WO2008000020A1 - Improved process - Google Patents

Improved process Download PDF

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Publication number
WO2008000020A1
WO2008000020A1 PCT/AU2007/000879 AU2007000879W WO2008000020A1 WO 2008000020 A1 WO2008000020 A1 WO 2008000020A1 AU 2007000879 W AU2007000879 W AU 2007000879W WO 2008000020 A1 WO2008000020 A1 WO 2008000020A1
Authority
WO
WIPO (PCT)
Prior art keywords
keratin
keratin sample
abnormal component
data
detecting
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/AU2007/000879
Other languages
English (en)
French (fr)
Inventor
Gary L. Corino
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Fermiscan Australia Pty Ltd
Original Assignee
Fermiscan Australia Pty Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from AU2006903508A external-priority patent/AU2006903508A0/en
Priority to US12/306,134 priority Critical patent/US20090325303A1/en
Priority to AT07719118T priority patent/ATE520345T1/de
Priority to EP07719118A priority patent/EP2032031B1/en
Priority to ES07719118T priority patent/ES2371368T3/es
Priority to CNA2007800243800A priority patent/CN101478916A/zh
Application filed by Fermiscan Australia Pty Ltd filed Critical Fermiscan Australia Pty Ltd
Priority to AU2007264394A priority patent/AU2007264394B2/en
Priority to JP2009516820A priority patent/JP2009541747A/ja
Priority to BRPI0713885-7A priority patent/BRPI0713885A2/pt
Priority to KR1020097001887A priority patent/KR101087576B1/ko
Priority to CA002652955A priority patent/CA2652955A1/en
Publication of WO2008000020A1 publication Critical patent/WO2008000020A1/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61B—DIAGNOSIS; SURGERY; IDENTIFICATION
    • A61B5/00—Measuring for diagnostic purposes; Identification of persons
    • A61B5/07—Endoradiosondes
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N23/00—Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups G01N3/00 – G01N17/00, G01N21/00 or G01N22/00
    • G01N23/20—Investigating or analysing materials by the use of wave or particle radiation, e.g. X-rays or neutrons, not covered by groups G01N3/00 – G01N17/00, G01N21/00 or G01N22/00 by using diffraction of the radiation by the materials, e.g. for investigating crystal structure; by using scattering of the radiation by the materials, e.g. for investigating non-crystalline materials; by using reflection of the radiation by the materials
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46—Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47—Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701—Details
    • G01N2333/4742—Keratin; Cytokeratin

Definitions

  • a method for detecting a presence of an abnormal component in a keratin sample taken from a subject suffering from a pathological -state comprising the steps of exposing the keratin sample to a swelling substance so as to penetrate the keratin sample thereby producing a derived chemical substance; obtaining data from the derived chemical substance; comparing the data obtained from the derived chemical substance with a second group of data contained in a reference database so as to identify the presence of the abnormal component in the keratin sample; whereby detection of the abnormal component is consistent with a presence of the pathological state in the subject.
  • X-ray diffraction analysis has shown that subjects with a plurality of certain types of cancers (colon, breast and prostate) and other pathological states (Alzheimer's disease) produce hair samples that have abnormalities in them.
  • the abnormalities are detectable using X-ray diffraction techniques and are consistent with the presence of the pathological state itself.
  • X-ray diffraction techniques can identify the presence of an abnormality in hair or other keratin samples, X-ray diffraction techniques are limited in that they do not reveal the nature of the abnormal component (i.e. whether the abnormality represents an inclusion of a chemical substance not normally present or rather a defect in the structure of a keratin fibril for example in the hair) .
  • a structural abnormality therefore can have the same proportion of chemical molecules present but differ structurally in geometric orientation of the molecules or their chemical bonding. Therefore, the pathological state can lead to structural changes in chemical bonding in the hair even though the chemical molecules forming the hair are in the same proportion as occurs in normal hair.
  • the pathological state can be identified with greater specificity and sensitivity. Identification of the abnormal component means that additional information is then provided about the nature of the pathological state.
  • a problem sought to be solved by the present invention is the ability to chemically penetrate a hair sample so as to detect an abnormal component within the hair sample taken from a subject with a pathological state.
  • a method for detecting a presence of an abnormal component in a keratin sample taken from a subject suffering from a pathological state comprising the steps of:
  • the swelling substance includes formic acid.
  • the second group of data is correlated with the presence of the pathological state in the subject.
  • the second group of data is causatively associated with the presence of the pathological state in the subject.
  • the swelling substance is selected from a plurality of different swelling substances .
  • the keratin sample is selected from a plurality of different keratin samples .
  • the second group of data is selected from a plurality of different groups of data.
  • the derived data and the second group of data are analyzed using a plurality of different methods of comparison .
  • the keratin sample can be obtained and analyzed in association with at least one of a pharmacy, a test kit, the subject's home, a health care clinic and a testing laboratory or any convenient location (office, field or barn) .
  • the subject is selected from the group consisting of a human, and an animal.
  • Figure 1 shows the application of a swelling substance to a keratin sample for use in diagnostic testing.
  • Figure 2 shows a plurality of different chemical substances being applied in the alternative to a keratin sample.
  • Figure 3 shows a plurality of different keratin samples taken from different subjects with different pathological states (or the same subject with several pathological states) or from a plurality of different mammalian species.
  • Figure 4 shows a plurality of different methods of analysis being used to analyze data produced according to the first embodiment disclosed in Figure 1.
  • Figure 5 shows the method of analyzing a keratin sample being implemented in use, wherein a sample can be collected from a subject at a health care clinic, a collecting room or using a kit at a convenient location to rhe subject (home, field, barn, etc) .
  • Figure 6 illustrates results of SAXS analysis applied to samples treated in accordance with embodiments of the method of the present invention.
  • An “animal” is defined as a living organism characterized by the capacity for voluntary motion, sensation and the ingestion of food such as plants and other animals, and which has a non-cellulose cell wall.
  • the plurality of different selections and forms pertaining to the invention as claimed include ⁇ .he selections and forms as appearing in the body of the specification.
  • “Mammalian species” includes the types of species as appearing in the body of the specification. It can include a human, a pet such as a dog or cat or a variety of other animals with hair.
  • a "keratin sample” or “keratin substance” is a sample that is substantially comprised of keratin.
  • the keratin substance 16 can include human scalp or body hair and in particular pubic hair, pet hair, animal hair or hair from a member of a mammalian species in general, or other keratin based materials such as nail clippings or an eyelash.
  • a "subject” can include a mammalian species.
  • a mammalian species can include a human, a pet such as a dog or cat or a variety of other animals.
  • Figure 1 illustrates a method of analyzing a keratin sample 16.
  • Figure 1 shows a first container 12 which holds a swelling substance 14.
  • a keratin sample 16 is taken from subject 11, wherein the subject 11 can include a mammalian species.
  • a mammalian species can include a human, a pet such as a dog or cat or a variety of other animals.
  • the keratin substance 16 can include human scalp or body hair and in particular pubic hair, pet hair, animal hair or hair from a mammalian species in general, or other keratin based materials such as nail clippings or an eyelash.
  • the keratin sample 16 is exposed to the swelling substance 14.
  • a derived chemical substance 18 is obtained from application of the swelling substance 14 to the keratin sample 16 whereby the swelling substance 14 penetrates the keratin sample 16.
  • the derived chemical substance 18 is collected in the second container 19 (alternatively and without loss of generality only one container need be used) .
  • the derived chemical substance 18 located in the second container 19 is then taken to a laboratory 20 at the place of application of the swelling substance 14.
  • the laboratory 20 will then use a plurality of diagnostic tests to obtain data 22 which can be compared with data 24 located in a reference database 25 so as to determine if the subject 11 has a pathological state.
  • the reference database 25 can be obtained from a plurality of control samples taken from normal subjects and subjects with a plurality of different pathological states.
  • the data 22 can be compared with dara 24 in the reference database 25 to determine whether or not the subject 11 has a pathological state, for example if the reference database 25 indicates that the result in question is both correlated and causatively linked to a pathological state then a meaningful comparison can be considered. Additionally zero correlation or no information being provided in rhe case of no association with an abnormal component being present 1 in the derived chemical substance 18 can in certain instances be consistent with an abnormality being a defect in protein folding, that is a structural defect in the keratin sample 16 as opposed to an additional inclusion of a component that may or may not be ordinarily found in the keratin sample 16 such as a metal or other compound (whereby no inclusion is washed out into the derived chemical substance 18) .
  • Figure 2 shows an embodiment of the present invention in which the sensitivity or specificity of the method described in Figure 1 is improved by way of changing the swelling substance 14.
  • Figure 2 shows a plurality of different swelling substances 14, being Sl, S2...SN.
  • the data 22, not shown, is analyzed by comparing the data 22 with the data 24 (from a reference database 25 as seen in Figure 1) so as to select a swelling substance from the set Sl... SN, which is adapted to remove the defect in the keratin sample 16 by either altering the structural nature of the keratin sample 16 so as to restore normal folding and configuration of the keratin sample 16 or by transferring, by way of application of the swelling substance 14 to the keratin sample 16, the component causing the abnormality in the keratin sample 16 to the derived chemical substance 18 (this can involve for example formic acid penetrating and washing out an inclusion from a hair sample) .
  • Dithio-Threitol or DTE (Dithioerythritol) and urea or other protein denaturing agents.
  • DTE Dithioerythritol
  • urea or other protein denaturing agents urea or other protein denaturing agents.
  • formic acid other considerations are relevant such as toxicity and in the case of reducing agents the fact that the structure of the keratin sample 16 can be substantially destroyed by the application of the reducing agent.
  • a swelling substance 14 which may not destroy the structure of a keratin sample 16 after application.
  • Figure 3 shows the use of a specific swelling substance 14, for a given mode of operation in -association with a plurality of different keratin samples 16 to yield a derived chemical substance 18.
  • the plurality of different keratin samples 16 can be taken from a plurality of different mammalian species. Alternatively or additionally, the plurality of different keratin samples 16 can be taken from subjects 11 who are suspected to have a plurality of different pathological states .
  • the variations in swelling substances as disclosed in Figure 2 and the variations in keratin samples 16 as disclosed in Figure 3 can be used to identify a particular capability in a particular swelling substance 14 or a particular susceptibility in a given keratin sample 16. For example if a given swelling substance 14 such as formic acid was known to remove an abnormal component from a keratin sample 16 during a particular concentration range and a particular sub-range of the concentration was shown to yield a significantly improved result then a new availability in the formic acid could exist.
  • a given swelling substance 14 such as formic acid was known to remove an abnormal component from a keratin sample 16 during a particular concentration range and a particular sub-range of the concentration was shown to yield a significantly improved result then a new availability in the formic acid could exist.
  • a particular susceptibility will occur if a keratin sample 16 is known to yield a conclusive result in association with a given mode of operation and a given swelling substance 14 that leads to an improvement in specificity or sensitivity of a diagnostic test to look for the presence of the abnormal component.
  • Figure 3 can include a keratin sample 16 taken from a subject 11 who is suspected of having a pathological state which can include one or more cancers or pathological states such as lung cancer, Creutzfeldt-Jacob disease, mad cow disease, infection (bacterial, viral, or a Prion or more generally by other agents), a metabolic disorder (which can include diabetes) , or alternatively hepatitis, heart disease or liver dysfunction.
  • a pathological state which can include one or more cancers or pathological states such as lung cancer, Creutzfeldt-Jacob disease, mad cow disease, infection (bacterial, viral, or a Prion or more generally by other agents), a metabolic disorder (which can include diabetes) , or alternatively hepatitis, heart disease or liver dysfunction.
  • the keratin sample 16 can include Keratin Type I and Keratin Type II.
  • Figure 4 shows an embodiment of the method for detecting the presence of a pathological state in which a given swelling substance 14 and a given keratin sample 16 are used in association with a plurality of different types of methods of comparison between the data 22 and a second group of data 24 contained in the reference database 25 so as to produce an improvement in specificity or sensitivity of the method of analyzing the keratin sample 16.
  • An advantage of the present embodiment is that if the abnormal component is present in the derived chemical substance 18 then the derived chemical substance 18 can be further analyzed for the purpose of identifying the nature of the abnormal component so as to provide a health care practitioner with more information about the pathological state. If the abnormal component is a trace metal then atomic absorption spectroscopy or ICP-mass spectrometry could be applied to the derived chemical substance 18 to confirm the nature of the abnormal component.
  • the abnormal component in the derived chemical substance 18 is a protein, a carbohydrate, a fatty acid or more generally of organic origin and an antibody can be raised against the abnormal component then a plurality of different techniques such as Western blot analysis, ELISA or cell agglutination assays can be used in an attempt to characterize the abnormal component. In certain instances, immuno-electron microscopy can be used in an attempt to identify the abnormal component in the keratin sample 16 without the need for the use of the derived chemical substance 18 to subsequently be obtained. If the abnormal component is associated with genetic material (being hereditary in narure or acquired by way of a viral vector) then an amplification technique could be applied to determine the sequence and conformation of the abnormal component . In use
  • Figure 5 shows an embodiment of the present invention in use.
  • a keratin sample 16 can be collected from a subject at a pharmacy 26 .
  • the keratin sample 16 can then be sent to a testing laboratory 34 so as to perform the method for detecting the presence of an abnormal component in the keratin sample 16 as seen in Figure 1.
  • test kit 28 can be obtained so as to use the test kit 28 embodying the method of detection at the subject's home 30, in association with consultation of the subject's health care practitioner located at a health care clinic 32.
  • the subject 11 can visit his or her health care clinic 32 so as to provide the keratin sample 16.
  • the health care clinic 32 can perform the method of analyzing the keratin sample 16 themselves or in a further, preferred embodiment. ⁇ .he health care clinic 32 can obtain the keratin sample 16 from the subject 11 so as to forward the keratin sample 16 to the testing laboratory 34.
  • This methodology was applied to several hair fibers from individuals of known pathology to determine if the ring observed by Synchrotron Small Angle X-Ray Scatter (SAXS) of hair, specific for the presence of breast cancer, could be removed by such treatment.
  • Hair fibers from subjects with breast cancer were immersed in an 85% (v/v) solution of formic acid or in glacial acetic acid for 3 minutes at room temperature. The acid was then decanted and replaced with several changes of Milli-Q water. The fibers were allowed to dry then mounted into a sample holder for exposure to an X-ray source. SAXS image data was collected for these hairs .
  • Hair fibers that were taken from the same individual and subsequently treated with formic and acetic acid showed either significant reduction or complete removal of the ring in the zone of interest in the SAXS image.
  • Figure 6A is a SAXS image of a hair from an individual with breast cancer.
  • Figures 6B and 6C are SAXS images of hair fibers from the same individual post treatment with acetic acid and formic acid respectively. It can be seen from these images that the ring in the zone of interest is significantly diminished after treatment with either acid and hence such treatments may be used as a tool to investigate the underlying change in the fiber associated with the presence of breast cancer.

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  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Immunology (AREA)
  • General Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Analytical Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Molecular Biology (AREA)
  • Biomedical Technology (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Urology & Nephrology (AREA)
  • Hematology (AREA)
  • Cell Biology (AREA)
  • Microbiology (AREA)
  • Biotechnology (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • Biophysics (AREA)
  • Heart & Thoracic Surgery (AREA)
  • Medical Informatics (AREA)
  • Surgery (AREA)
  • Animal Behavior & Ethology (AREA)
  • Public Health (AREA)
  • Veterinary Medicine (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Sampling And Sample Adjustment (AREA)
  • Analysing Materials By The Use Of Radiation (AREA)
PCT/AU2007/000879 2006-06-29 2007-06-27 Improved process Ceased WO2008000020A1 (en)

Priority Applications (10)

Application Number Priority Date Filing Date Title
CA002652955A CA2652955A1 (en) 2006-06-29 2007-06-27 Improved process
JP2009516820A JP2009541747A (ja) 2006-06-29 2007-06-27 改善された方法
EP07719118A EP2032031B1 (en) 2006-06-29 2007-06-27 Detection of an abnormal change in the component of a hair sample in subjects suffering from breast cancer
ES07719118T ES2371368T3 (es) 2006-06-29 2007-06-27 Detección de un cambio anormal en el componente de una muestra de pelo en sujetos que padecen cáncer de mama.
CNA2007800243800A CN101478916A (zh) 2006-06-29 2007-06-27 改进处理
US12/306,134 US20090325303A1 (en) 2006-06-29 2007-06-27 Process
AU2007264394A AU2007264394B2 (en) 2006-06-29 2007-06-27 Improved process
AT07719118T ATE520345T1 (de) 2006-06-29 2007-06-27 Nachweis einer anormalen veränderung in der komponente einer haarprobe von patienten mit brustkrebs
BRPI0713885-7A BRPI0713885A2 (pt) 2006-06-29 2007-06-27 processo melhorado
KR1020097001887A KR101087576B1 (ko) 2006-06-29 2007-06-27 개선 공정

Applications Claiming Priority (6)

Application Number Priority Date Filing Date Title
AU2006903508 2006-06-29
AU2006903508A AU2006903508A0 (en) 2006-06-29 Improved Process
AU2007900272A AU2007900272A0 (en) 2007-01-19 Improved Process
AU2007900272 2007-01-19
AU2007900308A AU2007900308A0 (en) 2007-01-22 Improved Process
AU2007900308 2007-01-22

Publications (1)

Publication Number Publication Date
WO2008000020A1 true WO2008000020A1 (en) 2008-01-03

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Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/AU2007/000879 Ceased WO2008000020A1 (en) 2006-06-29 2007-06-27 Improved process

Country Status (13)

Country Link
US (1) US20090325303A1 (https=)
EP (1) EP2032031B1 (https=)
JP (1) JP2009541747A (https=)
KR (1) KR101087576B1 (https=)
CN (1) CN101478916A (https=)
AR (1) AR061732A1 (https=)
AT (1) ATE520345T1 (https=)
AU (1) AU2007264394B2 (https=)
BR (1) BRPI0713885A2 (https=)
CA (1) CA2652955A1 (https=)
ES (1) ES2371368T3 (https=)
TW (1) TW200801513A (https=)
WO (1) WO2008000020A1 (https=)

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