WO2006050959A2 - Molecules which promote hematopoiesis - Google Patents

Molecules which promote hematopoiesis Download PDF

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Publication number
WO2006050959A2
WO2006050959A2 PCT/EP2005/012075 EP2005012075W WO2006050959A2 WO 2006050959 A2 WO2006050959 A2 WO 2006050959A2 EP 2005012075 W EP2005012075 W EP 2005012075W WO 2006050959 A2 WO2006050959 A2 WO 2006050959A2
Authority
WO
WIPO (PCT)
Prior art keywords
peptide
amino acid
groups
peptides
unit
Prior art date
Application number
PCT/EP2005/012075
Other languages
English (en)
French (fr)
Other versions
WO2006050959A3 (en
Inventor
Hans-Georg Frank
Franz-Peter Bracht
Udo Haberl
Andreas Rybka
Original Assignee
Aplagen Gmbh
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US11/041,207 external-priority patent/US7589063B2/en
Priority to US11/667,290 priority Critical patent/US20090118195A1/en
Priority to MX2007005640A priority patent/MX2007005640A/es
Priority to AU2005303887A priority patent/AU2005303887A1/en
Priority to EA200701031A priority patent/EA200701031A1/ru
Priority to EP05819212A priority patent/EP1812461A2/en
Priority to JP2007540582A priority patent/JP2008519589A/ja
Priority to CA002586915A priority patent/CA2586915A1/en
Priority to BRPI0518025-2A priority patent/BRPI0518025A/pt
Application filed by Aplagen Gmbh filed Critical Aplagen Gmbh
Publication of WO2006050959A2 publication Critical patent/WO2006050959A2/en
Priority to US11/917,991 priority patent/US20100145006A1/en
Priority to CA002648732A priority patent/CA2648732A1/en
Priority to EP06754540A priority patent/EP1907417A2/en
Priority to JP2008517435A priority patent/JP2008546732A/ja
Priority to BRPI0611745-7A priority patent/BRPI0611745A2/pt
Priority to PCT/EP2006/006097 priority patent/WO2006136450A2/en
Priority to EA200800109A priority patent/EA200800109A1/ru
Publication of WO2006050959A3 publication Critical patent/WO2006050959A3/en
Priority to IL182843A priority patent/IL182843A0/en
Priority to NO20072856A priority patent/NO20072856L/no
Priority to IL188153A priority patent/IL188153A0/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K7/00Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/04Linear peptides containing only normal peptide links
    • C07K7/06Linear peptides containing only normal peptide links having 5 to 11 amino acids
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K7/00Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/04Linear peptides containing only normal peptide links
    • C07K7/08Linear peptides containing only normal peptide links having 12 to 20 amino acids
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P7/00Drugs for disorders of the blood or the extracellular fluid
    • A61P7/06Antianaemics
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides

Definitions

  • X 10 is a non-conservative exchange of proline; or Xg and X 10 are substituted by a single amino acid;
  • X 14 Js D, E, I, L or V; Xi 5 is C, A, K, ⁇ -amino- ⁇ -bromobutyric acid or homocysteine (hoc) provided that either X 6 or X 15 is C or hoc.
  • X 6 is C
  • N terminal and end (C terminal) of the described individual peptide sequences up to five amino acids may be removed and/or added. It is self-evident that size is not of relevance as long as the peptide function is preserved. Furthermore, please note that individual peptide sequences that might be too short to enfold their activity as monomers usually function as agonists upon dimerisation. Such peptides are thus preferably used in their dimeric form.
  • peptides selected from the group consisting of SEQ ID NOS 2, 4-9 given below. Especially preferred is a peptide with a K in position 10 and a K in position 17 as is the case in SEQ ID NO 2.
  • peptide dimers or multimers are formed on the basis of the monomers according to SEQ ID NO 2 and 4 to 9 as given above or modifications thereof.
  • the peptides described herein can e.g. also be modified by a conservative exchange of single amino acids, wherein preferably, not more than 1, 2 or 3 amino acids are exchanged.
  • This embodiment of the invention allows the custom-made design of a suitable linker by molecular modeling in order to avoid distortions of the bioactive conformation.
  • a linker composed of 3 to 5 amino acids is especially preferred.
  • the linker between the functional domains (or monomeric units) of the final bivalent or multivalent peptides can be either a distinct part of the peptide or can be composed - fully or in parts - of amino acids which are part of the monomeric functional domains.
  • the glycine residues in amino acid positions 1 and 2 and 19 and 20 can form part of the linker. Examples are given with Seq. 11 to 14.
  • linker is thus rather defined functionally than structurally, since an amino acid might form part of the linker unit as well as of the monomeric subunits.
  • This sequence presents a continuous bivalent peptide according to the invention harboring two slightly different (heterogeneous) binding domains. Such bivalent peptides would not be accessible economically with a prior art dimerization approach (see above). Also these binding domains can be applied as a monomer as
  • a further example is
  • the peptide optionally carries an additional amino acid, preferably one with a reactive side chain such as cysteine at the N-terminus such as e.g. in the following sequences C-GGTYSCHFGKLTWVCKKQGG-GGTYSCHFGKLTWVCKKQGG
  • the first sequence depicts a serine in position X 7 . It was found that a new hydrogen bridge is created through the introduction of the hydroxyl group when this sequence is incorporated in a dimer. The use of a serine in position X 7 is thus especially favourable for dimers since the bioactive conformation is stabilised.
  • This can include:
  • the dimeric molecules known in the state of the art provide merely one target respectively receptor binding unit per dimer. Thus only one receptor complex is generated upon binding of the dimeric compound thereby inducing only one signal transduction process.
  • two monomeric EPO mimetic peptides are connected via PEG to form a peptide dimer thereby facilitating dimerisation of the receptor monomers necessary for signal transduction (Johnson et. al., 1997).
  • the supravalent compounds according to the invention comprise several already di- or multimeric respective receptor binding units.
  • an appropriate carrier unit is a homobifunctional polymer, of for example polyethylene glycol (bis-maleimide, bis-carboxy, bis-amino etc.).
  • the attachment can occur e.g. via a reactive amino acid of the peptide units e.g. lysine, cysteine, histidine, arginine, aspartic acid, glutamic acid, serine, threonine, tyrosine or the N- terminal amino group and the C-terminal carboxylic acid.
  • a reactive amino acid of the peptide units e.g. lysine, cysteine, histidine, arginine, aspartic acid, glutamic acid, serine, threonine, tyrosine or the N- terminal amino group and the C-terminal carboxylic acid.
  • Acylating groups which react with the amino groups of the protein, for example acid anhydride groups, N-acylimidazoIe groups, azide groups, N-carboxy anhydride groups, diketene groups, dialkyl pyrocarbonate groups, imidoester groups, and carbodiimide-activated carboxyl-groups. All of the above groups are known to react with amino groups on proteins/peptides to form covalent bonds, involving acyl or similar linkages;
  • ester and amide forming groups which react with a carboxyl group of the protein, such as diazocarboxylate groups, and carbodiimide and amine groups together;
  • the compound according to the invention may be made by - optionally - first modifying the polymer chemically to produce a polymer having at least one chemical group thereon which is capable of reacting with an available or introduced chemical group on the peptide unit, and then reacting together the - optionally - modified polymer and the peptide unit to form a covalently bonded complex thereof utilising the chemical group of the - if necessary - modified polymer.
  • the coupling of the peptide units to the polymeric carrier unit is performed using reactions principally known to the person skilled in the art. E.g. there are number of PEG and HES attachment methods available to those skilled in the art (see for example WO 2004/100997 giving further references, Roberts et al., 2002; US 4,064,118; EP 1 398 322; EP 1 398 327; EP 1 398 328; WO 2004/024761 ; all herein incorporated by reference).
  • one embodiment of the present invention teaches the use of a polymeric carrier unit that is composed of at least two subunits.
  • the polymeric subunits are connected via biodegradable covalent linker structures.
  • the molecular weight of the large carrier molecule for example 40 kD
  • several small or intermediate sized subunits for example each subunit having a molecular weight of 5 to 1OkD
  • the molecular weights of the modular subunits add up thereby generating the desired molecular weight of the carrier molecule.
  • the biodegradable linker structures can be broken up in the body thereby releasing the smaller carrier subunits (e.g. 5 to 1OkD).
  • the small carrier subunits show a better renal clearance than a polymer molecule having the overall molecular weight (e.g. 4OkD).
  • An example is given in Fig. 16.
  • the linker structures are selected according to known degradation properties and time scales of degradation in body fluids.
  • the breakable structures can, for instance, contain cleavable groups like carboxylic acid derivatives as amide/peptide bonds or esters which can be cleaved by hydrolysis (see e.g. Roberts, 2002 herein incorporated by reference).
  • PEG succinimidyl esters can also be synthesized with various ester linkages in the PEG backbone to control the degradation rate at physiological pH (Zhao, 1997, herein incorporated by reference).
  • Other breakable structures like disulfides of benzyl urethanes can be cleaved under mild reducing environments, such as in endosomal compartments of a cell (Zalipsky, 1999) and are thus also suitable.
  • This embodiment has the advantage that a supravalent composition is created due to the first carrier which is however, very durable due to the presence of the second carrier, which is constituted preferably by PEG units of 3 to 5 or 1OkD.
  • the whole entity is very well degradable, since the first carrier (e.g. HES) and the peptide units are biodegradable and the second carrier, e.g. PEG is small enough to be easily cleared from the body.
  • cleavage solution 50 ⁇ l of the cleavage solution was added to each well and the cleavage was performed for 10 min, this procedure was repeated three times.
  • the cleaved peptide was eluted with 200 ⁇ l cleavage solution by gravity flow into the deep well plate.
  • the deprotection of the side chain function was performed for another 2.5 h within the deep well plate.
  • the peptide was precipitated with ice cold ether/hexane and centrifuged.
  • the peptides were solved in neutral aqueous solution and the cyclization was incubated over night at 4° C.
  • the peptides were lyophilized.
  • the working-up was performed via ultra filtration and freeze-drying
  • TNBS 2,4,6-trinitrobenzole sulphonic acid
  • a cysteine containing peptide was used which had either a free (Pep-IA) or a biotinytated (Pep-IB) N-term.
  • a 4:1 mixture of Pep-IA/B was converted over night in excess (approx. 6 equivalents with MaIPA-HES in phosphate-buffer, 50 mM, pH 6.5/DMF 80:20; working up occurred with ultra filtration and freeze-drying.

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  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Medicinal Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Animal Behavior & Ethology (AREA)
  • Veterinary Medicine (AREA)
  • Public Health (AREA)
  • Engineering & Computer Science (AREA)
  • Pharmacology & Pharmacy (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • General Chemical & Material Sciences (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Diabetes (AREA)
  • Hematology (AREA)
  • Cardiology (AREA)
  • Heart & Thoracic Surgery (AREA)
  • Immunology (AREA)
  • Epidemiology (AREA)
  • Peptides Or Proteins (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)
  • Medicinal Preparation (AREA)
PCT/EP2005/012075 2004-11-10 2005-11-10 Molecules which promote hematopoiesis WO2006050959A2 (en)

Priority Applications (18)

Application Number Priority Date Filing Date Title
US11/667,290 US20090118195A1 (en) 2004-11-10 2005-11-10 Molecules Which Promote Hematopoiesis
MX2007005640A MX2007005640A (es) 2004-11-10 2005-11-10 Moleculas que promueven la hematopoyesis.
AU2005303887A AU2005303887A1 (en) 2004-11-10 2005-11-10 Molecules which promote hematopoiesis
EA200701031A EA200701031A1 (ru) 2004-11-10 2005-11-10 Молекулы, способствующие гематопоэзу
EP05819212A EP1812461A2 (en) 2004-11-10 2005-11-10 Molecules which promote hematopoiesis
JP2007540582A JP2008519589A (ja) 2004-11-10 2005-11-10 造血を促進する分子
CA002586915A CA2586915A1 (en) 2004-11-10 2005-11-10 Molecules which promote hematopoiesis
BRPI0518025-2A BRPI0518025A (pt) 2004-11-10 2005-11-10 moléculas que promovem hematopoiese
EA200800109A EA200800109A1 (ru) 2005-06-23 2006-06-23 Суправалентные соединения
US11/917,991 US20100145006A1 (en) 2005-06-23 2006-06-23 Supravalent compounds
PCT/EP2006/006097 WO2006136450A2 (en) 2005-06-23 2006-06-23 Supravalent compounds
CA002648732A CA2648732A1 (en) 2005-06-23 2006-06-23 Supravalent compounds
EP06754540A EP1907417A2 (en) 2005-06-23 2006-06-23 Supravalent compounds
JP2008517435A JP2008546732A (ja) 2005-06-23 2006-06-23 多価化合物
BRPI0611745-7A BRPI0611745A2 (pt) 2005-06-23 2006-06-23 compostos supravalentes
IL182843A IL182843A0 (en) 2004-11-10 2007-04-29 Peptides that bind to the erythropoietin receptor, compounds incorporating the same, methods for the preparation thereof and pharmaceutical compositions containing the same
NO20072856A NO20072856L (no) 2004-11-10 2007-06-05 Molekyler som fremmer hematopoiese
IL188153A IL188153A0 (en) 2005-06-23 2007-12-16 Supravalent peptide compounds and processor for the preparation thereof

Applications Claiming Priority (14)

Application Number Priority Date Filing Date Title
DE102004054422.0 2004-11-10
DE102004054422 2004-11-10
EP04029536 2004-12-14
EP04029536.2 2004-12-14
US11/041,207 2005-01-25
US11/041,207 US7589063B2 (en) 2004-12-14 2005-01-25 Molecules which promote hematopoiesis
EP05002113.8 2005-02-02
EP05002113 2005-02-02
EP05012637.4 2005-06-13
EP05012637 2005-06-13
EP05013594 2005-06-23
EP05013594.6 2005-06-23
EP05020035 2005-09-14
EP05020035.1 2005-09-14

Publications (2)

Publication Number Publication Date
WO2006050959A2 true WO2006050959A2 (en) 2006-05-18
WO2006050959A3 WO2006050959A3 (en) 2006-12-21

Family

ID=36336855

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/EP2005/012075 WO2006050959A2 (en) 2004-11-10 2005-11-10 Molecules which promote hematopoiesis

Country Status (7)

Country Link
EP (1) EP1812461A2 (ko)
JP (1) JP2008519589A (ko)
KR (1) KR20070092706A (ko)
AU (1) AU2005303887A1 (ko)
CA (1) CA2586915A1 (ko)
NO (1) NO20072856L (ko)
WO (1) WO2006050959A2 (ko)

Cited By (98)

* Cited by examiner, † Cited by third party
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WO2007101698A2 (en) * 2006-03-09 2007-09-13 Aplagen Gmbh Modified molecules which promote hematopoiesis
EP2018835A2 (de) 2007-07-09 2009-01-28 Augustinus Bader Wirkstoff abgebendes Pflaster
WO2009094551A1 (en) 2008-01-25 2009-07-30 Amgen Inc. Ferroportin antibodies and methods of use
US20090209457A1 (en) * 2008-02-15 2009-08-20 Affymax, Inc. Treatment of anti-erythropoietin antibody-mediated disorders with synthetic peptide-based epo receptor agonists
US7589063B2 (en) 2004-12-14 2009-09-15 Aplagen Gmbh Molecules which promote hematopoiesis
WO2010056981A2 (en) 2008-11-13 2010-05-20 Massachusetts General Hospital Methods and compositions for regulating iron homeostasis by modulation bmp-6
WO2011012306A2 (en) 2009-07-30 2011-02-03 Aplagen Gmbh Use of emps for antagonising epo-stimulatory effects on epo-responsive tumors while maintaining erythropoiesis
US7919461B2 (en) * 2005-06-03 2011-04-05 Affymax, Inc. Erythropoietin receptor peptide formulations and uses
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