WO2011132939A2 - Rtk-bpb specifically binding to rtk - Google Patents

Rtk-bpb specifically binding to rtk Download PDF

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WO2011132939A2
WO2011132939A2 PCT/KR2011/002839 KR2011002839W WO2011132939A2 WO 2011132939 A2 WO2011132939 A2 WO 2011132939A2 KR 2011002839 W KR2011002839 W KR 2011002839W WO 2011132939 A2 WO2011132939 A2 WO 2011132939A2
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type
cytokine
trp
thr
glu
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PCT/KR2011/002839
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Korean (ko)
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WO2011132939A3 (en
WO2011132939A8 (en
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전상용
김성현
박세호
김대진
이상헌
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광주과학기술원
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K1/00General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
    • C07K1/107General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length by chemical modification of precursor peptides
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B30/00Methods of screening libraries
    • C40B30/04Methods of screening libraries by measuring the ability to specifically bind a target molecule, e.g. antibody-antigen binding, receptor-ligand binding
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00Libraries per se, e.g. arrays, mixtures
    • C40B40/04Libraries containing only organic compounds
    • C40B40/10Libraries containing peptides or polypeptides, or derivatives thereof
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/705Assays involving receptors, cell surface antigens or cell surface determinants

Definitions

  • Cytokine_BPB that specifically binds to cytokine
  • the present invention relates to Cytokine_BPB which specifically binds to Cytokine.
  • Antibodies are immunoglobulin proteins, a type of plasma protein produced by B cells, that specifically inactivate and inactivate antigens by specifically recognizing and binding to specific sites of antigens.
  • the specificity and high affinity of these antigen-antibody reactions and the diversity of antibodies that can distinguish tens of millions of antigens have led to the emergence of many types of antibody products, including diagnostics and therapeutics.
  • the FDA has approved 21 monoclonal antibodies, and antibodies such as Rituximab and Herceptin have been effective in more than 50% of patients who have not responded to other treatments. Has demonstrated successful clinical treatment of lymphoma, colon cancer or breast cancer using monoclonal antibodies.
  • the total market size of therapeutic antibodies is estimated to grow at an annual average of 203 ⁇ 4, from $ 10 billion in 2004 to $ 30 billion in 2010, and the market is expected to grow exponentially.
  • the development of new drugs using antibodies is active because the drug development period is short, investment costs are low, and side effects can be easily predicted.
  • the antibody is a herbal medicine, the human body is hardly affected, and the half-life in the body is overwhelmingly long compared to low molecular weight drugs, so the patient is friendly.
  • monoclonal antibodies in humans are recognized as foreign antigens and can cause severe allergic reactions or hypersensitivity.
  • the anti-cancer monoclonal antibody is used clinically, the production cost is high, and thus the price of the therapeutic agent increases rapidly.
  • Antibody-replacement protein is a recombinant protein made to have constant and variable regions like an antibody.
  • a small and stable protein is replaced with a random sequence of amino acids to make a library, which is then screened for the target material, thereby providing high affinity and good Substances with specificity can be found.
  • avimers and affibodies among antibody replacement proteins have been reported to have a picomol affinity for a target substance.
  • These antibodies alternative protein can penetrate deep in the tumor size by a small, stable and has high-beam "and is generally less cause an immune banung.
  • antibody replacement proteins that are being commercialized by venture companies or multinational pharmaceutical companies are fibronectin type ⁇ domain, lipocalin, LDLR-A domain, crystallin, protein A and ankyrin. It uses a protein called repeat (Ankyrin repeat), BPTI, and has a high affinity of several nanomolar to picomolar to target. Adnectin, Avimer, and Kunitz domains are currently undergoing FDA clinical trials.
  • the present invention focused on peptide-based antibody replacement proteins that are different from antibody replacement proteins using proteins up to now.
  • Peptides have been widely used in place of antibody therapeutics due to proper pharmacokinetics, mass productivity, low toxicity, antigenic inhibition and low production cost compared to antibodies.
  • the advantages of peptides as therapeutic drugs are low production costs, high safety and responsiveness, relatively low patent royalties, and less exposure to unwanted immune systems, which can inhibit the production of antibodies to the peptides themselves. Deformation through is easy and accurate.
  • most peptides exhibit low affinity and specificity for specific protein targets compared to antibodies, they cannot be used for various applications. therefore, There is a need in the art for the development of new peptide-based antibody replacement proteins that can overcome the disadvantages of peptides.
  • the present inventors have tried to develop a peptide material capable of specific binding with high affinity to a biological target molecule. This is expected to be a technology that can produce new drug candidates with high affinity and specificity in a short time using peptides having low affinity reported for a large number of targets.
  • Cytokines are secreted by certain immune cells that carry signals between cells. Cytokines stimulate immune cells to activate immune response or inhibit black.
  • Cytokines are involved in various biological and pathological phenomena (eg, autoimmune diseases), and many studies have been conducted on medicines targeting them.
  • the inventors have sought to develop a system capable of delivering various substances intracellularly or to the cell surface based on Cytokine binding and specificity.
  • the peptides are randomly bound to both ends of the structural stabilization site having a relatively rigid peptide backbone, and when the two peptides are jointly bound to the cytokine molecule, the binding ability and specificity are greatly increased.
  • a bipodal peptide binder (BPB) having a compound was completed.
  • an object of the present invention is to provide a Cytokine-bipodal peptide binder (Cytokine-BPB).
  • Another object of the present invention is to provide a Cytokine-bipodal peptide binder (Cytokine-BPB).
  • Cytokine-BPB Cytokine-bipodal peptide binder
  • Cytokine-target binding region I and Cytokine-target binding region ⁇ (Cytokine) bound to both ends of the structural stabilization site and each comprising n and m amino acids selected at random; Cytokine—bipodal peptide binders that specifically bind to Cytokine, including -target binding region ⁇ ).
  • the inventors have sought to develop a system capable of delivering various substances intracellularly or to the cell surface based on Cytokine binding and specificity.
  • the peptides are randomly bound to both ends of the structural stabilization site having a relatively rigid peptide backbone, and when the two peptides are jointly bound to the cytokine molecule, the binding ability and specificity are greatly increased. It was confirmed that a bipodal peptide binder (BPB) having a was obtained.
  • BPB bipodal peptide binder
  • the basic strategy of the present invention is to connect peptides that are bound to the target at both ends of the rigid peptad backbone.
  • the rigid peptide backbone acts to stabilize the overall structure of the bipodal peptide provider and enhances the binding of the target binding site I and the target binding site ⁇ to the target molecule.
  • Structural stabilization sites usable in the present invention include parallel, antiparallel or parallel and antiparallel amino acid strands, interstrand hydrogen bonds, electrostatic interactions, hydrophobic interactions, van der Waals interactions, pi-pi Protein structure motifs in which non-covalent bonds are formed by interaction, cation-pi interaction, or a combination thereof. Hydrogen bonds between the strands, electrostatic interactions, hydrophobic interactions, van der Waals interactions, pi-pi interactions, cation-pi interactions, or their Non-covalent bonds formed by combination contribute to the rigidity of the structure stabilization site.
  • interstrand non-covalent bonds at the structure stabilization site include hydrogen bonds, hydrophobic interactions, van der Waals interactions, pi-pi interactions or combinations thereof.
  • covalent bond there may be a covalent bond to the structured stabilization site.
  • disulfide bonds may be formed at the structured stabilization site to further increase the robustness of the structure stabilized site.
  • the increase in firmness by such covalent bonds is given in consideration of the specificity and affinity of the bipodal peptide binder for the target.
  • the amino acid strands of the structure stabilization site are linked by a linker.
  • linker as used to refer to the strands refers to the material that connects the strands.
  • the turn sequence in ⁇ -hairpin acts as a linker
  • a substance connecting two c-terminus of leucine zipper eg , Peptide linkers
  • the linker connects the parallel, antiparallel or parallel and antiparallel amino acid strands. For example, at least two strands (preferably two strands) arranged in parallel fashion, at least two strands (preferably two strands) arranged in antiparallel fashion, and at least three strands arranged in parallel and antiparallel fashion.
  • the linker (preferably three strands) is connected by the linker.
  • the linker is a turn sequence or peptide linker.
  • the turn sequence is ⁇ -turn, ⁇ -turn, ⁇ -turn, ⁇ -turn or ⁇ -loop (Venkatachalam CM (1968), Biopolymers, 6, 1425-1436; Nemethy G and Printz MP. (1972), Macro / no 1 ecu les, 5, 755-758; Lewis PN et al,, (1973), Biochi. Biophys. Acta, 303, 211-229; Toniolo C. (1980) CRC Crit. Rev. Biochem., 9, 1-44; Richardson JS. (1981), Adv.
  • the turn sequence used in the present invention is ⁇ -turn.
  • ⁇ -turn When ⁇ -turn is used as the turn sequence, it is preferably a type I, type ⁇ , type ⁇ , type ⁇ ', type m or type m' turn sequence, more preferably type I, type I ' ⁇ type ⁇ , A type ⁇ 'turn sequence, even more preferably a type j' or type ⁇ 'turn sequence, and most preferably a type ⁇ turn sequence ( ⁇ , L. Sibanda et al., /. Mol. Biol., 1989, 206, 4, 759-777; BL Sibanda et al., Methods Enzymol., 1991, 202, 59-82).
  • the turn sequence in the present invention is H. Jane Dyson et al. , Eur. J. Biochem. 255: 462-471 (1998), which is incorporated herein by reference.
  • Available for the turn sequence include the following amino acid sequences: X-Pro-Gly-Glu-Val; Ala— X-Gly—Glu-Val (X is selected from 20 amino acids).
  • X is selected from 20 amino acids.
  • the peptide linker connects two strands arranged in a parallel manner or two strands arranged in an antiparallel manner. Desirable
  • Peptide linkers can be used in any known in the art.
  • the sequence of a suitable peptide linker may be selected in consideration of the following factors: (a) the ability to be applied to flexible extended conformation; (b) the ability not to create secondary structures that interact with biological target molecules; And (C) absence of hydrophobic residues or residues with charges that interact with the biological target molecule.
  • Preferred peptide linkers include Gly, Asn and Ser residues. Other neutral amino acids such as Thr and Ala can also be included in the linker sequence. Suitable amino acid sequences for linkers are Marat ea et al., Gene 40: 39-46 (1985); Murphy et al., Proc. Natl. Acad Sci. USA 83: 8258-8562 (1986); US Pat. Nos. 4,935,233, 4,751,180 and 5,990,275.
  • the peptide linker sequence may consist of 1-50 amino acid residues.
  • the structural stabilization site is a ⁇ -hairpin, a linker linked ⁇ -sheet or a linker leucine zipper, more preferably the structural stabilization site is a ⁇ -hairpin or linker linked ⁇ -sheet And most preferably ⁇ -hairspray.
  • ⁇ -hairpin refers to the simplest protein motif comprising two ⁇ strands, the two ⁇ strands representing an antiparallel alignment with each other. In this ⁇ -hairpin the two ⁇ strands are generally linked by turn sequences.
  • the turn sequence applied to the ⁇ -hairpin is a type I, type ⁇ , type ⁇ , type ⁇ ', type m or type ⁇ ' turn sequence, more preferably type I, type 1 ', type n, It is a type ⁇ 'turn sequence, even more preferably a type ⁇ or type ⁇ ' turn sequence, and most preferably a type ⁇ turn sequence.
  • turn sequences represented by X-Pro-Gly-Glu-Val; or Ala-X-Gly-Glii-Val (X is selected from 20 amino acids) can also be used for ⁇ -hairpins.
  • the type I turn sequence is Asp-Asp-Ala-Thr-Lys-Thr
  • the type ⁇ turn sequence is Glu-Asn-Gly-Lys
  • the type ⁇ turn sequence is X-Pro -Gly-Glu-Val
  • Ala-X—Gly—Glu-Val X is selected from 20 amino acids
  • the type ⁇ ′ turn sequence is Glu-Gly-Asn-Lys or Glu-D-Pro—Asn -Lys.
  • Peptides with ⁇ -hairpin formulations are well known in the art. See, for example, US Pat. No. 6,914,123 and Andrea G. Cochran et al. , PNAS, tryptophan zipper disclosed in 98 (10): 5578-5583, template-fixed ⁇ -hairpin mimetic disclosed in WO 2005/047503, disclosed in US Pat. No. 5,077,979. ⁇ -hairpin variants are well known. In addition, — peptides with hairpin conformation are described by Smith & Regan (1995) Science 270: 980-982; Chou & Fassman (1978) Annu. Rev. Biochem.
  • a tryptophan zipper is used.
  • the tryptophan zipper used in the present invention is represented by the following general formula (I):
  • 3 ⁇ 4 is Ser or Gly-Glu
  • X 2 and X ' 2 are independently of each other Thr, His, Val, lie, Phe or Tyr
  • X 3 is Trp or Tyr
  • X4 is Type I , Type ⁇ ′, Type ⁇ , type ⁇ 'or type m or type ⁇ turn sequence
  • 3 ⁇ 4 is Trp or Phe
  • 3 ⁇ 4 is Trp or Val
  • X 7 is Lys or Thr-Glu.
  • 3 ⁇ 4 is Ser or Gly-Glu, and ⁇ '2 is independently of each other Thr, His or Val, 3 ⁇ 4 is Trp or Tyr, is Type I, Type ⁇ , Type ⁇ Or type ⁇ 'turn sequence, 3 ⁇ 4 is Trp or Phe, 3 ⁇ 4 is Trp or Val, and X? Is Lys or Thr-Glu. Even more preferably, 3 ⁇ 4 in Formula I is Ser or Gly— Glu,
  • X 2 and X ' 2 are independently of each other Thr, His or Val, 3 ⁇ 4 is Trp, is type I, type ⁇ , type ⁇ or type ⁇ ' turn sequence, 3 ⁇ 4 is Trp, 3 ⁇ 4 is Trp, X 7 is Lys or Thr-Glu.
  • 3 ⁇ 4 is ser, 3 ⁇ 4 and X ' 2 are Thr, 3 ⁇ 4 is Trp, is a type ⁇ or type ⁇ ' turn sequence, 3 ⁇ 4 is Trp, 3 ⁇ 4 is Trp 3 ⁇ 4 is Lys.
  • Xl is Ser, 3 ⁇ 4 and X'2 are Thr, 3 ⁇ 4 is Trp, X4 is type ⁇ turn sequence (ENGK) or type ⁇ 'turn sequence (EGNK), 3 ⁇ 4 is Trp, 3 ⁇ 4 is Trp, and X 7 is Lys.
  • amino acid sequences of tryptophan zippers suitable for the present invention are described in SEQ ID NOs: 1 to 3 and 5 to 10.
  • ⁇ -hairpin peptides usable as structural stabilization sites in the present invention are peptides derived from B1 domaine of protein G, ie GB1 peptides.
  • the structural stabilization site is preferably represented by the following general formula ⁇ :
  • 3 ⁇ 4 is Arg, Gly-Glu or Lys-Lys
  • X 2 is Gin or Thr
  • 3 ⁇ 4 is type I, type ⁇ , type ⁇ , type ⁇ or type m or type ⁇ turn sequence
  • X4 is Gin, Thr- Glu or Gln-Glu.
  • the structural stabilization site of the general formula ⁇ is
  • 3 ⁇ 4 is Gly-Glu or Lys-Lys
  • X 2 is type I, type ⁇ , type ⁇ , type ⁇ 'or type m or type ⁇ turn sequence
  • 3 ⁇ 4 is Thr-Glu or Gln-Glu.
  • Exemplary amino acid sequences of GB1 ⁇ -hairpins suitable for the present invention are described in SEQ ID NO: 4 and 14 to 15 sequences.
  • the structural stabilization site is preferably represented by the following general formula m:
  • 3 ⁇ 4 is Lys or Lys— Lys, 3 ⁇ 4 is Trp or Tyr, 3 ⁇ 4 is Val or
  • Thr is, type I , type ⁇ , type ⁇ , type ⁇ or type m or Type ⁇ turn sequence, 3 ⁇ 4 is Trp or Ala, 3 ⁇ 4 is Trp or Val, and X 7 is Glu or Gln-Glu.
  • ⁇ -hairpin peptide that can be used as a structural stabilization site in the present invention is represented by the following general formula IV:
  • 3 ⁇ 4 is Lys-Thr or Gly
  • 3 ⁇ 4 is Trp or Tyr
  • 3 ⁇ 4 is type I, type ⁇ , type II, type ⁇ 'or type m or type ⁇ turn sequence, and is Thr-Glu or Gly.
  • Exemplary amino acid sequences of ⁇ -hairpins of Formulas III and IV are described in SEQ ID NOs: 11-12, 15, and 16-19.
  • a -sheet connected by a linker can be used as the structural stabilization site.
  • two or more amino acid strands, which are parallel or antiparallel, preferably antiparallel, are in an extended form, and hydrogen bonds are formed between the amino acid strands.
  • ⁇ -sheet structure two adjacent ends of two amino acid strands are connected by a linker.
  • linker various turn-sequences or peptide linkers described above may be used. If the turn-sequence is used as a linker, the ⁇ -turn sequence is most preferred.
  • leucine zippers or leucine zippers linked by linkers may be used as structural stabilization sites.
  • Leucine zippers are conserved peptide domains that cause parallel dimerization of two ⁇ -chains and are generally dimerized domains found in proteins involved in gene expression (“Leucine scissors”. Glossary of Biochemistry and Molecular Biology ( (1997) .Ed. David M. Glick.London: Portland Press; Lands chulz WH, et al. (1988) Science 240: 1759-1764).
  • Leucine zippers generally comprise a heptad repeat sequence, with the leucine residues located at the fourth or fifth.
  • leucine zippers that may be used in the present invention include the amino acid sequence of LEALKEK, LKALEKE, LKKLVGE, LEDKVEE, LENEVAR or LLSKNYH.
  • Leucine used in the present invention Specific examples of zippers are described in SEQ ID NO: 39.
  • Each half of the leucine zipper consists of short ⁇ -hexens with direct leucine contact between the ⁇ -chains.
  • the leucine zipper in the transcription factor generally consists of a hydrophobic leucine zipper site and a basic site (site that interacts with the main groove of the DNA molecule). When the leucine zipper is used in the present invention, the basic site is not necessarily required.
  • two adjacent ends of two amino acid strands may be linked by a linker.
  • a linker various turn-sequences or peptide linkers described above may be used, and preferably, a peptide linker that does not affect the structure of the leucine zipper is used.
  • Random amino acid sequences are joined to both ends of the structure stabilization site described above.
  • the random amino acid sequence forms Cytokine-target binding site I and Cytokine-target binding site ⁇ .
  • One of the biggest features of the present invention is to prepare a peptide binder in a bipodal manner by connecting Cytokine-target binding site I and Cytokine-target binding site ⁇ to both ends of the structure stabilization site. Cytokine-target binding site I and Cytokine-target binding site ⁇ cooperatively bind to the target, thereby greatly increasing affinity for Cytokine.
  • the amino acid number n of the cytokine-target binding site I is not particularly limited, preferably an integer of 2-100, more preferably an integer of 2-50, even more preferably an integer of 2-20, most preferred Preferably an integer of 3-10.
  • the number of amino acids m of the cytokine-target binding site ⁇ is not particularly limited, and is preferably 2-100 and an integer, more preferably an integer of 2-50, even more preferably an integer of 2-20, most preferably Preferably an integer of 3-10.
  • Cytokine-target binding site I and Cytokine-target binding site ⁇ may each contain different or identical numbers of amino acid residues. Cytokine-target binding site I and Cytokine-target binding site ⁇ may include different or identical amino acid sequences, and preferably include different amino acid sequences. The amino acid sequence contained in Cytokine-target binding site I and / or Cytokine-target binding site ⁇ is a linear amino acid sequence or a cyclic amino acid sequence.
  • At least one amino acid residue among the amino acid sequences included in the Cytokine-target binding site I and / or the Cytokine-target binding site ⁇ is an acetyl group, a fluorenyl methoxy carbonyl group, Formyl, palmitoyl, myristyl, stearyl or polyethylene glycol (PEG).
  • Cytokine-BPB of the present invention which is bound to a biological target molecule, can be used for the regulation of physiological responses in vivo, detection of substances in vivo, imaging of in vivo molecules, and targeting for drug delivery, and also as an escort molecule.
  • a cargo is added to the structure stabilization site, the Cytokine-target binding site I or the Cytokine-target binding site ⁇ (more preferably, the structure stabilization site, even more preferably the linker of the structure stabilization site).
  • the cargo include, but are not limited to, labels, chemicals, biopharmaceuticals or nanoparticles that generate detectable signals.
  • Labels that generate the detectable signal include T1 contrast (eg Gd chelate compounds), T2 contrast (eg superparamagnetics (eg magnetite, Fe 3 0 4 , Y-Fe 2 0 3 , manganese ferrite, cobalt) Ferrites and nickel ferrites)), radioisotopes (e.g., 15 0, 13 N, P 32 , S 35 , 44 Sc, 45 Ti, 118 1, 136 La, 198 T1, 200 ⁇ 1, 205 Bi and 206 Bi) , Including but not limited to fluorescent materials (fluorescein, phycoerythrin, rhodamine, lissamine, and Cy3 and Cy5), chemilumines, magnetic particles, mass labels or electron-dense particles It doesn't happen.
  • T1 contrast eg Gd chelate compounds
  • T2 contrast eg superparamagnetics (eg magnetite, Fe 3 0 4 , Y-Fe 2 0 3 , manganese
  • Cytokine—target binding site I and / or Cytokine-target binding site ⁇ comprises an amino acid sequence that binds to Cytokine.
  • Cytokine to which the BPB molecule of the present invention binds includes various Cytokines known in the art, preferably TNF (tumor necrosis factor) alpha, TNF beta, inter leukin-lO (IL-lO), interferon beta (IFN
  • Cytokine-BPB of the present invention binds to cytokine and acts to inhibit the action of cytokine.
  • the bipodal peptide binder of the present invention is typically referred to as "one strand of the N-Cytokine-target binding site 1_structural stabilization site-linker-the other strand of the structural stabilization site-Cytokine-target binding site ⁇ -C" Has a construct of
  • between the Cytokine-target binding site I and one strand of the structure stabilization site and / or between the other strand of the structure stabilization site -Cytokine-target binding site ⁇ in the Cytokine-bipodal peptide binder of the present invention Includes a structure influence inhibiting region that blocks the cross-structural effects between the cytokine-target binding site and the structure stabilization site.
  • At the site of rotation are amino acids that are relatively free of rotation of ⁇ and ⁇ in the peptide molecule.
  • the amino acids having relatively free rotation of and ⁇ are glycine, alanine and serine. 1-10, preferably 1-8, more preferably 1-3 amino acid residues may be located in the structure influence inhibitory site.
  • the library of Cytokine-bipodal peptide binders of the present invention having the constructs described above can be obtained by various methods known in the art.
  • the Cytokine-bipodal peptide binder will have a random sequence, which has no sequence preference or designation (or immobilization) at any position of Cytokine-target binding site I and / or Cytokine-target binding site ⁇ . It means no amino acid residues.
  • a library of Cytokine-bipodal peptide binders may be prepared on solid phase supports (eg, polystyrene or polyacrylamide resins). It can be constructed according to the split-synthesis method carried out (Lam et al. (1991) Nature 354: 82; WO 92/00091).
  • a library of bi Cytokine- podal peptide binder is constructed by a cell surface display (display surface ce ll) scheme (e.g., phage display, bacteria display or yeast display).
  • the library of Cytokine-bipodal peptide binder may be prepared through a display method based on plasmid, bacteriophage, phagemid, yeast, bacteria, mRNA or ribosomes.
  • Phage display is a technique for displaying various polypeptides in the form of proteins fused to coat proteins on the surface of the phage (Scott, JK and Smith, GP (1990) Science 249: 386; Sambrook, J. et al., Molecular Cloning. A Laboratory Manual, 3rd ed.Cold Spring Harbor Press (2001); Clackson and Lowman, Phage Display, Oxford University Press (2004). Random peptides are displayed by fusing the gene to be expressed in gene ⁇ or gene uptake of filamentous phage (eg, M13).
  • Phageimide may be used for the fiji display.
  • Phageimide is a plasmid vector with one copy of the bacterial origin of replication (eg, ColEl) and the intergenic site of the bacteriophage. DNA fragments cloned in this phagemid are propagated like plasmids.
  • a preferred embodiment of the present invention comprises the following steps: (i) phage coat protein (eg, gene m of filamentous phage such as M13 or A fusion gene in which a gene encoding a gene free coat protein) and a gene encoding a bipodal tempide binder are fused; And constructing a library of expression vectors comprising transcriptional regulatory sequences (eg, lac promoters) operably linked to the fusion gene; (ii) introducing said expression vector library into a suitable host cell; (Hi) culturing the host cell to form a recombinant phage or phagemid virus particle so that the fusion protein is displayed on the surface; (iv) Contacting the cytokine molecule with the viral particle to bind the particle to the target molecule; And (V) separating particles not bound to the Cytokine molecule.
  • phage coat protein eg, gene m of filamentous phage such as M13 or A fusion gene in which a gene encoding
  • the method of producing an expression vector comprising a bipodal peptide binder gene may be carried out according to methods known in the art.
  • known phagemid or phage vector e.g. pIGT2, fUSE5, fAFFl, fd-CATl, m663, fdtetDOG, pHENl, pComb3, pComb8, pCANTAB 5E (Pharmacia) LamdaSurfZap, pIF4, PM48, PM52, PM54, fdH) And p8V5
  • an expression vector can be prepared.
  • phage display methods are performed using filamentous phage, lambda phage display (W0 95/34683; US Pat. No. 5,627,024), T4 phage display (Ren et al. (1998) Gene 215: 439; Zhu (1997) ) CAN 33: 534) and T7 phage display (US Pat. No. 5,766,905) can also be used to build a library of bipodal peptide binders.
  • the method of introducing the vector library into a suitable host cell can be carried out according to a variety of transformation methods, most preferably according to the electroporation method (see US Pat. Nos. 5,186,800, 5,422,272, 5,750,373), suitable hosts are gram negative bacterial cells such as E. coli, and suitable E. coli hosts are JM101, E. coli K12 strain 294, E. coli strain W3110 and E. coli XL-lBlue. (Stratagene), including but not limited to. Host cells are preferably prepared as competent cells prior to transformation (Sambn ik, J. et al., Molecular Cloning. A Laboratory Manual 3rd ed.
  • helper phage phages include, but are not limited to, Ex helper phage, M13-K07, M13-VCS, and R408.
  • the selection of virus particles binding to the biological target molecule can typically be carried out via a biopanning process (Sambrook, J. et al., Molecular Cloning. A Laboratory Manual, 3rd ed. Cold Spring Harbor Press (2001); Clackson and Lowman, Phage Display, Oxford University Press (2004).
  • the present invention provides a nucleic acid molecule encoding the above-described Cytokine-bipodal peptide binder.
  • the present invention provides a vector for expression of a Cytokine-bipodal peptide binder comprising a nucleic acid molecule encoding a Cytokine-bipodal peptide binder.
  • the present invention provides a transformant comprising a vector for expression of a Cytokine-bipodal peptide binder.
  • nucleic acid molecule is meant to encompass DNA (gDNA and cDNA) and RNA molecules inclusively, and the nucleotides, which are the basic structural units in nucleic acid molecules, are naturally modified nucleotides, as well as modified sugar or base sites.
  • Analogues Schott al.
  • the vector of the present invention is a powerful promoter capable of transferring transcription to the nucleic acid molecule in addition to the nucleic acid molecule encoding the Cytokine-bipodal peptide binder (e.g., tac promoter, lac promoter, 7adJV5 promoter , Ipp promoter, 3 ⁇ 4 ⁇ promoter, p R x promoter, rad promoter, amp promoter, recA promoter, SP6 promoter, trp promoter and T7 promoter, etc.), ribosomal binding site and transcription / detox termination sequence for initiation of translation Include.
  • the Cytokine-bipodal peptide binder e.g., tac promoter, lac promoter, 7adJV5 promoter , Ipp promoter, 3 ⁇ 4 ⁇ promoter, p R x promoter, rad promoter, amp promoter, recA promoter, SP6 promoter, trp promoter and T7 promoter, etc.
  • the vector of the invention is a signal on the 5'-direction of the nucleic acid molecule encoding the Cytokine-bipodal peptide binder. Sequences (eg, pelB) may be further included.
  • the vector of the present invention further comprises a tagging sequence (eg, myc tag) for confirming that the bipodal peptide binder is well expressed on the surface of the phage.
  • the vector of the invention comprises a gene encoding a phage coat protein, preferably a gene of filamentous phage such as M13 or a gene VI coat protein.
  • the vector of the invention is the origin of replication of bacteria (e.g.
  • the vector of the present invention may include antibiotic resistance genes commonly used in the art as a selection marker, for example, ampicillin, gentamicin, carbenicillin, chloramphenicol, streptomycin, kanamycin, geneticin, neo Resistance genes for mycin and tetracycline.
  • the transformants of the present invention are preferably Gram-negative bacterial cells such as E. coli, and suitable E. coli hosts include JM101, E. coli K12 strain 294 ; E. coli strain W3110 and E. coli XL-lBlue (Stratagene), including but not limited to:
  • the method of carrying the vector of the present invention into a host cell includes the CaCl 2 method (Cohen, SN et al., Proc. Natl. Acac. Sci. USA, 9: 2110-2114 (1973)), one method (Cohen, SN et al., Proc. Natl. Acac. Sci. USA, 9: 2110-2114 (1973); and Hanahan, D., J. Mol. Biol., 166: 557-580 (1983)) and electroporation methods (US Pat. Nos. 5,186,800, 5,422,272, 5,750,373) and the like.
  • Cytokine-bipodal peptide binders of the present invention exhibit very low levels (e.g., nM levels) of 3 ⁇ 4 values (dissociation constants), providing peptides that exhibit very high affinity to Cytokine molecules.
  • bipodal peptide binders exhibit about 10 2 -10 5 times (preferably about 10 3 -10 4 times) high affinity compared to binders made in a monopodal manner.
  • the Cytokine-bipodal peptide binder of the present invention not only has a use as a medicament, but also detects substances in vivo, in vivo molecular imaging, phosphorus It can be used to target cell imaging and drug delivery in vitro, and can also be used as an escort molecule.
  • the present invention provides Cytokine-BPB that specifically binds to Cytokine.
  • the Cytokine-bipodal peptide binders of the present invention thus exhibit very low levels (eg, nM levels) of K D values (dissociation constants), resulting in very high affinity to the target.
  • Cytokine-BPB of the present invention can transport various substances into cell surface or cells based on Cytokine binding and specificity.
  • La shows a schematic diagram of a bipodal-peptide binder and Cytokine—BPB including ⁇ -hairpin as a structural stabilization site.
  • Lb shows a schematic diagram of Cytokine-BPB containing ⁇ -sheets linked by linkers as structural stabilization sites.
  • Figure lc shows a schematic of Cytokine-BPB containing leucine zippers linked by linkers as structural stabilization sites.
  • FIG. ID shows a schematic of Cytokine-BPB comprising leucine-rich motifs linked by linkers as structural stabilization sites
  • FIG. 2 shows a strategy for cloning Cytokine-BPB libraries.
  • the pelB signal sequence, myc tag is a tagging sequence to confirm that the target gene is well expressed on the surface of the phage.
  • the lac promoter was used as a promoter.
  • Figure 3 shows the results of TNF- a cytotoxic inhibition assay of TNFa-BPB.
  • Figure 4a is a result of measuring the affinity of a specific bipodal peptide binder that binds to the pyronectin ED-B protein.
  • Figure 4b is the result of measuring the affinity for the demonstration of the synergistic effect of the bipodal peptide binder BPB.
  • FIG. 7 shows biopanning results for VEGF proteins performed to select bipodal peptide binders specific for VEGF.
  • BPBIVEGF BPB2 VEGF
  • BPB3 VEG F BPB4vE GF
  • Figure 9 shows in cells of specific bipodal peptide binders that bind VEGF.
  • Beta-Fl (5'-TTCTATGCGGCCCAGCTGGCC
  • Beta-Bl (5'- AACAGTTTCTGCGGCCGCTCCTCC ⁇ 00 ( ⁇ ) 6 ⁇ 000 ⁇ 00 ⁇ 6 ⁇ 00 ⁇ 000 ⁇ -3 ') (N is A, T, G or C; K is G or T; M is C or A).
  • E. coli XL1-BLUE cells (American Type Culture Collection, Manassas, USA) were plated on LB agar-plates. After the inoculating colonies grown in an agar plate medium in LB medium with 5 heunhap at 37 ° C at a rate of 200 rpm and incubated for one day. Cultured 10 cells were inoculated in 2 LB medium and incubated in the same manner until the absorbance was 0.3-0.4 at a wavelength of 600 nm. The incubated flask was left on ice for 30 minutes, then centrifuged at 4.000 ⁇ g for 20 minutes at 4 ° C. to remove all supernatants except the sunk cells and suspended in 1 sterile sterile distilled water.
  • Electroporation was performed by dispensing 25 // 100 of phagemid vector 12 and 100 / ⁇ reacted with insert 2.9 fig of insert DNA on a bipodal peptide binder.
  • the competent cells were dissolved on ice, mixed with 200 ⁇ of competent cells and mixed with a solution 4 ⁇ , and then placed in a cooled 0.2 cm cuvette and placed on ice for 1 minute.
  • An electroporator (BioRad, Hercules, CA) was programmed at 200 ⁇ at 25 uF and 2.5 kV, drained the prepared cuvettes, placed in the electroporator and pulsed (time constant is 4.5-5 msec). Thereafter immediately placed in 1 LB medium containing 20 mM glucose prepared at 37 ° C.
  • a total of 25 cells obtained were transferred to a 100 ml test tube. After incubation at 200 rpm at 37 ° C. for one hour, the cells were incubated with 10 ⁇ dilution to measure the number of libraries and plated in ampicillin agar medium. The remaining cells in 1 LB of 20 mM glucose and 50 / / ⁇ Ampicillin was added and incubated for one day at 30 ° C. After centrifugation at 4 ° C. at 4,000 ⁇ g for 20 minutes, the supernatant except for the precipitated cells was removed, resuspended in LB of 40 1 and glycerol was added at a final concentration of 20% or higher and stored at -80 ° C. . Recombinant Phage Production and PEG Precipitation in Libraries
  • Recombinant phage was produced in a bipodal peptide binder library stored at -80 ° C. Ampicillin (50 ⁇ / ⁇ ) and 20 mM glucose were added to a 100 1 LB medium in 500 flasks, and then library 1 stored at -80 ° C was added at a rate of 150 rpm at 37 ° C for one hour. Incubation was carried out in combination. Ex helper phage (Ig therapy, Chuncheon, Korea) of lxiO ⁇ pfu was added thereto and incubated under the same conditions for one hour.
  • helper phage Ig therapy, Chuncheon, Korea
  • This mixture was prepared by mTNFa insert by PCR reaction (94 5 min, 30 cycle: 55 ° C 30 sec and 72 0 C 1 min, 94 0 C 30 sec) and purified using a PCR purification kit.
  • restriction enzyme treatment was performed on the mTNFa Insert gene and the pET28b vector.
  • Colonies grown on agar plate medium were inoculated into 5 ml of LB medium, incubated at 37 rpm at 200 rpm for one day, and then purified by plasmid preparation using a plasmid preparation kit for sequencing. Check for success. Human TNFa was also inserted into the pET28b vector in the same manner.
  • ImM i sopr opy 1 - ⁇ -Dt hi oga 1 ac t opyr anos i de (I PTG) 3 ⁇ 4 ⁇ was added and mixed at 37 0 C at 200 rpm for 8 hours. Centrifugation was performed at 4,000 g for 20 minutes to remove all supernatants except the sunk cells and resuspended in lysis buffer (50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 5 mM imidazole) at -80 ° C. After storage for 1 day, dissolve E. coli using Sonicator, and remove 1 g of raw ginseng for 1 hour and attach the supernatant to Ni-NTA affinity resin.
  • lysis buffer 50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 5 mM imidazole
  • N-terminal His-tag TNFa protein was collected using Elution buffer (50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 300 mM imidazole). The protein thus collected is subjected to gel filtration using a superdex75 column and PBS (pH7.4) buffer to collect high purity TNFa protein,
  • Elution buffer 50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 300 mM imidazole.
  • the protein thus collected is subjected to gel filtration using a superdex75 column and PBS (pH7.4) buffer to collect high purity TNFa protein
  • Biopanning was performed for TNF- ⁇ as a representative protein of cytokine.
  • Fibronectin ED-B was selected as a model protein for confirming the basic function of ⁇ and biopanning was also performed.
  • Biopanning was performed on the BPB (Bipodal-peptide binder) library prepared in Example 1 for each protein at five times, and The output phage / input phage ratio of the phage peptides recovered in the panning step was determined.
  • the protein (5 / g /) was placed in 10 wells of 96 well ELISA folate (50 ⁇ ), and then allowed to stand overnight at 4 ° C., and blocked for 2 hours at room temperature using 2% BSA the next day. After that, the solution was discarded and washed three times with 0.1% PBST.
  • the bipodal peptide binder recombinant phage containing solution 800 ⁇ and 10% BSA 200 ⁇ were mixed, transferred to 10 wells bound to the GPR 39 protein, and allowed to stand at room temperature for 1 hour.
  • the mixture was incubated for one day at a speed of 200 rpm. Cultures were centrifuged at 4,000> ⁇ g, 20 min and 4 ° C. To the supernatant was added 8 m £ of 5x PEG / NaCl [20% PEG (w / v) and 15% NaCl (w / v)] and then left at 4 ° C. for 1 hour. After centrifugation, the PEG solution was completely removed and the phage peptide pellets were dissolved in 1 PBS solution and used for the second biopanning. The same method was used for each panning step, but the washing process was increased 20 times and 30 times (0.1% PBST), respectively, step by step.
  • the culture was centrifuged at l, 000Xg for 10 minutes, then the supernatant was removed and the precipitated cells were resuspended in 1 LB liquid medium containing ampicillin (50 g / mt) and kanamycin (25 «g / mO). The mixture was incubated for one day at a speed of 200 rpm at ° C. The culture solution was centrifuged at 10,000 ⁇ g, 20 minutes and 4 ° C. to recover the supernatant, and then skim milk was added and used for phage peptide search.
  • Example 5 Binding Assays A bipodal peptide binder peptide specific to ED-B overlapped in DNA sequencing was synthesized (Anigen, Korea). Affinity was measured using BIAcore X (Biacore AB, Uppsala, Sweden). ED-B was immobilized with as much as 2,000 RU of Biotin-EDB on a Straptavidin SA chip (Biacore).
  • TNF-a-BPP synthesized TNF-a was performed using L929 fibroblast, a TNF-a sensitive cell. After 10 5 L929 cells were placed in a 96 well plate, after 12 hours, TNF- ⁇ and TNF-a-BPB were treated with 5 uM, and after 20 hours, MTT solution was used to measure the cytotoxicity.
  • the structure stabilization site of the bipodal peptide binder As the structure stabilization site of the bipodal peptide binder, a stable beta-hairpin motif was used.
  • tryptophan zippers (Andrea et al., Proc. Natl. Acad. Sci. 98: 5578-5583 (2001)), which stabilize the beta-hairpin motif structure by the interaction of tryptophan-tryptophan amino acids, were used.
  • Variable regions were created in two portions by randomly arranging six amino acids in each of the N- and C-terminal portions of the tryptophan zipper (FIG. La).
  • This is called a bipodal peptide binder and has variable regions on both sides so that it can be cooperatively attached to the antigen and thus have high affinity and specificity.
  • the structure stabilization site of the bipodal peptide binder may be configured in various ways as shown in FIGS.
  • the bipodal peptide binder library was subjected to biopanning three to five times for fibronectin ED-B or TNF- ⁇ protein and the ratio of output phage / input phage of phage peptides recovered at each panning step was determined (Table la And lb).
  • Example 9 Phage Peptide Search (Phase ELISA) Specific to the Target and Sequencing Phage recovered at the highest output / input ratio during the panning step of each library was obtained in plaque form. ELISA was performed on BSA after amplifying 60 phages from each plaque. Clones with higher absorbance than BSA were selected and requested for DNA sequencing. From this a peptide sequence specific to each overlapped protein was obtained (Table
  • TNFa-BPB Inhibition experiment of TNFa-BPB was performed using L929 cells, which are TNF-a sensitive cells. TNFa-BPB can be seen that 5 uM administered with TNF-a significantly inhibited athetosis (FIG. 3).
  • Example 11 Determination of the affinity of fibronectin ED-B
  • the peptide for fibronectin ED-B was synthesized and affinity was measured using the SPR Biacore system (Biacore AB, Uppsala, Sweden). As a result of measuring affinity for fibronectin ED-B, peptide 1 showed 620 nM, peptide 2 showed 75 nM, and peptide 3 showed 2,5 ⁇ (FIG. 4A).
  • Example 12 Confirmation of the synergistic effect by SPRCSurface Plasmon Resonance
  • a peptide was obtained by synthesizing a peptide in which only one portion of the N- and C-terminus of the peptide 2 to ED-B of Table 2a having the best affinity was synthesized.
  • the N-terminal portion had 592 ⁇ and the C-terminal portion showed 12.8 ⁇ (FIG. 4B).
  • the synergistic effect exhibited by having bipodal in the bipodal peptide binder proved to be an affinity of 43 nM (FIG. 4A).
  • Example 13 Binding Assays for Other ⁇ -Hairpins
  • peptides were synthesized to have N-terminal sequences (HCSSAV) and C-terminal sequences (IIRLEQ) of Peptide2 that specifically bind ED-B to other ⁇ -hairpin backbones, GBlm3 and HP7 (Anigen). , Korea). That is, the sequence of the bipodal peptide binder including tryptophan zipper is HCSSAVGSWTWENGK T KGI IRLEQ, the bipodal peptide binder including GBlm3 is HCSSAVG KWTYNPATGKFTVQEGnRLEQ, and the bipodal peptide binder including HP7 is HCSSAVGKTWNPA GKWTEGIQ.
  • HCSSAV N-terminal sequences
  • IIRLEQ C-terminal sequences
  • IIRLEQ C-terminal sequence of peptide 2 that specifically binds ED-B to the leucine zipper as a structural stabilization site.
  • IRLEQGGSMKQLEDKVEELLSK YHLENEVARLKKLVGER peptide was synthesized (Anigen, Korea). The two peptides were dimerized and then BIAcore X (Biacore AB, Affinity was measured using Uppsala, Sweden).
  • the leucine zipper showed an affinity of 5 ⁇ , which is lower than the similar affinity of tryptophan zipper (43 ⁇ ), while leucine zipper also functions as a structural stabilizing site for bipodal peptide binders. It can be seen that (FIG. 6).
  • IPTG isopropyl- ⁇ -D-kiogallactopyranoside
  • NTA affinity resin Elpisbio, Dae j eon, Korea
  • Illution buffer 50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 300 mM imidazole
  • Trx-VEGF121 Obtained by eluting the Trx-VEGF121 protein.
  • VEGF 121 was obtained by cutting between VEGF and Trx (thioredoxin reductase) with thrombin. Bio panning method of VEGF
  • VEGF vascular endothelial growth factor
  • Recombinant phage that specifically binds to VEGF protein was tested for specificity using ELISA.
  • ELISA ELISA-Linked Immunosorbent assay
  • each protein was placed in a well of 5 5 50 ⁇ , washed three times with 0.13 ⁇ 4 PBST (Tween-20) the next day and blocked for 2 hours at room temperature using 2% BSA. Discard all and wash three times with 0.1% PBST.
  • Recombinant phage with peptides of the present invention were well mixed with 2% BSA and dispensed into wells containing 10 proteins bound by 100 ⁇ for 2 hours at 27 ° C. It was political.
  • a bipodal peptide binder peptide specific to VEGF overlapped in DNA sequencing was synthesized (Anigen, Korea). Affinity was measured using BIAcore XCBiacore AB, Uppsala, Sweden). VEGF was fixed to CM5 chip (Biacore) using EDC / NHS. PBS (pH 7.4) was used as the running buffer, and the flow was measured at various concentrations while holding at 30 ⁇ per minute, and the affinity was calculated using BIAevaluation software (Biacore AB, Uppsala, Sweden).
  • VEGF activity inhibition test (HUVEC proliferation assay) 1% of HUVEC cells (Human Umbilical Vein Endothelial Cell, ATCC)
  • the bipodal peptide binder library was subjected to biopanning four times for VEGF and the ratio of output phage / input phage of phage peptides recovered in each panning step was determined (FIG. 7).
  • Target specific phage peptide search phage ELISA
  • the peptide for VEGF was synthesized and affinity was measured using SPR Biacore system (CBiacore AB, Uppsala, Sweden).
  • the affinity for VEGF is as follows (Table 4). Table 4
  • VEGF121 BPB 1 VEGF 3.2 x 10 5 1.9 x ⁇ 2 60 x 10— 9
  • VEGF121 BPB2 ⁇ 1.2 x 10 5 1.1 x 10— 2 90 x 10_ 9
  • each BPB specific for VEGF has specificity for VEGF.
  • VEGF activity inhibition test (HUVEC growth assay)
  • HUVEC proliferation assay was attempted to determine whether BPBVEGF can inhibit VEGF activity in HUVEC cells.
  • VEGF is a growth hormone that promotes the growth of epithelial cells. Blocking it can inhibit the growth of epithelial cells. As can be seen in Figure 9, when treated with 20 ⁇ , 10 ⁇ and 5 ⁇ BPBVEGF completely inhibited the activity of VEGF at 20 ⁇ . Among them, BPB3VEGF had the best IC 50 activity of 5 ⁇ .

Abstract

The present invention relates to an RTK-bipodal peptide binder specifically binding to RTK, comprising: (a) a structure stabilizing region comprising parallel, antiparallel, or parallel and antiparallel amino acid strands in which interstrand non-covalent bonds are formed; and (b) an RTK-target binding region I and an RTK-target binding region II which bond to both terminals of the structure stabilizing region and which comprise n and m amino acids randomly selected, respectively. The RTK-bipodal peptide binder of the present invention exhibits a very low KD value (dissociation constant) (for example, nM level) relative to RTK and therefore exhibits a very high affinity toward an RTK target. The RTK-bipodal peptide binder of the present invention may have a use as a medicine, may be used for in vivo molecular imaging and drug delivery targeting, and may be very useful as an escort molecule.

Description

【명세서】  【Specification】
【발명의 명칭】  [Name of invention]
Cytokine에 특이적으로 결합하는 Cytokine_BPB 【기술분야】  Cytokine_BPB that specifically binds to cytokine
본 발명은 Cytokine 에 특이적으로 결합하는 Cytokine_BPB 에 관한 것이다.  The present invention relates to Cytokine_BPB which specifically binds to Cytokine.
【배경 기술】 [Background technology]
항체는 B 세포가 생산하는 혈장단백질의 일종인 면역글로불린 단백질로써 외부에서 들어온 항원의 특정부위를 특이적으로 인식하여 결합함으로써 항원을 비활성화하거나 무력화시킨다. 이러한 항원 -항체 반웅의 특이성과 고도의 친화도 및 수천만 종류의 항원을 구별할 수 있는 항체의 다양성을 웅용하여 오늘날 진단제와 치료제 등을 포함하는 많은 종류의 항체 제품이 출현하게 되었다. 현재 FDA 에서는 21 개의 단일클론항체를 승인하였으며 리턱시맵 (Rituximab) 및 헤르셉틴 (Herceptin)과 같은 항체는 다른 치료에서 전혀 반웅을 보이지 않던 환자들의 50% 이상에서 효과를 보인바 있으며 실질적으로 여러 연구에서 단일클론항체를 이용하여 림프종, 대장암 또는 유방암 등에 성공적인 임상치료를 보여주고 있다. 치료용 항체의 전체 시장 규모는 2004 년 100 억 달러 규모에서 2010 년에는 300 억 달러로 연평균 20¾의 성장률을 보일 것으로 추정하고 있으며, 그 시장 규모는 기하급수적으로 증가할 것으로 추정되고 있다. 항체를 이용한 신약개발이 활발해지는 이유는 약품의 개발기간이 짧으며 투자비용이 작고 부작용을 쉽게 예측할 수 있기 때문이다. 또한 항체는 생약이어서 인체가 거의 영향을 받지 않으며 체내에서의 반감기가 저 분자량 약품에 비하여 압도적으로 길어서 환자에게 친화적이다. 이러한 유용성에도 불구하고 인간에서 단일클론항체는 외래 항원으로 인식하여 심한 알레르기 반웅 또는 과민반응을 일으키기도 한다. 또한, 이러한 항암 기능의 단클론 항체를 임상적으로 사용할 경우 생산 단가가 높기 때문에 치료제로서의 가격이 급격히 상승한다는 단점이 있으며, 항체를 배양하는 방법 및 정제 방법 등 광범위한 분야의 기술들이 각종 지적 소유권에 의해 보호받고 있기 때문에 비싼 라이센싱비를 지불해야 한다 . Antibodies are immunoglobulin proteins, a type of plasma protein produced by B cells, that specifically inactivate and inactivate antigens by specifically recognizing and binding to specific sites of antigens. The specificity and high affinity of these antigen-antibody reactions and the diversity of antibodies that can distinguish tens of millions of antigens have led to the emergence of many types of antibody products, including diagnostics and therapeutics. Currently, the FDA has approved 21 monoclonal antibodies, and antibodies such as Rituximab and Herceptin have been effective in more than 50% of patients who have not responded to other treatments. Has demonstrated successful clinical treatment of lymphoma, colon cancer or breast cancer using monoclonal antibodies. The total market size of therapeutic antibodies is estimated to grow at an annual average of 20¾, from $ 10 billion in 2004 to $ 30 billion in 2010, and the market is expected to grow exponentially. The development of new drugs using antibodies is active because the drug development period is short, investment costs are low, and side effects can be easily predicted. In addition, since the antibody is a herbal medicine, the human body is hardly affected, and the half-life in the body is overwhelmingly long compared to low molecular weight drugs, so the patient is friendly. Despite this usefulness, monoclonal antibodies in humans are recognized as foreign antigens and can cause severe allergic reactions or hypersensitivity. In addition, when the anti-cancer monoclonal antibody is used clinically, the production cost is high, and thus the price of the therapeutic agent increases rapidly. The method of culturing the antibody and the purification method, etc. Since a wide range of technologies are protected by various intellectual property rights, expensive licensing fees are required.
따라서 이 문제를 해결하기 위해서 미국을 중심으로 유럽연합에서 항체 대체 단백질 개발이 태동기에 있다. 항체 대체 단백질은 항체와 같이 불변영역과 가변영역을 가질 수 있도록 만든 재조합 단백질로 크기가 작고 안정한 단백질의 일정부분을 무작위 서열의 아미노산으로 바꾸어 라이브러리를 만들고 이를 표적물질에 대해 스크리닝을 하여 높은 친화력과 좋은 특이성을 가진 물질을 찾을 수 있다. 예를 들어 항체 대체 단백질 중 아비머 (avimer)와 아피바디 (af f ibody)는 표적물질에 대해 피코몰 (picomole) 정도의 친화력을 가진 예시가 보고되어 있다. 이런 항체 대체 단백질은 크기가 작고 안정해서 암세포에 깊이 침투 가능하며 일반적으로 면역반웅을 적게 일으킨다고 보'고되어 있다. 그리고 무엇보다도 광범위한 항체 특허 문제에서 벗어 날 수 있으며 박테리아에서 쉽게 대량정제 할 수 있기 때문에 생산단가가 낮아 경제적으로 항체보다 큰 장점을 가진다. 현재 개발된 항체 대체 단백질은 40 개가 있으나 이 중 벤처 회사나 다국적 제약회사에서 상용화를 시도하고 있는 항체 대체 단백잘은 피브로넥틴 타입 ΠΙ 도메인, 리포칼린, LDLR-A 도메인, 크리스탈린, 프로테인 A, 안키린 리피트 (Ankyrin repeat), BPTI 라는 단백질을 이용하고 있으며 타겟에 대한 피코몰에서 수 나노몰정도의 높은 친화력을 가지고 있다. 그 중 애드넥틴 (Adnectin), 아비머, 쿠니츠 (Kunitz) 도메인은 현재 FDA 임상실험이 진행 중이다. Therefore, in order to solve this problem, the development of antibody replacement proteins in the European Union centered on the United States is in the early stage. Antibody-replacement protein is a recombinant protein made to have constant and variable regions like an antibody. A small and stable protein is replaced with a random sequence of amino acids to make a library, which is then screened for the target material, thereby providing high affinity and good Substances with specificity can be found. For example, avimers and affibodies among antibody replacement proteins have been reported to have a picomol affinity for a target substance. These antibodies alternative protein can penetrate deep in the tumor size by a small, stable and has high-beam "and is generally less cause an immune banung. First of all, it is possible to escape from a wide range of antibody patent problems, and because it can be easily purified in large quantities from bacteria, it is economically superior to antibodies because of low production cost. There are currently 40 antibody replacement proteins that have been developed. Among these, antibody replacement proteins that are being commercialized by venture companies or multinational pharmaceutical companies are fibronectin type ΠΙ domain, lipocalin, LDLR-A domain, crystallin, protein A and ankyrin. It uses a protein called repeat (Ankyrin repeat), BPTI, and has a high affinity of several nanomolar to picomolar to target. Adnectin, Avimer, and Kunitz domains are currently undergoing FDA clinical trials.
본 발명은 지금까지의 단백질을 이용한 항체대체 단백질과는 다른 펩타이드 기반 항체대체 단백질에 초점을 맞추었다. 펩타이드는 항체에 비해 적절한 약물동력학, 대량생산성, 낮은 독성, 항원성 억제 및 낮은 생산 단가 등으로 인해 현재 항체 치료제를 대체하여 다양하게 활용되고 있다. 치료용 약으로서의 펩타이드의 장점은 생산 단가가 낮고, 안전성 및 반웅성이 높으며, 특허 로얄티가 상대적으로 저렴하고, 원하지 않는 면역시스템에 덜 노출되어 펩타이드 자체에 대한 항체 생산을 억제 할 수 있으며, 합성을 통한 변형이 쉽고 정확하다는 것이다. 그러나 대부분의 펩타이드는 항체에 비해 특정 단백질 타켓에 대해 낮은 친화력 및 특이성을 보이기 때문에 여러 응용분야에 사용되지 못하는 단점이 있다. 따라서, 펩타이드의 단점을 극복할 수 있는 새로운 펩타이드 기반 항체 대체 단백질 개발에 대한 요구가 당업계에 대두되고 있다. 이에 본 발명자들은 생물학적 타겟 분자에 높은 친화성으로 특이적 결합이 가능한 펩타이드 물질을 개발하고자 노력하였다. 이는 현재 매우 많은 타겟에 대해 보고된 낮은 친화력를 가진 펩타이드를 이용하여 빠른 시간안에 높은 친화성 및 특이성을 가진 신약후보를 만들 수 있는 기술이 될 것으로 기대된다. The present invention focused on peptide-based antibody replacement proteins that are different from antibody replacement proteins using proteins up to now. Peptides have been widely used in place of antibody therapeutics due to proper pharmacokinetics, mass productivity, low toxicity, antigenic inhibition and low production cost compared to antibodies. The advantages of peptides as therapeutic drugs are low production costs, high safety and responsiveness, relatively low patent royalties, and less exposure to unwanted immune systems, which can inhibit the production of antibodies to the peptides themselves. Deformation through is easy and accurate. However, since most peptides exhibit low affinity and specificity for specific protein targets compared to antibodies, they cannot be used for various applications. therefore, There is a need in the art for the development of new peptide-based antibody replacement proteins that can overcome the disadvantages of peptides. Accordingly, the present inventors have tried to develop a peptide material capable of specific binding with high affinity to a biological target molecule. This is expected to be a technology that can produce new drug candidates with high affinity and specificity in a short time using peptides having low affinity reported for a large number of targets.
한편, 사이토카인은 세포들 사이에서 시그널을 운반하는 특정 면역세포에서 분비하는 물질이다. 사이토카인은 면역세포를 자극하여 면역반웅을 활성화 시키거나흑은 억제하는 작용을 한다.  Cytokines, on the other hand, are secreted by certain immune cells that carry signals between cells. Cytokines stimulate immune cells to activate immune response or inhibit black.
사이토카인은 다양한 생물학적 현상 및 병리학적 현상 (예컨대, 자가면역질환)에 관여를 하며, 이를 타겟으로 한 의약들에 대한 연구가 많이 이루어지고 있다.  Cytokines are involved in various biological and pathological phenomena (eg, autoimmune diseases), and many studies have been conducted on medicines targeting them.
본 명세서 전체에 걸쳐 다수의 논문 및 특허문헌이 참조되고 그 인용이 표시되어 있다, 인용된 논문 및 특허문헌의 개시 내용은 그 전체로서 본 명세서에 참조로 삽입되어 본 발명이 속하는 기술 분야의 수준 및 본 발명의 내용이 보다 명확하게 설명된다.  Throughout this specification, a number of papers and patent documents are referred to and their citations are indicated. The disclosures of cited papers and patent documents are incorporated herein by reference in their entirety and the level of the technical field to which the present invention belongs. The content of the present invention is explained more clearly.
【발명의 상세한 설명】 [Detailed Description of the Invention]
본 발명자들은 본 발명자들은 Cytokine 결합성 및 특이성에 기초하여 다양한 물질들을 세포 내 또는 세포 표면에 운반할 수 시스템을 개발하고자 노력하였다. 그 결과, 비교적 리지드 (rigid)한 펩타이드 골격을 가지는 구조안정화 부위의 양 말단에 무작위적 (random)으로 펩타이드를 결합시키고, 이 두 펩타이드를 공동으로 Cytokine 분자에 결합시키는 경우에는 크게 증가된 결합능 및 특이성을 가지는 바이포달 펩타이드 바인더 (BPB)를 얻을 수 있음을 확인함으로써, 본 발명을 완성하게 되었다.  The inventors have sought to develop a system capable of delivering various substances intracellularly or to the cell surface based on Cytokine binding and specificity. As a result, the peptides are randomly bound to both ends of the structural stabilization site having a relatively rigid peptide backbone, and when the two peptides are jointly bound to the cytokine molecule, the binding ability and specificity are greatly increased. By confirming that a bipodal peptide binder (BPB) having a compound can be obtained, the present invention was completed.
따라서 본 발명의 목적은 Cytokine-바이포달 펩타이드 바인더 (Cytokine-BPB)를 제공하는 데 있다.  Accordingly, an object of the present invention is to provide a Cytokine-bipodal peptide binder (Cytokine-BPB).
본 발명의 다른 목적은 Cytokine-바이포달 펩타이드 바인더 (Cytokine-BPB)를 제공하는 데 있다.  Another object of the present invention is to provide a Cytokine-bipodal peptide binder (Cytokine-BPB).
본 발명의 다른 목적 및 이점은 하기의 발명의 상세한 설명, 청구범위 및 도면에 의해 보다 명확하게 된다. 본 발명의 일 양태에 따르면, 본 발명은 다음을 포함하는 Cytokine- 바이포달 펩타이드 바인더 (Cytokine-BPB)을 제공한다: Other objects and advantages of the present invention will become apparent from the following detailed description, claims and drawings. According to one aspect of the invention, the invention provides a Cytokine-bipodal peptide binder (Cytokine-BPB) comprising:
(a) 가닥간 (interstrand) 비공유결합이 형성된 패러럴 (paral lei), 안티패러럴 (antiparallel) 또는 패러럴 (paral lei )과 안티패러럴 (antiparallel) 아미노산 가닥들을 포함하는 구조 안정화 부위 (structure stabilizing region); 및  (a) a structure stabilizing region comprising parallel lei, antiparallel or parallel and antiparallel amino acid strands having interstrand noncovalent bonds; and
(b) 상기 구조 안정화 부위의 양 말단에 결합되어 있고 무작위적으로 선택된 각각 n 및 m 개의 아미노산을 포함하는 Cytokine-타겟 결합 부위 I (Cytokine— target binding region I) 및 Cytokine-타겟 결합 부위 Π (Cytokine-target binding region Π)를 포함하는 Cytokine에 특이적으로 결합하는 Cytokine—바이포달 펩타이드 바인더 .  (b) Cytokine-target binding region I and Cytokine-target binding region Π (Cytokine) bound to both ends of the structural stabilization site and each comprising n and m amino acids selected at random; Cytokine—bipodal peptide binders that specifically bind to Cytokine, including -target binding region Π).
본 발명자들은 본 발명자들은 Cytokine 결합성 및 특이성에 기초하여 다양한 물질들을 세포 내 또는 세포 표면에 운반할 수 시스템을 개발하고자 노력하였다. 그 결과, 비교적 리지드 (rigid)한 펩타이드 골격을 가지는 구조안정화 부위의 양 말단에 무작위적 (random)으로 펩타이드를 결합시키고, 이 두 펩타이드를 공동으로 Cytokine 분자에 결합시키는 경우에는 크게 증가된 결합능 및 특이성을 가지는 바이포달 펩타이드 바인더 (BPB)를 얻을 수 있음을 확인하였다.  The inventors have sought to develop a system capable of delivering various substances intracellularly or to the cell surface based on Cytokine binding and specificity. As a result, the peptides are randomly bound to both ends of the structural stabilization site having a relatively rigid peptide backbone, and when the two peptides are jointly bound to the cytokine molecule, the binding ability and specificity are greatly increased. It was confirmed that a bipodal peptide binder (BPB) having a was obtained.
본 발명의 기본적인 전략은 리지드한 펩타아드 골격의 양 말단에 타겟에 결합되는 펩타이드를 연결하는 것이다. 이 경우 리지드한 펩타이드 골격은 바이포달 펩타이드 바이더의 전체적인 구조를 안정화시키는 작용을 하며, 타겟 결합 부위 I 및 타겟 결합 부위 Π가 타겟 분자에 결합되는 것을 강화시킨다.  The basic strategy of the present invention is to connect peptides that are bound to the target at both ends of the rigid peptad backbone. In this case, the rigid peptide backbone acts to stabilize the overall structure of the bipodal peptide provider and enhances the binding of the target binding site I and the target binding site Π to the target molecule.
본 발명에서 이용 가능한 구조안정화 부위는 패러럴, 안티패러럴 또는 패러럴과 안티패러럴 아미노산 가닥들을 포함하며, 가닥간 (interstrand) 수소결합, 정전기적 상호작용, 소수성상호작용, 반데르 발스 상호작용, 파이 -파이 상호작용, 양이온 -파이 상호작용 또는 이들의 조합에 의한 비공유결합이 형성되는 단백질 구조 모티프들을 포함한다. 가닥간 수소결합, 정전기적 상호작용, 소수성상호작용, 반데르 발스 상호작용, 파이 -파이 상호작용, 양이온 -파이 상호작용 또는 이들의 조합에 의한 형성되는 비공유결합은 구조안정화 부위의 견고성 (rigidity)에 기여한다. Structural stabilization sites usable in the present invention include parallel, antiparallel or parallel and antiparallel amino acid strands, interstrand hydrogen bonds, electrostatic interactions, hydrophobic interactions, van der Waals interactions, pi-pi Protein structure motifs in which non-covalent bonds are formed by interaction, cation-pi interaction, or a combination thereof. Hydrogen bonds between the strands, electrostatic interactions, hydrophobic interactions, van der Waals interactions, pi-pi interactions, cation-pi interactions, or their Non-covalent bonds formed by combination contribute to the rigidity of the structure stabilization site.
본 발명의 바람직한 구현예에 따르면, 구조안정화 부위에서의 가닥간 (interstrand) 비공유결합은 수소결합, 소수성상호작용, 반데르 발스 상호작용, 파이 -파이 상호작용 또는 이들의 조합을 포함한다.  According to a preferred embodiment of the invention, interstrand non-covalent bonds at the structure stabilization site include hydrogen bonds, hydrophobic interactions, van der Waals interactions, pi-pi interactions or combinations thereof.
선택적으로, 구조화안정화 부위에 공유결합이 있을 수 있다. 예를 들어, 구조화안정화 부위에 이황화결합을 형성시켜 구조안정화 부위의 견고성을 더 증가시킬 수 있다. 이러한 공유결합에 의한 견고성 증가는 바이포달 펩타이드 바인더의 타겟에 대한 특이도 및 친화도를 고려하여 부여한다.  Optionally, there may be a covalent bond to the structured stabilization site. For example, disulfide bonds may be formed at the structured stabilization site to further increase the robustness of the structure stabilized site. The increase in firmness by such covalent bonds is given in consideration of the specificity and affinity of the bipodal peptide binder for the target.
본 발명의 바람직한 구현예에 따르면, 구조 안정화 부위의 아미노산 가닥들은 링커로 연결되어 있다. 본 명세서에서 가닥을 언급하면서 사용되는 용어 "링커" 는 가닥과 가닥을 연결시켜 주는 물질을 의미한다. 예컨대, 구조안정화 부위로서 β_헤어핀이 이용되는 경우에는 β-헤어핀에 있는 턴 서열이 링커의 역할을 하며, 루이신 지퍼가 이용되는 경우에는 루이신 지퍼의 두 c-말단을 연결하는 물질 (예컨대, 펩타이드 링커)이 링커의 역할을 한다.  According to a preferred embodiment of the invention, the amino acid strands of the structure stabilization site are linked by a linker. As used herein, the term "linker" as used to refer to the strands refers to the material that connects the strands. For example, when β_hairpin is used as a structure stabilization site, the turn sequence in β-hairpin acts as a linker, and when leucine zipper is used, a substance connecting two c-terminus of leucine zipper (eg , Peptide linkers) serve as linkers.
링커는 패러럴, 안티패러럴 또는 패러럴과 안티패러럴 아미노산 가닥들을 연결한다. 예컨대, 패러럴 방식으로 정렬된 최소 2 개의 가닥 (바람직하게는 2 개의 가닥), 안티패러럴 방식으로 정렬된 최소 2 개의 가닥 (바람직하게는 2 개의 가닥), 패러럴 및 안티패러럴 방식으로 정렬된 최소 3개의 가닥 (바람직하게는 3개의 가닥)을 링커가 연결하게 된다.  The linker connects the parallel, antiparallel or parallel and antiparallel amino acid strands. For example, at least two strands (preferably two strands) arranged in parallel fashion, at least two strands (preferably two strands) arranged in antiparallel fashion, and at least three strands arranged in parallel and antiparallel fashion. The linker (preferably three strands) is connected by the linker.
본 발명의 바람직한 구현예에 따르면, 링커는 턴 서열 또는 펩타이드 링커이다.  According to a preferred embodiment of the invention, the linker is a turn sequence or peptide linker.
본 발명의 바람직한 구현예에 따르면, 상기 턴 서열은 β-턴, Υ-턴, α-턴, π-턴 또는 ω-loop 이다 (Venkatachalam CM (1968), Biopolymers, 6, 1425-1436; Nemethy G and Printz MP. (1972), Macro/no 1 ecu les, 5, 755- 758; Lewis PN et al , , (1973), Biochi . Biophys. Acta, 303, 211-229; Toniolo C. (1980) CRC Crit. Rev. Biochem. , 9, 1-44; Richardson JS. (1981), Adv. Protein Chem. , 34, 167-339; Rose GD et al . , (1985), A/ . Protein Chem. , 37, 1-109; Mi lner— White EJ and Poet R. (1987), TIBS, 12 189-192; Wilmot CM and Thornton JM. (1988), J. Mol. Biol., 203, 221- 232; Milner-White EJ. (1990), J. Mol. Biol. , 216, 385-397; Pavone V et al . (1996), Biopolymers, 38, 705-721; Rajashankar KR and Ramakumar S. (1996), Protein Sci . , 5, 932-946). 가장 바람직하게는, 본 발명에서 이용되는 턴 서열은 β-턴이다. According to a preferred embodiment of the invention, the turn sequence is β-turn, Υ-turn, α-turn, π-turn or ω-loop (Venkatachalam CM (1968), Biopolymers, 6, 1425-1436; Nemethy G and Printz MP. (1972), Macro / no 1 ecu les, 5, 755-758; Lewis PN et al,, (1973), Biochi. Biophys. Acta, 303, 211-229; Toniolo C. (1980) CRC Crit. Rev. Biochem., 9, 1-44; Richardson JS. (1981), Adv. Protein Chem., 34, 167-339; Rose GD et al., (1985), A / .Protein Chem., 37 , 1-109; Mi lner— White EJ and Poet R. (1987), TIBS, 12 189-192; Wilmot CM and Thornton JM. (1988), J. Mol. Biol., 203, 221-232; Milner-White EJ. (1990), J. Mol. Biol. , 216, 385-397; Pavone V et al. (1996), Biopolymers, 38, 705-721; Rajashankar KR and Ramakumar S. (1996), Protein Sci. , 5, 932-946). Most preferably, the turn sequence used in the present invention is β-turn.
턴 서열로서 β-턴이 이용되는 경우, 바람직하게는 타입 I, 타입 Γ, 타입 π , 타입 π ' , 타입 m 또는 타입 m' 턴 서열이고, 보다 바람직하게는 타입 I, 타입 I'ᅳ 타입 π, 타입 π' 턴 서열이고, 보다 더 바람직하게는 타입 j ' 또는 타입 π' 턴 서열이며, 가장 바람직하게는 타입 Γ 턴 서열이다 (Β, L. Sibanda et al . , /. Mol. Biol., 1989, 206, 4, 759- 777; B. L. Sibanda et al . , Methods Enzymol . , 1991, 202, 59-82).  When β-turn is used as the turn sequence, it is preferably a type I, type Γ, type π, type π ', type m or type m' turn sequence, more preferably type I, type I 'ᅳ type π , A type π 'turn sequence, even more preferably a type j' or type π 'turn sequence, and most preferably a type Γ turn sequence (β, L. Sibanda et al., /. Mol. Biol., 1989, 206, 4, 759-777; BL Sibanda et al., Methods Enzymol., 1991, 202, 59-82).
본 발명의 다른 바람직한 구현예에 따르면, 본 발명에서 턴 서열로서 이용될 수 있는 것은 H. Jane Dyson et al . , Eur. J. Biochem. 255:462- 471(1998)에 개시되어 있으며, 상기 문헌은 본 명세서에 참조로서 삽입된다. 턴 서열로 이용될 수 있는 것은 다음의 아미노산 서열을 포함한다: X-Pro- Gly-Glu-Val; Ala— X-Gly—Glu-Val (X는 20 개의 아미노산으로부터 선택된다). 본 발명의 일 구현예에 따라, 구조안정화 부위로서 β-쉬트 또는 루이신 지퍼가 이용되는 경우, 패러럴 방식으로 정렬된 2 개의 가닥 또는 안티패러럴 방식으로 정렬된 2 개의 가닥을 펩타이드 링커가 연결하는 것이 바람직하다ᅳ  According to another preferred embodiment of the present invention, which can be used as the turn sequence in the present invention is H. Jane Dyson et al. , Eur. J. Biochem. 255: 462-471 (1998), which is incorporated herein by reference. Available for the turn sequence include the following amino acid sequences: X-Pro-Gly-Glu-Val; Ala— X-Gly—Glu-Val (X is selected from 20 amino acids). According to one embodiment of the invention, when a β-sheet or leucine zipper is used as the structure stabilization site, it is preferred that the peptide linker connects two strands arranged in a parallel manner or two strands arranged in an antiparallel manner. Desirable
펩타이드 링커는 당업계에 공지된 어떠한 것도 이용 가능하다. 적합한 펩타이드 링커의 서열은 다음과 같은 요소를 고려하여 선택될 수 있다: (a) 유연한 연장된 컨포메이션 (flexible extended conformation)에 적용될 수 있는 능력; (b) 생물학적 타겟 분자와 상호작용 하는 이차구조를 생성하지 않는 능력; 및 (C) 생물학적 타겟 분자와 상호작용하는 소수성 잔기 또는 전하를 갖는 잔기의 부재. 바람직한 펩타이드 링커는 Gly, Asn 및 Ser 잔기를 포함한다. Thr 및 Ala 과 같은 다른 중성 아미노산들도 링커 서열에 포함될 수 있다. 링커에 적합한 아미노산 서열은 Marat ea et al., Gene 40: 39-46 ( 1985); Murphy et al., Proc. Natl. Acad Sci. USA 83:8258-8562(1986); 미국 특허 제 4,935,233 호, 제 4,751,180 호 및 제 5,990,275 호에 개시되어 있다. 펩타이드 링커 서열은 1—50 아미노산 잔기로 구성될 수 있다. Peptide linkers can be used in any known in the art. The sequence of a suitable peptide linker may be selected in consideration of the following factors: (a) the ability to be applied to flexible extended conformation; (b) the ability not to create secondary structures that interact with biological target molecules; And (C) absence of hydrophobic residues or residues with charges that interact with the biological target molecule. Preferred peptide linkers include Gly, Asn and Ser residues. Other neutral amino acids such as Thr and Ala can also be included in the linker sequence. Suitable amino acid sequences for linkers are Marat ea et al., Gene 40: 39-46 (1985); Murphy et al., Proc. Natl. Acad Sci. USA 83: 8258-8562 (1986); US Pat. Nos. 4,935,233, 4,751,180 and 5,990,275. The peptide linker sequence may consist of 1-50 amino acid residues.
본 발명의 바람직한 구현예에 따르면, 구조안정화 부위는 β-헤어핀, 링커로 연결된 β-쉬트 또는 링커로 연결된 루이신 지퍼이고, 보다 바람직하게는 구조안정화 부위는 β-헤어핀 또는 링커로 연결된 β- 쉬트이며, 가장 바람직하게는 β-헤어괸이다.  According to a preferred embodiment of the present invention, the structural stabilization site is a β-hairpin, a linker linked β-sheet or a linker leucine zipper, more preferably the structural stabilization site is a β-hairpin or linker linked β-sheet And most preferably β-hairspray.
본 명세서에서 용어 "β-헤어핀" 은 두 개의 β 가닥을 포함하는 가장 간단한 단백질 모티프를 의미하며, 이 두 개의 β 가닥은 서로 안티패러럴한 정렬을 나타낸다. 이 β-헤어핀에서 두 개의 β 가닥은 일반적으로 턴 서열에 의해 연결된다.  As used herein, the term "β-hairpin" refers to the simplest protein motif comprising two β strands, the two β strands representing an antiparallel alignment with each other. In this β-hairpin the two β strands are generally linked by turn sequences.
바람직하게는, β-헤어핀에 적용되는 턴 서열은 타입 I, 타입 Γ, 타입 π, 타입 π', 타입 m 또는 타입 ΓΠ' 턴 서열이고, 보다 바람직하게는 타입 I, 타입 1', 타입 n, 타입 π' 턴 서열이고, 보다 더 바람직하게는 타입 Γ 또는 타입 π' 턴 서열이며, 가장 바람직하게는 타입 Γ 턴 서열이다. 또한, X-Pro-Gly-Glu-Val; 또는 Ala-X-Gly-Glii-Val (X는 20 개의 아미노산으로부터 선택된다)으로 표시되는 턴 서열도 β-헤어핀에 이용될 수 있다.  Preferably, the turn sequence applied to the β-hairpin is a type I, type Γ, type π, type π ', type m or type ΓΠ' turn sequence, more preferably type I, type 1 ', type n, It is a type π 'turn sequence, even more preferably a type Γ or type π' turn sequence, and most preferably a type Γ turn sequence. In addition, turn sequences represented by X-Pro-Gly-Glu-Val; or Ala-X-Gly-Glii-Val (X is selected from 20 amino acids) can also be used for β-hairpins.
본 발명의 예시적인 실시예에 따르면, 타입 I 턴 서열은 Asp-Asp- Ala-Thr-Lys-Thr 이고, 타입 Γ 턴 서열은 Glu-Asn-Gly-Lys 이며, 타입 Π 턴 서열은 X-Pro-Gly-Glu-Val; 또는 Ala-X—Gly—Glu-Val (X 는 20 개의 아미노산으로부터 선택된다)이고, 타입 Π' 턴 서열은 Glu-Gly-Asn-Lys 또는 Glu-D-Pro— Asn-Lys이다.  According to an exemplary embodiment of the invention, the type I turn sequence is Asp-Asp-Ala-Thr-Lys-Thr, the type Γ turn sequence is Glu-Asn-Gly-Lys, and the type Π turn sequence is X-Pro -Gly-Glu-Val; or Ala-X—Gly—Glu-Val (X is selected from 20 amino acids), and the type Π ′ turn sequence is Glu-Gly-Asn-Lys or Glu-D-Pro—Asn -Lys.
β-헤어핀 콘포메이션을 갖는 펩타이드는 당업계에 잘 알려져 있다. 예를 들어 , 미국 특허 제 6,914,123호 및 Andrea G. Cochran et al . , PNAS, 98(10) :5578-5583)에 개시되어 있는 트립토판 지퍼, W0 2005/047503 에 개시되어 있는 주형-고정된 β-헤어핀 미멕틱, 미국 특허 제 5ᅳ 807, 979호에 개시되어 있는 β-헤어핀 변형체들이 잘 알려져 있다. 이외에도, — 헤어핀 콘포메이션을 갖는 펩타이드는 Smith & Regan (1995) Science 270:980-982; Chou & Fassman (1978) Annu. Rev. Biochem. 47:251-276; Kim & Berg (1993) Nature 362:267-270; Minor & Kim (1994) Nature 367:660— 663; Minor & Kim (1993) Nature 371:264-267; Smith et al. Biochemistry (1994) 33:5510-5517; Searle et al. (1995) Nat. Struct. Biol. 2:999- 1006; Haque & Gel 1 man (1997) J. Am. Chem. Soc. 119:2303-2304; Blanco et al. (1993) J. Am. Chem. Soc. 115:5887-5888; de Alba et al . (1996) Fold. Des. 1: 133-144; de Alba et al. (1997) Protein Sci. 6:2548-2560; Rami rez-Alvar ado et al. (1996) Nat. Struct. Biol . 3:604-612; St anger & Gel 1 man (1998) J. Am. Chem. Soc. 120:4236-4237; Maynard & Searle (1997) Chem. Co醒 un. 1297-1298; Griffiths-Jones et al. (1998) Chem. Commun. 789-790; Maynard et al . (1998) J. Am. Chem. Soc. 120:1996- 2007; 및 Blanco et al. (1994) Nat. Struct. Biol. 1: 584-590 에 개시되어 있으며, 상기 문헌은 본 명세서에 참조로서 삽입된다. Peptides with β-hairpin formulations are well known in the art. See, for example, US Pat. No. 6,914,123 and Andrea G. Cochran et al. , PNAS, tryptophan zipper disclosed in 98 (10): 5578-5583, template-fixed β-hairpin mimetic disclosed in WO 2005/047503, disclosed in US Pat. No. 5,077,979. β-hairpin variants are well known. In addition, — peptides with hairpin conformation are described by Smith & Regan (1995) Science 270: 980-982; Chou & Fassman (1978) Annu. Rev. Biochem. 47: 251-276; Kim & Berg (1993) Nature 362: 267-270; Minor & Kim (1994) Nature 367: 660-663; Minor & Kim (1993) Nature 371: 264-267; Smith et al. Biochemistry (1994) 33: 5510-5517; Searle et al. (1995) Nat. Struct. Biol. 2: 999-1006; Haque & Gel 1 man (1997) J. Am. Chem. Soc. 119: 2303-2304; Blanco et al. (1993) J. Am. Chem. Soc. 115: 5887-5888; de Alba et al. (1996) Fold. Des. 1: 133-144; de Alba et al. (1997) Protein Sci. 6: 2548-2560; Rami rez-Alvar ado et al. (1996) Nat. Struct. Biol. 3: 604-612; St anger & Gel 1 man (1998) J. Am. Chem. Soc. 120: 4236-4237; Maynard & Searle (1997) Chem. Co 醒 un. 1297-1298; Griffiths-Jones et al. (1998) Chem. Commun. 789-790; Maynard et al. (1998) J. Am. Chem. Soc. 120: 1996- 2007; and Blanco et al. (1994) Nat. Struct. Biol. 1: 584-590, which is incorporated herein by reference.
β-헤어핀 콘포메이션을 갖는 펩타이드를 구조안정화 부위로 이용하는 경우, 가장 바람직하게는 트립토판 지퍼를 이용한다.  When a peptide having β-hairpin conformation is used as the structure stabilization site, most preferably a tryptophan zipper is used.
본 발명의 바람직한 구현예에 따르면, 본 발명에서 이용되는 트립토판 지퍼는 다음 일반식 I로 표시된다:  According to a preferred embodiment of the present invention, the tryptophan zipper used in the present invention is represented by the following general formula (I):
일반식 I  Formula I
X1-Trp(X2)X3-X4-X5(X,2)X6-X7 X 1 -Trp (X 2 ) X3-X4-X5 (X , 2) X6-X7
¾은 Ser 또는 Gly-Glu이고, X2 및 X'2는 서로 독립적으로 Thr, His, Val, lie, Phe 또는 Tyr 이며, X3는 Trp 또는 Tyr 이고, X4는 타입 I, 타입 Ι', 타입 Π, 타입 Π' 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, ¾는 Trp 또는 Phe이며 , ¾는 Trp 또는 Val이고, X7는 Lys 또는 Thr-Glu이다. ¾ is Ser or Gly-Glu, X 2 and X ' 2 are independently of each other Thr, His, Val, lie, Phe or Tyr, X 3 is Trp or Tyr, X4 is Type I , Type Ι ′, Type Π, type Π 'or type m or type ΠΓ turn sequence, ¾ is Trp or Phe, ¾ is Trp or Val, and X 7 is Lys or Thr-Glu.
보다 바람직하게는, 상기 일반식 I에서 ¾은 Ser 또는 Gly-Glu이고, 및 χ'2 는 서로 독립적으로 Thr, His 또는 Val 이며, ¾ 는 Trp 또는 Tyr 이고, 는 타입 I, 타입 Γ, 타입 Π 또는 타입 Π' 턴 서열이고, ¾는 Trp 또는 Phe이며, ¾는 Trp 또는 Val이고, X?는 Lys 또는 Thr-Glu이다. 보다 더 바람직하게는, 일반식 I 에서 ¾은 Ser 또는 Gly— Glu 이고, More preferably, in Formula I, ¾ is Ser or Gly-Glu, and χ'2 is independently of each other Thr, His or Val, ¾ is Trp or Tyr, is Type I, Type Γ, Type Π Or type Π 'turn sequence, ¾ is Trp or Phe, ¾ is Trp or Val, and X? Is Lys or Thr-Glu. Even more preferably, ¾ in Formula I is Ser or Gly— Glu,
X2 및 X'2는 서로 독립적으로 Thr, His 또는 Val 이며 , ¾는 Trp 이고, 는 타입 I, 타입 Γ , 타입 Π 또는 타입 Π ' 턴 서열이고, ¾는 Trp이며, ¾는 Trp이고, X7는 Lys 또는 Thr-Glu이다. X 2 and X ' 2 are independently of each other Thr, His or Val, ¾ is Trp, is type I, type Γ, type Π or type Π' turn sequence, ¾ is Trp, ¾ is Trp, X 7 is Lys or Thr-Glu.
보다 더욱 더 바람직하게는, 일반식 I 에서 ¾은 ser 이고, ¾ 및 X'2는 Thr 이며, ¾는 Trp 이고, 는 타입 Γ 또는 타입 Π ' 턴 서열이고, ¾는 Trp이며, ¾는 Trp이고, ¾는 Lys이다. 가장 바람직하게는, 일반식 I 에서 Xl 은 Ser 이고, ¾ 및 X'2 는 Thr 이며, ¾는 Trp 이고, X4는 타입 Γ 턴 서열 (ENGK) 또는 타입 Π ' 턴 서열 (EGNK)이고, ¾는 Trp이며, ¾는 Trp이고, X7는 Lys이다. Even more preferably, in formula I, ¾ is ser, ¾ and X ' 2 are Thr, ¾ is Trp, is a type Γ or type Π' turn sequence, ¾ is Trp, ¾ is Trp ¾ is Lys. Most preferably, in Formula I, Xl is Ser, ¾ and X'2 are Thr, ¾ is Trp, X4 is type Γ turn sequence (ENGK) or type Π 'turn sequence (EGNK), ¾ is Trp, ¾ is Trp, and X 7 is Lys.
본 발명에 적합한 트립토판 지퍼의 예시적인 아미노산 서열은 서열목록 제 1서열 내지 제 3서열 및 제 5서열 내지 제 10서열에 기재되어 있다.  Exemplary amino acid sequences of tryptophan zippers suitable for the present invention are described in SEQ ID NOs: 1 to 3 and 5 to 10.
본 발명에서 구조안정화 부위로서 이용가능한 β-헤어핀 펩타이드는 단백질 G의 B1 도멘인으로부터 유래된 펩타이드, 즉 GB1 펩타이드이다。  Β-hairpin peptides usable as structural stabilization sites in the present invention are peptides derived from B1 domaine of protein G, ie GB1 peptides.
본 발명에서 GB1 펩타이드가 이용되는 경우, 바람직하게는 구조안정화 부위는 다음 일반식 Π로 표시된다:  When the GB1 peptide is used in the present invention, the structural stabilization site is preferably represented by the following general formula Π:
일반식 Π  Formula Π
Xi-Trp-X2-Tyr-X3-Phe-Thr-Va 1 -¾ Xi-Trp-X 2 -Tyr-X3-Phe-Thr-Va 1 -¾
¾은 Arg, Gly-Glu또는 Lys-Lys이고, X2는 Gin또는 Thr이며, ¾는 타입 I, 타입 Γ, 타입 Π, 타입 ΓΓ 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, X4는 Gin, Thr-Glu또는 Gln-Glu이다. ¾ is Arg, Gly-Glu or Lys-Lys, X 2 is Gin or Thr, ¾ is type I, type Γ, type Π, type ΓΓ or type m or type ΠΓ turn sequence, X4 is Gin, Thr- Glu or Gln-Glu.
보다 바람직하게는, 일반식 π의 구조안정화 부위는 다음 일반식 More preferably, the structural stabilization site of the general formula π is
ΙΓ으로표시된다: It is represented by ΙΓ:
일반식 Π  Formula Π
X厂 Trp-Thr-Tyr-¾-Phe-Thr— Va 1 -¾  X 厂 Trp-Thr-Tyr-¾-Phe-Thr— Va 1 -¾
¾은 Gly-Glu 또는 Lys-Lys 이고 , X2는 타입 I, 타입 Γ , 타입 Π , 타입 Π ' 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, ¾ 는 Thr-Glu 또는 Gln-Glu이다. ¾ is Gly-Glu or Lys-Lys, X 2 is type I, type Γ, type Π, type Π 'or type m or type ΠΓ turn sequence, ¾ is Thr-Glu or Gln-Glu.
본 발명에 적합한 GB1 β-헤어핀의 예시적인 아미노산 서열은 서열목록 제 4서열 및 제 14서열 내지 제 15서열에 기재되어 있다.  Exemplary amino acid sequences of GB1 β-hairpins suitable for the present invention are described in SEQ ID NO: 4 and 14 to 15 sequences.
본 발명에서 구조안정화 부위로서 이용 가능한 β-헤어핀 펩타이드는 Β-hairpin peptides usable as structural stabilization sites in the present invention
HP 펩타이드이다. 본 발명에서 HP 펩타이드가 이용되는 경우, 바람직하게는 구조안정화부위는 다음 일반식 m으로 표시된다: HP peptide. When the HP peptide is used in the present invention, the structural stabilization site is preferably represented by the following general formula m:
일반식 m  General formula m
¾-¾-¾— Trp-X4-X5-Thr-¾-X7 ¾-¾-¾— Trp-X4-X 5 -Thr-¾-X 7
¾은 Lys 또는 Lys— Lys이고, ¾는 Trp 또는 Tyr이고, ¾는 Val 또는 ¾ is Lys or Lys— Lys, ¾ is Trp or Tyr, ¾ is Val or
Thr 이며, 는 타입 I, 타입 Γ, 타입 Π, 타입 ΓΓ 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, ¾는 Trp 또는 Ala 이며, ¾는 Trp 또는 Val 이고, X7은 Glu또는 Gln-Glu이다. Thr is, type I , type Γ , type Π , type ΓΓ or type m or Type ΠΓ turn sequence, ¾ is Trp or Ala, ¾ is Trp or Val, and X 7 is Glu or Gln-Glu.
본 발명에서 구조안정화 부위로서 이용 가능한 또 다른 β-헤어핀 펩타이드는 다음 일반식 IV로 표시된다:  Another β-hairpin peptide that can be used as a structural stabilization site in the present invention is represented by the following general formula IV:
일반식 IV Formula IV
Figure imgf000012_0001
Figure imgf000012_0001
¾은 Lys-Thr 또는 Gly이고, ¾는 Trp 또는 Tyr 이고, ¾는 타입 I, 타입 Γ, 타입 II, 타입 Π' 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, 는 Thr-Glu또는 Gly이다.  ¾ is Lys-Thr or Gly, ¾ is Trp or Tyr, ¾ is type I, type Γ, type II, type Π 'or type m or type ΠΓ turn sequence, and is Thr-Glu or Gly.
일반식 III 및 IV 의 β-헤어핀의 예시적인 아미노산 서열은 서열목록 제 11 서열 내지 제 12 서열, 제 15 서열 및 제 16 서열 내지 제 19서열에 기재되어 있다.  Exemplary amino acid sequences of β-hairpins of Formulas III and IV are described in SEQ ID NOs: 11-12, 15, and 16-19.
본 발명에 따르면, 구조안정화 부위로서 링커로 연결된 -쉬트를 이용할 수 있다. β-쉬트 구조에서 패러럴 또는 안티패러럴한, 바람직하게는 안티패러럴한 두 개의 아미노산 가닥이 뻗은 구조 (extended form)로 되어 있으며, 아미노산 가닥사이에 수소 결합이 형성된다.  According to the present invention, a -sheet connected by a linker can be used as the structural stabilization site. In the β-sheet structure, two or more amino acid strands, which are parallel or antiparallel, preferably antiparallel, are in an extended form, and hydrogen bonds are formed between the amino acid strands.
β-쉬트 구조에서 두 개의 아미노산 가닥의 인접한 두 말단은 링커에 의해 연결된다. 링커로서는 상술한 다양한 턴 -서열 또는 펩타이드 링커가 이용될 수 있다. 턴-서열이 링커로 이용되는 경우, β-턴 서열이 가장 바람직하다.  In the β-sheet structure, two adjacent ends of two amino acid strands are connected by a linker. As the linker, various turn-sequences or peptide linkers described above may be used. If the turn-sequence is used as a linker, the β-turn sequence is most preferred.
본 발명의 다른 변형예에 따르면, 구조안정화 부위로서 루이신 지퍼 또는 링커로 연결된 루이신 지퍼가 이용될 수 있다. 루이신 지퍼는 패러럴한 2 개의 α-사슬의 다이머화를 야기하는 보존성 펩타이드 도메인이며, 일반적으로 유전자 발현에 관여하는 단백질에 발견되는 다이머화 도메인이다 ("Leucine scissors" . Glossary of Biochemistry and Molecular Biology (Revised). (1997). Ed. David M. Glick. London: Portland Press; Lands chulz WH, et al . (1988) Science 240:1759-1764). 루이신 지퍼는 일반적으로 헵태드 (heptad) 반복 서열을 포함하며, 루이신 잔기가 4 번째 또는 5 번째에 위치해 있다. 예를들어, 본발명에 이용될 수 있는 루이신 지퍼는 LEALKEK, LKALEKE, LKKLVGE, LEDKVEE, LENEVAR또는 LLSKNYH 의 아미노산 서열을 포함한다. 본 발명에서 이용되는 루이신 지퍼의 구체적인 예를서열목록 제 39서열에 기재되어 있다. 루이신 지퍼의 각각의 반은 짧은 α-사술로 이루어져 있으며, α-사슬간의 직접적인 루이신 접촉이 있다. 전사인자에 있는 루이신 지퍼는 일반적으로 소수성 루이신 지퍼 부위 및 염기성 부위 (DNA 분자의 주 그루브와 상호작용하는 부위)로 이루어져 있다. 본 발명에서 루이신 지퍼가 이용되는 경우에는 염기성 부위는 반드시 필요로 하지 않는다. 루이신 지퍼 구조에서 두 개의 아미노산 가닥 (즉, 두 개의 α-사슬)의 인접한 두 말단은 링커에 의해 연결될 수 있다. 링커로서는 상술한 다양한 턴 -서열 또는 펩타이드 링커가 이용될 수 있으며, 바람직하게는 루이신 지퍼의 구조에 영향을 미치지 않는 펩타이드 링커가 이용된다. According to another variant of the invention, leucine zippers or leucine zippers linked by linkers may be used as structural stabilization sites. Leucine zippers are conserved peptide domains that cause parallel dimerization of two α-chains and are generally dimerized domains found in proteins involved in gene expression (“Leucine scissors”. Glossary of Biochemistry and Molecular Biology ( (1997) .Ed. David M. Glick.London: Portland Press; Lands chulz WH, et al. (1988) Science 240: 1759-1764). Leucine zippers generally comprise a heptad repeat sequence, with the leucine residues located at the fourth or fifth. For example, leucine zippers that may be used in the present invention include the amino acid sequence of LEALKEK, LKALEKE, LKKLVGE, LEDKVEE, LENEVAR or LLSKNYH. Leucine used in the present invention Specific examples of zippers are described in SEQ ID NO: 39. Each half of the leucine zipper consists of short α-hexens with direct leucine contact between the α-chains. The leucine zipper in the transcription factor generally consists of a hydrophobic leucine zipper site and a basic site (site that interacts with the main groove of the DNA molecule). When the leucine zipper is used in the present invention, the basic site is not necessarily required. In the leucine zipper structure, two adjacent ends of two amino acid strands (ie, two α-chains) may be linked by a linker. As the linker, various turn-sequences or peptide linkers described above may be used, and preferably, a peptide linker that does not affect the structure of the leucine zipper is used.
상술한 구조안정화 부위의 양 말단에는 무작위 아미노산 서열이 결합된다. 상기 무작위 아미노산 서열이 Cytokine-타겟 결합 부위 I 및 Cytokine-타겟 결합 부위 Π를 형성한다. 본 발명의 가장 큰 특징 중 하나는, 구조안정화 부위의 양쪽 말단에 Cytokine-타겟 결합 부위 I 및 Cytokine-타겟 결합 부위 Π를 연결하여 바이포달 방식으로 펩타이드 바인더를 제작하는 것이다. Cytokine-타겟 결합 부위 I 및 Cytokine-타겟 결합 부위 Π는 서로 협동적으로 (cooperatively) 타겟에 결합함으로써, Cytokine에 대한 친화도를 크게 증가시킨다.  Random amino acid sequences are joined to both ends of the structure stabilization site described above. The random amino acid sequence forms Cytokine-target binding site I and Cytokine-target binding site Π. One of the biggest features of the present invention is to prepare a peptide binder in a bipodal manner by connecting Cytokine-target binding site I and Cytokine-target binding site Π to both ends of the structure stabilization site. Cytokine-target binding site I and Cytokine-target binding site Π cooperatively bind to the target, thereby greatly increasing affinity for Cytokine.
Cytokine-타겟 결합 부위 I의 아미노산 개수 n은 특별하게 제한되지 않으며, 바람직하게는 2-100 의 정수, 보다 바람직하게는 2-50 의 정수, 보다 더욱 더 바람직하게는 2-20 의 정수, 가장 바람직하게는 3-10 의 정수이다.  The amino acid number n of the cytokine-target binding site I is not particularly limited, preferably an integer of 2-100, more preferably an integer of 2-50, even more preferably an integer of 2-20, most preferred Preferably an integer of 3-10.
Cytokine-타겟 결합 부위 Π의 아미노산 개수 m 은 특별하게 제한되지 않으며, 바람직하게는 2-100 와 정수, 보다 바람직하게는 2-50 의 정수, 보다 더욱 더 바람직하게는 2-20 의 정수, 가장 바람직하게는 3-10 의 정수이다.  The number of amino acids m of the cytokine-target binding site Π is not particularly limited, and is preferably 2-100 and an integer, more preferably an integer of 2-50, even more preferably an integer of 2-20, most preferably Preferably an integer of 3-10.
Cytokine-타겟 결합 부위 I 및 Cytokine-타겟 결합 부위 Π에는 서로 각각 다른 또는 동일한 개수의 아미노산 잔기가 포함될 수 있다. Cytokine-타겟 결합 부위 I 및 Cytokine-타겟 결합 부위 Π에는 서로 각각 다른 또는 동일한 아미노산 서열이 포함될 수 있으며, 바람직하게는 서로 각각 다른 아미노산서열이 포함된다。 Cytokine-타겟 결합 부위 I 및 /또는 Cytokine-타겟 결합 부위 Π에 포함되는 아미노산 서열은 선형의 아미노산 서열 또는 환형의 아미노산 서열이다. 타겟 결합 부위의 펩타이드 서열의 안정성을 증가시키기 위하여, Cytokine-타겟 결합 부위 I 및 /또는 Cytokine-타겟 결합 부위 Π에 포함되는 아미노산 서열 중에서 적어도 하나의 아미노산 잔기는 아세틸기, 플루오레닐 메톡시 카르보닐기, 포르밀기, 팔미토일기, 미리스틸기, 스테아릴기 또는 폴리에틸렌글리콜 (PEG)로 변형될 수 있다. Cytokine-target binding site I and Cytokine-target binding site Π may each contain different or identical numbers of amino acid residues. Cytokine-target binding site I and Cytokine-target binding site Π may include different or identical amino acid sequences, and preferably include different amino acid sequences. The amino acid sequence contained in Cytokine-target binding site I and / or Cytokine-target binding site Π is a linear amino acid sequence or a cyclic amino acid sequence. In order to increase the stability of the peptide sequence of the target binding site, at least one amino acid residue among the amino acid sequences included in the Cytokine-target binding site I and / or the Cytokine-target binding site Π is an acetyl group, a fluorenyl methoxy carbonyl group, Formyl, palmitoyl, myristyl, stearyl or polyethylene glycol (PEG).
생물학적 타겟 분자에 결합되는 본 발명의 Cytokine-BPB 는 생체 내 생리학적 반응의 조절, 생체 내 물질의 검출, 인 비보 분자 이미징, 및 약물전달용 타겟팅을 하는 데 이용될 수 있으며, 에스코트 분자로도 이용될 수 있다ᅳ  Cytokine-BPB of the present invention, which is bound to a biological target molecule, can be used for the regulation of physiological responses in vivo, detection of substances in vivo, imaging of in vivo molecules, and targeting for drug delivery, and also as an escort molecule. Can be
본 발명의 바람직한 구현예에 따르면, 구조 안정화 부위, Cytokine- 타겟 결합 부위 I 또는 Cytokine-타겟 결합 부위 Π (보다 바람직하게는, 구조안정화 부위, 보다 더 바람직하게는 구조안정화 부위의 링커)에 카르고가 결합되어 있다. 상기 카르고의 예는 검출가능한 신호를 발생시키는 레이블, 화학약물, 바이오약물 또는 나노입자를 포함하나, 이에 한정되는 것은 아니다.  According to a preferred embodiment of the present invention, a cargo is added to the structure stabilization site, the Cytokine-target binding site I or the Cytokine-target binding site Π (more preferably, the structure stabilization site, even more preferably the linker of the structure stabilization site). Are combined. Examples of the cargo include, but are not limited to, labels, chemicals, biopharmaceuticals or nanoparticles that generate detectable signals.
상기 검출가능한 신호를 발생시키는 레이블은 T1 조영물질 (예컨대, Gd 킬레이트 화합물), T2 조영물질 (예컨대, 초상자성 물질 (예: 마그네타이트, Fe304, Y-Fe203, 망간 페라이트, 코발트 페라이트 및 니켈 페라이트)) , 방사성 동위 원소 (예컨대, , 150, 13N, P32, S35, 44Sc, 45Ti, 1181, 136La, 198T1 , 200Τ1 , 205Bi 및 206Bi), 형광물질 (플루오리신 (fluorescein), 피코에리트린 (phycoerythrin), 로다민, 리사민 (lissamine), 그리고 Cy3 와 Cy5), 화학발광단, 자기입자, 매스 표지 또는 전자밀집입자를 포함하나 이에 제한되는 것은 아니다. Labels that generate the detectable signal include T1 contrast (eg Gd chelate compounds), T2 contrast (eg superparamagnetics (eg magnetite, Fe 3 0 4 , Y-Fe 2 0 3 , manganese ferrite, cobalt) Ferrites and nickel ferrites)), radioisotopes (e.g., 15 0, 13 N, P 32 , S 35 , 44 Sc, 45 Ti, 118 1, 136 La, 198 T1, 200 Τ1, 205 Bi and 206 Bi) , Including but not limited to fluorescent materials (fluorescein, phycoerythrin, rhodamine, lissamine, and Cy3 and Cy5), chemilumines, magnetic particles, mass labels or electron-dense particles It doesn't happen.
Cytokine—타겟 결합 부위 I 및 /또는 Cytokine-타겟 결합 부위 Π는 Cytokine에 결합하는 아미노산 서열을 포함한다.  Cytokine—target binding site I and / or Cytokine-target binding site Π comprises an amino acid sequence that binds to Cytokine.
본발명의 BPB분자가 결합하는 Cytokine은당업계에 공지된 다양한 Cytokine 을 포함하며, 바람직하게는 TNF(tumor necrosis factor) alpha, TNF beta, inter leukin-lO(IL-lO) , interferon beta(IFN|3 ), interferon alphaClFN a ) , interferon gamma (IFNy ) , granulocyte colony stimulating factor (G-CSF) , leukemia inhibitory factor (LIF) , human growth hormone (hGH), ciliary neurotrophic factor (CNTF) , leptin, oncost at in M, inter leukin-6 (IL-6) and inter leukin-12 (IL-12) , erythropoietin (EPO), granulocyte—macrophage colony stimulating factor (GM-CSF) , inter leukin-2 (IL-2), inter leukin-3 (IL-3), inter leukin-4 (IL— 4), interleukin-5 (IL-5) , inter leukin- 13 (ILᅳ 13), Fit 13 1 igand 및 stem cell factor (SCF)를 포함한다. Cytokine to which the BPB molecule of the present invention binds includes various Cytokines known in the art, preferably TNF (tumor necrosis factor) alpha, TNF beta, inter leukin-lO (IL-lO), interferon beta (IFN | 3 ), interferon alphaClFN a), interferon gamma (IFNy), granulocyte colony stimulating factor (G-CSF), leukemia inhibitory factor (LIF), human growth hormone (hGH), ciliary neurotrophic factor (CNTF), leptin, oncost at in M, inter leukin-6 (IL-6) and inter leukin-12 ( IL-12), erythropoietin (EPO), granulocyte—macrophage colony stimulating factor (GM-CSF), inter leukin-2 (IL-2), inter leukin-3 (IL-3), inter leukin-4 (IL— 4 ), interleukin-5 (IL-5), inter leukin- 13 (IL'13), Fit 13 1 igand and stem cell factor (SCF).
본 발명의 Cytokine-BPB는 Cytokine에 결합하여 Cytokine의 작용을 억제하는 작용을 한다.  Cytokine-BPB of the present invention binds to cytokine and acts to inhibit the action of cytokine.
상술한 바와 같이, 본 발명의 바이포달 펩타이드 바인더는 전형적으로 "N-Cytokine-타겟 결합 부위 1_구조안정화 부위의 한 가닥- 링커 -구조안정화 부위의 다른 가닥 -Cytokine-타겟 결합 부위 Π-C"의 컨스트럭트를 갖는다.  As mentioned above, the bipodal peptide binder of the present invention is typically referred to as "one strand of the N-Cytokine-target binding site 1_structural stabilization site-linker-the other strand of the structural stabilization site-Cytokine-target binding site Π-C" Has a construct of
본 발명의 바람직한 구현예에 따르면, 본 발명의 Cytokine-바이포달 펩타이드 바인더에서 Cytokine-타겟 결합 부위 I 과 구조안정화 부위의 한 가닥 사이 및 /또는 구조안정화 부위의 다른 가닥 -Cytokine-타겟 결합 부위 Π 사이에는, Cytokine-타겟 결합 부위와 구조안정화 부위 간의 상호 구조적 영향을 차단하는 구조영향 억제부위 (structure influence inhibiting region)를 포함한다. 회전 부위에는 펩타이드 분자에서 ^와 ^의 회전이 비교적 자유로운 아미노산이 위치한다. 바람직하게는, 와 ^의 회전이 비교적 자유로운 아미노산은 글라이신, 알라닌 및 세린이다. 구조영향 억제부위에는 1-10 개, 바람직하게는 1-8 개, 보다 바람직하게는 1-3개의 아미노산 잔기가 위치할 수 있다.  According to a preferred embodiment of the invention, between the Cytokine-target binding site I and one strand of the structure stabilization site and / or between the other strand of the structure stabilization site -Cytokine-target binding site Π in the Cytokine-bipodal peptide binder of the present invention Includes a structure influence inhibiting region that blocks the cross-structural effects between the cytokine-target binding site and the structure stabilization site. At the site of rotation are amino acids that are relatively free of rotation of ^ and ^ in the peptide molecule. Preferably, the amino acids having relatively free rotation of and ^ are glycine, alanine and serine. 1-10, preferably 1-8, more preferably 1-3 amino acid residues may be located in the structure influence inhibitory site.
상술한 컨스트럭트를 갖는 본 발명의 Cytokine-바이포달 펩타이드 바인더의 라이브러리는 당업계에 공지된 다양한 방법으로 얻을 수 있다. 이 라이브러리에서 Cytokine-바이포달 펩타이드 바인더는 무작위 서열을 갖게 되며, 이는 Cytokine-타켓 결합 부위 I 및 /또는 Cytokine-타겟 결합 부위 Π의 어떤 위치에서도 서열 선호도 (sequence preference)가 없거나 또는 지정 (또는 고정)된 아미노산 잔기가 없다는 것을 의미한다.  The library of Cytokine-bipodal peptide binders of the present invention having the constructs described above can be obtained by various methods known in the art. In this library, the Cytokine-bipodal peptide binder will have a random sequence, which has no sequence preference or designation (or immobilization) at any position of Cytokine-target binding site I and / or Cytokine-target binding site Π. It means no amino acid residues.
예를 들어, Cytokine-바이포달 펩타이드 바인더의 라이브러리는 고상지지체 (예컨대, 폴리스틸렌 또는 폴리아크릴아미드 수지) 상에서 실시되는 스플리트 -합성 방법 (Lam et al . (1991) Nature 354: 82; WO 92/00091)에 따라 구축될 수 있다. For example, a library of Cytokine-bipodal peptide binders may be prepared on solid phase supports (eg, polystyrene or polyacrylamide resins). It can be constructed according to the split-synthesis method carried out (Lam et al. (1991) Nature 354: 82; WO 92/00091).
본 발명의 바람직한 구현예에 따르면, Cytokine-바이포달 펩타이드 바인더의 라이브러리는 세포 표면 전시 (cell surface display)방식 (예컨대 , 파아지 디스플레이, 박테리아 디스플레이 또는 이스트 디스플레이)으로 구축된다. 바람직하게는, Cytokine-바이포달 펩타이드 바인더의 라이브러리는 플라스미드, 박테리오파아지, 파아지미드, 이스트, 박테리아, mRNA 또는 라이보좀을 기반으로 하는 디스플레이방법을 통하여 제작될 수 있다. According to a preferred embodiment, a library of bi Cytokine- podal peptide binder is constructed by a cell surface display (display surface ce ll) scheme (e.g., phage display, bacteria display or yeast display). Preferably, the library of Cytokine-bipodal peptide binder may be prepared through a display method based on plasmid, bacteriophage, phagemid, yeast, bacteria, mRNA or ribosomes.
파아지 디스플레이는 파아지의 표면 상의 코트 단백질에 융합된 단백질 형태로 다양한 폴리펩타이드를 디스플레이하는 기술이다 (Scott, J. K. and Smith, G. P. (1990) Science 249: 386; Sambrook, J. et al . , Molecular Cloning. A Laboratory Manual , 3rd ed. Cold Spring Harbor Press(2001); Clackson and Lowman , Phage Display, Oxford University Press(2004)). 필라멘트성 파아지 (예컨대, M13)의 유전자 ΙΠ 또는 유전자 珊에 발현하고자 하는 유전자를 융합시켜 무작위 펩타이드를 디스플레이한다.  Phage display is a technique for displaying various polypeptides in the form of proteins fused to coat proteins on the surface of the phage (Scott, JK and Smith, GP (1990) Science 249: 386; Sambrook, J. et al., Molecular Cloning. A Laboratory Manual, 3rd ed.Cold Spring Harbor Press (2001); Clackson and Lowman, Phage Display, Oxford University Press (2004). Random peptides are displayed by fusing the gene to be expressed in gene ΙΠ or gene uptake of filamentous phage (eg, M13).
파이지 디스플레이에는 파아지미드가 이용될 수 있다. 파아지미드는 박테리아의 복제원점 (예컨대, ColEl) 및 박테리오파아지의 인터제닉 (intergenic) 부위의 한 카피를 갖는 플라스미드 백터이다. 이 파아지미드에 클로닝된 DNA 단편은 플라스미드처럼 증식된다.  Phageimide may be used for the fiji display. Phageimide is a plasmid vector with one copy of the bacterial origin of replication (eg, ColEl) and the intergenic site of the bacteriophage. DNA fragments cloned in this phagemid are propagated like plasmids.
Cytokine-바이포달 펩타이드 바인더의 라이브러리를 파아지 디스플레이 방식으로 구축하는 경우, 본 발명의 바람직한 구현예는 다음의 단계를 포함한다: (i) 파아지 코트 단백질 (예컨대, M13 과 같은 필라멘트성 파아지의 유전자 m 또는 유전자 珊 코트 단백질)을 코딩하는 유전자와 바이포달 템타이드 바인더를 코딩하는 유전자가 융합된 융합 유전자; 및 상기 융합 유전자에 작동적으로 결합된 전사 조절 서열 (예컨대, lac 프로모터)을 포함하는 발현 백터의 라이브러리를 제작하는 단계; (ii) 상기 발현 백터 라이브러리를 적합한 숙주 세포에 도입시키는 단계; (Hi) 상기 숙주세포를 배양하여 재조합 파아지 또는 파아지미드 바이러스 파티클을 형성시켜 융합 단백질이 표면에 디스플레이 되도록 하는 단계; (iv) Cytokine 분자와 상기 바이러스 파티클을 접촉시켜 파티클을 타겟 분자에 결합시키는 단계; 및 (V) Cytokine 분자에 결합하지 않은 파티클을 분리하는 단계 . When constructing a library of Cytokine-bipodal peptide binders by phage display, a preferred embodiment of the present invention comprises the following steps: (i) phage coat protein (eg, gene m of filamentous phage such as M13 or A fusion gene in which a gene encoding a gene free coat protein) and a gene encoding a bipodal tempide binder are fused; And constructing a library of expression vectors comprising transcriptional regulatory sequences (eg, lac promoters) operably linked to the fusion gene; (ii) introducing said expression vector library into a suitable host cell; (Hi) culturing the host cell to form a recombinant phage or phagemid virus particle so that the fusion protein is displayed on the surface; (iv) Contacting the cytokine molecule with the viral particle to bind the particle to the target molecule; And (V) separating particles not bound to the Cytokine molecule.
파아지 디스플레이를 이용하여 펩타이드 라이브러리를구축하고 이들 라이브러리를 스크리닝 하는 방법은 미국 특허 제 5,723,286 호, 제 5,432,018 호, 제 5,580,717 호, 제 5,427,908 호, 제 5,498,530 호, 제 5,770,434 호, 제 5,734,018 호, 제 5,698,426 호, 제 5,763,192 호 및 제 5,723,323호에 개시되어 있다.  Methods for constructing peptide libraries and screening these libraries using phage display are described in U.S. Pat. , 5,763,192 and 5,723,323.
바이포달 펩타이드 바인더를 유전자를 포함하는 발현 백터를 제작하는 방법은 당업계에 공지된 방법에 따라 실시될 수 있다. 예를 들어, 공지의 파아지미드 또는 파아지 백터 (예컨대, pIGT2, fUSE5, fAFFl, fd-CATl, m663, fdtetDOG, pHENl, pComb3, pComb8, pCANTAB 5E (Pharmacia) LamdaSurfZap, pIF4, PM48, PM52, PM54, fdH 및 p8V5)에 바이포달 펩타이드 바인더를 유전자를 삽입시켜 발현 백터를 제작할 수 있다.  The method of producing an expression vector comprising a bipodal peptide binder gene may be carried out according to methods known in the art. For example, known phagemid or phage vector (e.g. pIGT2, fUSE5, fAFFl, fd-CATl, m663, fdtetDOG, pHENl, pComb3, pComb8, pCANTAB 5E (Pharmacia) LamdaSurfZap, pIF4, PM48, PM52, PM54, fdH) And p8V5) by inserting a bipodal peptide binder gene, an expression vector can be prepared.
대부분의 파아지 디스플레이 방법이 필라멘트성 파아지를 이용하여 실시되지만, 람다 파아지 디스플레이 (W0 95/34683; 미국 특허 제 5,627,024호), T4파아지 디스플레이 (Ren et al. (1998) Gene 215: 439; Zhu (1997) CAN 33: 534) 및 T7 파아지 디스플레이 (미국 특허 제 5,766,905호)도 바이포달 펩타이드 바인더의 라이브러리를 구축하는 데 이용될 수 있다.  Although most phage display methods are performed using filamentous phage, lambda phage display (W0 95/34683; US Pat. No. 5,627,024), T4 phage display (Ren et al. (1998) Gene 215: 439; Zhu (1997) ) CAN 33: 534) and T7 phage display (US Pat. No. 5,766,905) can also be used to build a library of bipodal peptide binders.
백터 라이브러리를 적합한 숙주 세포에 도입시키는 방법은 다양한 형질전환 방법에 따라 실시될 수 있으며, 가장 바람직하게는 전기천공 (electroporation) 방법에 따라 실시된다 (참조: 미국 특허 제 5,186,800호, 제 5,422,272호, 제 5,750,373호), 본 발명에 적합한 숙주는 세포는 E. coli 와 같은 그람 음성 박테리아 세포이며, 적합한 E. coli 숙주는 JM101, E. coli K12 strain 294, E. coli strain W3110 및 E. coli XL-lBlue (Stratagene)을 포함하나, 이에 한정되는 것은 아니다. 숙주세포는 형질전환 전에 컴피턴스 세포로 준비하는 것이 바람직하다 (Sambn ik, J. et al . , Molecular Cloning. A Laboratory Manual 3rd ed. Cold Spring Harbor Press(2001)) , 형질전환된 세포의 선별은 일반적으로 항생제 (예컨대, 테트라사이클린 및 암피실린)를 포함하는 배지에서 배양하여 실시된다. 선별된 형질전환 세포를 헬퍼 파아지의 존재 하에서 추가적으로 배양하여 재조합 파아지 또는 파아지미드 바이러스 파티클을 생성시킨다. 상기 헬퍼 파아지 파아지로 적합한 것은, Ex 헬퍼 파아지 , M13-K07, M13-VCS 및 R408을 포함하나, 이에 한정되는 것은 아니다. 생물학적 타겟 분자와 결합하는 바이라스 파티클의 선별은 통상적으로 바이오패닝 과정을 통하여 실시될 수 있다 (Sambrook, J. et alᅳ, Molecular Cloning. A Laboratory Manual , 3rd ed. Cold Spring Harbor Press(2001); Clackson and Lowman , Phage Display, Oxford University Press(2004)). The method of introducing the vector library into a suitable host cell can be carried out according to a variety of transformation methods, most preferably according to the electroporation method (see US Pat. Nos. 5,186,800, 5,422,272, 5,750,373), suitable hosts are gram negative bacterial cells such as E. coli, and suitable E. coli hosts are JM101, E. coli K12 strain 294, E. coli strain W3110 and E. coli XL-lBlue. (Stratagene), including but not limited to. Host cells are preferably prepared as competent cells prior to transformation (Sambn ik, J. et al., Molecular Cloning. A Laboratory Manual 3rd ed. Cold Spring Harbor Press (2001)), selection of transformed cells Generally include antibiotics (eg, tetracycline and ampicillin) It is carried out by culturing in the medium. Selected transformed cells are further cultured in the presence of helper phage to generate recombinant phage or phagemid virus particles. Suitable helper phage phages include, but are not limited to, Ex helper phage, M13-K07, M13-VCS, and R408. The selection of virus particles binding to the biological target molecule can typically be carried out via a biopanning process (Sambrook, J. et al., Molecular Cloning. A Laboratory Manual, 3rd ed. Cold Spring Harbor Press (2001); Clackson and Lowman, Phage Display, Oxford University Press (2004).
본 발명의 또 다른 양태에 따르면, 본 발명은 상술한 Cytokine- 바이포달 펩타이드 바인더를 코딩하는 핵산 분자를 제공한다.  According to another aspect of the present invention, the present invention provides a nucleic acid molecule encoding the above-described Cytokine-bipodal peptide binder.
본 발명의 다른 양태에 따르면, 본 발명은 Cytokine-바이포달 펩타이드 바인더를 코딩하는 핵산 분자를 포함하는 Cytokine-바이포달 펩타이드 바인더의 발현용 백터를 제공한다.  According to another aspect of the present invention, the present invention provides a vector for expression of a Cytokine-bipodal peptide binder comprising a nucleic acid molecule encoding a Cytokine-bipodal peptide binder.
본 발명의 다른 양태에 따르면, 본 발명은 Cytokine-바이포달 펩타이드 바인더의 발현용 백터를 포함하는 형질전환체를 제공한다.  According to another aspect of the present invention, the present invention provides a transformant comprising a vector for expression of a Cytokine-bipodal peptide binder.
본 명세서에서 용어 "핵산 분자" 는 DNA (gDNA 및 cDNA) 그리고 RNA 분자를 포괄적으로 포함하는 의미를 갖으며, 핵산 분자에서 기본 구성 단위인 뉴클레오타이드는 자연의 뉴클레오타이드뿐만 아니라, 당 또는 염기 부위가 변형된 유사체 (analogue)도 포함한다 (Scheit, Nucleotide Analogs, As used herein, the term “nucleic acid molecule” is meant to encompass DNA (gDNA and cDNA) and RNA molecules inclusively, and the nucleotides, which are the basic structural units in nucleic acid molecules, are naturally modified nucleotides, as well as modified sugar or base sites. Analogues (Scheit, Nucleotide Analogs,
John Wiley, New York(1980); Uhlman 및 Peyman , Chemical Reviews,John Wiley, New York (1980); Uhlman and Peyman, Chemical Reviews,
90:543-584(1990)). 90: 543-584 (1990).
본 발명의 바람직한 구현예에 따르면, 본 발명의 백터는 Cytokine- 바이포달 펩타이드 바인더를 코딩하는 핵산 분자 이외에 상기 핵산 분자에, 전사를 진행시킬 수 있는 강력한 프로모터 (예컨대, tac 프로모터, lac 프로모터, 7adJV5 프로모터, Ipp 프로모터 , ¾λ프로모터, pR x프로모터, rad 프로모터, amp프로모터, recA프로모터 , SP6 프로머터, trp프로모터 및 T7 프로모터 등), 해독의 개시를 위한 라이보좀 결합 자리 및 전사 /해독 종결 서열을 포함한다. According to a preferred embodiment of the present invention, the vector of the present invention is a powerful promoter capable of transferring transcription to the nucleic acid molecule in addition to the nucleic acid molecule encoding the Cytokine-bipodal peptide binder (e.g., tac promoter, lac promoter, 7adJV5 promoter , Ipp promoter, ¾ λ promoter, p R x promoter, rad promoter, amp promoter, recA promoter, SP6 promoter, trp promoter and T7 promoter, etc.), ribosomal binding site and transcription / detox termination sequence for initiation of translation Include.
본 발명의 바람직한 구현예에 따르면, 본 발명의 백터는 Cytokine- 바이포달 펩타이드 바인더를 코딩하는 핵산 분자의 5 '-방향쪽에 시그널 서열 (예컨대, pelB)를 추가적으로 포함할 수 있다. 또한, 본 발명의 바람직한 구현예에 따르면, 본 발명의 백터는 바이포달 펩타이드 바인더가 파아지의 표면에 잘 발현되었는지를 확인하기 위한 태깅 서열 (예컨대, myc tag)을 추가적으로 포함한다. According to a preferred embodiment of the invention, the vector of the invention is a signal on the 5'-direction of the nucleic acid molecule encoding the Cytokine-bipodal peptide binder. Sequences (eg, pelB) may be further included. In addition, according to a preferred embodiment of the present invention, the vector of the present invention further comprises a tagging sequence (eg, myc tag) for confirming that the bipodal peptide binder is well expressed on the surface of the phage.
본 발명의 바람직한 구현예에 따르면, 본 발명의 백터는 파아지 코트 단백질, 바람직하게는 M13 과 같은 필라멘트성 파아지의 유전자 m 또는 유전자 VI 코트 단백질올 코딩하는 유전자를 포함한다. ' 본 발명의 바람직한 구현예에 따르면, 본 발명의 백터는 박테리아의 복제원점 (예컨대, According to a preferred embodiment of the invention, the vector of the invention comprises a gene encoding a phage coat protein, preferably a gene of filamentous phage such as M13 or a gene VI coat protein. According to a preferred embodiment of the invention, the vector of the invention is the origin of replication of bacteria (e.g.
ColEl) 및 /또는 박테리오파아지의 복제원점을 포함한다. 한편, 본 발명의 백터는 선택표지로서 당업계에서 통상적으로 이용되는 항생제 내성 유전자를 포함할 수 있으며, 예를 들어 암피실린, 겐타마이신, 카베니실린, 클로람페니콜, 스트렙토마이신, 카나마이신, 게네티신, 네오마이신 및 테트라사이클린에 대한 내성 유전자를 포함할 수 있다. ColEl) and / or origin of replication of bacteriophage. On the other hand, the vector of the present invention may include antibiotic resistance genes commonly used in the art as a selection marker, for example, ampicillin, gentamicin, carbenicillin, chloramphenicol, streptomycin, kanamycin, geneticin, neo Resistance genes for mycin and tetracycline.
본 발명의 형질전환체는 바람직하게는 E. coli 와 같은 그람 음성 박테리아 세포이며, 적합한 E. coli숙주는 JM101, E. coli K12 strain 294 ; E. coli strain W3110 및 E. coli XL-lBlue (Stratagene)을 포함하나, 이에: 한정되는 것은 아니다. 본 발명의 백터를 숙주 세포 내로 운반하는 방법은, CaCl2 방법 (Cohen, S.N. et al. , Proc. Natl. Acac. Sci . USA, 9:2110- 2114(1973)), 하나한 방법 (Cohen, S.N. et al. , Proc. Natl. Acac. Sci. USA, 9:2110-2114(1973); 및 Hanahan, D., J. Mol . Biol. , 166: 557- 580(1983)) 및 전기 천공 방법 (미국 특허 제 5,186,800호, 제 5,422,272호, 제 5,750,373호) 등에 의해 실시될 수 있다. The transformants of the present invention are preferably Gram-negative bacterial cells such as E. coli, and suitable E. coli hosts include JM101, E. coli K12 strain 294 ; E. coli strain W3110 and E. coli XL-lBlue (Stratagene), including but not limited to: The method of carrying the vector of the present invention into a host cell includes the CaCl 2 method (Cohen, SN et al., Proc. Natl. Acac. Sci. USA, 9: 2110-2114 (1973)), one method (Cohen, SN et al., Proc. Natl. Acac. Sci. USA, 9: 2110-2114 (1973); and Hanahan, D., J. Mol. Biol., 166: 557-580 (1983)) and electroporation methods (US Pat. Nos. 5,186,800, 5,422,272, 5,750,373) and the like.
본 발명의 Cytokine-바이포달 펩타이드 바인더는 매우 낮은 수준 (예컨대, nM 수준)의 ¾ 값 (해리상수)을 나타내어, Cytokine 분자에 매우 높은 친화도를 나타내는 펩타이드를 제공한다. 하기 실시예에 기재된 바와 같이, 모노포달 방식으로 제작된 바인더와 비교하여 바이포달 펩타이드 바인더는 약 102-105 배 (바람직하게는, 약 103-104 배) 높은 친화도를 나타낸다. 본 발명의 Cytokine-바이포달 펩타이드 바인더는 의약으로서의 용도를 가질 뿐만 아니라, 생체 내 물질의 검출, 인 비보 분자 이미징, 인 비트로 세포 이미징 및 약물전달용 타겟팅을 하는 데 이용될 수 있으며, 에스코트 분자로도 이용될 수 있다 . Cytokine-bipodal peptide binders of the present invention exhibit very low levels (e.g., nM levels) of ¾ values (dissociation constants), providing peptides that exhibit very high affinity to Cytokine molecules. As described in the Examples below, bipodal peptide binders exhibit about 10 2 -10 5 times (preferably about 10 3 -10 4 times) high affinity compared to binders made in a monopodal manner. The Cytokine-bipodal peptide binder of the present invention not only has a use as a medicament, but also detects substances in vivo, in vivo molecular imaging, phosphorus It can be used to target cell imaging and drug delivery in vitro, and can also be used as an escort molecule.
본발명의 특징 및 이점을요약하면 다음과같다:  In summary, the features and advantages of the present invention are as follows:
( i ) 본 발명은 Cytokine 에 특이적으로 결합하는 Cytokine-BPB 를 제공한다.  (i) The present invention provides Cytokine-BPB that specifically binds to Cytokine.
(ii) 본 발명의 Cytokine-바이포달 펩타이드 바인더에서 구조안정성 부위의 양 말단에 결합되어 있는 이격된 (distal) 두 개의 Cytokine-타겟 결합 부위는 서로 협동적으로 (cooperatively), 시너직 (synerget ical ly)하게 타겟에 결합한다.  (ii) In the Cytokine-bipodal peptide binder of the present invention, two distant Cytokine-target binding sites bound to both ends of the structural stability site are cooperatively and synergistically. ) To the target.
(iii) 이에, 본 발명의 Cytokine-바이포달 펩타이드 바인더는 매우 낮은 수준 (예컨대, nM 수준)의 KD 값 (해리상수)을 나타내어, 타겟에 매우 높은 친화도를 나타낸다. (iii) The Cytokine-bipodal peptide binders of the present invention thus exhibit very low levels (eg, nM levels) of K D values (dissociation constants), resulting in very high affinity to the target.
(iv) 본 발명의 Cytokine-BPB 는 Cytokine 결합성 및 특이성에 기초하여 다양한 물질들을 세포표면 또는 세포 내로 운반할 수 있다.  (iv) Cytokine-BPB of the present invention can transport various substances into cell surface or cells based on Cytokine binding and specificity.
【도면의 간단한 설명】 [Brief Description of Drawings]
도 la 는 구조안정화 부위로서 β-헤어핀 (hairpin)을 포함하는 바이포달 펩타이드 바인더 (bipodal-peptide binder) 및 Cytokine— BPB 의 모식도를 나타낸다.  La shows a schematic diagram of a bipodal-peptide binder and Cytokine—BPB including β-hairpin as a structural stabilization site.
도 lb 는 구조안정화 부위로서 링커로 연결된 β-쉬트를 포함하는 Cytokine-BPB의 모식도를 나타낸다.  Lb shows a schematic diagram of Cytokine-BPB containing β-sheets linked by linkers as structural stabilization sites.
도 lc 는 구조안정화 부위로서 링커로 연결된 루이신 지퍼를 포함하는 Cytokine-BPB의 모식도를 나타낸다.  Figure lc shows a schematic of Cytokine-BPB containing leucine zippers linked by linkers as structural stabilization sites.
도 Id 는 구조안정화 부위로서 링커로 연결된 루이신 -리치 모티프 (leucine-rich motif)를 포함하는 Cytokine-BPB의 모식도를 나타낸다, 도 2 는 Cytokine-BPB 라이브러리를 클로닝하기 위한 전략을 나타낸다. IGT2 파이지미드 백터 맵에서, pelB 시그널서열, myc tag 은 목적 유전자가 파아지의 표면에 잘 발현되었는지를 확인하기 위한 태깅 서열이다. 프로모터로서 lac 프로모터가 이용되었다.  FIG. ID shows a schematic of Cytokine-BPB comprising leucine-rich motifs linked by linkers as structural stabilization sites, FIG. 2 shows a strategy for cloning Cytokine-BPB libraries. In the IGT2 pyrimid vector map, the pelB signal sequence, myc tag, is a tagging sequence to confirm that the target gene is well expressed on the surface of the phage. The lac promoter was used as a promoter.
도 3은 TNFa-BPB의 TNF— a 세포독성 억제 분석 결과이다. 도 4a 는 피르로넥틴 ED-B 단백질에 결합하는 특정 바이포달 펩타이드 바인더의 친화력을 측정한 결과이다. Figure 3 shows the results of TNF- a cytotoxic inhibition assay of TNFa-BPB. Figure 4a is a result of measuring the affinity of a specific bipodal peptide binder that binds to the pyronectin ED-B protein.
도 4b 는 바이포달 펩타이드 바인더 BPB 의 공동 작용 효과의 증명을 위한 친화력을 측정한 결과이다.  Figure 4b is the result of measuring the affinity for the demonstration of the synergistic effect of the bipodal peptide binder BPB.
도 5 는 바이포달 펩타이드 바인더에서 구조 안정화 부위를 트립토판 지퍼 대신 여러 β-헤어핀 모티프로 바꾸어 바이포달 펩타이드 바인더의 친화력을 측정한 결과이다.  5 is a result of measuring the affinity of the bipodal peptide binder by replacing the structural stabilization site in the bipodal peptide binder with various β-hairpin motifs instead of tryptophan zipper.
도 6 은 바이포달 펩타이드 바인더에서 구조 안정화 부위를 트립토판 지퍼 대신 루이신 지퍼로 바꾸어 바이포달 펩타이드 바인더의 친화력을 측정한 결과이다.  6 is a result of measuring the affinity of the bipodal peptide binder by replacing the structural stabilization site with leucine zipper instead of tryptophan zipper in the bipodal peptide binder.
도 7 은 VEGF 에 특이적인 바이포달 펩타이드 바인더를 선별하기 위하여 실시한 VEGF 단백질에 대한 바이오 패닝 결과이다.  FIG. 7 shows biopanning results for VEGF proteins performed to select bipodal peptide binders specific for VEGF.
도 8은 VEGF에 결합하는 특정 바이포달 펩타이드 바인더의 특이성을 측정한 결과이다. a) BPBIVEGF b)BPB2VEGF C)BPB3VEGF d)BPB4vEGF 8 is a result of measuring the specificity of a specific bipodal peptide binder that binds to VEGF. a) BPBIVEGF b) BPB2 VEGF C) BPB3 VEG F d) BPB4vE GF
도 9는 VEGF에 결합하는 특정 바이포달 펩타이드 바인더의 세포에서 Figure 9 shows in cells of specific bipodal peptide binders that bind VEGF.
VEGF 활성 억제 정도를 측정한 결과이다. It is the result of measuring the degree of inhibition of VEGF activity.
【실시예】 EXAMPLE
이하, 실시예를 통하여 본 발명을 더욱 상세히 설명하고자 한다. 이들 실시예는 오로지 본 발명을 보다 구체적으로 설명하기 위한 것으로서, 본 발명의 요지에 따라 본 발명의 범위가 이들 실시예에 의해 제한되지 않는다는 것은 본 발명이 속하는 기술분야에서 통상의 지식을 가진 자에게 있어서 자명할 것이다. 실시예  Hereinafter, the present invention will be described in more detail with reference to Examples. These examples are only for illustrating the present invention in more detail, it is to those skilled in the art that the scope of the present invention is not limited by these examples in accordance with the gist of the present invention. Will be self-evident. EXAMPLE
실험재료 및 실험방법 Experimental Materials and Methods
실시예 1: 라이브러리의 제작 Example 1: Construction of the Library
바이포달펩타이드 바인더 유전자제작및파아지미드 백터에의삽입 Bipodal Peptide Binder Gene Production and Insertion into Phagemid Vectors
두 개의 올리고뉴클레오티드 Beta-Fl ( 5 ' -TTCTATGCGGCCCAGCTGGCC Two oligonucleotides Beta-Fl (5'-TTCTATGCGGCCCAGCTGGCC
(N K)6GGATCTTGGACATGGGAAAACGGAAAA-3' ) 및 Beta-Bl (5'- AACAGTTTCTGCGGCCGCTCCTCC Τ00(ΜΝΝ)6Τ000ΤΤ00ΑΤ6Τ00ΑΤΤΤΤ000π-3 ' ) (N 은 A, T, G또는 C; K 는 G 또는 T; M 은 C 또는 A)를 합성하였다. 이중 사슬을 만들기 위해서 Beta-Fl 4 μΜ, Beta-Bl 4 μΜ, 2.5 mM dNTP 흔합액 4 ≠, ExTaq DNA 중합효소 1 ^(Takara, Seoul , Korea) 및 10XPCR 버퍼 5 μΚ 흔합하여 총 50 ^가 되도록 증류수를 첨가한 흔합액을 총 25 개 만들었다. 이 흔합액을 PCR 반응 (94°C에서 5분, 60싸이클: 30°C에서 30초, 72°C에서 30 초 및 72°C에서 7 분)을 하여 이중 사슬로 만든 후 PCR 정제 키트 (GeneAll, Seoul , Korea) 를 이용하여 정제하여, 바이포달 펩타이드 바인더 유전자를 얻었다. 바이포달 펩타이드 바인더에 삽입시킬 유전자를 pIGT2 파아지미드 백터 (Ig therapy, Chuncheon, Korea) 에 연결하기 위해 인서트 유전자와 pIGT2 파아지미드 백터에 제한효소를 처리하였다. 약 11 //g의 인서트 DNA 를 S/7/(New England Biolabs(NEB, Ipswich) 및 / ? /(ΝΕΒ, Ipswich)으로 각각 4 시간 씩 반응시킨 후 PCR 정제 키트를 이용하여 정제하였다. 또한, 약 40 j¾g의 piGT2 파아지미드 백터를 sni 및 Notl 으로 각각 4 시간 씩 반응시킨 후 CIAP Calf Intestinal Alkaline Phosphatase) (NEB, Ipswich)를 넣고 1 시간 동안 반웅시킨 후, PCR 정제 키트를 이용하여 정제하였다. 이들을 UV-가시광선 분광기 (Ultrospec 2100pro, Amersham Bioscience)로 정량하여 2.9 의 인서트 유전자를 T4 DNA 리가아제 (Bioneer, Dae j eon, Korea)를 이용하여 pIGT2 파아지미드 백터 12 / 과 18°C에서 15 시간 동안 연결한 후 에탄올로 침전시켜 TE 버퍼 100 i — DNA를 용해시켰다. 컴피턴트 세포의 준비 (NK) 6 GGATCTTGGACATGGGAAAACGGAAAA-3 ') and Beta-Bl (5'- AACAGTTTCTGCGGCCGCTCCTCC Τ00 (ΜΝΝ) 6 Τ000ΤΤ00ΑΤ6Τ00ΑΤΤΤΤ000π-3 ') (N is A, T, G or C; K is G or T; M is C or A). Beta-Fl 4 μΜ, Beta-Bl 4 μΜ, 2.5 mM dNTP mixture 4 ≠, ExTaq DNA polymerase 1 ^ (Takara, Seoul, Korea) and 5 μΚ of 10XPCR buffer to make a double chain, total 50 ^ A total of 25 mixtures with distilled water were made. It is a common hapaek PCR reaction: After creating (5 minutes at 94 ° C, 60 cycles at 30 ° C 30 seconds, at 72 ° from the C 30 sec and 72 ° C 7 minutes) to the double-stranded PCR purification kit (GeneAll , Seoul, Korea) to obtain a bipodal peptide binder gene. In order to connect the gene to be inserted into the bipodal peptide binder to the pIGT2 phagemid vector (Ig therapy, Chuncheon, Korea), the restriction gene was treated to the insert gene and the pIGT2 phagemid vector. Approximately 11 // g of insert DNA was reacted with S / 7 / (New England Biolabs (NEB, Ipswich) and /? / (ΝΕΒ, Ipswich) for 4 hours and purified using a PCR purification kit. The piGT2 phagemid vector of about 40 j¾g was reacted with sni and Notl for 4 hours, and then added with CIAP Calf Intestinal Alkaline Phosphatase (NEB, Ipswich) for 1 hour, and then purified using a PCR purification kit. These were quantified by UV-Vis spectroscopy (Ultrospec 2100pro, Amersham Bioscience) to 2.9 insert genes using T4 DNA ligase (Bioneer, Dae j eon, Korea) for 15 hours at pIGT2 phagemid vector 12 / and 18 ° C. After connecting, precipitated with ethanol to lyse TE buffer 100 i — DNA. Preparation of Competent Cells
E.coli XL1-BLUE 세포 (American Type Culture Col lection, Manassas, USA)를 LB 아가 -플레이트에 선상 도말하였다. 한천 평판 배지에서 자란 군락을 5 의 LB 배지에 접종한후 37°C에서 200 rpm의 속도로 흔합하면서 하루 동안 배양하였다. 배양된 10 의 세포들을 2 의 LB 배지에 접종하고 같은 방식으로 600 nm의 파장에서 흡광도가 0.3-0.4가 될 때까지 배양하였다. 배양된 플라스크를 30 분 동안 얼음에 방치한 후, 4°C 에서 4.000X g로 20 분 동안 원심 분리하여 가라앉은 세포들을 제외한 상층액을 모두 제거하고, 1 의 넁각된 멸균 증류수로 현탁시켰다. 이것을 다시 같은 방법으로 원심분리하고 상층액을 제거한 후, 1 «의 넁각된 멸균 증류수로 재현탁시키고 같은 방식으로 10% 글리세롤 용액 40 로 세척을 반복하여 원심 분리한 후, 마지막으로 10% 글리세를 용액 4 으로 현탁시킨 후' 200 ^씩 분주하여 액체 질소에 넁동시킨 뒤 -80°C에 보관하였다. 전기천공법 E. coli XL1-BLUE cells (American Type Culture Collection, Manassas, USA) were plated on LB agar-plates. After the inoculating colonies grown in an agar plate medium in LB medium with 5 heunhap at 37 ° C at a rate of 200 rpm and incubated for one day. Cultured 10 cells were inoculated in 2 LB medium and incubated in the same manner until the absorbance was 0.3-0.4 at a wavelength of 600 nm. The incubated flask was left on ice for 30 minutes, then centrifuged at 4.000 × g for 20 minutes at 4 ° C. to remove all supernatants except the sunk cells and suspended in 1 sterile sterile distilled water. This again Centrifuge in the same manner, remove the supernatant, resuspend in 1 «sterile sterile distilled water, repeat centrifugation with 10% glycerol solution 40 in the same manner, and finally 10% glycerol to solution 4 After suspension, the solution was dispensed by 200 ^, stirred in liquid nitrogen, and stored at -80 ° C. Electroporation method
파아지미드 백터 12 //g과 바이포달 펩타이드 바인더에 인서트 DNA 2.9 fig을 연결 반응시킨 100 /^를 25개로 분주하여 전기 천공을 수행하였다. 컴피턴트 세포를 얼음 위에서 녹이고, 200 ^의 컴피턴트 세포를 연결 반응시킨 용액 4 ^와 흔합한 후, 냉각하여 준비된 0.2 cm 의 큐벳에 넣은 뒤 1 분 동안 얼음 위에 두었다. 전기 천공기 (BioRad, Hercules, CA)를 200 Ω에서 25 uF 및 2.5 kV 의 조건으로 프로그램하고 준비된 큐벳의 물기를 제거하고 전기 천공기에 위치시킨 후 펄스를 주었다 (시간 상수는 4.5-5 msec). 이후 즉시 37°C로 준비한 20 mM 의 글루코오스가 포함된 1 의 LB 액체배지에 넣고 얻어진 총 25 의 세포를 100 ml 시험관에 옮겼다. 한 시간 동안 37°C에서 200 rpm 의 속도로 흔합하며 배양한 후 라이브러리의 개수를 측정하기 위해 10 峰 희석해서 암피실린 아가 배지에 도말하였다, 남은 세포를 1 의 LB 에 20 mM 글루코오스 및 50 / /ι 의 암피실린을 넣고 30°C에서 하루 동안 배양하였다. 4°C 에서 4,000Xg 로 20 분 동안 원심 분리하여 침전된 세포들을 제외한 상층액을 모두 제거하고, 40 1 의 LB 로 재현탁시킨 후 글리세를을 최종 농도 20% 이상 넣고 -80°C에 보관하였다. 라이브러리에서재조합파아지 생산과 PEG침전 Electroporation was performed by dispensing 25 // 100 of phagemid vector 12 and 100 / ^ reacted with insert 2.9 fig of insert DNA on a bipodal peptide binder. The competent cells were dissolved on ice, mixed with 200 ^ of competent cells and mixed with a solution 4 ^, and then placed in a cooled 0.2 cm cuvette and placed on ice for 1 minute. An electroporator (BioRad, Hercules, CA) was programmed at 200 Ω at 25 uF and 2.5 kV, drained the prepared cuvettes, placed in the electroporator and pulsed (time constant is 4.5-5 msec). Thereafter immediately placed in 1 LB medium containing 20 mM glucose prepared at 37 ° C. A total of 25 cells obtained were transferred to a 100 ml test tube. After incubation at 200 rpm at 37 ° C. for one hour, the cells were incubated with 10 χ dilution to measure the number of libraries and plated in ampicillin agar medium. The remaining cells in 1 LB of 20 mM glucose and 50 / / ι Ampicillin was added and incubated for one day at 30 ° C. After centrifugation at 4 ° C. at 4,000 × g for 20 minutes, the supernatant except for the precipitated cells was removed, resuspended in LB of 40 1 and glycerol was added at a final concentration of 20% or higher and stored at -80 ° C. . Recombinant Phage Production and PEG Precipitation in Libraries
-80°C에 저장된 바이포달 펩타이드 바인더 라이브러리에서 재조합 파아지를 생산하였다. 500 플라스크에 100 1 의 LB 액체배지에 암피실린 (50 β /ιηί) 및 20 mM 의 글루코오스를 넣은 후, -80°C 에 보관된 라이브러리 1 을 추가하여 한 시간 동안 37°C에서 150 rpm 의 속도로 흔합하며 배양하였다. 여기에 lxiO^ pfu 의 Ex 헬퍼 파아지 (Ig therapy, Chuncheon, Korea)를 넣고 다시 한 시간 동안 같은 조건으로 배양하였다. l,000Xg 로 10 분 동안 원심 분리하여 상층액을 제거하고 여기에 암피실린 (50 g/mi) 및 카나마이신 (25 «g/ )이 포함된 LB 액체배지 100 을 넣고 하루 동안 배양하여 재조합 파아지를 생산하였다. 배양액을 3,000Xg 로 10 분 동안 원심 분리하여 얻은 상층액 100 에 PEG/NaCl 25 ^을 흔합하고 얼음에 1 시간 동안 방치시킨 후, 4°C에서 20 분 동안 10, 000 X g 로 원심 분리하여 상층액은 조심스럽게 제거하고 2 의 PBS(pH 7„4)로 펠렛을 재현탁시켰다. 실시예 2: 단백질의 준비 Recombinant phage was produced in a bipodal peptide binder library stored at -80 ° C. Ampicillin (50 β / ιηί) and 20 mM glucose were added to a 100 1 LB medium in 500 flasks, and then library 1 stored at -80 ° C was added at a rate of 150 rpm at 37 ° C for one hour. Incubation was carried out in combination. Ex helper phage (Ig therapy, Chuncheon, Korea) of lxiO ^ pfu was added thereto and incubated under the same conditions for one hour. The supernatant was removed by centrifugation at 1,000 × g for 10 minutes and 100 LB medium containing ampicillin (50 g / mi) and kanamycin (25 «g /) was incubated for one day to produce recombinant phage. . The supernatant obtained by centrifuging the culture solution at 3,000Xg for 10 minutes was mixed with PEG / NaCl 25 ^ and left on ice for 1 hour, and then centrifuged at 10, 000 X g for 20 minutes at 4 ° C. The solution was carefully removed and the pellet resuspended in 2 PBS (pH 7'4). Example 2: Preparation of Protein
Human과 Mouse TNFa 유전자제작과 Expression vector에 삽입 Human and Mouse TNFa Gene Production and Insertion into Expression Vectors
한국생명공학 연구원에서 Human and Mouse TNFa 유전자를 공급받았다. 두 개의 primer 인 5' - AATAAAACATATGCTCAGATCATCTTCTC-3 ' (mTNF_F:L)와 5' -AT GGATCCCAGAGCAATGACTCC-3 ' (mTNF_Bl)을 합성하여 mTNF-Fl 20 pmol, mTNF-Bl 20 pmol , 2.5mM dNTP mixture 4μ 1 , Ex Taq DNA polymerase 1μ 1 (10 U), 10 PCR buffer 5μ 1 를 섞고 총 50μ 1 가 되도록 증류수를 추가한 흔합액을 만들었다. 이 흔합액을 PCR 반응 (94 5 분, 30 cycle: 55 °C 30 초와 72 0C 1 분, 940C 30 초)을 하여 mTNFa Insert 로 만든 후 PCR purification kit 을 이용하여 정제하였다. mTNFa Insert 유전자를 pET28b 백터에 연결하기 위해 mTNFa Insert 유전자와 pET28b 백터에 제한효소처리를 시행하였다. 약 2yg 의 Insert DNA 를 BamHIWe received human and mouse TNFa gene from Korea Biotechnology Research Institute. Two primers, 5'-AATAAAACATATGCTCAGATCATCTTCTC-3 '(mTNF_F: L) and 5'-AT GGATCCCAGAGCAATGACTCC-3' (mTNF_Bl), were synthesized to synthesize mTNF-Fl 20 pmol, mTNF-Bl 20 pmol, 2.5mM dNTP mixture 4μ 1, Ex Taq DNA polymerase 1μ 1 (10 U) and 10 PCR buffer 5μ 1 were mixed and distilled water was added to make a total solution of 50μ 1. This mixture was prepared by mTNFa insert by PCR reaction (94 5 min, 30 cycle: 55 ° C 30 sec and 72 0 C 1 min, 94 0 C 30 sec) and purified using a PCR purification kit. In order to link the mTNFa Insert gene to the pET28b vector, restriction enzyme treatment was performed on the mTNFa Insert gene and the pET28b vector. About 2yg's Insert DNA BamHI
(NEB)와 7½fc/(NEB)로 4 시간씩 반웅시킨 후 PCR purification kit 을 이용하여 정제하였다, 그리고 약 2ug 의 pET28b 백터를 BamHI (NEB)와 Λ¾/(ΝΕΒ)로 3 시간씩 반웅시킨 후 Calf Intestinal Alkaline Phosphatase(CIP)를 1 시간 반응한 후 PCR purification kit 을 이용하여 정제하였다. 이들을 molar ratio vector: Insert=l:3 으로 T4 DNA ligase(Bioneer)를 이용하여 18°C, 10 시간 동안 연결한 후 XL-1 competent cell 에 transformation 을 한 후 kanamycine agar 배지에 도말하였다. 한천 평판 배지에서 자란 집락을 5 ml 의 LB 배지에 접종한 뒤 37 °C 에서 200 rpm 의 속도로 섞어주면서 하룻동안 배양한 후 plasmid preparation kit 을 이용하여 plasmid 을 정제하여 sequencing 을 하여 클로닝이 성공했는지 확인하였다. Human TNFa 도 위와 똑 같은 방법으로 pET28b 백터에 삽입하였다。 After 4 hours of reaction with (NEB) and 7½fc / (NEB), the reaction was purified using a PCR purification kit, and about 2 ug of pET28b vector was reacted with BamHI (NEB) and Λ¾ / (ΝΕΒ) for 3 hours and then calf Intestinal Alkaline Phosphatase (CIP) was reacted for 1 hour and purified using a PCR purification kit. These were linked to a molar ratio vector: Insert = l: 3 using T4 DNA ligase (Bioneer) at 18 ° C for 10 hours, transformed into XL-1 competent cells, and plated on kanamycine agar. Colonies grown on agar plate medium were inoculated into 5 ml of LB medium, incubated at 37 rpm at 200 rpm for one day, and then purified by plasmid preparation using a plasmid preparation kit for sequencing. Check for success. Human TNFa was also inserted into the pET28b vector in the same manner.
TNFa 발현 및 정제 TNFa Expression and Purification
TNF-a를 클로닝한 pET28b vector를 BL21 cell 에 transformation 한 후 kanamycine agar 배지에 도말하였다. 한천 평판 배지에서 자란 집락을 kanamycine(25ug/ml)을넣어준 5ml LB 배지에 접종한 뒤 37 °C 에서 200 rpm의 속도로 섞어주면서 하룻동안 배양한 후 50ml kanamycine(25ug/ml ) LB 배지에 옮겨 3 시간 키웠다. 이렇게 키운 E.coli 을 2L LB 에 kanamycine(25ug/ml)을 넣고 50ml 키운 E.coli 를 넣고 0D=0.6-0.8 까지 키웠다. 그 다음 ImM i sopr opy 1 - β -D-t h i oga 1 ac t opyr anos i de ( I PTG) ¾· 넣어주어 370C 에서 200rpm 의 속도로 섞어주면서 8 시간 키웠다. 4,000 g 로 20 분간 원심 분리하여 가라앉은 세포들을 제외한 상층액을 모두 제거하고, lysis buffer (50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 5 mM imidazole)로 재부유시켰다, -80 °C 에 하루동안 보관한 후 Sonicator 를 이용하여 E.coli 용해시킨 후에 15,000 g로 1 시간 동안 원삼 분리하여 상층액을 Ni-NTA affinity resin 에 붙인다. Lysis buffer 로 resin 을 씻어 준 후 Elution buffer (50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 300 mM imidazole)을 이용하여 N—terminal His— tag TNFa 단백질을 떨어뜨려 모은다. 이렇게 모은 단백질을 superdex75 column 와 PBS(pH7.4) buffer 을 이용하여 gel filtration 을 하여 순도 높은 TNFa 단백질을 모은다, 실시예 3: 바이오 패닝 The pET28b vector cloned with TNF-a was transformed into BL21 cells and plated in kanamycine agar medium. Colonies grown on agar plate medium were inoculated in 5ml LB medium containing kanamycine (25ug / ml), incubated at 37 rpm for 200 rpm, and then transferred to 50ml kanamycine (25ug / ml) LB medium. Raised 3 hours. E. coli grown in 2L LB kanamycine (25ug / ml) and 50ml E. coli was added to 0D = 0.6-0.8. ImM i sopr opy 1 -β -Dt hi oga 1 ac t opyr anos i de (I PTG) ¾ · was added and mixed at 37 0 C at 200 rpm for 8 hours. Centrifugation was performed at 4,000 g for 20 minutes to remove all supernatants except the sunk cells and resuspended in lysis buffer (50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 5 mM imidazole) at -80 ° C. After storage for 1 day, dissolve E. coli using Sonicator, and remove 1 g of raw ginseng for 1 hour and attach the supernatant to Ni-NTA affinity resin. After washing the resin with Lysis buffer, N-terminal His-tag TNFa protein was collected using Elution buffer (50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 300 mM imidazole). The protein thus collected is subjected to gel filtration using a superdex75 column and PBS (pH7.4) buffer to collect high purity TNFa protein, Example 3: Bio panning
Cytokine 의 대표적인 단백질로서 TNF- α에 대하여 바이오 패닝을 하였다. 또한, ΒΡΒ 의 기본적인 작동을 확인하기 위한 모델 단백질로서 피브로넥틴 (Fibronectin) ED-B를 선택하였고, 이에 대하여도 바이오 패닝을 하였다.  Biopanning was performed for TNF-α as a representative protein of cytokine. In addition, Fibronectin ED-B was selected as a model protein for confirming the basic function of ΒΡΒ and biopanning was also performed.
상기 실시예 1 에서 제작한 BPB(Bipodal-peptide binder) 라이브러리를 각각의 단백질에 대해 5 차에 걸쳐 바이오패닝을 실시하고 각 패닝 단계에서 회수한 파아지 펩타이드들의 output phage/ input phage 비 (ratio)를 결정하였다. Biopanning was performed on the BPB (Bipodal-peptide binder) library prepared in Example 1 for each protein at five times, and The output phage / input phage ratio of the phage peptides recovered in the panning step was determined.
상기 단백질 (5 /g/ )을 96 웰 ELISA 폴레이트 (Corning)의 10 개의 웰에 50 ^씩 넣은 후, 4°C에서 하룻밤 동안 방치하였고, 다음날 2% BSA 를 사용하여 상온에서 2 시간 동안 블로킹한 후, 용액을 모두 버리고 0.1% PBST 로 3 회 세척하였다. 여기에 바이포달 펩타이드 바인더 재조합 파아지 포함용액 800 ≠ 및 10% BSA 200 ^을 흔합하여 GPR 39 단백질에 결합한 10 개의 웰에 옮겨 상온에서 1 시간 동안 방치하였다. 10 개 웰의 용액을 모두 제거하고 0.1¾> PBST 로 10 회 세척한 뒤 0.2 M 글리신 /HCKpH 2.2) 1 ^을 각 웰당 50 씩 넣어 20 분간 파아지를 용리시키고 1 을 튜브에 모아 여기에 2M Tris-base(pH 9.0) 150. ^를 넣어 용액을 중화시켰다. 각 바이오 패닝마다 인풋 파아지 및 일루트 파아지의 수를 측정하기 위해 0D=0.7 인 XL-1 BLUE 세포에 섞어 주어 암피실린이 포함된 아가 배지에 도말하였다. 패닝을 반복하기 위해 10 의 Ε· coli XL1- BLUE 세포와 섞어 37°C에서 1 시간 동안 200 rpm 의 속도로 흔합하며 배양하였다. 암피실린 (50 βg/mi) 및 20 mM 글루코오스를 흔합한 후, 2 i010pfu 의 Ex 헬퍼 파아지를 첨가하여 37°C에서 1 시간 동안 200 rpm 의 속도로 흔합하며 배양하였다. 배양액을 l,000Xg 로 10 분 동안 원심 분리한 후 상층액은 제거하고 침전된 세포들을 암피실린 (50 g/mi) 및 카나마이신 (25 이 포함된 40 LB 액체 배지로 재현탁하여 30°C에서The protein (5 / g /) was placed in 10 wells of 96 well ELISA folate (50 ^), and then allowed to stand overnight at 4 ° C., and blocked for 2 hours at room temperature using 2% BSA the next day. After that, the solution was discarded and washed three times with 0.1% PBST. The bipodal peptide binder recombinant phage containing solution 800 ≠ and 10% BSA 200 ^ were mixed, transferred to 10 wells bound to the GPR 39 protein, and allowed to stand at room temperature for 1 hour. Remove all 10 wells, wash 10 times with 0.1¾> PBST, elute phage for 20 min with 0.2 M glycine / HCKpH 2.2) 1 ^ per well for 50 min, collect 1 into tube, and add 2M Tris- base (pH 9.0) 150. ^ was added to neutralize the solution. Each biopanning was mixed with XL-1 BLUE cells with 0D = 0.7 in order to determine the number of input phages and eluent phages and plated in agar medium containing ampicillin. In order to repeat panning, the cells were mixed with 10 Ε · coli XL1-BLUE cells and incubated at 37 ° C for 1 hour at 200 rpm. Ampicillin (50 βg / mi) and 20 mM and then the combined common glucose, Ex helper phage was added to the 2 i0 10 pfu by heunhap at a rate of 200 rpm for one hour at 37 ° C, and were cultured. After centrifugation of the culture broth at l, 000Xg for 10 minutes, the supernatant was removed and the precipitated cells were resuspended in 40 LB liquid medium containing ampicillin (50 g / mi) and kanamycin (25) at 30 ° C.
200 rpm 의 속도로 흔합하며 하루 동안 배양하였다. 배양액을 4,000><g, 20 분 및 4°C의 조건으로 원심 분리하였다. 상층액에 8 m£의 5x PEG/NaCl[20% PEG(w/v) 및 15% NaCl(w/v)]을 첨가한 후 4°C에서 1시간 동안 정치시켰다. 원심분리 후 PEG 용액을 완전히 제거하고 1 의 PBS 용액으로 파아지 펩타이드 펠렛을 녹인 다음 2차 바이오패닝에 사용하였다. 각 패닝 단계마다 상기와 동일한 방법을 사용했으몌 세척과정만 단계별로 각각 20회 및 30회 (0.1% PBST) 증가시켰다. 실시예 4: T F-α 또는 피브로넥틴 ED— B 에 특이적인 파아지 펩타아드 검색 (파아지 ELISA) 아웃풋 파아지 /인풋 파아지 비율이 가장 높은 바이오패닝 단계에서 회수한 파아지를 XL1— BLUE 세포에 감염시킨 후 플라크가 폴레이트당 100- 200 개 정도가 되도록 도말하였다. 멸균된 팁을 이용하여 플라크 60 개를 2 1 ^의 LB-암피실린 (50 j g/ ) 배양액에 접종한 후 37°C에서 5 시간 동안 진탕 배양하여 0D=0.8-1 에서 5X109 pfu 의 Ex 헬퍼 파아지를 첨가하여 37°C에서 1 시간 동안 200 rpm 의 속도로 흔합하며 배양하였다. 배양액을 l,000Xg로 10 분 동안 원심 분리한 후 상층액은 제거하고 침전된 세포들을 암피실린 (50 g/mt) 및 카나마이신 (25 «g/mO이 포함된 1 의 LB 액체배지로 재현탁하여 30°C에서 200 rpm 의 속도로 흔합하며 하루 동안 배양하였다. 배양액을 10,000Xg, 20분 및 4°C의 조건으로 원심 분리하여 상층액을 회수한 후 의 탈지 우유를 넣고 이를 파아지 펩타이드 검색에 사용하였다. 96 웰 ELISA 플레이트에 5 «g/m의 GPR 39 또는 Fibronectin ED-B 을 각 웰당 50 ^씩 30 개의 웰에 넣고, 또한 10 //g/m£의 BSA 을 각 웰당 50 씩 30 개의 웰에 넣어 4°C에서 하루 동안 방치하였다. 다음날 모든 웰을 0.1% PBST 로 3 회 세척하고 PBS 로 희석한 2% 탈지 우유를 사용하여 상온에서 2 시간 동안 블로킹한 뒤, 용액을 모두 버리고 0,1% PBST 로 3 회 세척하였다. 각 클론별로 증폭된 파아지 펩타이드 용액 100 ^씩을 모든 웰에 분주하고 27°C에서 1 시간 30분 동안 정치하였다. 0,1% PBST 용액으로 5 회 세척한 다음 HRP-컨쥬게이트 항 -M13 항체 (GE Healthcare)를 1:1,000 으로 회석하여 271:에서 1 시간 동안 반웅시켰다。 0.1% PBST로 5회 세척한 후 TMB용액 100 μί를 분주하여 발색반웅을 유도한 다음 100 의 1 M HC1 를 첨가하여 반웅을 중지시켰다. 450 nm 에서 흡광도를 측정하여 BSA 에 비해 흡광도가 높은 클론들을 선택하였다, 이들의 파아지를 XL1 세포에 감염시킨 후 플라크가 플레이트당 100-200 개 정도가 되도록 도말하였다. 멸균된 팁을 이용하여 플라크를 4 의 LB- 암피실린 (50 ^g/m^) 배양액에 접종한 후 37°C에서 하루 동안 진탕 배양하여 플라스미드 프랩 키트을 이용하여 플라스미드를 정제하여 시뭔싱을 의뢰하였다 (Genotech, Dae j eon, Korea) . 시퀀싱 프라이머는 백터 시뭔스인 5 ' -GATTACGCCAAGC1TTGGAGC-3 '을 사용하였다 . 실시예 5: 바인딩 어세이 DNA 시퀀싱에서 중복되어 나온 ED-B 에 특이적인 바이포달 펩타이드 바인더 펩타이드를 합성 (애니젠, 한국)을 하였다. 친화도의 측정은 BIAcore X(Biacore AB, Uppsala, Sweden)를 이용하여 수행하였다. ED-B 는 스트랩타비딘 SA 칩 (Biacore)에 바이오틴 -EDB 을 2,000 RU 만큼 홀려주어 고정시켰다. 러닝 버퍼로는 PBS(pH 7.4)을 사용하였고, 플로우는 분당 30 μί로— 홀리면서 여러 농도로 동력학을 측정한 후 BIAevaluation 소프트웨어 (Biacore AB, Uppsala, Sweden)로 친화도를 계산하였다. 실시예 6: TNF-α의 세포독성 억제 실험 The mixture was incubated for one day at a speed of 200 rpm. Cultures were centrifuged at 4,000><g, 20 min and 4 ° C. To the supernatant was added 8 m £ of 5x PEG / NaCl [20% PEG (w / v) and 15% NaCl (w / v)] and then left at 4 ° C. for 1 hour. After centrifugation, the PEG solution was completely removed and the phage peptide pellets were dissolved in 1 PBS solution and used for the second biopanning. The same method was used for each panning step, but the washing process was increased 20 times and 30 times (0.1% PBST), respectively, step by step. Example 4: Phage Peptide Search Specific for T F-α or Fibronectin ED—B (Phase ELISA) Phages recovered at the biopanning stage with the highest output phage / input phage ratio were infected with XL1-BLUE cells and plated at about 100-200 plaques per folate. 60 plaques were inoculated into a 2 1 ^ LB-ampicillin (50 jg /) medium using a sterile tip and shaken incubated at 37 ° C for 5 hours to exert 5X10 9 pfu of ex helper phage at 0D = 0.8-1. The mixture was incubated at 37 ° C for 1 hour at a speed of 200 rpm. The culture was centrifuged at l, 000Xg for 10 minutes, then the supernatant was removed and the precipitated cells were resuspended in 1 LB liquid medium containing ampicillin (50 g / mt) and kanamycin (25 «g / mO). The mixture was incubated for one day at a speed of 200 rpm at ° C. The culture solution was centrifuged at 10,000 × g, 20 minutes and 4 ° C. to recover the supernatant, and then skim milk was added and used for phage peptide search. In a 96 well ELISA plate, add 5 «g / m of GPR 39 or Fibronectin ED-B to 30 wells at 50 ^ per well, and 10 // g / m £ BSA to 30 wells at 50 each well. And left for 4 days at 4 ° C. The next day all wells were washed three times with 0.1% PBST and blocked for 2 hours at room temperature using 2% skim milk diluted with PBS, then discarded all solutions and 0,1% Washed three times with PBST 100 ^ each phage peptide solution amplified for each clone All wells were dispensed and left for 1 hour and 30 minutes at 27 ° C. 5 washes with 0,1% PBST solution followed by dilution of HRP-conjugate anti-M13 antibody (GE Healthcare) 1: 1,000 to 271 : The reaction was stopped for 5 hours with 0.1% PBST, followed by dispensing 100 μί of TMB solution to induce color reaction, and then stopping reaction by adding 1 M HC1 of 100. BSA was measured at 450 nm. Clones with high absorbance were selected, compared to 100-200 plaques per plate after infecting their phage with XL1 cells, using a sterile tip to plaque 4 LB-ampicillin (50 ^). g / m ^) was inoculated into the culture solution and shaken at 37 ° C. for one day to purify the plasmid using the plasmid flap kit (Genotech, Dae j eon, Korea). 5 '-GATTACG CCAAGC1TTGGAGC-3 'was used. Example 5: Binding Assays A bipodal peptide binder peptide specific to ED-B overlapped in DNA sequencing was synthesized (Anigen, Korea). Affinity was measured using BIAcore X (Biacore AB, Uppsala, Sweden). ED-B was immobilized with as much as 2,000 RU of Biotin-EDB on a Straptavidin SA chip (Biacore). PBS (pH 7.4) was used as the running buffer, and the flow was measured at various concentrations at 30 μί / min and the affinity was calculated using BIAevaluation software (Biacore AB, Uppsala, Sweden). Example 6: Cytotoxicity Inhibition of TNF-α
합성한 TNF-a-BPP 가 TNF- a의 세포독성 억제 실험을 TNF- a sensitive 세포인 L929 fibroblast 를 이용하여 실험을 하였다. L929 세포를 105 개를 96 well plate 에 넣은 다음에 12 시간 후에 TNF-α와 TNF- a-BPB 를 5 uM 로 처리한 후에 20 시간 후에 MTT solution 을 처리하여 세포독성 억제 정도를 측정하였다. 실험 결과 Cytotoxicity inhibition of TNF-a-BPP synthesized TNF-a was performed using L929 fibroblast, a TNF-a sensitive cell. After 10 5 L929 cells were placed in a 96 well plate, after 12 hours, TNF-α and TNF-a-BPB were treated with 5 uM, and after 20 hours, MTT solution was used to measure the cytotoxicity. Experiment result
실시예 7: 바이포달 펩타이드 바인더 라이브러리의 제작 Example 7: Construction of Bipodal Peptide Binder Library
바이포달 펩타이드 바인더의 구조 안정화 부위로는 안정한 베타- 헤어핀 모티프를 사용하였다. 특히 트립토판-트립토판 아미노산의 상호 작용에 의해 베타-헤어핀 모티프 구조를 안정하게 이루어 주는 트립토판 지퍼 (Andrea et al . , Proc. Natl. Acad. Sci. 98 :5578-5583(2001))을 이용하였다。 뼈대인 트립토판 지퍼의 N- 및 C-말단 부분에 각각 6 개 아미노산을 무작위로 배열함으로써 두 부분에 가변적 부위를 생성하였다 (도 la). 이를 바이포달 펩타이드 바인더라고 명명하였으며 양쪽의 가변적 부위를 가지고 있어 항원에 공동작용으로 붙을 수 있어 높은 친화력 및 특이성을 가질 수 있다. 또한, 바이포달 펩타이드 바인더의 구조 안정화 부위는 도 lb 내지 도 le와 같이 여러 가지로 구성될 수 있다.  As the structure stabilization site of the bipodal peptide binder, a stable beta-hairpin motif was used. In particular, tryptophan zippers (Andrea et al., Proc. Natl. Acad. Sci. 98: 5578-5583 (2001)), which stabilize the beta-hairpin motif structure by the interaction of tryptophan-tryptophan amino acids, were used. Variable regions were created in two portions by randomly arranging six amino acids in each of the N- and C-terminal portions of the tryptophan zipper (FIG. La). This is called a bipodal peptide binder and has variable regions on both sides so that it can be cooperatively attached to the antigen and thus have high affinity and specificity. In addition, the structure stabilization site of the bipodal peptide binder may be configured in various ways as shown in FIGS.
합성한 2 개의 무작위 서열 올리고뉴클레오티드를 PCR 반응을 통해 이중 사슬로 만든 후 제한효소인 5//I 및 Not\ 으로 자른 후 pIGT2 파아지미드 백터에 클로닝을 하여 8X108 이상의 라이브러리를 구축하였다 (도 2). 실시예 8: 바이오 패닝 결과 Two random sequence oligonucleotides were synthesized into double chains by PCR, cut into restriction enzymes 5 // I and Not \, and cloned into pIGT2 phagemid vector to construct a library of 8 × 10 8 or more (FIG. 2). . Example 8: Bio Panning Results
바이포달 펩타이드 바인더 라이브러리를 피브로넥틴 ED-B 또는 TNF- α 단백질에 대해 3-5 차에 걸쳐 바이오 패닝을 실시하고 각 패닝 단계에서 회수한 파아지 펩타이드들의 아웃풋 파아지 /인풋 파아지의 비율을 결정하였다 (표 la 및 lb).  The bipodal peptide binder library was subjected to biopanning three to five times for fibronectin ED-B or TNF-α protein and the ratio of output phage / input phage of phage peptides recovered at each panning step was determined (Table la And lb).
【표 la] [Table la ]
피브로넥틴 ED-B단백질에 대한 바이오 패닝 결과 Biopanning Results for Fibronectin ED-B Protein
Figure imgf000029_0001
Figure imgf000029_0001
【표 lb] [Table lb]
TNF-α 단백질에 대한 바이오 패닝 결과  Biopanning Results for TNF-α Proteins
Figure imgf000029_0002
실시예 9: 타겟에 특이적인 파아지 펩타이드 검색 (파아지 ELISA) 및 시퀀성 각 라이브러리의 패닝 단계중 아웃풋 /인풋의 비율이 가장 높은 단계에서 회수한 파아지를 플라크 형태로 확보하였다. 각 플라크로부터 60 개의 파아지를 증폭시킨 후 BSA 에 대해 ELISA를 수행하였다. BSA 에 비해 흡광도가 높은 클론들을 선택하여 DNA 시뭔싱을 의뢰하였다. 이로부터 중복된 각각의 단백질에 특이적인 펩타이드 시뭔스를 얻었다 (표
Figure imgf000029_0002
Example 9 Phage Peptide Search (Phase ELISA) Specific to the Target and Sequencing Phage recovered at the highest output / input ratio during the panning step of each library was obtained in plaque form. ELISA was performed on BSA after amplifying 60 phages from each plaque. Clones with higher absorbance than BSA were selected and requested for DNA sequencing. From this a peptide sequence specific to each overlapped protein was obtained (Table
2a 및 표 2b). 2a and Table 2b).
【표 2a] Table 2a
Figure imgf000030_0001
실시예 10: TNF-a 세포독성 억제 실험
Figure imgf000030_0001
Example 10 TNF-a Cytotoxicity Inhibition Experiment
TNF-a sensitive 한 세포인 L929 세포를 이용한 TNFa-BPB 의 억제 실험을 진행하였다. TNFa-BPB 를 5 uM 을 TNF-a와 같이 투여하였을 때 의미있게 아픕토시스가 억제됨을 볼 수 있다 (도 3). 실시예 11: 피브로넥틴 ED-B의 친화도의 측정  Inhibition experiment of TNFa-BPB was performed using L929 cells, which are TNF-a sensitive cells. TNFa-BPB can be seen that 5 uM administered with TNF-a significantly inhibited athetosis (FIG. 3). Example 11: Determination of the affinity of fibronectin ED-B
피브로넥틴 ED-B 에 대한 상기 펩타이드를 합성하여 SPR Biacore system(Biacore AB, Uppsala, Sweden)을 이용하여 친화도를 측정하였다. 피브로넥틴 ED-B 에 대한 친화도를 측정한 결과 펩타이드 1 은 620 nM 를 나타내었고, 펩타이드 2 는 75 nM 를 나타내었으며, 펩타이드 3 은 2,5 μΜ을 나타내었다 (도 4a). 실시예 12: SPRCSurface Plasmon Resonance)에 의한 공동 작용 효과 확인 바이포달 펩타이드 바인더의 항원에 대한 공동 작용 효과를 증명하기 위해서 친화력이 가장 좋은 표 2a 의 ED-B에 대한 펩타이드 2 의 N- 및 C- 말단 한쪽 부위만 각각 제거한 펩타이드를 합성하여 친화력을 측정하였다. N-말단 부분은 592 μΜ을 가지며 C-말단 부분은 12.8 μΜ을 나타내었다 (도 4b). 바이포달 펩타이드 바인더에서 양발 (bipodal)을 가지고 있음으로써 나타내는 공동 작용 효과는 43 nM의 친화력임을 증명하였다 (도 4a). 실시예 13: 다른 β-헤어핀에 대한 바인딩 어세이 The peptide for fibronectin ED-B was synthesized and affinity was measured using the SPR Biacore system (Biacore AB, Uppsala, Sweden). As a result of measuring affinity for fibronectin ED-B, peptide 1 showed 620 nM, peptide 2 showed 75 nM, and peptide 3 showed 2,5 μΜ (FIG. 4A). Example 12: Confirmation of the synergistic effect by SPRCSurface Plasmon Resonance In order to demonstrate the co-action effect on the antigen of the bipodal peptide binder, a peptide was obtained by synthesizing a peptide in which only one portion of the N- and C-terminus of the peptide 2 to ED-B of Table 2a having the best affinity was synthesized. The N-terminal portion had 592 μΜ and the C-terminal portion showed 12.8 μΜ (FIG. 4B). The synergistic effect exhibited by having bipodal in the bipodal peptide binder proved to be an affinity of 43 nM (FIG. 4A). Example 13: Binding Assays for Other β-Hairpins
트립토판 지퍼 이외에 다른 β-헤어핀 골격인 GBlm3 및 HP7 에 ED- B 에 특이적으로 결합하는 Peptide2 의 Nᅳ말단 시뭔스 (HCSSAV)와 C-말단 시퀀스 (IIRLEQ)를 가지도록 펩타이드를 합성하였다 (애니젠, 한국). 즉, 트립토판 지퍼를 포함한 바이포달 펩타이드 바인더의 시¾스는 HCSSAVGSWTWENGK T KGI IRLEQ 이며 GBlm3 을 포함한 바이포달 펩타이드 바인더는 HCSSAVG KWTYNPATGKFTVQEGnRLEQ 이고, HP7 을 포함한 바이포달 펩타이드 바인더는 HCSSAVGKTWNPA GKWTEGIIRLEQ 이다. 각 펩타이드의 친화도는 BIAcore X(Biacore AB, Uppsala, Sweden)를 사용하여 측정하였다. 스트랩타비딘 SA 칩 (Biacore AB, Uppsala, Sweden)에 비오틴 -EDB 를 2,000 RU 만큼 흘려주어 고정시켰다. 러닝 버퍼로는 PBS(pH 7.4)를 사용하였고 플로우는 분당 30 μί로 홀리면서 여러 농도로 동력학을 측정한 후 BIAevaluation으로 친화도를 계산하였다. 친화도를 측정한 결과 GBlm3가 70 nM, HP7 이 84 nM 로 트립토판 지퍼 (43 nM)와 비슷한 친화력을 가짐을 확인하였다 (도 5). 이는 모든 안정한 β-헤어핀 모티프가 구조 안정화 부위로서 가능함을 증명하는 결과이다. 실시예 14: 구조안정화 부위로서 루이신 지퍼를 포함하는 바이포달 펩타이드 바인더에 대한 바인딩 어세이  In addition to tryptophan zippers, peptides were synthesized to have N-terminal sequences (HCSSAV) and C-terminal sequences (IIRLEQ) of Peptide2 that specifically bind ED-B to other β-hairpin backbones, GBlm3 and HP7 (Anigen). , Korea). That is, the sequence of the bipodal peptide binder including tryptophan zipper is HCSSAVGSWTWENGK T KGI IRLEQ, the bipodal peptide binder including GBlm3 is HCSSAVG KWTYNPATGKFTVQEGnRLEQ, and the bipodal peptide binder including HP7 is HCSSAVGKTWNPA GKWTEGIQ. The affinity of each peptide was measured using BIAcore X (Biacore AB, Uppsala, Sweden). Biotin-EDB was flowed onto the straptavidin SA chip (Biacore AB, Uppsala, Sweden) by 2,000 RU and fixed. PBS (pH 7.4) was used as the running buffer, and the flow was measured at various concentrations while the flow was held at 30 μί / min and the affinity was calculated by BIAevaluation. As a result of measuring the affinity, it was confirmed that GBlm3 had affinity similar to tryptophan zipper (43 nM) with 70 nM and HP7 with 84 nM (FIG. 5). This is the result demonstrating that all stable β-hairpin motifs are possible as structure stabilization sites. Example 14 Binding Assay for Bipodal Peptide Binders Comprising a Leucine Zipper as Structural Stabilization Site
β-헤어핀 골격 대신 구조안정화 부위로서 루이신 지퍼에 ED-B 에 특이적으로 결합하는 펩타이드 2 의 Ν—말단 시¾스0¾:53 )와 C-말단 시퀀스 (IIRLEQ)를 가지도특 CSSPIQGGSMKQLEDKVEELLSKNYHLENEVARLKKLVGER 및 I IRLEQGGSMKQLEDKVEELLSK YHLENEVARLKKLVGER 펩타이드를 합성하였다 (애니젠, 한국). 두 펩타이드를 다이머로 만든 다음 BIAcore X(Biacore AB, Uppsala, Sweden)를 사용하여 친화도를 측정하였다. 친화도를 측정한 결과, 루이신 지퍼는 5 μΜ 의 친화도를 나타내었고 이는 트립토판 지퍼 (43 ηΜ)의 비슷한 친화도보다 떨어지는 친화도이기는 하지만 루이신 지퍼도 바이포달 펩타이드 바인더의 구조 안정화 부위로서 기능할 수 있음을 알 수 있다 (도 6). In addition to the β-hairpin backbone, it has the N-terminal sequence 0 peptide: 53) and C-terminal sequence (IIRLEQ) of peptide 2 that specifically binds ED-B to the leucine zipper as a structural stabilization site. IRLEQGGSMKQLEDKVEELLSK YHLENEVARLKKLVGER peptide was synthesized (Anigen, Korea). The two peptides were dimerized and then BIAcore X (Biacore AB, Affinity was measured using Uppsala, Sweden). As a result of measuring affinity, the leucine zipper showed an affinity of 5 μΜ, which is lower than the similar affinity of tryptophan zipper (43 ηΜ), while leucine zipper also functions as a structural stabilizing site for bipodal peptide binders. It can be seen that (FIG. 6).
이상으로 본 발명의 특정한 부분을 상세히 기술하였는 바, 당업계의 통상의 지식을 가진 자에게 있어서 이러한 구체적인 기술은 단지 바람직한 구현 예일 뿐이며, 이에 본 발명의 범위가 제한되는 것이 아닌 점은 명백하다. 따라서, 본 발명의 실질적인 범위는 첨부된 청구항과 그의 등가물에 의하여 정의된다고 할 것이다. 실시예 15: 사이토카인 VEGF121에 특이적인 ΒΡΒ  Having described the specific part of the present invention in detail, it is apparent to those skilled in the art that the specific technology is merely a preferred embodiment, and the scope of the present invention is not limited thereto. Thus, the substantial scope of the present invention will be defined by the appended claims and equivalents thereof. Example 15 ΒΡΒ Specific for Cytokine VEGF121
VEGF121의 발현 및 정제 Expression and Purification of VEGF121
VEGF121 를 클로닝한 pET32a 백터 (Novagen)를 각각 AD494 세포에 형질전환한 후 암피실린이 포함된 아가 배지에 도말하였다. 한천 평판 배지에서 자란 군락을 암피실린 (25 /g/m£)이 포함된 5 ^의 LB 배지에 접종한 뒤 37°C에서 200 rpm 의 속도로 흔합하면서 하루 동안 배양한 후, 암피실린 (25 zg/ni£)이 포함된 50 의 LB 배지에 옮겨 3 시간 배양하였다. 배양한 E. coli 를 암피실린 (25 이 포함된 2 의 LB 에 접종하고 OD=0.6-0.8 까지 배양하였다. 이후 1 mM 이소프로필 -β-D- 키오갈락토피라노사이드 (IPTG)를 넣어주어 37°C에서 200 rpm 의 속도로 흔합하면서 8 시간 동안 배양하였다. 4,000Xg 로 20 분 동안 원심 분리하여 침전된 세포들을 제외한 상층액을 모두 제거하고, 라이시스 버퍼 (50 mM 소듐 포스페이트 (pH 8.0), 300 mM NaCl 및 5 mM 이미다졸)로 현탁시켰다. -80°C에 하루 동안 보관한 후 소니케이터를 이용하여 E. coli 를 용해시킨 후에 15,000Xg 로 1 시간 동안 원심 분리하여 상층액을 Ni-NTA 친화성 레진 (Elpisbio, Dae j eon, Korea)에 결합시킨다. 라이시스 버퍼로 레진을 세척한 후 일루션 버퍼 (50 mM 소듐 포스페이트 (pH 8.0), 300 mM NaCl 및 300 mM 이미다졸)을 이용하여 Trx-VEGF121 단백질을 용출시켜 획득하였다. 이렇게 획득한 단백질을 Superdex75 컬럼 (GE Healthcare, United Kingdom) 및 PBS(pH 7.4) 버퍼를 이용하여 겔 여과법 (gel filtration)으로 순도 높은 VEGF-Trx 단백질을 얻었다. 순수한 VEGF 을 얻기 위하여 트롬빈으로 VEGF 와 Trx(thioredoxin reductase) 사이를 잘라 VEGF121을 얻었다. VEGF의 바이오 패닝 방법 PET32a vector (Novagen) cloned from VEGF121 was transformed into AD494 cells and plated in agar medium containing ampicillin. After culture for one day while heunhap then inoculated with the colonies grown on the agar plate medium on LB medium ampicillin (25 / g / m £) the Domain include at 37 ° C at a rate of 200 rpm, ampicillin (25 zg / ni £) containing 50 LB medium and incubated for 3 hours. The cultured E. coli was inoculated in LB of ampicillin (2 containing 25 and incubated to OD = 0.6-0.8. Then, 1 mM isopropyl-β-D-kiogallactopyranoside (IPTG) was added 37 Incubate for 8 hours, mixing at 200 rpm at ° C. Centrifugation at 4,000 × g for 20 minutes to remove all supernatants except precipitated cells, Lysis buffer (50 mM sodium phosphate, pH 8.0), 300 mM NaCl and 5 mM imidazole), stored at −80 ° C. for one day, and then dissolved in E. coli using a sonicator, followed by centrifugation at 15,000 × g for 1 hour. Bind to NTA affinity resin (Elpisbio, Dae j eon, Korea) Wash the resin with Lysis buffer and then use the Illution buffer (50 mM sodium phosphate (pH 8.0), 300 mM NaCl and 300 mM imidazole) Obtained by eluting the Trx-VEGF121 protein. Vaginal filtration of gels using a Superdex75 column (GE Healthcare, United Kingdom) and PBS (pH 7.4) buffer filtration) to obtain high purity VEGF-Trx protein. To obtain pure VEGF, VEGF 121 was obtained by cutting between VEGF and Trx (thioredoxin reductase) with thrombin. Bio panning method of VEGF
정제한 VEGF(5 /zg/ )을 96 웰 ELISA 플레이트 (Corning)의 10 개의 웰에 50 ^씩 넣은 후, 4°C에서 하룻밤 동안 방치하였고, 다음날 2% BSA 를 사용하여 상온에서 2 시간 동안 블로킹한 후, 용액을 모두 버리고 0.1% PBST 로 3 회 세척하였다. 여기에 바이포달 펩타이드 바인더 재조합 파아지 포함용액 800 μ免 및 10% BSA 200 ^을 흔합하여 VEGF 가 결합한 10 개의 웰에 옮겨 상온에서 1 시간 동안 방치하였다. 10 개 웰의 용액을 모두 제거하고 0.1% PBST 로 10 회 세척한 뒤 0.2 M 글리신 /HCKpH 2.2) 1 을 각 웰당 50 씩 넣어 20 분간 파아지를 용리시키고 1 을 튜브에 모아 여기에 2M Tris-base(pH 9.0) 150 ^를 넣어 용액을 중화시켰다. 각 바이오패닝마다 인풋 파아지 및 일루트 파아지의 수를 측정하기 위해 0D=0.7 인 XL-1 BLUE 세포에 섞어 주어 암피실린이 포함된 아가 배지에 도말하였다. 패닝을 반복하기 위해 10 m£의 E. coli XL1-BLUE 세포와 섞어 37°C에서 1 시간 동안 200 rpm 의 속도로 흔합하며 배양하였다. 암피실린 (50 g/ml) 및 20 mM 글루코오스를 흔합한 후, 2X1010 pfu 의 Ex 헬퍼 파아지를 첨가하여 37°C에서 1 시간 동안 200 rpm 의 속도로 흔합하며 배양하였다. 배양액을 l,000Xg 로 10 분 동안 원심 분리한 후 상층액은 제거하고 침전된 세포들을 암피실린 (50 βg/mi) 및 카나마이신 (25 ^g/ )이 포함된 40 LB 액체 배지로 재현탁하여 30°C에서 200 rpm 의 속도로 흔합하며 하루 동안 배양하였다. 배양액을 4,000Xg, 20 분 및 4°C의 조건으로 원심 분리하였다. 상층액에 8 ^의 5x PEG/NaCl[20% PEG(w/v) 및 15% NaCl(w/v)]을 첨가한 후 4°C에서 1 시간 동안 정치시켰다, 원심분리 후 PEG 용액을 완전히 제거하고 1 의 PBS 용액으로 파아지 펩타이드 펠렛을 녹인 다음 2 차 바이오패닝에 사용하였다. 각 패닝 단계마다 상기와 동일한 방법을 사용했으며, 세척과정만 단계별로 각각 20회 및 30회 (0.1% PBST) 증가시켰다. VEGF에 특이적인 바이포달펩타이드 바인더의 특이성 축정 Purified VEGF (5 / zg /) was added to 10 wells of 96 well ELISA plate (Corning), and then allowed to stand overnight at 4 ° C., and then blocked for 2 hours at room temperature using 2% BSA the next day. After that, the solution was discarded and washed three times with 0.1% PBST. The bipodal peptide binder recombinant phage containing solution 800 μ 免 and 10% BSA 200 ^ were mixed and transferred to 10 wells in which VEGF was bound and left at room temperature for 1 hour. Remove all 10 wells, wash 10 times with 0.1% PBST, add 0.2 M glycine / HCKpH 2.2) 1 to each well and elute the phage for 20 minutes, collect 1 into the tube and add 2M Tris-base ( pH 9.0) 150 ^ was added to neutralize the solution. Each biopanning was mixed with XL-1 BLUE cells with 0D = 0.7 to measure the number of input phages and elution phages and plated in agar medium containing ampicillin. To repeat panning, 10 m £ of E. coli XL1-BLUE cells were mixed and incubated at 37 ° C for 1 hour at 200 rpm. Ampicillin (50 g / ml) and 20 mM and then the combined common glucose, Ex helper phage was added to the 2X10 10 pfu by heunhap at a rate of 200 rpm for one hour at 37 ° C, and were cultured. After centrifugation of the culture solution at 10,000 × g for 10 minutes, the supernatant was removed and the precipitated cells were resuspended in 40 LB liquid medium containing ampicillin (50 βg / mi) and kanamycin (25 ^ g /) at 30 ° C. The mixture was incubated at C at 200 rpm for one day. Cultures were centrifuged at 4,000 × g, 20 min and 4 ° C. 8 ^ of 5x PEG / NaCl [20% PEG (w / v) and 15% NaCl (w / v)] was added to the supernatant and allowed to stand at 4 ° C. for 1 hour. The phage peptide pellet was removed and dissolved in 1 PBS solution and used for secondary biopanning. The same method was used for each panning step, and the washing process was increased 20 times and 30 times (0.1% PBST), respectively, step by step. Establishment of Specificity of VEGF-Specific Bipodalpeptide Binders
VEGF 단백질에 특이적으로 결합하는 재조합 파아지를 여러 단백질에 대해서 특이성 검사를 ELISA 을 이용하여 시행하였다. 96-웰 ELISA 플레이트에 각각의 단백질을 5 을 50 ^씩 웰에 넣고 다음날 0.1¾ PBST(Tween-20)로 3 회 세척하고 2% BSA 를 사용하여 상온에서 2 시간 동안 블로킹을 한 후, 용액을 모두 버리고 0.1% PBST 로 3 회 세척하였다, 여기에 본 발명의 펩타이드를 가지는 재조합 파아지를 2% BSA 와 잘 흔합하여 100 ^씩 10개의 단백질이 결합되어 있는 웰에 분주하고 27°C에서 2 시간 동안 정치하였다. 0.1% PBST 용액으로 5 회 세척한 다음 HRP- 컨쥬게이션 항 -M13 항체 (GE Healthcare)를 1:1,000 으로 희석하여 27°C에서 1 시간 반웅시켰다. 0.1% PBST 로 5 회 세척한 후 TMB 용액 100 ^를 분주하여 발색반웅을 유도한 다음 1M HC1 100 을 첨가하여 반웅을 중지시킨 다음 450 nm에서 흡광도를 측정하였다. VEGF에 특이적인 바이포달펩타이드 바인더의 친화력 측정 Recombinant phage that specifically binds to VEGF protein was tested for specificity using ELISA. In a 96-well ELISA plate, each protein was placed in a well of 5 5 50 ^, washed three times with 0.1¾ PBST (Tween-20) the next day and blocked for 2 hours at room temperature using 2% BSA. Discard all and wash three times with 0.1% PBST. Recombinant phage with peptides of the present invention were well mixed with 2% BSA and dispensed into wells containing 10 proteins bound by 100 ^ for 2 hours at 27 ° C. It was political. After washing 5 times with 0.1% PBST solution, HRP-conjugated anti-M13 antibody (GE Healthcare) was diluted 1: 1,000 and reacted for 1 hour at 27 ° C. After washing 5 times with 0.1% PBST, TMB solution 100 ^ was dispensed to induce color reaction, and then 1M HC1 100 was added to stop reaction and absorbance was measured at 450 nm. Affinity Measurement of VEGF-specific Bipodalpeptide Binders
DNA 시뭔싱에서 중복되어 나온 VEGF 에 특이적인 바이포달 펩타이드 바인더 펩타이드를 합성 (애니젠, 한국)을 하였다. 친화도의 측정은 BIAcore XCBiacore AB, Uppsala, Sweden)를 이용하여 수행하였다. VEGF를 EDC/NHS 을 이용하여 CM5 칩 (Biacore)에 고정하였다. 러닝 버퍼로는 PBS(pH 7.4)을 사용하였고, 플로우는 분당 30 ^로 홀리면서 여러 농도로 동력학을 측정한 후 BIAevaluation 소프트웨어 (Biacore AB, Uppsala, Sweden)로 친화도를 계산하였다.  A bipodal peptide binder peptide specific to VEGF overlapped in DNA sequencing was synthesized (Anigen, Korea). Affinity was measured using BIAcore XCBiacore AB, Uppsala, Sweden). VEGF was fixed to CM5 chip (Biacore) using EDC / NHS. PBS (pH 7.4) was used as the running buffer, and the flow was measured at various concentrations while holding at 30 ^ per minute, and the affinity was calculated using BIAevaluation software (Biacore AB, Uppsala, Sweden).
VEGF활성 억제실험 (HUVEC증식분석) HUVEC 세포 (Human Umbilical Vein Endothelial Cell, ATCC)를 1%VEGF activity inhibition test (HUVEC proliferation assay) 1% of HUVEC cells (Human Umbilical Vein Endothelial Cell, ATCC)
FBS 가 들어간 M199 배지 (Gibco)에서 기아 (starvation)시킨 다음 96-웰 플레이트에 각 웰 당 5000 개의 세포를 부착시켰다. 12 시간 후에 여러 농도의 BPBIVEGF, BPB2VEGF, BPB3VEGF, BPB½GF 와 20ng/ml 의 VEGF165(R&D Systems)를 동시에 넣은 배지를 세포에 처리하였다, 그런 다음, 72 시간 후에 세포의 성장도를 측정하기 위한 EZ-cytox cell 생존도 분석 키트 (Daeil Labservice, 대한민국)를 이용하여 HUVEC 세포의 성장을 얼마나 저해했는지 측정하였다. 바이오 패닝 결과 Starvation in M199 medium (Gibco) with FBS was followed by attachment of 5000 cells per well to 96-well plates. After 12 hours, the cells were simultaneously treated with medium containing various concentrations of BPBIVEGF, BPB2VEGF, BPB3VEGF, BPB½GF and 20ng / ml of VEGF 165 (R & D Systems), and then after 72 hours, EZ- to measure the growth of cells. cytox cell viability analysis The kit (Daeil Labservice, South Korea) was used to measure how much inhibition of the growth of HUVEC cells. Bio Panning Results
바이포달 펩타이드 바인더 라이브러리를 VEGF 에 대해 4 차에 걸쳐 바이오 패닝을 실시하고 각 패닝 단계에서 회수한 파아지 펩타이드들의 아웃풋 파아지 /인풋 파아지의 비율을 결정하였다 (도 7). 타겟에 특이적인파아지 펩타이드 검색 (파아지 ELISA) 및시뭔싱  The bipodal peptide binder library was subjected to biopanning four times for VEGF and the ratio of output phage / input phage of phage peptides recovered in each panning step was determined (FIG. 7). Target specific phage peptide search (phage ELISA) and sequence
각 라이브러리의 패닝 단계증 아웃풋 /인풋의 비율이 가장 높은 단계에서 회수한 파아지를 플라크 형태로 확보하였다. 각 플라크로부터 60 개의 파아지를 증폭시킨 후 BSA 에 대해 ELISA 를 수행하였다. BSA 에 비해 흡광도가 높은 클론들을 선택하여 DNA 시퀀싱을 의뢰하였다. 이로부터 중복된 각각의 단백질에 특이적인 펩타이드 시뭔스를 얻었다 (표 3).  Panning Stages of Each Library The phages recovered at the stage with the highest output / input ratio were obtained in plaque form. ELISA was performed on BSA after amplifying 60 phages from each plaque. Clones with higher absorbance than BSA were selected to request DNA sequencing. From this a peptide sequence specific to each overlapped protein was obtained (Table 3).
【표 3】Table 3
Figure imgf000035_0001
Figure imgf000035_0001
VEGF에 대한친화도의 측정 Measurement of affinity for VEGF
VEGF 에 대한 상기 펩타이드를 합성하여 SPR Biacore systemCBiacore AB, Uppsala, Sweden)을 이용하여 친화도를 측정하였다, VEGF 에 대한 친화도는 다음과 같다 (표 4). 【표 4】 The peptide for VEGF was synthesized and affinity was measured using SPR Biacore system (CBiacore AB, Uppsala, Sweden). The affinity for VEGF is as follows (Table 4). Table 4
Target BPB name ka [M'x s"1] ^[s_1] Kd [M] Target BPB name k a [M 'x s "1 ] ^ [s _1 ] K d [M]
VEGF121 BPB 1 VEGF 3.2 x 105 1.9 x ΚΓ2 60 x 10— 9 VEGF121 BPB 1 VEGF 3.2 x 10 5 1.9 x ΚΓ 2 60 x 10— 9
VEGF121 BPB2醫 1.2 x 105 1.1 x 10— 2 90 x 10_9 VEGF121 BPB2 醫 1.2 x 10 5 1.1 x 10— 2 90 x 10_ 9
VEGF121 BPB3VEGF 4.0 x 104 6.1 x ΚΓ3 154 x 10 VEGF121 BPB3VEGF 4.0 x 10 4 6.1 x ΚΓ 3 154 x 10
VEGFm BPB4VEGF 3.5 x 104 1.1 x 10"2 326 x 10 VEGF m BPB4 VEGF 3.5 x 10 4 1.1 x 10 "2 326 x 10
VEGF에 대한특이성 분석 Specificity Analysis for VEGF
도 8 에서 확인할 수 있듯이, VEGF 에 특이적인 BPB 각각은 VEGF 에 대하여 특이성을갖는다는 것을 알수 있다.  As can be seen in Figure 8, it can be seen that each BPB specific for VEGF has specificity for VEGF.
VEGF활성 억제실험 (HUVEC증식 분석) VEGF activity inhibition test (HUVEC growth assay)
HUVEC 세포에서 BPBVEGF가 VEGF 의 활성을 억제시킬 수 있는지 HUVEC 증식 분석을 시도 하였다. VEGF 는 상피세포의 성장을 촉진시키는 성장호르몬으로서 이를 막으면 상피세포의 성장을 억제할 수 있다. 도 9 에서 볼 수 있듯이, 20 μΜ, 10 μΜ 및 5 μΜ BPBVEGF을 처리했을 때, 20 μΜ에서 VEGF의 활성을 완전히 저해하였다. 그 중 BPB3VEGF가 IC50 활성이 5 μΜ로 가장 우수하였다. 이상으로 본 발명의 특정한 부분을 상세히 기술하였는 바, 당업계의 통상의 지식을 가진 자에게 있어서 이러한 구체적인 기술은 단지 바람직한 구현 예일 뿐이며, 이에 본 발명의 범위가 제한되는 것이 아닌 점은 명백하다. 따라서, 본 발명의 실질적인 범위는 첨부된 청구항과 등가물에 의하여 정의된다고 할 것이다. HUVEC proliferation assay was attempted to determine whether BPBVEGF can inhibit VEGF activity in HUVEC cells. VEGF is a growth hormone that promotes the growth of epithelial cells. Blocking it can inhibit the growth of epithelial cells. As can be seen in Figure 9, when treated with 20 μΜ, 10 μΜ and 5 μΜ BPBVEGF completely inhibited the activity of VEGF at 20 μΜ. Among them, BPB3VEGF had the best IC 50 activity of 5 μΜ. The specific parts of the present invention have been described in detail, and for those skilled in the art, these specific technologies are merely preferred embodiments, and the scope of the present invention is not limited thereto. It is obvious. Therefore, the substantial scope of the present invention will be defined by the appended claims and equivalents.

Claims

【청구의 범위】 [Range of request]
【청구항 1]  [Claim 1]
다음의 단계를 포함하는 사이토카인 (Cytokine) 타겟에 특이적으로 결합하는 Cytokine-바이포달 펩타이드 바인더 (Cytokine-BPB)의 제조방법 :  Method for preparing Cytokine-bipodal peptide binder (Cytokine-BPB) that specifically binds to a cytokine target comprising the following steps:
(a) (i) 가닥간 (interstrand) 비공유결합이 형성되는 패러럴 (parallel), 안티패러럴 (antiparallel) 또는 패러럴 (parallel)과 안티패러럴 (antiparallel) 아미노산 가닥들을 포함하는 구조 안정화 부위 (structure stabilizing region); (ii) 상기 구조 안정화 부위의 양 말단에 결합되어 있고 무작위적으로 선택된 각각 n 및 m 개의 아미노산을 포함하는 Cytokine-타겟 결합 부위 KCytokine-target binding region I) 및 Cytokine-타겟 결합 부위 Π (Cytokine-target binding region Π)를 포함하는 Cytokine-바이포달 펩타이드 바인더 (Cytokine-BPB)의 라이브러리를 제공하는 단계;  (a) (i) a structure stabilizing region comprising parallel, antiparallel or parallel and antiparallel amino acid strands on which interstrand noncovalent bonds are formed ; (ii) a Cytokine-target binding region KCytokine-target binding region I) and a Cytokine-target binding region Π (Cytokine-target binding site), each of which binds to both ends of the structural stabilization site and comprises randomly selected n and m amino acids, respectively. providing a library of Cytokine-bipodal peptide binders (Cytokine-BPB) comprising a binding region Π);
(b) 상기 라이브러리와 타겟으로서의 Cytokine 을 접촉시키는 단계; 그리고,  (b) contacting said library with Cytokine as a target; And,
(c) 상기 Cytokine 과 결합된 Cytokine-바이포달 펩타이드 바인더 (Cytokine-BPB)를 선택하는 단계. 【청구항 2】  (c) selecting a Cytokine-bipodal peptide binder (Cytokine-BPB) bound to the Cytokine. [Claim 2]
제 1 항에 있어서, 상기 구조 안정화 부위에 형성되는 가닥간 비공유결합은 수소결합, 정전기적 상호작용, 소수성상호작용, 반데르 발스 상호작용, 파이 -파이 상호작용, 양이온 -파이 상호작용 또는 이들의 조합인 것을 특징으로 하는 방법 .  The non-covalent bond between the strands formed at the structural stabilization site is hydrogen bond, electrostatic interaction, hydrophobic interaction, van der Waals interaction, pi-pi interaction, cation-pi interaction or their Method characterized in that the combination.
【청구항 3】 ' [Claim 3] "
제 1 항에 있어서, 상기 구조 안정화 부위의 아미노산 가닥들은 링커로 연결된 것을 특징으로 하는 방법. 【청구항 4】 제 1 항에 있어서, 상기 구조 안정화 부위는 β-헤어핀, 링커로 연결된 β-쉬트, 루이신 지퍼, 링커로 연결된 루이신 지퍼, 루이신 리치 모티프 또는 링커로 연결된 루이신 리치 모티프인 것을 특징으로 하는 방법, 【청구항 5】 The method of claim 1 wherein the amino acid strands of the structural stabilization site are linked by a linker. [Claim 4] The method of claim 1, wherein the structural stabilization site is characterized in that β-hairpin, β-sheet linked by a linker, leucine zipper, leucine zipper linked by a linker, leucine rich motif or leucine rich motif linked by a linker Method, [claim 5]
제 4 항에 있어서, 상기 구조 안정화 부위는 β-헤어핀인 것을 특징으로 하는 방법 .  The method of claim 4, wherein the structural stabilization site is β-hairpin.
【청구항 6】 [Claim 6]
제 5 항에 있어서, 상기 β_헤어핀은 서열목톡 제 1 서열 내지 제 19 서열로 구성된 군으로부터 선택되는 아미노산 서열을 포함하는 것을 특징으로 하는 방법 .  6. The method of claim 5, wherein the β_hairpin comprises an amino acid sequence selected from the group consisting of SEQ ID NO: 1 to 19 sequences.
【청구항 7】 [Claim 7]
제 6항에 있어서, 상기 β-헤어핀은 서열목록 제 2서열, 제 14서열 또는 제 18 서열로부터 선택되는 아미노산 서열을 포함하는 것을 특징으로 하는 방법 .  7. The method of claim 6, wherein the β-hairpin comprises an amino acid sequence selected from SEQ ID NO: 2, 14 or 18 sequence.
【청구항 8】 [Claim 8]
제 5 항에 있어서, 상기 -헤어핀은 다음 일반식 I 로 표시되는 것을 특징으로 하는 방법 :  The method of claim 5, wherein the -hairpin is represented by the following general formula I:
일반식 I  Formula I
X1-Trp(X2)X3-X4-X5(X,2)¾-X7 X 1 -Trp (X 2 ) X 3 -X4-X5 (X , 2) ¾-X7
¾은 Ser 또는 Gly-Glu이고, ¾ 및 X'2는 서로 독립적으로 Thr, His, Val, lie, Phe또는 Tyr 이며, ¾는 Trp또는 Tyr 이고, X4는 타입 I, 타입 Γ , 타입 Π, 타입 Π' 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, ¾는 Trp 또는 Phe이며 , ¾는 Trp또는 Val이고, X7는 Lys또는 Thr-Glu이다. ¾ is Ser or Gly-Glu, ¾ and X ' 2 are independently of each other Thr, His, Val, lie, Phe or Tyr, ¾ is Trp or Tyr, X4 is Type I, Type Γ, Type Π, Type Π ′ or type m or type ΠΓ turn sequence, ¾ is Trp or Phe, ¾ is Trp or Val, and X 7 is Lys or Thr-Glu.
【청구항 9】 [Claim 9]
제 5 항에 있어서, 상기 β_헤어핀은 다음 일반식 Π로 표시되는 것을 특징으로 하는 방법 : 일반식 Π The method of claim 5, wherein the β_hairpin is represented by the following general formula Π: Formula Π
X厂 Trp-X2-Tyr-¾-Phe-Thr-Va 1 -X 厂 Trp-X 2 -Tyr-¾-Phe-Thr-Va 1-
¾은 Arg, Gly-Glu또는 Lys-Lys이고, X2는 Gin또는 Thr이며 , ¾는 타입 I, 타입 1', 타입 Π, 타입 Π' 또는 타입 ΙΠ 또는 타입 ΠΓ 턴 서열이고, ¾는 Gin, Thr-Glu또는 Gln-Glu이다. ¾ is Arg, Gly-Glu or Lys-Lys, X 2 is Gin or Thr, ¾ is type I, type 1 ', type Π, type Π' or type ΙΠ or type ΠΓ turn sequence, ¾ is Gin, Thr-Glu or Gln-Glu.
【청구항 10】 [Claim 10]
제 5 항에 있어서, 상기 β-헤어핀은 다음 일반식 m으로 표시되는 것을 특징으로 하는 방법 :  The method of claim 5, wherein the β-hairpin is represented by the following general formula m:
일반식 m  General formula m
X1-X2-X3-Trp-X4-X5-Thr-X6-X7 X 1 -X 2 -X3-Trp-X4-X5-Thr-X 6 -X7
Xi은 Lys또는 Lys-Lys이고, X2는 Trp또는 Tyr이고, ¾는 Val 또는 Thr 이며, X4는 타입 I, 타입 Γ, 타입 Π, 타입 Π' 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, ¾는 Trp 또는 Ala 이며, ¾는 Trp 또는 Val 이고, X7은 Glu또는 Gln-Glu이다. Xi is Lys or Lys-Lys, X 2 is Trp or Tyr, ¾ is Val or Thr, X4 is type I, type Γ, type Π, type Π 'or type m or type ΠΓ turn sequence, ¾ is Trp or Ala, ¾ is Trp or Val, and X 7 is Glu or Gln-Glu.
I:청구항 11] I : Claim 11
제 5 항에 있어서, 상기 β-헤어핀은 다음 일반식 IV로 표시되는 것을 특징으로 하는 방법:  The method of claim 5, wherein the β-hairpin is represented by the following general formula IV:
일반식 IV  Formula IV
- X1-X2-X3-Trp-X4 -X 1 -X 2 -X3-Trp-X 4
¾은 Lys-Thr 또는 Gly이고, ¾는 Trp또는 Tyr 이고, ¾는 타입 I, 타입 1', 타입 Π, 타입 Π' 또는 타입 ΠΙ 또는 타입 ΠΓ 턴 서열이고, X4는 Thr— Glu또는 Gly이다.  ¾ is Lys-Thr or Gly, ¾ is Trp or Tyr, ¾ is type I, type 1 ', type Π, type Π' or type ΠΙ or type ΠΓ turn sequence, and X4 is Thr— Glu or Gly.
【청구항 12】 [Claim 12]
제 8 항에 있어서, 상기 β-헤어핀은 상기 일반식 I 에서 ¾은 Ser 또는 Gly-Glu 이고, ¾ 및 X'2는 서로 독립적으로 Thr, His 또는 Val 이며, ¾는 Trp 또는 Tyr 이고, X4는 타입 I, 타입 Γ, 타입 Π 또는 타입 Π' 서열이고, ¾는 Trp또는 Phe이며, ¾는 Trp또는 Val 이고, X7는 Lys또는 Thr-Glu이다. 【청구항 13】 According to claim 8, wherein the β-hairpin in the general formula I ¾ is Ser or Gly-Glu, ¾ and X'2 are independently of each other Thr, His or Val, ¾ is Trp or Tyr, X4 is Type I, type Γ, type Π or type Π 'sequence, ¾ is Trp or Phe, ¾ is Trp or Val, and X 7 is Lys or Thr-Glu. [Claim 13]
제 1 항에 있어서, 상기 Cytokine-타겟 결합 부위 I 의 아미노산 개수 n은 2-20인 것을 특징으로 하는 방법 . 【청구항 14】  The method of claim 1, wherein the amino acid number n of the Cytokine-target binding site I is 2-20. [Claim 14]
제 1 항에 있어서, 상기 Cytokine-타겟 결합 부위 Π의 아미노산 개수 m은 2-20인 것을 특징으로 하는 방법 .  The method of claim 1, wherein the amino acid number m of the Cytokine-target binding site Π is 2-20.
【청구항 15】 [Claim 15]
제 1 항에 있어서, 상기 라이브러리는 플라스미드, 박테리오파아지, 파아지미드로, 이스트 또는 박테리아로부터 제작된 것을 특징으로 하는 방법。 【청구항 16】  The method of claim 1, wherein the library is made of plasmid, bacteriophage, phagemid, yeast or bacteria.
제 1 항에 있어서, 상기 Cytokine-타겟 결합 부위 I 및 Cytokine- 타겟 결합 부위 Π는 Cytokine 에 공동으로 작용하여 결합하는 것을 특징으로 하는 방법 .  The method of claim 1, wherein the Cytokine-target binding site I and the Cytokine-target binding site Π cooperatively bind to Cytokine.
【청구항 17】 [Claim 17]
제 1 항에 있어서, 상기 구조 안정화 부위, Cytokine-타겟 결합 부위 According to claim 1, wherein the structural stabilization site, Cytokine-target binding site
I 또는 Cytokine-타겟 결합 부위 Π에 추가적으로 기능성 분자가 결합되어 있는 것을 특징으로 하는 방법 . A method characterized in that a functional molecule is additionally bound to I or a Cytokine-target binding site Π.
【청구항 18】 [Claim 18]
제 17 항에 있어서, 상기 기능성 분자는 검출가능한 신호를 발생시키는 레이블, 화학약물, 바이오약물, 세포막투과 펩타이드 (CPP) 또는 나노밉자인 것을 특징으로 하는 방법 .  18. The method of claim 17, wherein the functional molecule is a label, chemical, biopharmaceutical, cell transmembrane peptide (CPP) or nanomipza that generates a detectable signal.
【청구항 19] [Claim 19]
(a) 가닥간 (interstrand) 비공유결합이 형성된 패러럴 (parallel), 안티패러럴 (antiparallel) 또는 패러럴 (parallel)과 안티패러럴 (antiparallel) 아미노산 가닥들을 포함하는 구조 안정화 부위 (structure stabilizing region); 및 (a) parallel, antiparallel or parallel with interstrand noncovalent bonds; Structure stabilizing region comprising antiparallel amino acid strands; and
(b) 상기 구조 안정화 부위의 양 말단에 결합되어 있고 무작위적으로 선택된 각각 n 및 m 개의 아미노산을 포함하는 Cytokine-타겟 결합 부위 KCytokine-target binding region I) 및 Cytokine-타겟 결합 부위 II(Cytokine-target binding region Π )를 포함하는 Cytokine에 특이적으로 결합하는 Cytokine-바이포달 펩타이드 바인더 .  (b) Cytokine-target binding region KCytokine-target binding region I) and Cytokine-target binding region II (Cytokine-target binding site), each of which binds to both ends of the structural stabilization site and comprises randomly selected n and m amino acids, respectively. Cytokine-bipodal peptide binder that specifically binds to Cytokine including binding region Π).
【청구항 20】 [Claim 20]
제 19 항에 있어서, 상기 구조 안정화 부위에 형성된 가닥간 비공유결합은 수소결합, 정전기적 상호작용 소수성상호작용, 반데르 발스 상호작용, 파이 -파이 상호작용 양이온 -파이 상호작용 또는 이들의 조합인 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더. 【청구항 21】 The method of claim 19, wherein the non-covalent bond between the strands formed in the structure stabilizing region is a hydrogen bond, an electrostatic interaction hydrophobic interaction, van der Waals interactions, pi-in pi interaction or a combination thereof pi-interaction yae cation Cytokine-bipodal peptide binder, characterized in that. [Claim 21]
제 19 항에 있어서, 상기 구조 안정화 부위의 아미노산 가닥들은 링커로 연결된 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더.  20. The Cytokine-bipodal peptide binder according to claim 19, wherein the amino acid strands of the structural stabilization site are linked by a linker.
【청구항 22】 [Claim 22]
제 19 항에 있어서, 상기 구조 안정화 부위는 β-헤어핀, 링커로 연결된 β-쉬트, 루이신 지퍼 또는 링커로 연결된 루이신 지퍼, 루이신 리치 모티프인 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 .  20. The Cytokine-bipodal peptide binder according to claim 19, wherein the structural stabilization sites are β-hairpins, β-sheets linked by linkers, leucine zippers, or leucine zippers linked by linkers, and leucine rich motifs.
【청구항 23】 [Claim 23]
제 19 항에 있어서, 상기 구조 안정화 부위는 β-헤어핀인 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 .  20. The Cytokine-bipodal peptide binder according to claim 19, wherein the structural stabilization site is β-hairpin.
【청구항 24】 [Claim 24]
제 23 항에 있어서, 상기 β-헤어핀은 서열목록 제 1 서열 내지 제 19 서열로 구성된 군으로부터 선택되는 것을 특징으로 하는 Cytokine- 바이포달 펩타이드 바인더. 【청구항 25】 24. The Cytokine-bipodal peptide binder according to claim 23, wherein the β-hairpin is selected from the group consisting of SEQ ID NO: 1 to 19 sequences. [Claim 25]
제 24항에 있어서 , 상기 -헤어핀은 서열목록 제 2서열, 제 14서열 또는 제 18 서열로부터 선택되는 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 .  The Cytokine-bipodal peptide binder according to claim 24, wherein the -hairpin is selected from SEQ ID NO: 2, 14 or 18 sequence.
【청구항 26】 [Claim 26]
제 23 항에 있어서, 상기 β-헤어핀은 다음 일반식 I 로 표시되는 것을 특징으로 하는 Cytokine—바이포달 펩타이드 바인더 :  24. The Cytokine-bipodal peptide binder according to claim 23, wherein the β-hairpin is represented by the following general formula:
일반식 I  Formula I
Χι-ΤΓρ(Χ2)Χ3-Χ4-Χ5(Χ'2)Χ6-Χ7  Χι-ΤΓρ (Χ2) Χ3-Χ4-Χ5 (Χ'2) Χ6-Χ7
¾은 Ser 또는 Gly-Glu이고, X2 및 X'2는 서로 독립적으로 Thr, His, Val, lie, Phe또는 Tyr 이며, ¾는 Trp또는 Tyr 이고, X4는 타입 I, 타입. Γ , 타입 Π, 타입 Π' 또는 타입 m또는 타입 ΠΓ 턴 서열이고, ¾는 Trp 또는 Phe이며, ¾는 Trp또는 Val이고, X7는 Lys또는 Thr-Glu이다. ¾ is Ser or Gly-Glu, X 2 and X ' 2 are independently of each other Thr, His, Val, lie, Phe or Tyr, ¾ is Trp or Tyr and X4 is Type I, type. Γ, type Π, type Π 'or type m or type ΠΓ turn sequence, ¾ is Trp or Phe, ¾ is Trp or Val, and X 7 is Lys or Thr-Glu.
【청구항 27】 [Claim 27]
제 23 항에 있어서, 상기 β-헤어핀은 다음 일반식 Π로 표시되는 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 :  24. The Cytokine-bipodal peptide binder according to claim 23, wherein the β-hairpin is represented by the following general formula:
일반식 Π  Formula Π
Xi-Trp-X2-Tyr-¾-Phe-Thr-Va 1 -X4 Xi-Trp-X 2 -Tyr-¾-Phe-Thr-Va 1 -X4
¾은 Arg, Gly-Glu또는 Lys-Lys이고, X2는 Gin또는 Thr이며, ¾는 타입 I, 타입 I', 타입 Π, 타입 Π' 또는 타입 ΠΙ 또는 타입 ΠΓ 턴 서열이고, ¾는 Gin, Thr-Glu또는 Gln-Glu이다. 【청구항 28】 ¾ is Arg, Gly-Glu or Lys-Lys, X 2 is Gin or Thr, ¾ is type I, type I ', type Π, type Π' or type ΠΙ or type ΠΓ turn sequence, ¾ is Gin, Thr-Glu or Gln-Glu. [Claim 28]
제 23항에 있어서, 상기 β-헤어핀은 다음 일반식 m으로 표시되는 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더:  24. The Cytokine-bipodal peptide binder according to claim 23, wherein the β-hairpin is represented by the following general formula m:
일반식 m  General formula m
Xi-X2-¾-Trp-X4-X5-Thr-X6-X7 Xi-X2-¾-Trp-X4-X 5 -Thr-X 6 -X 7
¾은 Lys또는 Lys-Lys이고, ¾는 Trp또는 Tyr이고, ¾는 Val 또는 ¾ is Lys or Lys-Lys, ¾ is Trp or Tyr, ¾ is Val or
Thr 이며 , ¾는 타입 I, 타입 1', 타입 Π, 타입 Π' 또는 타입 m 또는 타입 ΠΓ 턴 서열이고, ¾는 Trp 또는 Ala 이며, ¾는 Trp 또는 Val 이고, X7은 Glu또는 Gln-Glu이다. Thr and ¾ is type I, type 1 ', type Π, type Π' or type m or Type ΠΓ turn sequence, ¾ is Trp or Ala, ¾ is Trp or Val, and X 7 is Glu or Gln-Glu.
【청구항 29】 [Claim 29]
제 23 항에 있어서, 상기 β-헤어핀은 다음 일반식 IV로 표시되는 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 :  24. The Cytokine-bipodal peptide binder according to claim 23, wherein the β-hairpin is represented by the following general formula IV:
일반식 IV  Formula IV
X Xa-Xs-Trp^  X Xa-Xs-Trp ^
¾은 Lys-Thr 또는 Gly이고, X2는 Trp또는 Tyr 이고, ¾는 타입 I, 타입 Γ, 타입 π, 타입 π' 또는 타입 m 또는 타입 nr 턴 서열이고,¾ is Lys-Thr or Gly, X 2 is Trp or Tyr, ¾ is type I, type Γ, type π, type π 'or type m or type nr turn sequence,
¾는 Thr-Glu또는 Gly이다. 【청구항 30】 ¾ is Thr-Glu or Gly. [Claim 30]
제 24 항에 있어서, 상기 β-헤어핀은 상기 일반식 I 에서 ¾은 Ser 또는 Gly-Ghi 이고, ¾ 및 X'2는 서로 독립적으로 Thr, His 또는 Val 이며, ¾는 Trp 또는 Tyr 이고, X4는 타입 I, 타입 Γ, 타입 Π 또는 타입 Π' 서열이고, ¾는 Trp또는 Phe이며, ¾는 Trp또는 Val 이고, X7는 Lys또는 Thr-Glu 인 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더. 【청구항 31】 The method according to claim 24, wherein the β-hairpin in Formula I ¾ is Ser or Gly-Ghi, ¾ and X'2 are independently of each other Thr, His or Val, ¾ is Trp or Tyr, X4 is A type I, type Γ, type Π or type Π 'sequence, ¾ is Trp or Phe, ¾ is Trp or Val, X 7 is Lys or Thr-Glu, Cytokine-bipodal peptide binder. [Claim 31]
제 19 항에 있어서, 상기 Cytokine-타겟 결합 부위 I 의 아미노산 개수 n은 2-20인 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 .  20. The Cytokine-bipodal peptide binder according to claim 19, wherein the amino acid number n of the Cytokine-target binding site I is 2-20.
【청구항 32】 [Claim 32]
제 19 항에 있어서, 상기 Cytokine-타겟 결합 부위 Π의 아미노산 개수 m은 2-20인 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 .  20. The Cytokine-bipodal peptide binder according to claim 19, wherein the amino acid number m of the Cytokine-target binding site Π is 2-20.
【청구항 33】 [Claim 33]
제 19 항에 있어서, 상기 Cytokine-타겟 결합 부위 I 및 Cytokine- 타겟 결합 부위 Π는 Cytokine 에 공동으로 작용하여 결합하는 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더. 【청구항 34】 20. The Cytokine-bipodal peptide binder according to claim 19, wherein the Cytokine-target binding site I and the Cytokine-target binding site Π cooperatively bind to Cytokine. [Claim 34]
제 19 항에 있어서, 상기 구조 안정화 부위, Cytokine-타겟 결합 부위 I 또는 Cytokine-타겟 결합 부위 Π에 추가적으로 기능성 분자가 결합되어 있는 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 .  20. The Cytokine-bipodal peptide binder according to claim 19, wherein a functional molecule is additionally bound to the structural stabilization site, Cytokine-target binding site I or Cytokine-target binding site I.
【청구항 35】 [Claim 35]
제 34 항에 있어서 , 상기 기능성 분자는 검출가능한 신호를 발생시 키는 레이블, 화학약물, 바이오약물, 세포막투과 펩타이드 (CPP) 또는 나노입자인 것을 특징으로 하는 Cytokine-바이포달 펩타이드 바인더 .  35. The Cytokine-bipodal peptide binder according to claim 34, wherein the functional molecule is a label, a chemical, a biopharmaceutical, a cell transmembrane peptide (CPP) or a nanoparticle that generates a detectable signal.
【청구항 36】 [Claim 36]
상기 제 19 항 내지 제 35 항 중 어느 한 항의 바이포달 펩타이드 바인더를 코딩하는 핵산 분자.  A nucleic acid molecule encoding the bipodal peptide binder of any one of claims 19 to 35.
【청구항 37】 [Claim 37]
상기 제 36 항의 핵산 분자를 포함하는 바이포달 펩타이드 바인더 와 발현용 백터 .  A bipodal peptide binder comprising the nucleic acid molecule of claim 36 and an expression vector.
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