US20170183626A1

US20170183626A1 - Defined media for expansion and maintenance of pluripotent stem cells

Info

Publication number: US20170183626A1
Application number: US15/457,952
Authority: US
Inventors: Alireza Rezania
Original assignee: Janssen Biotech Inc
Current assignee: Janssen Biotech Inc
Priority date: 2012-03-07
Filing date: 2017-03-13
Publication date: 2017-06-29
Also published as: RU2018128383A3; RU2664467C2; JP2015509381A; PH12014501898A1; AU2018260810A1; AU2013230020B2; US9434920B2; MX354775B; EP2823037A1; AR090276A1; KR20140131999A; US9593307B2; US20160251615A1; US20130236973A1; WO2013134378A1; ZA201407241B; CA2866590A1; EP2823037A4; CN104160018A; RU2014140371A

Abstract

The present invention provides methods to promote the proliferation of undifferentiated pluripotent stem cells in defined media. Specifically, the invention provides a defined cell culture formulation for the culture, maintenance, and expansion of pluripotent stem cells, wherein culturing stem cells in the defined cell culture formulation maintains the pluripotency and karyotypic stability of the cells for at least 10 passages. Further disclosed is a cell population, grown under defined media conditions, that expresses OCT4, SOX2, NANOG, and FOXA2.

Description

CROSS REFERENCE TO RELATED APPLICATION

This application is a divisional application of U.S. patent application Ser. No. 15/150,349, filed May 9, 2016 (now allowed), which is a divisional application of U.S. patent application Ser. No. 13/787,173, filed Mar. 6, 2013 (now U.S. Pat. No. 9,434,920, issued Sep. 6, 2016), which claims the benefit of U.S. Provisional Patent Application Ser. No. 61/607,706, filed Mar. 7, 2012, which are incorporated herein by reference in their entirety for all purpose.

FIELD OF THE INVENTION

The present invention is in the field of proliferation and maintenance of pluripotent stem cells under defined media conditions.

BACKGROUND

Expansion of undifferentiated pluripotent stem cells has been traditionally employed “feeder” cells which provide sufficient factors to support attachment, proliferation and maintenance of pluripotency markers. Early methods for the generation and culture of human embryonic stem cells required the use of mouse embryonic fibroblast (MEF) feeder cells. Subsequent techniques included use of “conditioned media” and an extracellular matrix coating to replace feeder cells. Conditioned media is media that has been modified by feeder cells, such as MEFs. However, both methods suffer from inconsistencies in batches of conditioned media or feeder cells to continually support expansion of pluripotent stem cells. Furthermore, both systems provide undefined factors that may work differently on different pluripotent stem cells. Accordingly, establishing a defined, cheap, reproducible culture media that supports continual expansion of pluripotent stem cells is of great interest in the regenerative medicine field.
A defining feature of human embryonic stem cells (hES cells) is that the cells have a tendency to differentiate into various lineages. This unwanted differentiation can hamper uniform and directed differentiation required to subsequently generate desired specific cell types. In fact, both feeder cells and conditioned media culture conditions typically result in some level of unwanted differentiation, particularly around the edges of the growing ES cell colony or in the center of the colony.
Recent efforts have resulted in replacement of feeder cells or conditioned media with a host of replacement culture conditions, such as knock-out serum replacer (KSR) in the media (Chen et al., 2005, Nature Methods, 2:185-189). KSR contains a crude undefined fraction of bovine serum albumin (BSA). Others have shown long-term maintenance of pluripotency in a chemically defined media with FGF2, activin A, and insulin (Vallier et al., 2005, J Cell Sci, 118:4495-4509) Commercially available media formulations including mTeSR®1 media (StemCell Technologies, Vancouver, Canada) and StemPro™ (Invitrogen, CA) have also been previously used to maintain and proliferate human pluripotent stem cells. Additional prior art focusing on development of defined media include U.S. Pat. No. 7,449,334, U.S. Pat. No. 7,442,548, U.S. Pat. No. 7,005,252, US2008/0268534, U.S. Pat. No. 7,410,798, U.S. Pat. No. 7,297,539, and U.S. Pat. No. 6,800,480. Furthermore, a recent publication further refined the mTeSR®1 media to eight components (Nature Methods, 2011, 8:424-429) highlighting that even in defined media there exists unnecessary agent(s) that may actually slow the proliferation of ES cells or reduce their pluripotency state. The refined mTeSR®1 media consists of DMEM/F12 basal media supplemented with insulin, selenium, transferrin, ascorbic acid, FGF2 (bFGF), and TGFβ or nodal, having the pH adjusted with NaHCO₃.
It is therefore clear that there is still a need for fully defined media conditions that provide consistency regarding expansion of pluripotent cells while having minimal number of added components.

SUMMARY

The present invention provides a defined cell culture formulation for the culture, maintenance, and expansion of pluripotent stem cells, wherein the defined cell culture formulation comprises basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, and ascorbic acid; and wherein culturing stem cells in the defined cell culture formulation maintains the pluripotency and karyotypic stability of the stem cells for at least 10 passages. In some embodiments of the invention, the cell culture formulation further comprises insulin growth factor 1 (IGF-1). In some embodiments of the invention, the cell culture formulation comprises DMEM-F12.
The invention provides a defined cell culture formulation for the culture, maintenance, and expansion of pluripotent stem cells, wherein the defined cell culture formulation comprises basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, ascorbic acid, TRACE ELEMENTS C (1.20 mg/L AlCl₃.6H₂O, 0.17 mg/L AgNO₃, 2.55 mg/L Ba(C₂H₃O₂)₂, 0.12 mg/L KBr, 2.28 mg/L CdCl₂, 2.38 mg/L CoCl₂.6H₂O, 0.32 mg/L CrCl₃(anhydrous), 4.20 mg/L NaF, 0.53 mg/L GeO₂, 0.17 mg/L KI, 1.21 mg/L RbCl, and 3.22 mg/L ZrOCl₂.8H₂O), 4-(2-hydroxyethyl)-1-piperazine-ethanesulfonic acid, lithium chloride, glucose, GIBCO® CHEMICALLY DEFINED LIPID CONCENTRATE (“DEFINED LIPIDS”) (Life Technology Corporation) (100.0 ml/L ethyl alcohol (200 proof) and 2 mg/L Arachidonic Acid, 220 mg/L Cholesterol, 70 mg/L DL-alpha-Tocopherol Acetate, 0 mg/L Ethyl Alcohol 100%, 10 mg/L Linoleic Acid, 10 mg/L Linolenic Acid, 10 mg/L Myristic Acid, 10 mg/L Oleic Acid, 10 mg/L Palmitic Acid, 10 mg/L Palmitoleic Acid, 90000 mg/L Pluronic F-68, 10 mg/L Stearic Acid, and 2200 mg/L Tween 80® (polysorbate 80 sold under the trade name TWEEN 80 by ICI Americas, Inc. Bridgewater, N.J.)), and L-alanyl-L-glutamine dipeptide; and wherein culturing stem cells in the defined cell culture formulation maintains the pluripotency and karyotypic stability of the stem cells for at least 10 passages. In some embodiments of the invention, the cell culture formulation comprises MCDB-131.
In some embodiments of the invention, GIBCO® Insulin-Transferrin-Selenium-X (a basal medium supplement containing insulin (1.00 g/L), transferrin (0.55 g/L), selenium (sodium selenite 0.00067 g/L) and ethanolamine (0.20 g/L)) (“ITS-X”) (Life Technologies Corporation, Carlsbad, Calif.) provides the insulin, transferrin, and selenium for the defined cell culture formulation of the invention. In some embodiments of the invention, the ITS-X is present from about 0.5% to about 2%. In some embodiments of the invention, the ITS-X is present at about 1%. In some embodiments of the invention, the fatty acid free albumin is reagent grade. In some embodiments of the invention, the reagent grade fatty acid-free BSA is present from about 0.2% to about 2.5%. In some embodiments of the invention, the reagent grade fatty acid-free BSA is present at about 2%.
In some embodiments, the TGF-β ligand in the defined cell culture formulation of the invention is TGF-β1. In some embodiments of the invention, the TGF-β1 is present from about 0.5 ng/ml to about 10 ng/ml. In some embodiments of the invention, the TGF-B1 is present at about 1 ng/ml.
In some embodiments of the invention, the bFGF is present in the cell culture formulation from about 50 ng/ml to about 100 ng/ml. In some embodiments of the invention, the bFGF is present in the defined cell culture formulation at about 50 ng/ml. In some embodiments, the bFGF is present in the defined cell culture formulation at about 100 ng/ml.
In some embodiments of the invention, the insulin growth factor 1 (IGF-1) is present from about 10 ng/ml to about 50 ng/ml. In some embodiments of the invention, the IGF-1 is present in the defined cell culture formulation at about 20 ng/ml.
In some aspects of the invention, ascorbic acid is present in the defined cell culture formulation from about 0.2 mM to about 0.3 mM. In some aspects of the invention, ascorbic acid is present in the defined cell culture formulation at about 0.25 mM.
In an embodiment, the invention concerns a defined cell culture formulation consisting essentially of DMEM-F12 basal medium, ITS-X (insulin (1.00 g/L), transferrin (0.55 g/L), selenium (sodium selenite 0.00067 g/L) and ethanolamine (0.20 g/L)) (Life Technologies Corporation, Carlsbad, Calif.) (to provide insulin, transferrin, and selenium), fatty-acid free albumin, a TGF-β ligand, bFGF, insulin growth factor 1 (IGF-1), and ascorbic acid.
In an embodiment, the invention relates to a defined cell culture formulation consisting essentially of MCDB-131, (insulin (1.00 g/L), transferrin (0.55 g/L), selenium (sodium selenite 0.00067 g/L) and ethanolamine (0.20 g/L)) (Life Technologies Corporation, Carlsbad, Calif.), fatty-acid free albumin, a TGF-β ligand, bFGF, ascorbic acid, TRACE ELEMENTS C (1.20 mg/L AlCl₃.6H₂O, 0.17 mg/L AgNO₃, 2.55 mg/L Ba(C₂H₃O₂)₂, 0.12 mg/L KBr, 2.28 mg/L CdCl₂, 2.38 mg/L CoCl₂.6H₂O, 0.32 mg/L CrCl₃(anhydrous), 4.20 mg/L NaF, 0.53 mg/L GeO₂, 0.17 mg/L KI, 1.21 mg/L RbCl, and 3.22 mg/L ZrOCl₂.8H₂O), 4-(2-hydroxyethyl)-1-piperazine-ethanesulfonic acid, lithium chloride, glucose, GIBCO® CHEMICALLY DEFINED LIPID CONCENTRATE (Life Technology Corporation) (100.0 ml/L ethyl alcohol (200 proof) and 2 mg/L Arachidonic Acid, 220 mg/L Cholesterol, 70 mg/L DL-alpha-Tocopherol Acetate, 0 mg/L Ethyl Alcohol 100%, 10 mg/L Linoleic Acid, 10 mg/L Linolenic Acid, 10 mg/L Myristic Acid, 10 mg/L Oleic Acid, 10 mg/L Palmitic Acid, 10 mg/L Palmitoleic Acid, 90000 mg/L Pluronic F-68, 10 mg/L Stearic Acid, and 2200 mg/L Tween 80® (polysorbate 80 sold under the trade name TWEEN 80 by ICI Americas, Inc. Bridgewater, N.J.)), and L-alanyl-L-glutamine dipeptide.
In an embodiment, the invention concerns a method for the expansion of human pluripotent stem cells, where the method comprises culturing the human pluripotent stem cells on a feeder-free matrix in a defined cell culture formulation; where the defined cell culture formulation comprises basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, and ascorbic acid; and where culturing the stem cells in the defined cell culture formulation maintains the pluripotency and karyotypic stability of the cells for at least 10 passages. In some embodiments, the defined cell culture formulation further comprises insulin growth factor 1 (IGF-1). In some embodiments, the cell culture formulation comprises DMEM-F12.
In an embodiment, the invention relates to a method for the expansion of human pluripotent stem cells, where the method comprises culturing the human pluripotent stem cells on a feeder-free matrix in a defined cell culture formulation; where the defined cell culture formulation comprises basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, ascorbic acid, IGF-1, TRACE ELEMENTS C (1.20 mg/L AlCl₃.6H₂O, 0.17 mg/L AgNO₃, 2.55 mg/L Ba(C₂H₃O₂)₂, 0.12 mg/L KBr, 2.28 mg/L CdCl₂, 2.38 mg/L CoCl₂.6H₂O, 0.32 mg/L CrCl₃(anhydrous), 4.20 mg/L NaF, 0.53 mg/L GeO₂, 0.17 mg/L KI, 1.21 mg/L RbCl, and 3.22 mg/L ZrOCl₂.8H₂O), 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid, lithium chloride, glucose, GIBCO® CHEMICALLY DEFINED LIPID CONCENTRATE (Life Technology Corporation) (100.0 ml/L ethyl alcohol (200 proof) and 2 mg/L Arachidonic Acid, 220 mg/L Cholesterol, 70 mg/L DL-alpha-Tocopherol Acetate, 0 mg/L Ethyl Alcohol 100%, 10 mg/L Linoleic Acid, 10 mg/L Linolenic Acid, 10 mg/L Myristic Acid, 10 mg/L Oleic Acid, 10 mg/L Palmitic Acid, 10 mg/L Palmitoleic Acid, 90000 mg/L Pluronic F-68, 10 mg/L Stearic Acid, and 2200 mg/L Tween 80® (polysorbate 80 sold under the trade name TWEEN 80 by ICI Americas, Inc. Bridgewater, N.J.)), and L-alanyl-L-glutamine dipeptide. In some embodiments, the cell culture formulation used in the method for the expansion of human pluripotent stem cells, comprises MCDB-131.
An embodiment of the present invention is an in vitro cell population wherein greater than 50% of the cell population is positive for protein expression of OCT4, SOX2, NANOG, and FOXA2 with negative or low protein expression of SSEA-4 and ZFP42. The population is obtained by culturing pluripotent stem cells in a defined cell culture formulation comprising basal media supplemented with IGF-1, insulin, bFGF, TGF-B ligand, and fatty-acid free albumin; and where the defined cell culture formulation does not comprise ascorbic acid.
In some embodiments of the invention, the defined cell culture formulation comprises DMEM/F12 basal media. In some embodiments of the invention the cell culture formulation comprises insulin as ITS-X (insulin (1.00 g/L), transferrin (0.55 g/L), selenium (sodium selenite 0.00067 g/L) and ethanolamine (0.20 g/L)) (Life Technologies Corporation, Carlsbad, Calif.). In some embodiments of the invention, the ITS-X is present from about 0.5% to about 2%. In some aspects of the invention, the ITS-X is present at about 1%. In some embodiments of the invention, the fatty acid free albumin is reagent grade. In some aspects of the invention, the reagent grade fatty acid-free albumin is present from about 0.2% to about 2.5%. In some embodiments of the invention, the reagent grade fatty acid-free albumin is present at about 2%. In some aspects of the invention, the TGF-B ligand is TGF-B1. In some embodiments of the invention, the TGF-B1 is present from about 0.5 ng/ml to about 10 ng/ml. In some aspects of the invention, the TGF-B1 is present at about 1 ng/ml.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1A to FIG. 1D show phase-contrast images of H1 cells cultured for 3 passages in IH-3 (FIG. 1A), IH-1 (FIG. 1B), IH-6 (FIG. 1C), and mTeSR®1 (FIG. 1D).

FIG. 2A to FIG. 2C show phase-contrast images of H1 cells cultured for 10 passages in IH-3 (FIG. 2A), IH-1 (FIG. 2B), and mTeSR®1 (FIG. 2C) media.

FIG. 3A to FIG. 3C show phase-contrast images of H1 cells cultured for 18 passages in IH-3 (FIG. 3A), IH-1 (FIG. 3B), and mTeSR®1 (FIG. 3C) media.

FIG. 4A to FIG. 4F show data from real-time PCR analyses of the expression of the following genes in cells of the human embryonic stem cell line H1 cultured in media described in Example 1 and harvested at passages 1 to 5 (P1-P5); ZFP42 (FIG. 4A), SOX2 (FIG. 4B), POU5F1 (OCT4) (FIG. 4C), Nanog (FIG. 4D), FOXA2 (FIG. 4E), and AFP (FIG. 4F).

FIG. 5A to FIG. 5B show data from real-time PCR analyses of the expression of Nanog, POU5F1 (OCT4), SOX2, and ZFP42 (FIG. 5A), and of AFP and FOXA2 (FIG. 5B) in cells of the human embryonic stem cell line H1 cultured in media described in Example 1 and harvested at Passage 10.

FIG. 6A and FIG. 6B show data from real-time PCR analyses of the expression of ZFP42, SOX2, POU5F1 (OCT4), and Nanog (FIG. 6A), and of AFP and FOXA2 (FIG. 6B) in cells of the human embryonic stem cell line H1 cultured in media described in Example 1 and harvested at Passage 18.

FIG. 7A to FIG. 7F show FACS histogram expression profiles of the following markers in cells cultured for 18 passages in IH-3 media described in Example 1: Isotype control (FIG. 7A); KI-67 (FIG. 7B); OCT4 (FIG. 7C); SOX17 (FIG. 7D); FOXA2 (FIG. 7E); and SOX2 (FIG. 7F). Percentage expression for each marker is shown on each histogram.

FIG. 8A to FIG. 8F show images of cells cultured for 18 passages in IH-3 media described in Example 1 and immunostained for OCT-4, FOXA2, SOX2, and fluorescent labeling of DNA using DAPI. Images obtained for OCT4 (FIG. 8A), FOXA2 (FIG. 8B), and DAPI-stained DNA (FIG. 8C) were obtained from the same optical field but with different filters. Similarly, images for SOX2 (FIG. 8D), FOXA2 (FIG. 8E), and DAPI stained DNA (FIG. 8F) were obtained from the same optical field but with different filters

FIG. 9A to FIG. 9F depict phase-contrast images of H1 cells cultured for five passages in mTeSR®1 media (FIG. 9A) and in IH-3 (FIG. 9B), IH-3-1 (FIG. 9C), IH-3-2 (FIG. 9D), IH-3-3 (FIG. 9E), and IH-3-4 (FIG. 9F) formulations described in Example 2.

FIG. 10A to FIG. 10E show data from real-time PCR analyses of the expression of the following genes in cells of the human embryonic stem cell line H1 cultured in media described in Example 2 and harvested at Passage 5: ZFP42 (FIG. 10A), SOX2 (FIG. 10B), FOXA2 (FIG. 10C), Nanog (FIG. 10 D), and POU5F1 (OCT4) (FIG. 10E).

FIG. 11A to FIG. 11D depict phase-contrast images of H1 cells cultured for 20 passages in mTeSR®1 media (FIG. 1A), IH-3 (FIG. 11B), IH-1 (FIG. 11C), and IH-3RT (FIG. 11D) media formulations described in Example 3.

FIG. 12A to FIG. 12F show data from real-time PCR analyses of the expression of the following genes in cells of the human embryonic stem cell line H1 cultured for 15 passages in media described in Example 3: AFP (FIG. 12A), FOXA2 (FIG. 12B), SOX2 (FIG. 12C), Nanog (FIG. 12D), POU5F1 (OCT4) (FIG. 12E), and ZFP42 (FIG. 12F).

FIG. 13A to FIG. 13F show data from real-time PCR analyses of the expression of the following genes in cells of the human embryonic stem cell line H1 cultured for 20 passages in mTeSR®1 media, and IH-1 and IH-3 media described in Example 3: AFP FIG. 13A), FOXA2 (FIG. 13B), Nanog (FIG. 13C), POU5F1 (OCT4) (FIG. 13D), SOX2 (FIG. 13E), and ZFP42 (FIG. 13F).

FIG. 14A and FIG. 14B depict phase-contrast images of H1 cells cultured for 4 days in media formulations described in Example 5 containing Sigma BSA (FIG. 14A) or containing fatty acid free BSA (FIG. 14B).

FIG. 15A and FIG. 15B depict phase-contrast images of H1 cells cultured for three passages in media formulations described in Example 5 containing Sigma BSA (FIG. 15A) or containing fatty acid free BSA (FIG. 15B).

FIG. 16A to FIG. 16C show data from real-time PCR analyses of the expression of the following genes in cells of the human embryonic stem cell line H1 cultured for three passages in media formulations described in Example 5 containing Sigma BSA or fatty acid free BSA: AFP (FIG. 16A), MIXL1 (FIG. 16B), and T (BRY) (FIG. 16C).

FIG. 17A to FIG. 17D show data from real-time PCR analyses of the expression of the following genes in cells of the human embryonic stem cell line H1 cultured for ten passages in media formulations described in Example 6: SOX2 (FIG. 17A), POU5F1 (FIG. 17B), Nanog (FIG. 17C), and FOXA2 (FIG. 17C).

FIG. 18A to FIG. 18E depict phase-contrast images of H1 cells cultured for 10 passages in IH-3 (FIG. 18A), IH-3P-2 (FIG. 18B), IH-3P-3 (FIG. 18C), IH-3P-4 (FIG. 18D), and IH-3P-5 (FIG. 18E) media formulations described in Example 6.

DETAILED DESCRIPTION

For clarity of disclosure, and not by way of limitation, the detailed description of the invention is divided into the following subsections that describe or illustrate certain features, embodiments or applications of the present invention.

Definitions

Stem cells are undifferentiated cells defined by their ability at the single cell level to both self-renew and differentiate to produce progeny cells, including self-renewing progenitors, non-renewing progenitors, and terminally differentiated cells. Stem cells are also characterized by their ability to differentiate in vitro into functional cells of various cell lineages from multiple germ layers (endoderm, mesoderm and ectoderm), as well as to give rise to tissues of multiple germ layers following transplantation and to contribute substantially to most, if not all, tissues following injection into blastocysts.
Stem cells are classified by their developmental potential as: (1) totipotent, meaning able to give rise to all embryonic and extra-embryonic cell types; (2) pluripotent, meaning able to give rise to all embryonic cell types; (3) multipotent, meaning able to give rise to a subset of cell lineages but all within a particular tissue, organ, or physiological system (for example, hematopoietic stem cells (HSC) can produce progeny that include HSC (self-renewal), blood cell restricted oligopotent progenitors, and all cell types and elements (e.g., platelets) that are normal components of the blood); (4) oligopotent, meaning able to give rise to a more restricted subset of cell lineages than multipotent stem cells; and (5) unipotent, meaning able to give rise to a single cell lineage (e.g., spermatogenic stem cells).
Differentiation is the process by which an unspecialized (“uncommitted”) or less specialized cell acquires the features of a specialized cell such as, for example, a nerve cell or a muscle cell. A differentiated or differentiation-induced cell is one that has taken on a more specialized (“committed”) position within the lineage of a cell. The term “committed”, when applied to the process of differentiation, refers to a cell that has proceeded in the differentiation pathway to a point where, under normal circumstances, it will continue to differentiate into a specific cell type or subset of cell types, and cannot, under normal circumstances, differentiate into a different cell type or revert to a less differentiated cell type. De-differentiation refers to the process by which a cell reverts to a less specialized (or committed) position within the lineage of a cell. As used herein, the lineage of a cell defines the heredity of the cell, i.e., which cells it came from and what cells it can give rise to. The lineage of a cell places the cell within a hereditary scheme of development and differentiation. A lineage-specific marker refers to a characteristic specifically associated with the phenotype of cells of a lineage of interest and can be used to assess the differentiation of an uncommitted cell to the lineage of interest.
“Markers,” as used herein, are nucleic acid or polypeptide molecules that are differentially expressed in a cell of interest. In this context, differential expression means an increased level for a positive marker and a decreased level for a negative marker. The detectable level of the marker nucleic acid or polypeptide is sufficiently higher or lower in the cells of interest compared to other cells, such that the cell of interest can be identified and distinguished from other cells using any of a variety of methods known in the art.
“Basal Medium” refers to a solution of salts, nutrients, and vitamins that can support the growth of pluripotent stem cells in culture. Basal media may be selected among others from Dulbecco's modified Eagle's media (DMEM), MCDB media, RPMI. DMEM may also be DMEM/F12 (also referred to as DM-F12), or DMEM-high glucose (also referred to as DMEM-hg). MCDB media may be selected from any of the MCDB media available, and specifically MCDB-131. Alternatively, basal media may be selected by mixing the basal media formulations listed above in the appropriate ratio to allow for proliferation and maintenance of pluripotency of embryonic stem cells. In some embodiments, the basal media in the defined cell culture formulation of the invention is DMEM-F12. In some embodiments, the basal media in the cell culture formulation of the invention is MCDB-131.
“Feeder Cells” refers to non-pluripotent stem cells on which pluripotent stem cells are plated. The feeder cells provide sufficient soluble and insoluble factors to support for attachment, proliferation, and maintenance of pluripotency markers by pluripotent stem cells.
“Conditioned Medium” refers to a medium that is further supplemented with soluble factors derived from feeder cells.
“Extracellular Matrix” or “Defined Matrix” or “Synthetic Matrix” refers to one or more substances that can provide for attachment, proliferation, and maintenance of pluripotency markers by pluripotent stem cells. Used interchangeably herein are “IGF” and “IGF-1” which stand for Insulin-like growth factor 1. In humans, this protein is made by the liver and is responsible for much of what is attributed to the human growth hormone.
As used herein, “FGF2” and “bFGF” are used interchangeably to identify the human basic fibroblast growth factor.
Used interchangeably herein are “TGF beta”, “TGF-B”, and “TGF-β”. A TGF-β ligand may be selected from bone morphogenetic proteins (BMPs), growth and differentiation factor (GDFs), activins (Activin A, Activin AB, Activin B, Activin C), nodal and TGF-βs. A TGF-β may be selected from TGF-β1, TGF-β2, activin A, and TGF-β3.

Isolation, Expansion and Culture of Pluripotent Stem Cells

Characterization of Pluripotent Stem Cells

Pluripotent stem cells may express one or more of the stage-specific embryonic antigens (SSEA) 3 and 4, and markers detectable using antibodies designated Tra-1-60 and Tra-1-81 (Thomson et al., Science 282:1145, 1998). Differentiation of pluripotent stem cells in vitro results in the loss of SSEA-4, Tra 1-60, and Tral-81 expression (if present) and increased expression of SSEA-1. Undifferentiated pluripotent stem cells typically have alkaline phosphatase activity, which can be detected by fixing the cells with 4% paraformaldehyde, followed by developing with Vector® Red as a substrate, as described by the manufacturer (Vector Laboratories, Burlingame Calif.). Undifferentiated pluripotent stem cells also typically express OCT4 and TERT, as detected by RT-PCR.
Another desirable phenotype of propagated pluripotent stem cells is a potential to differentiate into cells of all three germinal layers: endoderm, mesoderm, and ectoderm tissues. Pluripotency of stem cells can be confirmed, for example, by injecting cells into severe combined immunodeficient (SCID) mice, fixing the teratomas that form using 4% paraformaldehyde, and then examining them histologically for evidence of cell types from the three germ layers. Alternatively, pluripotency may be determined by the creation of embryoid bodies and assessing the embryoid bodies for the presence of markers associated with the three germinal layers.
Propagated pluripotent stem cell lines may be karyotyped using a standard G-banding technique and compared to published karyotypes of the corresponding primate species. It is desirable to obtain cells that have a “normal karyotype,” which means that the cells are euploid, wherein all human chromosomes are present and not noticeably altered. Pluripotent cells may be readily expanded in culture using various feeder layers or by using matrix protein coated vessels. Alternatively, chemically defined surfaces in combination with defined media such as mTeSR®1 media (StemCell Technologies, Vancouver, Canada) may be used for routine expansion of the cells. Pluripotent cells may be readily removed from culture plates using enzymatic, mechanical or use of various calcium chelators such as EDTA (ethylenediaminetetraacetic acid). Alternatively, pluripotent cells may be expanded in suspension in the absence of any matrix proteins or a feeder layer.

Sources of Pluripotent Stem Cells

The types of pluripotent stem cells that may be used include established lines of pluripotent cells derived from tissue formed after gestation, including pre-embryonic tissue (such as, for example, a blastocyst), embryonic tissue, or fetal tissue taken any time during gestation, typically but not necessarily before approximately 10 to 12 weeks gestation. Non-limiting examples are established lines of human embryonic stem cells or human embryonic germ cells, such as, for example the human embryonic stem cell lines H1, H7, and H9 (WiCell Research Institute, Madison, Wis.). Also contemplated is use of the compositions of this disclosure during the initial establishment or stabilization of such cells, in which case the source cells would be primary pluripotent cells taken directly from the source tissues. Also suitable are cells taken from a pluripotent stem cell population already cultured in the absence of feeder cells. Also suitable are inducible pluripotent cells (IPS) or reprogrammed pluripotent cells that can be derived from adult somatic cells using forced expression of a number of pluripotent related transcription factors, such as OCT4, Nanog, Sox2, KLF4, and ZFP42 (Annu Rev Genomics Hum Genet, 2011, 12:165-185).
Human embryonic stem cells may be prepared as described by Thomson et al. (U.S. Pat. No. 5,843,780; Science, 1998; 282:1145-1147; Curr Top Dev Biol, 1998; 38:133-165; 1995, Proc Natl Acad Sci USA 92:7844-7848).
Characteristics of pluripotent stem cells are well known to those skilled in the art, and additional characteristics of pluripotent stem cells continue to be identified. Pluripotent stem cell markers include, for example, the expression of one or more of the following: ABCG2, cripto, FOXD3, CONNEXIN43, CONNEXIN45, OCT4, SOX2, NANOG, hTERT, UTF1, ZFP42, SSEA-3, SSEA-4, Tra 1-60, Tra 1-81.
Differentiation markers typically present in cultures of embryonic stem cells include for example, AFP, FOXA2, SOX17, T(BRY), and MIXL1.
In an embodiment of the present invention, human pluripotent stem cells are cultured in a defined media comprising ascorbic acid, IGF, insulin, bFGF, TGF-B ligand, and fatty-acid free albumin to sustain proliferation of the pluripotent stem cells while maintaining pluripotency and karyotypic stability of the expanded cells for at least 10 passages.
An embodiment of the present invention is an in vitro cell population wherein greater than 50% of the cell population is positive for protein expression of OCT4, SOX2, NANOG, and FOXA2 positive but low protein expression of SSEA-4 and ZFP42.
Another aspect of the present invention describes an in vitro defined cell culture formulation comprising IGF, insulin, bFGF, TGF-B, fatty-acid free albumin, and no ascorbic acid that results in a cell population wherein greater than 50% of the cell population is positive by protein staining for OCT4, SOX2, NANOG, FOXA2 and low protein expression of SSEA-4 and ZFP42.
The present invention is further illustrated, but not limited, by the following Examples, in which parts and percentages are by weight and degrees are Celsius, unless otherwise stated. It should be understood that these Examples, while indicating preferred embodiments of the invention, are given by way of illustration only. From the above discussion and these Examples, one skilled in the art can ascertain the essential characteristics of this invention, and without departing from the spirit and scope thereof, can make various changes and modifications of the invention to adapt it to various usages and conditions. Thus, various modifications of the invention in addition to those shown and described herein will be apparent to those skilled in the art from the foregoing description. Such modifications are also intended to fall within the scope of the appended claims. Publications cited throughout this document are hereby incorporated by reference in their entirety.

Example 1

Testing of Various Culture Conditions to Identify Optimal Media Components for Proliferation of Undifferentiated Embryonic Stem Cells

Cells of the human embryonic stem cell line H1 (at passage 35 to passage 40), cultured on MATRIGEL™ (Catalog No. 354230, 1:30 dilution; Corning Incorporated, Corning, N.Y.) coated dishes in mTeSR®1 media (Catalog No. 05850, Stem-Cell Technologies, Inc., Vancouver BC, Canada) and passaged using ethylenediaminetetraacetic acid (“EDTA”), were used as the starting population to test various media compositions. Cells were passaged as small colonies using 5-10 min EDTA (Catalog No. #170711E, Lonza Walkersville, Inc., Walkersville, Md.) treatment at room temperature. Cultures were routinely split in a ratio of 1:6 to 1:10 at each passage. Table I lists the initial media formulations tested for their ability to proliferate H1 cells while maintaining their undifferentiated morphology and pluripotency markers.

TABLE I

Media Formulations Evaluated

Media
Number	Basal Media	Added Components*

IH-1	MCDB-131	1 X Trace Elements C**,
	(Catalog No.	0.25 mM ascorbic acid,
	10372-019,	10 mM HEPES,
	Life Technologies	1 mM lithium chloride,
	Corporation, Carlsbad,	10 mM D-Glucose,
	CA)	1:500 X DEFINED LIPID***,
		1 X ITS-X,
		2% reagent grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		1X GlutaMAX ™
IH-2	MCDB-131	1X Trace Elements C**,
		0.25 mM ascorbic acid,
		10 mM HEPES,
		1 mM lithium chloride,
		10 mM D-Glucose,
		1:500 X DEFINED LIPID***,
		1 X ITS-X,
		2% lipid rich BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		1X GlutaMAX ™
IH-3	DMEM-F12	1 X ITS-X,
	(Catalog No.	2% reagent-grade fatty acid free BSA,
	11330-032,	1 ng/ml TGF-B1,
	Life Technologies	100 ng/ml bFGF,
	Corporation, Carlsbad,	20 ng/ml IGF-1
	CA)
IH-4	DMEM-F12	1 X Trace Elements C**,
		0.25 mM ascorbic acid,
		10 mM HEPES,
		1 mM lithium chloride,
		10 mM D-Glucose,
		1:500 X DEFINED LIPID***,
		1 X ITS-X,
		2% BSA (New Zealand origin),
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		1X GlutaMAX ™
IH-5	DMEM-F12	1 X Trace Elements C**,
		0.25 mM ascorbic acid,
		10 mM HEPES,
		1 mM Lithium chloride,
		10 mM D-Glucose,
		1:500 X DEFINED LIPID***,
		1 X ITS-X,
		2% standard grade BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		1X GlutaMAX ™
IH-6	DMEM-F12	1 X Non-essential amino acids,
		1 X ITS-X,
		20 ng/ml bFGF,
		0.1 mM β-mercaptoethanol,
		0.95 μM CHIR99021,
		0.4 μM PD0325901, and
		10 μM Y-27632

TRACE ELEMENTS C* (Catalog No. #25-023-C1, Corning Incorporated, Corning NY); HEPES (Catalog No. #15630-056-, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid; Life Technologies Corporation, Carlsbad, CA); LiCl (Catalog No. L7026, Sigma Aldrich Co LLC, Saint Louis, MO); D-glucose (Catalog No. G8769, Sigma); ascorbic acid (Catalog No. A4403, Sigma Aldrich Co. LLC, Saint Louis, MO); DEFINED LIPID*** is GIBCO ® CHEMICALLY DEFINED LIPID CONCENTRATE (Catalog No. 11905-031, Life Technologies Corporation, Carlsbad, CA); reagent-grade fatty acid free BSA (Catalog No. 7500804-, LAMPIRE Biological Laboratories, Inc., Pipersville, PA); TGF-β1 (Catalog No. 240-B-002, R & D Systems, Inc., Minneapolis, MN); bFGF (Catalog No. 233-FB-025, R & D Systems, Inc., Minneapolis, MN); IGF-1 (Catalog No. 291-G1-200, R & D Systems, Inc., Minneapolis, MN), GlutaMAX ™ (Catalog No. 35050-079-, 200 mM L-alanyl-L-glutamine dipeptide in 0.85% NaCl; Life Technologies Corporation, Carlsbad, CA); Lipid rich BSA-AlbuMAX ® (Catalog No. 11021-037, Life Technologies Corporation, Carlsbad, CA); Insulin-Transferrin-Selenium-X (“ITS-X”) (Catalog No. 51500-056, insulin (1.00 g/L), transferrin (0.55 g/L), selenium (sodium selenite 0.00067 g/L) and ethanolamine (0.20 g/L), Life Technologies Corporation, Carlsbad, CA); standard grade New Zealand BSA (Catalog No. 8631200, LAMPIRE Biological Laboratories, Inc., Pipersville, PA); standard grade BSA (Catalog No. 7500802, LAMPIRE Biological Laboratories, Inc., Pipersville, PA); NEAA (Catalog No. 11140-050-, Life Technologies Corporation, Carlsbad, CA); mercaptoethanol (Catalog No. 31350-010, Life Technologies Corporation, Carlsbad, CA); CHIR99021 (Catalog No. 04-0004, Stemgent, Inc., Cambridge, MA), PD0325901 (Catalog No. PZ0162, Sigma Aldrich Co LLC), Y27632 (Catalog No. Y0503, Sigma Aldrich Co LLC).
**Mediatech TRACE ELEMENTS C (previously sold by Mediatech, Inc. under Catalog No. 99-176) 1000× liquid contains: 1.20 mg/L AlCl₃•6H₂O, 0.17 mg/L AgNO₃, 2.55 mg/L Ba(C₂H₃O₂)², 0.12 mg/L KBr, 2.28 mg/L CdCl₂, 2.38 mg/L CoCl₂•6H₂O, 0.32 mg/L CrCl₃(anhydrous), 4.20 mg/L NaF, 0.53 mg/L GeO₂, 0.17 mg/L KI, 1.21 mg/L RbCl, and 3.22 mg/L ZrOCl₂•8H₂O.
***GIBCO ® CHEMICALLY DEFINED LIPID CONCENTRATE (“DEFINED LIPID”) Catalog No. 11905031 contains 100.0 ml/L ethyl alcohol (200 proof) and 2 mg/L Arachidonic Acid, 220 mg/L Cholesterol, 70 mg/L DL-alpha-Tocopherol Acetate, 0 mg/L Ethyl Alcohol 100%, 10 mg/L Linoleic Acid, 10 mg/L Linolenic Acid, 10 mg/L Myristic Acid, 10 mg/L Oleic Acid, 10 mg/L Palmitic Acid, 10 mg/L Palmitoleic Acid, 90000 mg/L Pluronic F-68, 10 mg/L Stearic Acid, and 2200 mg/L Tween ® 80 (polysorbate 80 sold under the trade name TWEEN 80 by ICI Americas, Inc. Bridgewater, NJ).

Use of IH-4 and IH-5 were discontinued for further evaluation because cells cultured using IH-4 and IH-5 failed to grow past passage 2. At passage 2, cells grown in IH-2 showed significant change in morphology consistent with differentiated cells and loss of packed colonies. Media IH-1, IH-3, and IH-6 were selected for further evaluation. At passage 3-5, cells cultured in IH-6 showed morphological evidence of differentiated cells at the periphery of the ES colonies (compare FIG. 1C with FIG. 1A, FIG. 1B, and FIG. 1D).
After passage 5, only IH-1 and IH-3 were further compared to the cells cultured in mTeSR®1 media (Catalog No. 05850, Stem-Cell Technologies, Inc., Vancouver BC, Canada). At passages 5 to 18 samples were collected from IH-1, IH-3, and mTeSR®1 cultures and evaluated by FACS, PCR, karyotype analysis (G-banding or FISH), and immune fluorescence staining. The results from FISH analysis are shown in Table II. These results show that H1 cells cultured in IH-1 media or IH-3 media showed normal karyotype, whereas cells cultured in mTeSR®1 media displayed abnormal trisomy 12 at passage 10 and 18.

TABLE II

Results of FISH Analysis of Chromosome 12 and
Chromosome 17 by CellLine Genetics (Madison, WI)

Media	P5	P10	P18

IH-1	Normal	Normal	Normal
IH-3	Normal	Normal	Normal
mTeSR ®
1	Normal	14% Trisomy 12,	14% Trisomy 12,
		normal 17	normal 17

Furthermore, similar to cells grown in mTeSR®1 media, cells passaged continuously in IH-1 media maintained characteristic ES colony morphology with very few differentiated cells surrounding the colonies. However, cells grown in IH-3 media started to lose the characteristic ES colony morphology beyond passage 10 (See FIG. 1A, FIG. 2A, and FIG. 3A).
Evaluation of surface and internal markers attributed to pluripotency was used to assess the impact of the tested formulations on maintenance of pluripotency. As shown in Table III, at passage 5, cells cultured in IH-1 and IH-3 showed similar profile of surface markers as cultures expanded in mTeSR®1 media. However, by passage 10, H1 cells cultured in IH-3 media showed a significant drop in expression of SSEA-4 and a modest drop in expression of TRA1-60 and 1-81. H1 cells cultured in IH-1 media for 10 passages maintained similar expression pattern to those cultured in mTeSR®1 media.

TABLE III

FACS Results at Passage 5 and Passage 10 for Surface Markers
Related to the Pluripotency State of the Cells

	% CD9	% SSEA-4	% TRA 1-60	% TRA 1-81

P5

IH-1	80	98	50	54
IH-3	83	87	39	50
mTeSR ®1	60	99	56	63

P10

IH-1	83	95	55	44
IH-3	93	15.7	42	31
mTeSR ®1	58	97	55	62

Surprisingly, similar to H1 cells cultured in mTeSR®1 and IH-1 media, H1 cells cultured in IH-3 media maintained strong expression of OCT4 and SOX2 markers at passage 11 (Table IV). This was despite a very low expression level of SSEA-4 for H1 cells cultured in IH-3 media.

TABLE IV

Internal and surface markers of cells cultured for
11 passages in IH-1, IH-3 and mTeSR ®1 media

		% Sox2	% SSEA-4	% Oct3/4

IH-1	97	97	92
IH-3	98	4.2	96
mTeSR ®1	98	98	92

As shown in FIG. 4, mRNA expression of core pluripotency markers, such as Nanog (FIG. 4D), OCT4 (FIG. 4C), SOX2 (FIG. 4B), and ZPF42 (FIG. 4A) were maintained through passage 5 for H1 cells cultured in IH-1, and IH-3 media to the same level as H1 cells cultured in mTeSR®1. However, by passages 10 to 18 there was a significant decrease in expression of ZFP42 while expression of OCT4, Nanog, and SOX2 were not significantly changed for cells grown in IH-3 media as compared to H1 cells cultured in IH-1 or mTeSR®1 media (See FIG. 5A and FIG. 6A). Furthermore, FACS analysis of H1 cells cultured in IH-3 media for 18 passages showed >97% of cells were OCT4+(FIG. 7C), SOX2+(FIG. 7F), and KI-67+(FIG. 7B). Approximately 1% of the cells were SOX17+(FIG. 7D) and −85% of the cells were FOXA2+(FIG. 7E). FIG. 8A to FIG. 8F show images of immunofluorescence staining of H1 cells cultured in IH-3 media for 18 passages. These images illustrate that a significant number of OCT4 and SOX2 positive cells were also FOXA2+. H1 cells cultured in IH3 media had acquired a phenotype where at least 70% of the cells were OCT4+NANOG+SOX2+KI-67+ZFP42- and FOXA2+. This represents a population of cells not yet described in the art.

Example 2

Culturing of H1 Cells in 111-3 Media Spiked with Ascorbic Acid Restores Major Features of Undifferentiated Embryonic Stem Cells

In order to identify the cause for the drop in SSEA-4 and ZPF42 for H1 cells cultured in IH-3 vs. those cultured in IH-1 and mTeSR®1 media, a gap analysis was conducted to identify the major reagents present in mTeSR®1 and IH-1 but absent in IH-3 media. IH-3 media was supplemented with TRACE ELEMENTS C Mediatech, Manassas, Va.), ascorbic acid, lithium chloride, or DEFINED LIPID (Invitrogen) as indicated in Table V.

TABLE V

Modifications to IH-3 Media

	Media	Additions to IH-3 Media

	IH-3-1	1x TRACE ELEMENTS C
	IH-3-2	0.25 mM ascorbic acid
	IH-3-3	1 mM lithium chloride
	IH-3-4	1:500 X DEFINED LIPID

H1 cells cultured for 14 passages in IH-3 were subsequently cultured in the above media formulations and compared to cells cultured in IH-3 media. At various passages, H1 cells cultured using various media formulations were assayed for pluripotency markers. As shown Table VI, following five additional passages, H1 cells cultured in IH-3-2 (IH-3 supplemented with ascorbic acid) media recovered a small percentage of their SSEA-4 expression as compared to cells cultured in the other tested media.

TABLE VI

FACS Results at Five Passages Beyond
Passage 15 for Surface Markers Related to
the Pluripotency State of the H1 Cells.

		CD9	SSEA-4

mTeSR ®1	26	96.9
IH-1	82.9	96.9
IH-3	89.7	0.8
IH-3-1	90.4	0.9
IH-3-2	91.6	4.2
IH-3-3	87.6	0.7
IH-3-4	88.8	0.6

As shown in FIG. 9D, H1 cells cultured in IH-3-2 media retained typical embryonic stem cell morphology similar to cells cultured in mTeSR®1 (FIG. 9A) media. However, H1 cells cultured in IH-3, IH-3-1, IH-3-3, and IH-3-4 showed loose colony morphology (See FIG. 9B, FIG. 9C, and FIG. 9F). PCR analysis of cells cultured in the above media formulations further confirmed that H1 cells cultured in IH-3-2 media regained some of the expression of ZFP42 and down regulated expression of FOXA2 (see FIG. 10A to FIG. 10E). The above data shows that presence of ascorbic acid is required to maintain pluripotency of ES cells along with their characteristic colony/cell morphology and low expression of differentiation markers. Based on this data, subsequent cultures of H1 cells in IH-3 media were further supplemented with 0.25 mM ascorbic acid.
Cells cultured in IH-3-2 recovered some of the characteristic colony morphology of ES cells whereas cells cultured in other IH media formulations displayed a looser morphology.

Example 3

Long-Term Cultures of H1 Cells in IH-3 and IH-1 Media Maintain Pluripotency and Stable Karyotype

Cells of the human embryonic stem cells line H1 (passage 35 to passage 40), cultured on MATRIGEL™ (1:30 dilution) coated dishes in mTeSR®1 media and passaged using EDTA, as described in Example 1, were used as the starting population to evaluate long-term cultures using IH-1, IH-3-2, IH-3RT and mTeSR®1 media. Cells were passaged as small colonies using 5-10 minute EDTA treatment at room temperature. The components of the tested media are listed in Table VII.

TABLE VII

Ingredients used in IH-1, IH-3-2, and IH-3RT media formulations.

Media number	Basal Media	Added components*

IH-1	MCDB-131	1X TRACE ELEMENTS C,
		0.25 mM ascorbic acid,
		10 mM HEPES,
		1 mM lithium chloride,
		10 mM D-Glucose,
		1:500 X DEFINED LIPID,
		1 X ITS-X,
		2% reagent grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		1X GlutaMAX ™
IH-3-2	DMEM-F12	1 X ITS-X,
		2% reagent-grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		20 ng/ml IGF-1,
		0.25 mM ascorbic acid
IH-3RT	DMEM-F12	2% reagent-grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		20 ng/ml IGF-1,
		0.25 mM ascorbic acid,
		5.5 μg/ml Recombinant Human Transferrin
		(Catalog No. 9701-10, EMD Millipore
		Corporation, Billerica, MA),
		10 μg/ml insulin (Life Technologies
		Corporation, Carlsbad, CA),
		0.0067 μg/ml sodium selenite (Life
		Technologies Corporation, Carlsbad, CA)

As seen in FIG. 11A to FIG. 11D, H1 cells cultured for 20 passages in IH-1, IH-3-2, and IH-3RT retained typical ES morphology. The results of PCR analysis of H1 cells cultured for 15 passages in IH-1, IH-3-2, and IH-3RT are shown in FIG. 12A to FIG. 12F. The results of PCR analysis of H1 cells cultured for 20 passages in IH-1, IH-3-2, and IH-3RT are shown in FIG. 13A to FIG. 13F. These analyses confirmed that, similar to H1 cells cultured in mTeSR®1 media, cells cultured for 15 or 20 passages in IH-1, IH-3-2, and IH-3RT (recombinant human transferrin) media retained all core pluripotency markers while showing very low expression of FOXA2 and AFP. FACS analysis at Passage 15 and Passage 20 also confirmed expression of surface markers related to pluripotent cells to the same levels as H1 cells cultured in mTeSR®1 media (See Table VIII).

TABLE VIII

FACS Results for Cells Tested at Passage 15 and Passage20 for
Surface Markers Related to the Pluripotency State of the Cells

	% CD9	% SSEA-4	% TRA 1-60	% TRA 1-81

P15

IH-1	93	99	59	59
IH-3-2	72	99	55	52
IH-3RT	65	99	50	48
mTeSR ®1	63	99	49	49

P20

IH-1	91	96	52	54
IH-3-2	91	99	49	53
mTeSR ®1	66	97	57	63

H1 cells cultured continuously in IH-1, IH-3-2, and IH-3RT showed normal karyotype as measured by G-banding and FISH analysis. However, H1 cells cultured for 10 to 20 passages in mTeSR®1 showed abnormal chromosomal counts (See Table IX).

TABLE IX

FISH and G-banding Analysis of H1 Cells Cultured in IH-1, IH-3,
IH-3RT, and mTeSR ®1.

Media	P10 (G-banding and FISH)	P15 (FISH)	P20 (FISH)

IH-1	46 XY, Normal 12 and 17	Normal	Normal
	chromosomes
IH-3-2	46 XY, Normal 12 and 17	Normal	Normal
	chromosomes
IH-3RT	46 XY, Normal 12 and 17	Normal	ND
	chromosomes
mTeSR ®
1	48, XY, +12, +14[2], /46	11% Trisomy	20% Trisomy
	XY[18]- 20% trisomy 12	12, normal 17	12, normal 17
	by FISH

Example 4

Equivalent Proliferation Rate for H1 Cells Cultured in and mTeSR®1 Media

In order to compare the proliferation rate of cells cultured in previously tested media, H1 cells cultured in and mTeSR®1 media were released by using TrypLE (Invitrogen) and seeded at a density of 5×10⁵cells per 10 cm MATRIGEL™-coated dishes. In order to reduce apoptosis of single cells and enhance attachment, released cells were pretreated with 10 μM Rock inhibitor (Sigma). Media was changed daily until three days post-seeding. On day 3, cells were released as single cells and counted using a hemocytometer. As shown in Table X, cells cultured in all three media formulations showed equivalent doubling times.

TABLE X

Doubling Times of H1 Cells Cultured in mTeSR ®1, IH-1,
and IH-3-2 Media Formulations.

	mTeSR ®1	IH-1	IH-3-2

0 h	0.5 × 10⁶cells	0.5 × 10⁶cells	0.5 × 10⁶cells
72 h	6.7 × 10⁶cells	4.2 × 10⁶cells	6.8 × 10⁶cells
Cell Doubling Time	19.23 h	23.45 h	19.12 h

Example 5

High Quality Fatty-Acid Free BSA Allows for Expansion of Pluripotent Cells

Cells of the human embryonic stem cells line H1 (passage 35 to passage 40), cultured on MATRIGEL™ (1:30 dilution) coated dishes in mTeSR®1 media and passaged using EDTA, were used as the starting population to evaluate short-term cultures using media supplemented with either 2% Sigma BSA (catalog No. A2153; Lot: 061M1804V, Sigma Aldrich Co LLC, Saint Louis, Mo.) or fatty-acid free BSA (Catalog No. 7500804; Lot: 11G54001, LAMPIRE Biological Laboratories, Inc., Pipersville, Pa.). Cells were passaged as small colonies using 5-10 minute EDTA treatment at room temperature. FIG. 14A and FIG. 14B depict phase-contrast images of H1 cells cultured for 4 days in media formulations containing Sigma BSA (FIG. 14A) or fatty acid free BSA (FIG. 14B). FIG. 15A and FIG. 15B depict phase-contrast images of H1 cells cultured for three passages in media formulations containing Sigma BSA (FIG. 15A) or fatty acid free BSA (FIG. 15B). As seen in FIG. 14A, as early as day 4 following seeding, there was morphological evidence of differentiated cells in cultures using Sigma BSA. However, there was no gross differentiated cell morphology evident in cultures treated with fatty acid-free BSA (see FIG. 14B)). The same trend was noted at passage 3, there was morphological evidence of differentiated cells in cultures using Sigma BSA (see FIG. 15A), while there was no gross differentiated cell morphology evident in cells cultured in media comprising fatty acid-free BSA (see FIG. 15B). Furthermore, there was a significant drop in confluency of cells cultured in media comprising Sigma BSA as compared to cells cultured in media comprising reagent grade fatty-acid BSA (compare FIG. 15A and FIG. 15B).
Data from real-time PCR analyses of the expression of AFP (FIG. 16A), MIXL1 (FIG. 16B), and T (BRY) (FIG. 16C) in cells of the human embryonic stem cell line H1 cultured for three passages in media formulations containing Sigma BSA or fatty acid free BSA are shown in FIGS. 16A, 16B, and 16C. PCR data at passage 3 clearly showed significant upregulation of markers associated with a differentiated cell for cells cultured in media comprising Sigma BSA. This data clearly demonstrates that use of fatty-acid-free BSA is critical in the maintenance of pluripotency, colony morphology, and proliferation of cells.

Example 6

Pluripotent Stem Cells can be Propagated and Maintain Pluripotency in 111-3 Media Using a Wide Range of Fatty Acid Free BSA and bFGF Concentrations

Cells of the human embryonic stem cells line H1 (passage 35 to passage 40), cultured on MATRIGEL™ (1:30 dilution) coated dishes in mTeSR®1 media and passaged using EDTA, were used as the starting population to evaluate short and long-term cultures using IH-3 media supplemented as indicated in Table XI.

TABLE XI

Ingredients used in IH-3 media supplemented with
varying doses of BSA and bFGF

Media
number	Basal Media	Added components*

IH-3-2	DMEM-F12	1X ITS-X,
		2% reagent-grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		20 ng/ml IGF-1,
		0.25 mM ascorbic acid
IH-3P-2	DMEM-F12	1X ITS-X,
		2% reagent-grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		50 ng/ml bFGF,
		20 ng/ml IGF-1,
		0.25 mM ascorbic acid
IH-3P-3	DMEM-F12	1X ITS-X,
		1% reagent-grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		20 ng/ml IGF-1,
		0.25 mM ascorbic acid
IH-3P-4	DMEM-F12	1X ITS-X,
		0.5% reagent-grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		20 ng/ml IGF-1,
		0.25 mM ascorbic acid
IH-3P-5	DMEM-F12	1X ITS-X,
		0% reagent-grade fatty acid free BSA,
		1 ng/ml TGF-B1,
		100 ng/ml bFGF,
		20 ng/ml IGF-1,
		0.25 mM ascorbic acid

At passage 10, cells were evaluated morphologically by PCR for pluripotency and differentiation-associated genes. Furthermore, cells were evaluated for karyotypic stability using FISH analysis for chromosomes 12 and 17. FIG. 17A to FIG. 17D show data from real-time PCR analyses of the expression of SOX2 (FIG. 17A), POU5F1 (FIG. 17B), NANOG (FIG. 17C), and FOXA2 (FIG. 17C) in cells of the human embryonic stem cell line H1 cultured for ten passages in media formulations listed in Table XI. As shown in these figures, all of the above formulations retained strong expression of pluripotency markers relative to cells grown in mTeSR®1 media. However, cells grown in 0-0.5% BSA showed higher expression of FOXA2 indicating a higher level of spontaneous differentiation in these cultures as compared to the other tested formulations. FIG. 18A to FIG. 18E depict phase-contrast images of H1 cells cultured for 10 passages in IH-3-2 (FIG. 18A), IH-3P-2 (FIG. 18B), IH-3P-3 (FIG. 18C), IH-3P-4 (FIG. 18D), and IH-3P-5 (FIG. 18E) media formulations listed in Table XI. As indicated in these figures, all formulations tested in this example allowed for formation of ES colonies with minimal evidence of gross differentiated morphology.

TABLE XII

FISH analysis of chromosome 12 and 17
analyzed by Cell Line Genetics

	Media	P10

	IH-3-2	Normal
	IH-3P-2	Normal
	IH-3P-3	Normal
	IH-3P-4	Normal
	IH-3P-5	Normal

As seen in Table XII, H1 cells cultured for ten passages in media formulations listed in Table XI retained normal counts for chromosome 12 and 17 as measured by FISH analysis. The above data indicates that defined media consisting of DMEM/F12 basal media supplemented with ITS-X, reagent-grade fatty acid-free BSA, TGF-B1, IGF-1, and ascorbic acid allows for expansion of pluripotent cells while maintaining pluripotency of the cells when using a wide range of concentrations of fatty acid—free BSA and bFGF.

Claims

What is claimed is:

1. A defined cell culture formulation for the culture, maintenance, and expansion of pluripotent stem cells, wherein the defined cell culture formulation comprises basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, and ascorbic acid; and wherein culturing stem cells in the defined cell culture formulation maintains the pluripotency and karyotypic stability of the cells for at least 10 passages.

2. The defined cell culture formulation of claim 1, wherein the cell culture formulation comprises DMEM-F12.

3. The defined cell culture formulation of claim 1, wherein the cell culture formulation further comprises insulin growth factor 1 (IGF-1).

4. The defined culture formulation of claim 3, wherein the cell culture formulation comprises DMEM-F12.

5. The defined cell culture formulation of claim 1, wherein the cell culture formulation further comprises Trace Elements C, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid, lithium chloride, glucose, Defined Lipids, and L-alanyl-L-glutamine dipeptide.

6. The defined cell culture formulation of claim 1, wherein the cell culture formulation comprises MCDB-131.

7. The defined cell culture formulation of claim 1, wherein ITS-X provides the insulin, transferrin, and selenium.

8. The defined cell culture formulation of claim 1, wherein the fatty acid free albumin is reagent grade.

9. The defined cell culture formulation of claim 1, wherein the TGF-β ligand is TGF-β1.

10. A defined cell culture formulation consisting essentially of DMEM-F12 basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, and IGF-1.

11. The defined cell culture formulation of claim 10, wherein the formulation consists of DMEM-F12 basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, and IGF-1.

12. The defined culture formulation of claim 11, wherein the formulation is further supplemented with ascorbic acid.

13. A defined cell culture formulation consisting essentially of DMEM-F12 basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, IGF-1, and ascorbic acid.

14. The defined cell culture formulation of claim 12, wherein the formulation consists of DMEM-F12 basal medium, insulin, transferrin, selenium, fatty-acid free albumin, a TGF-β ligand, bFGF, IGF-1, and ascorbic acid.

15. A defined cell culture formulation consisting essentially of MCDB-131, Trace Elements C, ascorbic acid, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid, lithium chloride, glucose, defined lipids, insulin, transferrin, selenium, fatty acid free albumin, a TGF-β ligand, bFGF, and L-alanyl-L-glutamine dipeptide.

16. The defined cell culture formulation of claim 15, wherein the formulation consists of MCDB-131, Trace Elements C, ascorbic acid, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid, lithium chloride, glucose, defined lipids, insulin, transferrin, selenium, fatty acid free albumin, a TGF-β ligand, bFGF, and L-alanyl-L-glutamine dipeptide.