WO2001092569A2 - Formulation pour amplification en chaine par polymerase et recipient contenant celle-ci - Google Patents
Formulation pour amplification en chaine par polymerase et recipient contenant celle-ci Download PDFInfo
- Publication number
- WO2001092569A2 WO2001092569A2 PCT/GB2001/002265 GB0102265W WO0192569A2 WO 2001092569 A2 WO2001092569 A2 WO 2001092569A2 GB 0102265 W GB0102265 W GB 0102265W WO 0192569 A2 WO0192569 A2 WO 0192569A2
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- formulation
- vessel
- polymerase
- chain reaction
- effecting
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/686—Polymerase chain reaction [PCR]
Definitions
- the present invention relates to formulations for use in effecting a Polymerase Chain Reaction and also to vessels containing such a formulation and which are intended for use in conducting such a reaction.
- PCR Polymerase Chain Reaction
- This lyophilised mixture has the advantage that it simplifies the multi-step PCR manipulation in that all components (except target) for effecting amplification are included in the pre-prepared mixture such that all that is required is addition of an aqueous sample containing (or potentially' containing) the target. Furthermore, the water soluble dye facilitates identification of complete mixing of the PCR reagent and test sample and saves the trouble of adding a sample loading buffer which is otherwise required for analysis of PCR products. As a result, the formulations of US-A-5 861 251 provide the advantage of avoiding carry-over contamination into the PCR reaction mix. However detection of the amplified product is effected by running the product mixture on a gel. This necessities opening of the tube, to apply the product mixture to the gel, thus once again giving rise to the possibility of cross-contamination.
- a formulation for use in effecting a Polymerase Chain Reaction comprising a dried composition of reagents including reaction buffer, dNTPs, at least two primers and a polymerase and said formulation being re-hydratable to be capable of effecting amplification of a target nucleic acid sequence of interest characterised in that the formulation incorporates a fluorescent reporter molecule capable of reporting by homologous detection the presence of amplified nucleic acid produced by the Polymerase Chain Reaction..
- the formulation of the invention is such that only a single addition of aqueous target sample to the formulation is required to produce an aqueous reaction mixture containing all necessary components for PCR amplification of target nucleic acid sequence.
- the formulation of the invention does however have the significant additional advantage that the presence, in the formulation, of the fluorescent reporter molecule means homologous detection may be used.
- the progress of the reaction may be followed by real-time detection techniques avoiding the need for post-reaction manipulation of the product mixture (e.g. transferring the mixture to a gel, or even opening a vessel in which the product mixture is contained) thereby avoiding any possibility of cross-contamination.
- This has dramatic consequences for the set-up of laboratories that PERform PCR-based diagnostic reactions as, currently, extreme care has to be taken during the performance of the reaction to prevent cross-contamination.
- no particular contamination controls would be needed other than those routine in a molecular biology laboratory.
- There are also additional benefits including having much more defined reaction conditions (as essentially all the reactants could come from the same batch, convenience, longer shelf life etc).
- the invention also provides, according to a second aspect thereof, a vessel (e.g. a reaction tube) containing a pre-measured amount of the formulation of the invention.
- a vessel e.g. a reaction tube
- the vessels may be provided with a suitable closure element and supplied to end users who, after removal of the closure element merely, need only to add the aqueous sample and then re-close the vessel.
- the end user may be a person in a laboratory where the PCR reaction is then effected. Alternatively the end user may be out "on-site" collecting samples which can then be added to the vessel as soon as collected, the vessel then being sent to a laboratory for conducting the PCR reaction.
- the inner surface of the vessel (adjacent the mouth thereof) and the outer surface of the closure element may be provided with inter-engageable formations allowing insertion of the closure element into the vessel but preventing withdrawal therefrom.
- inter-engagable formations should be positioned such that the closure element is capable of being removable provided that it has not been inserted into the vessel beyond a certain degree.
- the dried composition may be incorporated into the vessel and the closure element removably applied thereto. Subsequently the closure element may be removed to permit addition of the sample and then subsequently inserted sufficiently far into the vessel so that it becomes non-removable.
- the formulation of the invention may be prepared by lyophilisation of an aqueous solution of the required components, e.g. by lyophilisation using the procedures disclosed in US-A-5 861 251.
- the solution includes a stabiliser which may for example be glucose, glucitol or trehalose.
- the dried formulation of the invention may be such that, per ml of reconstituted reaction medium, it comprises: Component Amount
- Stabiliser e.g. trehalose 0.1-15% w/w
- the PCR reaction may be conducted by procedures well known in the art, e.g. using thermal cycling.
- the fluorescent reporter molecule included in the formulation of the invention may for example be one which reports a change in the amount of double stranded DNA present in the reaction, e.g. an intercalating dye such as Ethidium Bromide, CyBr- Green or PicoGreen.
- the fluorescent reporter molecule may be one which works in conjunction with a quencher moiety so as to be capable of reporting on the presence of specific nucleotide sequences in the mixture and may, for example, be a TaqMan probe, Molecular Beacon, Sunrise primer and Scorpion primer (Registered Trade Marks).
- the polymerase may be a DNA polymerase and may be a thermally stable polymerase, e.g. Taq polymerase.
- Taq polymerase e.g. a thermally stable polymerase
- the polymerase in the formulation of the invention is a "hot-start" polymerase.
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Biophysics (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
Priority Applications (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
EP01936610A EP1290223A2 (fr) | 2000-05-31 | 2001-05-23 | Formulation pour amplification en chaine par polymerase et recipient contenant celle-ci |
AU2001262483A AU2001262483A1 (en) | 2000-05-31 | 2001-05-23 | Formulation for polymerase chain reaction and vessel containing same |
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
GB0013043.5 | 2000-05-31 | ||
GB0013043A GB0013043D0 (en) | 2000-05-31 | 2000-05-31 | Formulation for polymerase chain reaction and vessel containing same |
GB0013863.6 | 2000-06-07 | ||
GB0013863A GB0013863D0 (en) | 2000-06-07 | 2000-06-07 | Formulation for polymerase chain reaction and vessel containing same |
Publications (2)
Publication Number | Publication Date |
---|---|
WO2001092569A2 true WO2001092569A2 (fr) | 2001-12-06 |
WO2001092569A3 WO2001092569A3 (fr) | 2002-03-28 |
Family
ID=26244374
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/GB2001/002265 WO2001092569A2 (fr) | 2000-05-31 | 2001-05-23 | Formulation pour amplification en chaine par polymerase et recipient contenant celle-ci |
Country Status (3)
Country | Link |
---|---|
EP (1) | EP1290223A2 (fr) |
AU (1) | AU2001262483A1 (fr) |
WO (1) | WO2001092569A2 (fr) |
Cited By (25)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1350855A2 (fr) * | 2002-04-01 | 2003-10-08 | Agilent Technologies, Inc. - a Delaware corporation - | Tests d'hybridation reposant sur un système en rangées (array) |
EP1498492A1 (fr) * | 2003-07-15 | 2005-01-19 | Lukas Bestmann | Appareil pour la préparation d'échantillons |
WO2005118849A1 (fr) * | 2004-06-04 | 2005-12-15 | Abacus Diagnostica Oy | Procédé de stabilisation des réactifs de test, les conteneurs de réactifs avec des réactifs de test stabilisés et leur utilisation |
WO2006000648A1 (fr) * | 2004-06-29 | 2006-01-05 | Wallac Oy | Analyse d'acide nucleique integree |
US7776530B2 (en) | 2004-06-29 | 2010-08-17 | Wallac Oy | Integrated nucleic acid analysis |
EP2210955A3 (fr) * | 2006-05-23 | 2010-09-15 | Molecular Detection, Inc. | Kits de température ambiante stable pour diagnostics moléculaires |
WO2012010708A1 (fr) * | 2010-07-23 | 2012-01-26 | Aj Innuscreen Gmbh | Procédé, dispositif et kit d'analyse pour réactions de biologie moléculaire |
EP2574931A1 (fr) | 2011-09-29 | 2013-04-03 | Qiagen GmbH | Composition sèche comprenant un colorant de contrôle |
WO2013053855A1 (fr) | 2011-10-11 | 2013-04-18 | Qiagen Gmbh | Procédé de traitement d'échantillon et cartouche de traitement d'échantillon |
WO2013068107A1 (fr) | 2011-11-07 | 2013-05-16 | Qiagen Gmbh | Méthode de lyse et composition de lyse |
EP2730653A1 (fr) | 2012-11-07 | 2014-05-14 | QIAGEN GmbH | Procédé de lyse d'un échantillon biologique fixe |
US10875022B2 (en) | 2007-07-13 | 2020-12-29 | Handylab, Inc. | Integrated apparatus for performing nucleic acid extraction and diagnostic testing on multiple biological samples |
US10900066B2 (en) | 2006-03-24 | 2021-01-26 | Handylab, Inc. | Microfluidic system for amplifying and detecting polynucleotides in parallel |
US10913061B2 (en) | 2006-03-24 | 2021-02-09 | Handylab, Inc. | Integrated system for processing microfluidic samples, and method of using the same |
US11060082B2 (en) | 2007-07-13 | 2021-07-13 | Handy Lab, Inc. | Polynucleotide capture materials, and systems using same |
US11078523B2 (en) | 2003-07-31 | 2021-08-03 | Handylab, Inc. | Processing particle-containing samples |
US11141734B2 (en) | 2006-03-24 | 2021-10-12 | Handylab, Inc. | Fluorescence detector for microfluidic diagnostic system |
US11142785B2 (en) | 2006-03-24 | 2021-10-12 | Handylab, Inc. | Microfluidic system for amplifying and detecting polynucleotides in parallel |
US11266987B2 (en) | 2007-07-13 | 2022-03-08 | Handylab, Inc. | Microfluidic cartridge |
US11441171B2 (en) | 2004-05-03 | 2022-09-13 | Handylab, Inc. | Method for processing polynucleotide-containing samples |
US11453906B2 (en) | 2011-11-04 | 2022-09-27 | Handylab, Inc. | Multiplexed diagnostic detection apparatus and methods |
US11466263B2 (en) | 2007-07-13 | 2022-10-11 | Handylab, Inc. | Diagnostic apparatus to extract nucleic acids including a magnetic assembly and a heater assembly |
US11549959B2 (en) | 2007-07-13 | 2023-01-10 | Handylab, Inc. | Automated pipetting apparatus having a combined liquid pump and pipette head system |
US11788127B2 (en) | 2011-04-15 | 2023-10-17 | Becton, Dickinson And Company | Scanning real-time microfluidic thermocycler and methods for synchronized thermocycling and scanning optical detection |
US11806718B2 (en) | 2006-03-24 | 2023-11-07 | Handylab, Inc. | Fluorescence detector for microfluidic diagnostic system |
Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0512334A2 (fr) * | 1991-05-02 | 1992-11-11 | F. Hoffmann-La Roche Ag | Procédé pour la détection d'ADN dans un échantillon |
EP0674009A2 (fr) * | 1994-03-14 | 1995-09-27 | Becton, Dickinson and Company | Procédé et dispositif d'amplification d'acide nucléique |
WO1997010056A2 (fr) * | 1995-09-12 | 1997-03-20 | Becton Dickinson And Company | Dispositif et procede d'amplification et de dosage d'adn |
EP0834729A2 (fr) * | 1996-09-26 | 1998-04-08 | Becton, Dickinson and Company | Plaque à puits multiples et méthode d'analyse pour ADN |
US5861251A (en) * | 1996-10-15 | 1999-01-19 | Bioneer Corporation | Lyophilized reagent for polymerase chain reaction |
-
2001
- 2001-05-23 AU AU2001262483A patent/AU2001262483A1/en not_active Abandoned
- 2001-05-23 WO PCT/GB2001/002265 patent/WO2001092569A2/fr not_active Application Discontinuation
- 2001-05-23 EP EP01936610A patent/EP1290223A2/fr not_active Withdrawn
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0512334A2 (fr) * | 1991-05-02 | 1992-11-11 | F. Hoffmann-La Roche Ag | Procédé pour la détection d'ADN dans un échantillon |
EP0674009A2 (fr) * | 1994-03-14 | 1995-09-27 | Becton, Dickinson and Company | Procédé et dispositif d'amplification d'acide nucléique |
WO1997010056A2 (fr) * | 1995-09-12 | 1997-03-20 | Becton Dickinson And Company | Dispositif et procede d'amplification et de dosage d'adn |
EP0834729A2 (fr) * | 1996-09-26 | 1998-04-08 | Becton, Dickinson and Company | Plaque à puits multiples et méthode d'analyse pour ADN |
US5861251A (en) * | 1996-10-15 | 1999-01-19 | Bioneer Corporation | Lyophilized reagent for polymerase chain reaction |
Cited By (39)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1350855A2 (fr) * | 2002-04-01 | 2003-10-08 | Agilent Technologies, Inc. - a Delaware corporation - | Tests d'hybridation reposant sur un système en rangées (array) |
EP1350855A3 (fr) * | 2002-04-01 | 2003-11-19 | Agilent Technologies, Inc. - a Delaware corporation - | Tests d'hybridation reposant sur un système en rangées (array) |
EP1498492A1 (fr) * | 2003-07-15 | 2005-01-19 | Lukas Bestmann | Appareil pour la préparation d'échantillons |
WO2005007882A2 (fr) * | 2003-07-15 | 2005-01-27 | Dual, Jürg | Unite de preparation d'echantillons |
WO2005007882A3 (fr) * | 2003-07-15 | 2005-05-19 | Lukas Bestmann | Unite de preparation d'echantillons |
US11078523B2 (en) | 2003-07-31 | 2021-08-03 | Handylab, Inc. | Processing particle-containing samples |
US11441171B2 (en) | 2004-05-03 | 2022-09-13 | Handylab, Inc. | Method for processing polynucleotide-containing samples |
WO2005118849A1 (fr) * | 2004-06-04 | 2005-12-15 | Abacus Diagnostica Oy | Procédé de stabilisation des réactifs de test, les conteneurs de réactifs avec des réactifs de test stabilisés et leur utilisation |
JP2008501331A (ja) * | 2004-06-04 | 2008-01-24 | アバクス ディアグノスティカ オサケ ユキチュア | アッセイ試薬の安定化方法、安定化アッセイ試薬を収容した試薬容器およびその使用 |
US7972838B2 (en) | 2004-06-04 | 2011-07-05 | Abacus Diagnostica Oy | Method for stabilizing assay reagents, reagent container with stabilized assay reagents and use thereof |
US7776530B2 (en) | 2004-06-29 | 2010-08-17 | Wallac Oy | Integrated nucleic acid analysis |
WO2006000648A1 (fr) * | 2004-06-29 | 2006-01-05 | Wallac Oy | Analyse d'acide nucleique integree |
US8252536B2 (en) | 2004-06-29 | 2012-08-28 | Wallac Oy | Integrated nucleic acid analysis |
US11666903B2 (en) | 2006-03-24 | 2023-06-06 | Handylab, Inc. | Integrated system for processing microfluidic samples, and method of using same |
US11806718B2 (en) | 2006-03-24 | 2023-11-07 | Handylab, Inc. | Fluorescence detector for microfluidic diagnostic system |
US11959126B2 (en) | 2006-03-24 | 2024-04-16 | Handylab, Inc. | Microfluidic system for amplifying and detecting polynucleotides in parallel |
US11142785B2 (en) | 2006-03-24 | 2021-10-12 | Handylab, Inc. | Microfluidic system for amplifying and detecting polynucleotides in parallel |
US11141734B2 (en) | 2006-03-24 | 2021-10-12 | Handylab, Inc. | Fluorescence detector for microfluidic diagnostic system |
US11085069B2 (en) | 2006-03-24 | 2021-08-10 | Handylab, Inc. | Microfluidic system for amplifying and detecting polynucleotides in parallel |
US10900066B2 (en) | 2006-03-24 | 2021-01-26 | Handylab, Inc. | Microfluidic system for amplifying and detecting polynucleotides in parallel |
US10913061B2 (en) | 2006-03-24 | 2021-02-09 | Handylab, Inc. | Integrated system for processing microfluidic samples, and method of using the same |
EP2210955A3 (fr) * | 2006-05-23 | 2010-09-15 | Molecular Detection, Inc. | Kits de température ambiante stable pour diagnostics moléculaires |
US11549959B2 (en) | 2007-07-13 | 2023-01-10 | Handylab, Inc. | Automated pipetting apparatus having a combined liquid pump and pipette head system |
US11254927B2 (en) | 2007-07-13 | 2022-02-22 | Handylab, Inc. | Polynucleotide capture materials, and systems using same |
US11266987B2 (en) | 2007-07-13 | 2022-03-08 | Handylab, Inc. | Microfluidic cartridge |
US10875022B2 (en) | 2007-07-13 | 2020-12-29 | Handylab, Inc. | Integrated apparatus for performing nucleic acid extraction and diagnostic testing on multiple biological samples |
US11466263B2 (en) | 2007-07-13 | 2022-10-11 | Handylab, Inc. | Diagnostic apparatus to extract nucleic acids including a magnetic assembly and a heater assembly |
US11060082B2 (en) | 2007-07-13 | 2021-07-13 | Handy Lab, Inc. | Polynucleotide capture materials, and systems using same |
WO2012010708A1 (fr) * | 2010-07-23 | 2012-01-26 | Aj Innuscreen Gmbh | Procédé, dispositif et kit d'analyse pour réactions de biologie moléculaire |
US11788127B2 (en) | 2011-04-15 | 2023-10-17 | Becton, Dickinson And Company | Scanning real-time microfluidic thermocycler and methods for synchronized thermocycling and scanning optical detection |
EP2574931A1 (fr) | 2011-09-29 | 2013-04-03 | Qiagen GmbH | Composition sèche comprenant un colorant de contrôle |
WO2013053855A1 (fr) | 2011-10-11 | 2013-04-18 | Qiagen Gmbh | Procédé de traitement d'échantillon et cartouche de traitement d'échantillon |
CN104066849A (zh) * | 2011-10-11 | 2014-09-24 | 凯杰有限公司 | 样品处理方法和样品处理盒 |
EP3663408A1 (fr) | 2011-10-11 | 2020-06-10 | QIAGEN GmbH | Procédé de traitement d'échantillons et cartouche de traitement d'échantillons |
CN104066849B (zh) * | 2011-10-11 | 2017-04-19 | 凯杰有限公司 | 样品处理方法和样品处理盒 |
US11453906B2 (en) | 2011-11-04 | 2022-09-27 | Handylab, Inc. | Multiplexed diagnostic detection apparatus and methods |
WO2013068107A1 (fr) | 2011-11-07 | 2013-05-16 | Qiagen Gmbh | Méthode de lyse et composition de lyse |
EP2730653A1 (fr) | 2012-11-07 | 2014-05-14 | QIAGEN GmbH | Procédé de lyse d'un échantillon biologique fixe |
WO2014072366A1 (fr) | 2012-11-07 | 2014-05-15 | Qiagen Gmbh | Procédé de lyse d'un échantillon biologique fixé |
Also Published As
Publication number | Publication date |
---|---|
EP1290223A2 (fr) | 2003-03-12 |
AU2001262483A1 (en) | 2001-12-11 |
WO2001092569A3 (fr) | 2002-03-28 |
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