparison to Starting Volume
27% 400 10 2%
33% 400 0 0%
40% 400 0 0%
Example 4: Reproducibility in reducing evaporation volume loss during hybridization.
400 μΐ of hybridization solution with specific concentrations of an evaporation reducing agent of ethylene glycol was applied to each sample slide and heated to 43° C for 30 minutes. For comparison, 400 μΐ of hybridization solution was applied to each sample slide and heated to 43°C for 30 minutes. It was observed that evaporation was reduced with the addition of ethylene glycol to the hybridization solution.
Table 4 Reduction in eva oration due to addition of eth lene l col
Figure imgf000008_0001
Example 5 : Reduction in evaporation during denaturation.
About 400 μΐ of hybridization solution with an evaporation reducing agent of 20 percent ethylene glycol was applied to each sample slide and heated to 92 - 98° C for 2 minutes. For comparison, about 400 μΐ of hybridization solution without ethylene glycol was applied to each sample slide and heated to 92 - 98° C for 2 minutes. It was observed that evaporation was reduced with the addition of ethylene glycol to the hybridization solution. Table 5. Reduction in evaporation with addition of ethylene glycol to hybridization solution durin denaturation.
Figure imgf000009_0001
Example 6: Reduction in evaporation during antibody incubation step.
About 400 μΐ of primary antibody diluent (reagent) with an evaporation reducing agent of 20 percent ethylene glycol was applied to each sample slide and incubated at a specific temperature for 30 minutes. For comparison, about 400 μΐ of primary antibody diluent without ethylene glycol was applied to each sample slide and incubated at a specific temperature for 30 minutes. It was observed that evaporation was reduced with the addition of ethylene glycol to the antibody diluent.
Table 6. Reduction in evaporation with addition of ethylene glycol to antibody diluent
Figure imgf000009_0002
Example 7: Reducing evaporation during oligonucleotide hybridization by different reagents.
400 μΐ of hybridization solution with different evaporation reducing agents was applied to respective sample slides and heated to 43 °C for 30 minutes. A hybridization solution containing no evaporation reducing agent was also applied to a sample slide. It was observed that evaporation occurred in the slide with hybridization solution during the 43°C hybridization step but was reduced with the addition of specific reagent.
Table 7. Ability of added evaporation reducing agent to
h bridization solution to reduce eva oration
Figure imgf000010_0001
Example 8: Reducing evaporation using ethylene glycol during hybridization at different temperatures.
400 μΐ of hybridization solution (reagent) with ethylene glycol was applied to respective sample slides and heated to 35, 37 or 40° C for 120 minutes. For comparison, 400 μΐ of hybridization solution without ethylene glycol was also applied to a sample slide and heated to 40° C for 120 minutes. It was observed that evaporation was reduced with the addition of ethylene glycol to the hybridization solution. The assay performance for the hybridization solution containing ethylene glycol at different hybridization temperatures was found to be similar to hybridization solution without ethylene glycol.
Hybridization solution
Chemical Final cone.
SSC 2 x
Tris-HCl 10 mM
Dextran sulfate 10 %
Denhardt's solution 2 x
Tween 0.05 %
Triton 0.10 %
Salmon sperm DNA 50 μ^ιηΐ Chemical Final cone.
Evaporation reducing agent varied
water varied
Primary antibody diluent
Chemical Final cone.
Sodium Azide 0.05%
Sodium Chloride 300 mM
Sodium Phosphate Dibasic 8 mM
Potassium Phosphate monobasic 2 mM
Green Color Dye 0.025%
BSA Powder 1%
Tris Base 10 mM
Tris HC1 40 mM
Tween 0.05%
Triton 0.1%
Evaporation reducing agent varied
water varied
In the description above, for the purposes of explanation, numerous specific details have been set forth in order to provide a thorough understanding of the embodiments. It will be apparent however, to one skilled in the art, that one or more other embodiments may be practiced without some of these specific details. The particular embodiments described are not provided to limit the invention but to illustrate it. The scope of the invention is not to be determined by the specific examples provided above but only by the claims below. In other instances, well-known structures, devices, and operations have been shown in block diagram form or without detail in order to avoid obscuring the understanding of the description. Where considered appropriate, reference numerals or terminal portions of reference numerals have been repeated among the figures to indicate corresponding or analogous elements, which may optionally have similar characteristics.
It should also be appreciated that reference throughout this specification to "one embodiment", "an embodiment", "one or more embodiments", or "different embodiments", for example, means that a particular feature may be included in the practice of the invention. Similarly, it should be appreciated that in the description various features are sometimes grouped together in a single embodiment, figure, or description thereof for the purpose of streamlining the disclosure and aiding in the understanding of various inventive aspects. This method of disclosure, however, is not to be interpreted as reflecting an intention that the invention requires more features than are expressly recited in each claim. Rather, as the following claims reflect, inventive aspects may lie in less than all features of a single disclosed embodiment. Thus, the claims following the Detailed Description are hereby expressly incorporated into this Detailed Description, with each claim standing on its own as a separate embodiment of the invention.

Claims

1. A method comprising:
contacting a tissue or cellular sample with at least one evaporation reducing agent having the general formula:
Xi - R - X2,
wherein R is an alkyl moiety, alkenyl moiety, alkynyl moiety or aromatic moiety that may be substituted or interrupted with an oxygen, sulfur or nitrogen atom and Xi and X2 are independently selected to be moiety that comprises an electronegative atom or is susceptible to hydrogen bonding and wherein the at least one reagent is present in an amount of one percent or greater when the at least one reagent is a non-glycol-containing reagent or a combination of more than one reagent or an amount of 11 percent by volume or greater when the at least one reagent is a glycol-containing reagent; and
processing the tissue or cellular sample.
2. The method of claim 1, wherein the evaporation reducing agent is present in an amount up to 60 percent by volume.
3. The method of claim 1, wherein the processing comprises an elevated temperature.
4. The method of claim 1, wherein the processing comprises a hybridization.
5. The method of claim 1, wherein the processing comprises a dehybridization.
6. The method of claim 1, wherein the processing comprises a wash step.
7. The method of claim 1, wherein the processing comprises an antigen binding.
8. The method of claim 1, wherein the processing comprises an antigen retrieval, cell conditioning or cell aging.
9. The method of claim 1, wherein Xi and X2 are independently selected such that at least one contains one or more from group consisting of hydroxyl moieties, carbonyl moieties, amine moieties, aldehyde moieties, halogen moieties, ether moieties, carboxyl moieties and amide moieties.
10. The method of claim 9, wherein X1 and X2 are independently selected to include at least a moiety selected from the group consisting of -OH, -CHO, -OR1, - H2, -COOR2 and - CONH2, wherein R1 is an alkyl and R2 is a hydrogen atom or an alkyl.
11. The method of claim 1, wherein R is an alkyl comprising two or more carbon atoms of which one or more may or may not be substituted with O, N or S.
12. The method of claim 1, wherein the reagent comprises ethylene glycol.
13. The method of claim 1, wherein the reagent comprises glycine, serine, isoethionic acid, ethanolamine, glycerol, polyethylene glycol, 1,3-propanediol or combination of agents.
14. The method of claim 1, wherein the reagent contains a detergent or surfactant.
15. The method of claim 1, wherein the reagent comprises a combination of evaporation reducing agents.
16. A reagent operable for use in processing of a tissue or cellular sample, the reagent comprising an evaporation reducing agent present in an amount of one percent or greater when the at least one reagent is a non-glycol-containing reagent or a combination of more than one reagent or an amount of 11 percent by volume when the at least one reagent is a glycol-containing reagent or greater having the general formula:
Xi - R - X2
wherein R is an alkyl moiety, alkenyl moiety or alkynyl moiety that may be substituted or interrupted with an oxygen, sulfur or nitrogen atom and Xi and X2 are independently selected to be a moiety that comprises an electronegative atom or is susceptible to hydrogen bonding.
17. The reagent of claim 16, wherein the evaporation reducing agent is present in an amount up to 60 percent by volume.
18. The reagent of claim 16, wherein X1 and X2 are independently selected so that at least one contains one or more from group of hydroxyl moieties, carbonyl moieties, amine moieties, aldehyde moieties, halogen moieties, ether moieties, carboxyl moieties and amide moieties.
19. The reagent of claim 16 comprises a detergent or surfactant.
20. The reagent of claim 16 comprises a combination of evaporation reducing agents.
PCT/US2016/027945 2015-04-30 2016-04-15 Methods to reduce evaporation during elevated temperature WO2017180160A1 (en)

Priority Applications (8)

Application Number Priority Date Filing Date Title
DK16720619.2T DK3289098T3 (en) 2015-04-30 2016-04-15 Methods to reduce evaporation at elevated temperature
BR112017022973A BR112017022973A2 (en) 2015-04-30 2016-04-15 methods to reduce evaporation during elevated temperature
CA2983930A CA2983930C (en) 2016-04-15 2016-04-15 Methods to reduce evaporation during elevated temperature
AU2016402370A AU2016402370B2 (en) 2016-04-15 2016-04-15 Methods to reduce evaporation during elevated temperature
JP2017554865A JP6550471B2 (en) 2016-04-15 2016-04-15 Evaporation reduction method and reagent used therefor
CN201680023650.5A CN107614702A (en) 2016-04-15 2016-04-15 The method for reducing evaporation at elevated temperatures
EP16720619.2A EP3289098B1 (en) 2015-04-30 2016-04-15 Methods to reduce evaporation during elevated temperature
PCT/US2016/027945 WO2017180160A1 (en) 2016-04-15 2016-04-15 Methods to reduce evaporation during elevated temperature

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
PCT/US2016/027945 WO2017180160A1 (en) 2016-04-15 2016-04-15 Methods to reduce evaporation during elevated temperature

Publications (1)

Publication Number Publication Date
WO2017180160A1 true WO2017180160A1 (en) 2017-10-19

Family

ID=55911068

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2016/027945 WO2017180160A1 (en) 2015-04-30 2016-04-15 Methods to reduce evaporation during elevated temperature

Country Status (5)

Country Link
JP (1) JP6550471B2 (en)
CN (1) CN107614702A (en)
AU (1) AU2016402370B2 (en)
CA (1) CA2983930C (en)
WO (1) WO2017180160A1 (en)

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20070048770A1 (en) * 2005-07-15 2007-03-01 Jaekel Robert W Reagents and methods for processing biological samples
WO2012055981A1 (en) * 2010-10-27 2012-05-03 Glaxosmithkline Biologicals S.A. Immunogenic compositions and methods for treating neurologic disorders
US20140242595A1 (en) * 2013-02-22 2014-08-28 Cellular Dynamics International, Inc. Hepatocyte production via forward programming by combined genetic and chemical engineering
WO2014144663A1 (en) * 2013-03-15 2014-09-18 The Johns Hopkins University Methods and compositions for improving cognitive function

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1994002644A1 (en) * 1992-07-17 1994-02-03 Aprogenex, Inc. In situ detection of nucleic acids using 3sr amplification
WO1994002646A1 (en) * 1992-07-17 1994-02-03 Aprogenex Inc. Enriching and identyfying fetal cells in maternal blood for in situ hybridization
US5500339A (en) * 1993-03-30 1996-03-19 Amersham Life Science, Inc. DNA denaturation method
US6127188A (en) * 1995-10-06 2000-10-03 Mj Research, Inc. Method and apparatus for controlling evaporation in histological procedures
AU766614B2 (en) * 1998-09-03 2003-10-23 Ventana Medical Systems, Inc. Removal of embedding media from biological samples and cell conditioning on automated staining instruments
AUPQ257199A0 (en) * 1999-08-31 1999-09-23 Commonwealth Scientific And Industrial Research Organisation Vaccine antigens of moraxella
US20040235104A1 (en) * 2003-05-08 2004-11-25 Millennium Pharmaceuticals, Inc. Human SEF molecule and uses therefor
JP6214137B2 (en) * 2012-07-17 2017-10-18 日本ハム株式会社 Nucleic acid hybridization solution

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20070048770A1 (en) * 2005-07-15 2007-03-01 Jaekel Robert W Reagents and methods for processing biological samples
WO2012055981A1 (en) * 2010-10-27 2012-05-03 Glaxosmithkline Biologicals S.A. Immunogenic compositions and methods for treating neurologic disorders
US20140242595A1 (en) * 2013-02-22 2014-08-28 Cellular Dynamics International, Inc. Hepatocyte production via forward programming by combined genetic and chemical engineering
WO2014144663A1 (en) * 2013-03-15 2014-09-18 The Johns Hopkins University Methods and compositions for improving cognitive function

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
R. P. VAN GIJLSWIJK ET AL: "Improved localization of fluorescent tyramides for fluorescence in situ hybridization using dextran sulfate and polyvinyl alcohol.", JOURNAL OF HISTOCHEMISTRY AND CYTOCHEMISTRY, vol. 44, no. 4, 1 April 1996 (1996-04-01), US, pages 389 - 392, XP055278459, ISSN: 0022-1554, DOI: 10.1177/44.4.8601698 *

Also Published As

Publication number Publication date
JP2018518941A (en) 2018-07-19
CN107614702A (en) 2018-01-19
AU2016402370A1 (en) 2018-01-18
CA2983930C (en) 2023-05-02
AU2016402370B2 (en) 2023-07-06
CA2983930A1 (en) 2017-10-19
JP6550471B2 (en) 2019-07-24

Similar Documents

Publication Publication Date Title
EP2521778B1 (en) Methods, compositions, and kits for recovery of nucleic acids or proteins from fixed tissue samples
JP5137585B2 (en) Method and composition for treating microemulsion based tissue
JP5841430B2 (en) Cleaning composition and method
JP6116060B2 (en) Methods and kits for processing biological samples embedded in waxes
ES2593464T3 (en) Enhanced chromogen deposition using pyrimidine analogues
JP2011033548A (en) Two-dimensional electrophoretic method
US10281374B2 (en) Method of pretreatment of biological samples for an analyte-staining assay method
JP5323261B2 (en) Use of bis-maleic anhydride cross-linking agent for fixation of cell or tissue samples
JP2014027934A (en) Method for enhancing reaction efficiency and sensitivity of nucleic acid amplification from biological material using ionic liquid
JP6724138B2 (en) Compositions and methods for hybridization
AU2016402370B2 (en) Methods to reduce evaporation during elevated temperature
EP3289098A1 (en) Methods to reduce evaporation during elevated temperature
US10006084B2 (en) Methods to reduce evaporation during elevated temperature
WO2014150275A1 (en) Polyacrylamide gels for rapid casting, blotting, and imaging, with storage stability
CN115448976A (en) Use of quaternary ammonium cation and tertiary ammonium cation detergents in protein denaturation
KR20140101314A (en) Cleaning composition for leather
JP6146742B2 (en) Method for detecting redox state of thiol group of protein, and reagent and kit used therefor
WO2022008900A1 (en) Methods and uses relating to proteins
JP2005300313A (en) Method of preventing protein adsorption
BRPI0912041A2 (en) composition and methods for detecting chromosomal aberrations with hybridization buffers

Legal Events

Date Code Title Description
ENP Entry into the national phase

Ref document number: 2017554865

Country of ref document: JP

Kind code of ref document: A

ENP Entry into the national phase

Ref document number: 2983930

Country of ref document: CA

REG Reference to national code

Ref country code: BR

Ref legal event code: B01A

Ref document number: 112017022973

Country of ref document: BR

WWE Wipo information: entry into national phase

Ref document number: 2016402370

Country of ref document: AU

Ref document number: 2016720619

Country of ref document: EP

ENP Entry into the national phase

Ref document number: 2016402370

Country of ref document: AU

Date of ref document: 20160415

Kind code of ref document: A

ENP Entry into the national phase

Ref document number: 112017022973

Country of ref document: BR

Kind code of ref document: A2

Effective date: 20171025

NENP Non-entry into the national phase

Ref country code: DE