WO2010101671A1 - Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy - Google Patents
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Definitions
- an object of the invention to provide a variety of characterization methods and systems for analysis of colloidal particles, such as spheres, in an automated, real-time manner using holographic video microscopy.
- FIG. IA shows an example of an in-line holographic video microscope
- FIG. IB is a magnified portion of Fig IA around the sample
- an interference pattern is shown in FIG. IC(I)
- FIG. 1C(2) shows a fit of FIG. IC(I) to predictions of Lorenz-Mie theory to obtain various measurements
- FIG. 2 shows processing speed and relative error in z p for fits, performed in
- the inset image shows a typical 201 x 201 pixel hologram and errors are computed relative to the double precision result obtained on a single-thread of the CPU (central processing unit), whose processing rate is indicated by the dashed line and the smooth curve is a guide to the eye;
- FIGS. 3A and 3B are, respectively, an original and transformed holographic images of three colloidal spheres; superimposed line segments in FIG. 3 A indicate the "votes" cast by three representative pixels and intensity in FIG. 3 B is scaled by the number of votes, with black representing 0 and white representing 800 votes and superimposed surface plots illustrate the middle sphere's transformation (Scale bar indicates 10 ⁇ m.);
- FIG. 4 show the root-mean-square error in the hologram estimated for a 1.5 ⁇ m diameter silica sphere in water as a function of the error in radius, Aa p , refractive index,
- FIG. 5A shows holographic particle image velocimetry measured through dimensional trajectories of 500 colloidal spheres traveling down a microfluidic channel in a pressure driven flow with each sphere representing the particle position in one field of a holographic snapshot and features from field sequences are linked into trajectories with gray scale showing a range of particle measured speeds;
- FIG. 5B shows a Poiseuille flow profile along the vertical direction attained from FIG. 5A data with particles excluded from the shaded region by interactions with upper and lower glass walls of the channel (the dashed curve is a fit to the anticipated parabolic flow profile);
- FIG. 5A shows holographic particle image velocimetry measured through dimensional trajectories of 500 colloidal spheres traveling down a microfluidic channel in a pressure driven flow with each sphere representing the particle position in one field of a holographic snapshot and features from field sequences are linked into trajectories with gray scale showing a range of particle measured speeds;
- FIG. 5B shows
- FIG. 6A(I) is a distribution of streaming particles as a function of index of refraction and observed sizes for a commercial polystyrene spherical particle continuing sample in water
- FIG. 6A(2) is a 2D cross section from FIG. 6A(I) for the particle size and FIG. 6A(3) for index of refraction, both being at the mean value of the other parameter
- FIGS. 6B(I) and 6B(2) show trajectory averaged radius and refractive index as a function of mean speed
- FIG. 7 A shows detection of avidin binding to biotinylated polystyrene spheres with light circles the probability distribution for measured particle radius in stock spheres with dark circles having a corresponding distribution for a sample of the sphere after incubation with neutravidin (dashed curves are guides for the eye);
- FIG. 7B is the equivalent distribution for particles' refractive indices with the arrow indicating redistribution of probabilities from a low density tail in a stock sample to the peak in the coated sample; and
- FIG. 8 shows a schematic block diagram of a computer system for implementing the methods of the invention.
- FIG. IA A holographic microscope 100 constructed for implementation of the invention is depicted schematically in Fig. IA.
- Light 130 scattered by the sample 110 interferes with the unscattered portion of the illuminating beam 120 to form an in-line hologram in the focal or imaging plane 125 of the microscope 100.
- the resulting heterodyne scattering pattern see FIG.
- IC(I)) is magnified by the microscope's objective lens 145 (Zeiss S Plan Apo 100* oil immersion, numerical aperture 1.4), and projected with a Ix video eyepiece onto a video camera 135 (or plural camera for some embodiments) (NEC TI-324AII), which records 1 ms exposures every 33 ms with a system magnification of 101 ⁇ m/pixel.
- this scattering, or interference pattern is fit to predictions of the Lorenz-Mie theory (see FIG. 1C(2)).
- the scattering function may be expanded in a series of vector spherical harmonics
- the normalized image of an individual sphere can be fit to Eq. (1) for the sphere's position r p , its radius a, and its refractive index n m .
- Each sphere's image can subtend tens of thousands of pixels, and the functions typically must be evaluated hundreds of times in the course of each nonlinear fit. Even with the best conventional computationally efficient formulations of the relevant special functions, a fully converged fit can take several seconds on a single processor.
- One most preferred form of the invention concerns methods to accelerate these fits using the Lorenz-Mie technique combined with particular programming steps. As will be shown hereinafter this methodology reveals solutions to problems and enables commercially effective characterizations, wherein those solutions were not even previously available.
- One of our reference systems consists of micrometer-scale latex spheres freely diffusing in water at room temperature, whose normalized hologram is shown in FIG. IC(I).
- IDL programming language ITT Visual Information Solutions, Boulder, CO
- GPUlib provides access to the underlying CUDA framework for mathematical computation on GPUs without requiring the sophisticated programming techniques typically required to implement mathematical computations on GPUs.
- two- dimensional fits run with full precision at nearly 3 frames/s, a factor of 20 faster than CPU- based analysis.
- Accepting 5 nm in-plane resolution and 50 nm axial resolution yields particle tracking and characterization data at more than 5 frames/s, as shown in Fig. 2.
- the GPU furthermore, supports multi-threaded operation. When supported by a multi-core CPU, this means that several analyses can proceed in parallel, yielding a proportional increase in total processing speed. This may be considered to be real-time performance in some applications.
- real time is that image data from each frame snapshot of image data is available for processing and use before the net frame snapshot arrives.
- this allows real time characterization of a particle of a sample, such as for example, of a sample's position, radius and index of refraction, and molecular level coatings like bead based molecular binding features. At least two of these parameters can be determined at a time and can even be all simultaneously. Substantial further acceleration could be attained by implementing the same fitting algorithm in an optimized compiled programming language.
- Each sphere appears in a snapshot, such as the example in FIG. 3A, as concentric bright and dark rings.
- the gradient of the intensity at each pixel therefore defines a line segment in the imaging plane along which a sphere's center may lie.
- the intersection of such lines defines an estimate for the particle's centroid in the focal plane.
- the particle is a sphere.
- FIG. 3A indicates the votes cast by three representative pixels in the original image.
- the single-pixel votes are accumulated in a transformed image, such as the example in FIG. 3B.
- the transformed image has the same resolution as the original, a choice that yields both reasonable accuracy and speed.
- Those pixels in the transformed image with the most votes are taken to be centroid candidates, and their locations used as the in-plane coordinates to initialize fits.
- the inset surface plots demonstrate how the extended interference pattern due to a single sphere is transformed into a sharply defined peak, even if two or more spheres' holographic images overlap. This methodology is more computationally efficient than the conventional circular Hough transform, which uses additional resources to record information about each potential circular region's radius.
- Refining the centroid estimate by computing the brightness- weighted center of brightness for each feature in the transformed image typically identifies particles' centroids to within a few tenths of a pixel, or a few tens of nanometers.
- Having estimated a particle, or sphere's, in-plane coordinates we then estimate its axial coordinate by back-propagating the measured light field using the Rayleigh- Sommerfeld propagator. Peaks in the reconstructed axial intensity correspond with particle positions to within 100 nm, even when particles occlude each other along the optical axis. This back-propagation can be performed with a one-dimensional slice of image data, centered on the particle's position, and therefore can be performed very rapidly.
- FIG. 5 A shows an example in the form of the superimposed trajectories of 500 individual one micrometer-diameter polystyrene spheres (Duke Scientific, catalog number 5100A) travelling down a 2 cm long microfluidic channel of 100 ⁇ m width and 17 ⁇ m depth.
- the spheres were dispersed in water at a volume fraction of 10- 5 , and were advected by a pressure-driven flow of water created by raising a reservoir against gravity. Images were obtained in a 50x70 ⁇ m 2 area near the middle of the channel, with the focal plane set roughly 5 ⁇ m below the lower glass/water interface.
- Spheres' locations in each snapshot are linked with a maximum-likelihood formalism approach into single-particle trajectories, r p (t), sampled at 1/60 s intervals. Not every time step is represented in each particle's trace because faster-moving particles near the mid-plane of the flow occasionally obscure slower-moving particles near the walls.
- FIG. 5 A presents only those particle positions that were identified unambiguously. Even such incomplete time series can be used to estimate the particles' instantaneous velocities.
- the traces in FIG. 5 A are of a gray scale according to the trajectory-averaged speed.
- Each point in FIG. 5B represents one particle's speed as a function of its mean height, z , in the microfluidic channel.
- the superimposed results of 1000 such trajectories clearly show the parabolic flow profile expected for Poiseuille flow down a channel, the width of the cluster of data reflecting spatial variations across the long horizontal axis of the channel.
- the limits of the vertical axis indicate the positions of the channel's upper and lower walls, with heights being reported relative to the microscope's focal plane.
- the dashed horizontal lines represent the region of the flow into which particles cannot wander because of their hard- sphere interaction with the glass walls.
- the fit parabola shows the flow vanishing at the channel's boundaries.
- Each trajectory also yields trajectory-averaged measurements of the radius and refractive index for each particle individually. Combining multiple measurements on a single particle minimizes systematic errors due to inevitable position-dependent variations in the illumination.
- the results in FIG. 6A(1)-A(3) show the radii and refractive indexes of the spheres in a commercial sample of polystyrene microspheres dispersed in water.
- FIG. 6A(2) and A(3) show the 2D histograms taken from FIG. 6A(I).
- Single-particle characterization is a substantial benefit of holographic characterization compared with bulk light-scattering measurements, which are the usual basis for analyzing particle dispersions. Building up distributions such as the example in FIGS. 6A(1)-A(3) from single-particle measurements eliminates the need for population models, and thus affords more general insights into a sample's composition. For example, the anticorrelation between the particles' size and refractive index evident in FIGS. 6A(1)-A(3) would not be apparent in light scattering data. No such anticorrelation is apparent in holographic analyses of homogeneous fluid droplets. One interpretation of this observation is that the larger spheres in the emulsion polymerized sample are more porous, and consequently have lower refractive indexes.
- FIGS. 7(A) and 7(B) shows one such comparative example study of 2 ⁇ m diameter biotinylated polystyrene spheres before and after incubation with neutravidin.
- the biotinylated polystyrene spheres used in this study were obtained from Polysciences Inc (Warrington, PA) (catalog number 24172).
- Neutravidin was obtained from Invitrogen (Carlsbad, CA) (catalog number A2666).
- PBS phosphate buffer saline
- the stock sample of beads was obtained by adding 10 ⁇ L of the as-delivered dispersion to 990 ⁇ L of PBS.
- the coated sample was prepared by adding 10 ⁇ L of the as-delivered dispersion to 990 ⁇ L of neutravidin solution. Particles were incubated and shaken at room temperature for 1 hr before they were introduced into the microfluidic channels by capillary action. Flow was induced by introducing a slip of absorbent paper into one end of the channel and images recorded until results were obtained for 1,000 spheres from each sample. Each data set consisted of roughly 5,000 holographic measurements, which were obtained over the course of roughly 5 min.
- the method of the invention can be implemented to determine parameters and features of interest by use of the computer system shown in FIG. 8.
- the system of FIG. 8 includes a computer 200 (which can include a CPU and/or GPU in a most preferred embodiment as described herein in connection with Lorenz- Mie analysis) which can execute a computer readable medium, such as a computer software module with instructions which are embedded, for example, in a computer addressable storage medium 210.
- a computer readable medium such as a computer software module with instructions which are embedded, for example, in a computer addressable storage medium 210.
- the use of the GPU in the computer 200 thereby allows real time analysis and simultaneous evaluation of parameters such as molecular coatings and/or of a particle's position, radius and index of refraction.
- This storage medium 210 can be read/writeable which enables data to be written thereto.
- the computer 200 executes the computer software module instructions to analyze data produced by the previously described methods of the invention. Such data can be obtained from the storage medium 210 and input via device 220. Other conventional devices, such as an output device 230 (e.g., a display, printer and/or a storage medium) can enable viewing and further data analysis. Such analysis can yield information about the position and characteristics of particles in real time or delayed time.
- Certain embodiments described hereinbefore use holographic video microscopy in a single wavelength to detect molecular-scale coatings on micrometer-diameter dielectric colloidal spheres. This detection was accomplished by analyzing a population of spheres that had been exposed to the coating molecules and comparing the results with those obtained by analyzing a comparable population of spheres that had not been exposed. Holographic snapshots of individual spheres in each population were analyzed with the Lorenz-Mie theory of light scattering to obtain estimates for the sphere's radius and complex refractive index. Lorenz-Mie analysis yields each sphere's radius with nanometer resolution and its refractive index to within a part in a thousand. The systematic differences in the population distributions of these properties constitute the basis for detecting the molecules. Coated spheres appear systematically larger by an amount consistent with the thickness of the coating.
- the Lorenz-Mie analysis can employ two-color or multi-color holograms to provide comparable detection resolution using only a single sphere, rather than populations of spheres.
- the input beam 120 in FIG. IA provides an output of a multi-color hologram.
- This embodiment creates simultaneous holographic images in two or more wavelengths.
- These multi-color holograms can be recorded on separate video cameras 135 (see FIG. IA) using filters to separate the images. Alternatively, they can be recorded with a color camera 135, and the separate images obtained from the recorded color channels.
- the spheres used for these types of measurements should have comparable optical properties in the wavelengths used.
- the coating should have strongly differing properties in at least two of the wavelengths.
- the coating might be a pure dielectric in one wavelength and strongly absorbing in another.
- holograms obtained in multiple wavelengths should yield identical results for the particle's position and size.
- Coated spheres' holograms should differ significantly in the estimated size and in the qualitative features of the estimated refractive index obtained from each wavelength. Such differences would constitute a detection of the molecular-scale coating. Suitable choice of wavelength, sphere size and sphere composition should provide quantitative information on the thickness or completeness of the coating.
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- Investigating Or Analysing Materials By Optical Means (AREA)
- Length Measuring Devices By Optical Means (AREA)
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US13/254,403 US9316578B2 (en) | 2008-10-30 | 2010-01-14 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
CN201080009712XA CN102365543A (en) | 2009-01-16 | 2010-01-14 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
EP10749072.4A EP2387708B1 (en) | 2009-01-16 | 2010-01-14 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
JP2011546331A JP5269207B2 (en) | 2009-01-16 | 2010-01-14 | Automatic real-time particle characterization and three-dimensional velocity measurement with holographic video microscopy |
US15/090,519 US9719911B2 (en) | 2009-01-16 | 2016-04-04 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
US15/665,126 US10634604B2 (en) | 2009-01-16 | 2017-07-31 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
US16/858,399 US11892390B2 (en) | 2009-01-16 | 2020-04-24 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
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US13/254,403 A-371-Of-International US9316578B2 (en) | 2008-10-30 | 2010-01-14 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
US15/090,519 Division US9719911B2 (en) | 2009-01-16 | 2016-04-04 | Automated real-time particle characterization and three-dimensional velocimetry with holographic video microscopy |
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EP (1) | EP2387708B1 (en) |
JP (1) | JP5269207B2 (en) |
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US9316578B2 (en) | 2016-04-19 |
US20120135535A1 (en) | 2012-05-31 |
US20200319086A1 (en) | 2020-10-08 |
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JP5269207B2 (en) | 2013-08-21 |
CN102365543A (en) | 2012-02-29 |
US11892390B2 (en) | 2024-02-06 |
EP2387708B1 (en) | 2019-05-01 |
US10634604B2 (en) | 2020-04-28 |
EP2387708A4 (en) | 2018-03-21 |
US20160216195A1 (en) | 2016-07-28 |
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US9719911B2 (en) | 2017-08-01 |
US20180011001A1 (en) | 2018-01-11 |
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