WO2003058227A1 - Capillary electrophoresis chip apparatus for detecting polymorphism of nucleotide and mononucleotide - Google Patents
Capillary electrophoresis chip apparatus for detecting polymorphism of nucleotide and mononucleotide Download PDFInfo
- Publication number
- WO2003058227A1 WO2003058227A1 PCT/CN2002/000857 CN0200857W WO03058227A1 WO 2003058227 A1 WO2003058227 A1 WO 2003058227A1 CN 0200857 W CN0200857 W CN 0200857W WO 03058227 A1 WO03058227 A1 WO 03058227A1
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- WO
- WIPO (PCT)
- Prior art keywords
- electrophoresis chip
- layer
- capillary electrophoresis
- channel
- capillary
- Prior art date
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Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
- G01N27/44756—Apparatus specially adapted therefor
- G01N27/44791—Microapparatus
Definitions
- Capillary electrophoresis chip device for detecting nucleotide and single nucleotide polymorphism
- a capillary electrophoresis chip device for detecting single nucleotide polymorphism belongs to the technical field of capillary electrophoresis chip devices. Background technique
- SNPs Single nucleotide polymorphisms
- SNPs Single nucleotide polymorphisms
- Finding and studying SNPs is one of the important contents and goals of the Human Genome Project.
- SNP As a marker of polymorphism, SNP has great significance in anthropology, medical diagnosis, disease research, environmental susceptibility factor research, drug screening, and forensic identification.
- Direct sequencing of DNA is the most direct method for detecting SNP, but it has a large workload and low efficiency. People are currently looking for high-throughput methods.
- Detection methods based on DNA melting kinetics are a class of high-throughput methods that include gradient denaturing gel electrophoresis, constant denaturing gel electrophoresis, capillary denaturing gel electrophoresis, and denaturing high-performance liquid chromatography.
- gradient denaturing gel electrophoresis constant denaturing gel electrophoresis
- capillary denaturing gel electrophoresis capillary denaturing gel electrophoresis
- denaturing high-performance liquid chromatography it is necessary to add a modifying agent, and the influence mechanism of the modifying agent on electrophoresis and chromatography is complicated.
- the selection of the modifying agent, the setting of the electrophoresis or chromatography conditions, and the realization of the gradient are all major technical problems.
- the object of the present invention is to provide a capillary electrophoresis chip device for detecting nucleotides and single nucleotide polymorphisms by replacing temperature with denaturant based on high-speed, high-efficiency, and low-consumption capillary electrophoresis.
- the invention is characterized in that it comprises: an upper channel layer having a microfluidic channel and an electrode hole structure for sample application, a middle electrode layer that closes the upper microfluidic channel to form a complete capillary and provides a desired voltage to an electrophoresis chip, and electrophoresis A heating layer with a stable temperature gradient is provided.
- the upper, middle and lower layers are thermally conductive and adhere to each other.
- the microfluidic channel is any one of one-dimensional, two-dimensional, or multidimensional microfluidic channels.
- the cross-sectional width or diameter of the microfluidic channel is between 5 and 200 ⁇ m, the depth of the fluid channel is between 5 and 200 ⁇ m, and the length of the electrophoretic separation channel is between 1 and 30 cm.
- the material of the middle electrode layer is any one of gold, platinum or graphite.
- the upper surface of the middle electrode layer is coated with a layer of polydimethylsiloxane (PDMS). All
- PDMS polydimethylsiloxane
- All The heating layer is provided with temperature control elements that are spaced apart into two or more groups and each maintain a different constant temperature in order to form a stable spatial temperature gradient.
- the stable temperature gradient of the heating layer is a time temperature gradient formed by gradually increasing the temperature of the entire chip.
- FIG. 1 is a schematic diagram of a capillary electrophoresis chip device for detecting nucleotide and single nucleotide polymorphisms proposed by the present invention.
- FIG. 2 is a schematic top view of the upper channel layer of the preferred embodiment of the device for detecting nucleotide and single nucleotide polymorphisms proposed by the present invention.
- FIG. 3 is a schematic plan view of an intermediate electrode layer of a preferred embodiment of the device for detecting nucleotide and single nucleotide polymorphisms according to the present invention.
- FIG. 4 is a schematic top view of the lower heating layer of the preferred embodiment of the device for detecting nucleotide and single nucleotide polymorphisms proposed by the present invention.
- Fig. 5 is a longitudinal sectional view in the direction of Figs. 1A-A of the preferred embodiment of the apparatus for detecting nucleotide and single nucleotide polymorphisms proposed by the present invention.
- FIG. 6 is an enlarged schematic top view of a dotted frame in FIG. 2.
- FIG. 7 is a schematic diagram of a pretreatment process of a sample used in a device according to a preferred embodiment of the present invention.
- FIG. 1 is a schematic diagram of the upper and lower layers of FIG. 2 and FIG. 3.
- 1 is an electrode hole
- 2 is a first-dimensional electrophoresis separation channel
- 3 is the second-dimensional electrophoretic separation channel, which has 50 channels in total, each tube is 100 ⁇ m wide, with a pitch of 100 ⁇ m, and a depth of 10 ⁇ m.
- the total length of the electrophoretic separation channel is 30cm.
- 4 is the upper fluid channel layer, that is, the channel layer.
- the channel layer 4 is made of polydimethylsiloxane (PDMS), and any one of other silicone rubber, plastic, quartz, and glass can also be used.
- PDMS polydimethylsiloxane
- the microfabrication method of the electrode hole 1 includes casting, embossing, etching, or photolithography, and it depends on the material of the channel layer.
- the cross section of the electrophoretic separation channel, that is, the microfluidic channel, on the channel layer 4 is rectangular, and may be any other geometric shape.
- the electrophoretic separation channel is an open capillary groove, and the capillary groove is closed with a cover sheet to form a complete capillary.
- the channel layer running through the electrophoretic separation channel must also be Only the cover sheet forms a complete liquid pool structure.
- 5 is an electrode on the middle electrode layer 6.
- the electrode layer 6 can close the upper electrophoretic separation channel to form a complete capillary tube with an electrode that provides the required voltage for electrophoresis.
- the electrode layer 6 can be formed by depositing metal on glass and then etching.
- the metal layer is gold, or any one of platinum or graphite can be used.
- An insulating layer is formed on the metal layer by an oxidation method.
- the metal electrode is exposed only at the position corresponding to the electrode hole 1 on the channel layer, or the PDMS layer is directly coated. Only the metal electrode is exposed at the position of the electrode hole 1. After the channel layer 4 and the electrode layer 6 are adhered, the solution in the electrode hole 1 and the bottom of the hole formed by the electrode layer 6 expose the bottom electrode contact.
- the electrode 5 can also be designed in a needle shape, inserted into the electrode hole 1 from above the channel layer 4 to be in contact with the solution, and then acting on the solution along the electrophoretic separation channel '.
- the heating layer has two sets of temperature control elements for heating and cooling.
- the heating element 7 maintains a constant bottom temperature and the cooling element 8 maintains a constant bottom temperature.
- the heat between the two is conducted through the glass of the electrode layer 6 to form a stable bottom space temperature gradient in the glass.
- a semiconductor temperature control element for heating and cooling elements may also be used as a resistor.
- FIG. 6 is an enlarged schematic top view of the bottom of the dotted frame in FIG. 2.
- FIG. 9 is the channel connected to electrode hole 1, and the width is 20 ⁇ .
- 10 is the sample.
- 2 is a first-dimensional electrophoretic separation pipe
- 3 is a second-dimensional electrophoretic separation pipe. Arrows indicate corresponding electrophoretic separation directions.
- the sample 10 can be prevented from penetrating into the second-dimensional electrophoretic separation pipe 3, and during the second-dimensional electrophoretic separation process, the second-dimensional electrophoretic separation pipe 3 and the channel 9 connecting the electrode hole 1 to the first Disturbance of the dimensional electrophoresis separation process. It can also make the band obtained by the first-dimensional electrophoretic separation completely enter the second-dimensional electrophoretic separation channel 3 without entering other adjacent pipelines at the same time.
- FIG. 5 is a longitudinal cross-sectional view taken along the line AA of FIG. 1, and the structure is as described above.
- FIG. 7 is a schematic diagram of a pretreatment process of a sample used in a device according to a preferred embodiment of the present invention.
- 11 is a PCR polymerase chain reaction process
- 12 is a denaturation and renaturation process.
- B represents any base in AGCT
- B * represents that the site is a SNP site
- "+" and "one” are used to distinguish the two strands of DNA.
- Figure 7 shows the case of SNP. Four DNA fragments of the same length were obtained, and some of them had mismatches. If no SNP is present, there can be only one type of DNA fragment. The process of detecting SNP by the present invention will be briefly described in conjunction with the figure.
- First-dimensional electrophoresis allows efficient restriction of DNA fragments of different lengths. But the DNA with the SNP site and the same length of DNA fragment still exist in the same band.
- a certain voltage is applied across the second-dimensional pipeline to prevent the sample from diffusing into the second-dimensional electrophoretic separation channel 3.
- the second two-dimensional electrophoretic separation channel is a row of arrays. The bands separated by the first-dimensional electrophoresis enter the second-dimensional array electrophoresis channel 3 through voltage control to continue electrophoresis.
- the heating layer provides a gradually increasing temperature gradient in the direction of electrophoresis.
- the melting temperature of the mismatched DNA is lower than that of the non-mismatched DNA.
- the temperature of the DNA is melted first, and then it is firstly subjected to a greater blocking force and separated from other DNA fragments of the same length that have not yet melted. As long as the system resolution is high enough, DNA fragments of the same length that have not yet been melted can be separated. If only one band is isolated, it can be concluded that there is no SNP site; if more than one band is isolated, it can be concluded that SNP exists. Based on the above information, it can also indicate which DNA restriction fragment the SNP exists on.
- Temperature gradients can also be considered to achieve temperature gradients in time.
- the electrophoresis chip is uniformly heated, and the heating rate is controlled, and the same purpose as the foregoing can be achieved.
- ordinary capillary tubes can also be used for one-dimensional electrophoresis. DNA fragments of different lengths are separated, and then the time and temperature gradient is used to continue the electrophoresis.
- the present application not only has the advantages of high speed, high efficiency, and few samples that are unique to capillary electrophoresis, but also avoids the use of denaturants, makes the detection process easy to control, and its gradient easy to implement.
- the capillary electrophoresis chip device of the present invention can be widely used for detecting nucleotide and single nucleotide polymorphisms.
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- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Molecular Biology (AREA)
- Analytical Chemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Electrochemistry (AREA)
- Physics & Mathematics (AREA)
- Dispersion Chemistry (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- General Physics & Mathematics (AREA)
- Immunology (AREA)
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- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Investigating Or Analysing Biological Materials (AREA)
Description
Claims
Priority Applications (3)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US10/500,180 US7527719B2 (en) | 2001-11-30 | 2002-11-29 | Capillary electrophoresis chip apparatus for detecting nucleotide polymorphism and single nucleotide polymorphism |
EP02782653A EP1464955A4 (en) | 2001-11-30 | 2002-11-29 | CAPILLARY ELECTROPHORESIS CHIP APPARATUS FOR DETECTION OF POLYMORPHISMS OF NUCLEOTIDES AND MONONUCLEOTIDES |
AU2002349465A AU2002349465A1 (en) | 2001-11-30 | 2002-11-29 | Capillary electrophoresis chip apparatus for detecting polymorphism of nucleotide and mononucleotide |
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CNB011398310A CN1164939C (zh) | 2001-11-30 | 2001-11-30 | 检测核苷酸和单核苷酸多态性用的毛细管电泳芯片装置 |
CN01139831.0 | 2001-11-30 |
Publications (1)
Publication Number | Publication Date |
---|---|
WO2003058227A1 true WO2003058227A1 (en) | 2003-07-17 |
Family
ID=4675447
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/CN2002/000857 WO2003058227A1 (en) | 2001-11-30 | 2002-11-29 | Capillary electrophoresis chip apparatus for detecting polymorphism of nucleotide and mononucleotide |
Country Status (5)
Country | Link |
---|---|
US (1) | US7527719B2 (zh) |
EP (1) | EP1464955A4 (zh) |
CN (1) | CN1164939C (zh) |
AU (1) | AU2002349465A1 (zh) |
WO (1) | WO2003058227A1 (zh) |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2004059309A1 (en) * | 2002-12-20 | 2004-07-15 | Northeastern University | Precision controlled thermostat |
Families Citing this family (9)
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US7338637B2 (en) * | 2003-01-31 | 2008-03-04 | Hewlett-Packard Development Company, L.P. | Microfluidic device with thin-film electronic devices |
US9393566B2 (en) | 2008-06-23 | 2016-07-19 | Canon U.S. Life Sciences, Inc. | System and method for temperature referencing for melt curve data collection |
CN101670998B (zh) * | 2009-09-16 | 2011-10-26 | 哈尔滨工业大学 | 点面电极系统及利用该系统进行微流体驱动的方法 |
FR2958992B1 (fr) | 2010-04-14 | 2012-05-04 | Total Sa | Conduite pour le transport d'un fluide comprenant un hydrocarbure, et procede de fabrication d'une telle conduite. |
FR2958991B1 (fr) | 2010-04-14 | 2012-05-04 | Total Sa | Conduite pour le transport d'un fluide comprenant un hydrocarbure, et procede de fabrication d'une telle conduite. |
CN101851680B (zh) * | 2010-06-01 | 2013-03-27 | 厦门大学 | 生物芯片高通量杂交的方法 |
CN102928495A (zh) * | 2012-11-22 | 2013-02-13 | 谭啸 | 匀速升温-变性梯度凝胶多功能电泳系统 |
US10705060B2 (en) * | 2015-02-27 | 2020-07-07 | Waters Technologies Corporation | Spatial temperature gradients in liquid chromatography |
JP6984037B2 (ja) * | 2018-09-27 | 2021-12-17 | 京セラ株式会社 | 粒子分離計測デバイスおよび粒子分離計測装置 |
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JPH08233778A (ja) * | 1995-02-28 | 1996-09-13 | Shimadzu Corp | キャピラリ電気泳動チップ |
CN1168720A (zh) * | 1994-08-01 | 1997-12-24 | 罗克贺德马丁能源系统有限公司 | 对化学分析和合成进行微流体处理的装置和方法 |
CN1235674A (zh) * | 1996-08-26 | 1999-11-17 | 加利福尼亚大学董事会 | 集成在显微制造的毛细管电泳芯片上的电化学测定器 |
JP2000227414A (ja) * | 1999-02-08 | 2000-08-15 | Shimadzu Corp | マイクロチップ電気泳動用のチップユニット |
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2001
- 2001-11-30 CN CNB011398310A patent/CN1164939C/zh not_active Expired - Fee Related
-
2002
- 2002-11-29 WO PCT/CN2002/000857 patent/WO2003058227A1/zh not_active Application Discontinuation
- 2002-11-29 US US10/500,180 patent/US7527719B2/en not_active Expired - Fee Related
- 2002-11-29 EP EP02782653A patent/EP1464955A4/en not_active Withdrawn
- 2002-11-29 AU AU2002349465A patent/AU2002349465A1/en not_active Abandoned
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CN1168720A (zh) * | 1994-08-01 | 1997-12-24 | 罗克贺德马丁能源系统有限公司 | 对化学分析和合成进行微流体处理的装置和方法 |
JPH08233778A (ja) * | 1995-02-28 | 1996-09-13 | Shimadzu Corp | キャピラリ電気泳動チップ |
CN1235674A (zh) * | 1996-08-26 | 1999-11-17 | 加利福尼亚大学董事会 | 集成在显微制造的毛细管电泳芯片上的电化学测定器 |
JP2000227414A (ja) * | 1999-02-08 | 2000-08-15 | Shimadzu Corp | マイクロチップ電気泳動用のチップユニット |
WO2000058721A1 (de) * | 1999-03-30 | 2000-10-05 | INSTITUT FüR MIKROTECHNIK MAINZ GMBH | Elektrophoresechip sowie gerät zum betreiben eines elektrophoresechips |
WO2001068898A2 (en) * | 2000-03-14 | 2001-09-20 | Amersham Biosciences Corp | Pseudoradial electrophoresis chip |
CN1320818A (zh) * | 2001-04-23 | 2001-11-07 | 清华大学 | 用于化学分析的毛细管电泳芯片的制备方法 |
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Publication number | Priority date | Publication date | Assignee | Title |
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WO2004059309A1 (en) * | 2002-12-20 | 2004-07-15 | Northeastern University | Precision controlled thermostat |
Also Published As
Publication number | Publication date |
---|---|
US7527719B2 (en) | 2009-05-05 |
CN1353309A (zh) | 2002-06-12 |
CN1164939C (zh) | 2004-09-01 |
EP1464955A1 (en) | 2004-10-06 |
EP1464955A4 (en) | 2007-09-12 |
US20050161335A1 (en) | 2005-07-28 |
AU2002349465A1 (en) | 2003-07-24 |
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