WO2002055655A8 - Metylococcus capsulatus genes and dna array for the determination of gene expression in metylococcus capsulatus - Google Patents

Metylococcus capsulatus genes and dna array for the determination of gene expression in metylococcus capsulatus

Info

Publication number
WO2002055655A8
WO2002055655A8 PCT/NO2002/000019 NO0200019W WO02055655A8 WO 2002055655 A8 WO2002055655 A8 WO 2002055655A8 NO 0200019 W NO0200019 W NO 0200019W WO 02055655 A8 WO02055655 A8 WO 02055655A8
Authority
WO
WIPO (PCT)
Prior art keywords
capsulatus
metylococcus
determination
gene expression
genes
Prior art date
Application number
PCT/NO2002/000019
Other languages
French (fr)
Other versions
WO2002055655A2 (en
WO2002055655A3 (en
Inventor
Nils Kaare Birkeland
Ingvar Eidhammer
Inge Jonassen
Harald B Jensen
Torleiv Lien
Johan R Lillehaug
Ivar Lossius
Jonathan A Eisen
Claire M Fraser
A Scott Durkin
Steven L Salzberg
Original Assignee
Unifob Stiftelsen Universitets
Tigr
Nils Kaare Birkeland
Ingvar Eidhammer
Inge Jonassen
Harald B Jensen
Torleiv Lien
Johan R Lillehaug
Ivar Lossius
Jonathan A Eisen
Claire M Fraser
A Scott Durkin
Steven L Salzberg
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from NO20010239A external-priority patent/NO20010239D0/en
Priority claimed from NO20010235A external-priority patent/NO20010235D0/en
Application filed by Unifob Stiftelsen Universitets, Tigr, Nils Kaare Birkeland, Ingvar Eidhammer, Inge Jonassen, Harald B Jensen, Torleiv Lien, Johan R Lillehaug, Ivar Lossius, Jonathan A Eisen, Claire M Fraser, A Scott Durkin, Steven L Salzberg filed Critical Unifob Stiftelsen Universitets
Priority to AU2002241409A priority Critical patent/AU2002241409A1/en
Publication of WO2002055655A2 publication Critical patent/WO2002055655A2/en
Publication of WO2002055655A3 publication Critical patent/WO2002055655A3/en
Publication of WO2002055655A8 publication Critical patent/WO2002055655A8/en

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Genetics & Genomics (AREA)
  • Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Zoology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Wood Science & Technology (AREA)
  • Microbiology (AREA)
  • Physics & Mathematics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Medicinal Chemistry (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The invention related to method and systems for the determination of alteration of gene expression in M. capsulatus under a variery of conditions. A preferred embodiment of the invention relates to micro arrays comprising polynucleotides or oligonucleotides representative for a selective number of the genes of M. capsulatus.
PCT/NO2002/000019 2001-01-12 2002-01-14 Metylococcus capsulatus genes and dna array for the determination of gene expression in metylococcus capsulatus WO2002055655A2 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2002241409A AU2002241409A1 (en) 2001-01-12 2002-01-14 Metylococcus capsulatus genes and dna array for the determination of gene expression in metylococcus capsulatus

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
NO20010235 2001-01-12
NO20010239A NO20010239D0 (en) 2001-01-12 2001-01-12 DNA micro array comprising unique M. capsulatus sequences
NO20010239 2001-01-12
NO20010235A NO20010235D0 (en) 2001-01-12 2001-01-12 DNA micro array

Publications (3)

Publication Number Publication Date
WO2002055655A2 WO2002055655A2 (en) 2002-07-18
WO2002055655A3 WO2002055655A3 (en) 2002-12-05
WO2002055655A8 true WO2002055655A8 (en) 2003-08-28

Family

ID=26649293

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/NO2002/000019 WO2002055655A2 (en) 2001-01-12 2002-01-14 Metylococcus capsulatus genes and dna array for the determination of gene expression in metylococcus capsulatus

Country Status (2)

Country Link
AU (1) AU2002241409A1 (en)
WO (1) WO2002055655A2 (en)

Families Citing this family (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
DE10242433A1 (en) * 2002-09-11 2004-03-25 Henkel Kgaa Chip carrying probes for specific genes, useful for rapid monitoring of organism status, particularly during fermentation
AU2003277059A1 (en) * 2002-10-01 2004-04-23 Nimblegen Systems, Inc. Microarrays having multiple oligonucleotides in single array features

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6607885B1 (en) * 1999-10-15 2003-08-19 E. I. Du Pont De Nemours And Company Method for high-density microarray medicated gene expression profiling

Also Published As

Publication number Publication date
AU2002241409A1 (en) 2002-07-24
WO2002055655A2 (en) 2002-07-18
WO2002055655A3 (en) 2002-12-05

Similar Documents

Publication Publication Date Title
WO2001034842A3 (en) Pcr amplification on microarrays of gel immobilized oligonucleotides
WO2004039953A3 (en) Array oligomer synthesis and use.
WO2006138257A3 (en) Single molecule arrays for genetic and chemical analysis
HK1188607A1 (en) Random array dna analysis by hybridization dna
WO2001036682A3 (en) Long oligonucleotide arrays
ATE231559T1 (en) EXPRESSION DETECTION THROUGH HYBRIDIZATION OF HIGH OCCUPANCY OLIGONUCLEOTIDE ARRAYS
AU2003277059A1 (en) Microarrays having multiple oligonucleotides in single array features
WO2002006531A3 (en) Nucleic acid hairpin probes and uses thereof
WO2002018631A3 (en) Diagnosis of illnesses or predisposition to certain illnesses
AU2001242124A1 (en) Identification of biological (micro) organisms by detection of their homologous nucleotide sequences on arrays
EP2752488A3 (en) Antisense design
ZA200107497B (en) Methods for detection of nucleic acid polymorphisms using peptide-labeled oligonucleotides and antibody arrays.
WO2003020968A3 (en) Method for analyzing nucleic acid sequences and gene expression
WO2003051901A3 (en) Pseudonucleotide comprising an intercalator
WO2005040419A8 (en) Oligonucleotide microarray
WO2005097205A3 (en) Dna virus microrna and methods for inhibiting same
WO2002004597A3 (en) Method and apparatus for synthesis of arrays of dna probes
WO2001051667A3 (en) Informative nucleic acid arrays and methods for making same
WO2003052099A3 (en) Methods of parallel gene cloning and analysis
WO2003095608A3 (en) Dna microarrays comprising active chromatin elements and comprehensive profiling therewith
AU2003285285A1 (en) Nucleic acid array comprising selective monocytic macrophagic genes
WO2002055655A8 (en) Metylococcus capsulatus genes and dna array for the determination of gene expression in metylococcus capsulatus
WO2002018655A3 (en) Compositions and methods for the generation of single stranded cdna microarrays with accurate universal quantitation reference
WO2003029435A3 (en) Detection of polynucleotide hybridization
EP1134292A3 (en) Oligonucleotides for detection of vibrio parahaemolyticus and detection method for vibrio parahaemolyticus using the same oligonucleotides

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CO CR CU CZ DE DK DM DZ EC EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ OM PH PL PT RO RU SD SE SG SI SK SL TJ TM TN TR TT TZ UA UG US UZ VN YU ZA ZM ZW

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZM ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GQ GW ML MR NE SN TD TG

121 Ep: the epo has been informed by wipo that ep was designated in this application
DFPE Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101)
AK Designated states

Kind code of ref document: A3

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CO CR CU CZ DE DK DM DZ EC EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ OM PH PL PT RO RU SD SE SG SI SK SL TJ TM TN TR TT TZ UA UG US UZ VN YU ZA ZM ZW

AL Designated countries for regional patents

Kind code of ref document: A3

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZM ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GQ GW ML MR NE SN TD TG

WR Later publication of a revised version of an international search report
REG Reference to national code

Ref country code: DE

Ref legal event code: 8642

122 Ep: pct application non-entry in european phase
NENP Non-entry into the national phase in:

Ref country code: JP

WWW Wipo information: withdrawn in national office

Country of ref document: JP

DPE2 Request for preliminary examination filed before expiration of 19th month from priority date (pct application filed from 20040101)