US20140134620A1 - Optical measurement device for reaction vessel and method therefor - Google Patents

Optical measurement device for reaction vessel and method therefor Download PDF

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US20140134620A1
US20140134620A1 US14/117,785 US201214117785A US2014134620A1 US 20140134620 A1 US20140134620 A1 US 20140134620A1 US 201214117785 A US201214117785 A US 201214117785A US 2014134620 A1 US2014134620 A1 US 2014134620A1
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reaction vessels
light guide
measurement device
measuring
reaction
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Hideji Tajima
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Universal Bio Research Co Ltd
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Universal Bio Research Co Ltd
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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/6428—Measuring fluorescence of fluorescent products of reactions or of fluorochrome labelled reactive substances, e.g. measuring quenching effects, using measuring "optrodes"
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/75—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated
    • G01N21/77—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator
    • G01N21/78—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated by observing the effect on a chemical indicator producing a change of colour
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
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    • G01N21/17—Systems in which incident light is modified in accordance with the properties of the material investigated
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    • G01N21/76—Chemiluminescence; Bioluminescence
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    • G01N35/04—Details of the conveyor system
    • G—PHYSICS
    • G02—OPTICS
    • G02B—OPTICAL ELEMENTS, SYSTEMS OR APPARATUS
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    • G02B21/0004—Microscopes specially adapted for specific applications
    • G02B21/002—Scanning microscopes
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    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N2021/6484—Optical fibres
    • G—PHYSICS
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    • G01N35/02—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor using a plurality of sample containers moved by a conveyor system past one or more treatment or analysis stations
    • G01N35/04—Details of the conveyor system
    • G01N2035/0401—Sample carriers, cuvettes or reaction vessels
    • G01N2035/0403—Sample carriers with closing or sealing means
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/01—Arrangements or apparatus for facilitating the optical investigation
    • G01N21/11—Filling or emptying of cuvettes
    • G—PHYSICS
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    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
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    • G01N21/17—Systems in which incident light is modified in accordance with the properties of the material investigated
    • G01N21/25—Colour; Spectral properties, i.e. comparison of effect of material on the light at two or more different wavelengths or wavelength bands
    • G01N21/27—Colour; Spectral properties, i.e. comparison of effect of material on the light at two or more different wavelengths or wavelength bands using photo-electric detection ; circuits for computing concentration
    • G01N21/274—Calibration, base line adjustment, drift correction
    • G01N21/276—Calibration, base line adjustment, drift correction with alternation of sample and standard in optical path
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63—Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64—Fluorescence; Phosphorescence
    • G01N21/645—Specially adapted constructive features of fluorimeters
    • G01N21/6456—Spatial resolved fluorescence measurements; Imaging
    • G—PHYSICS
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    • G01N2201/00—Features of devices classified in G01N21/00
    • G01N2201/08—Optical fibres; light guides
    • G01N2201/0846—Fibre interface with sample, e.g. for spatial resolution
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2201/00—Features of devices classified in G01N21/00
    • G01N2201/08—Optical fibres; light guides
    • G01N2201/0853—Movable fibre optical member, e.g. for scanning or selecting
    • G—PHYSICS
    • G01—MEASURING; TESTING
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    • G01N35/02—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor using a plurality of sample containers moved by a conveyor system past one or more treatment or analysis stations
    • G01N35/026—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor using a plurality of sample containers moved by a conveyor system past one or more treatment or analysis stations having blocks or racks of reaction cells or cuvettes
    • G—PHYSICS
    • G01—MEASURING; TESTING
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    • G01N35/02—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor using a plurality of sample containers moved by a conveyor system past one or more treatment or analysis stations
    • G01N35/028—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor using a plurality of sample containers moved by a conveyor system past one or more treatment or analysis stations having reaction cells in the form of microtitration plates
    • G—PHYSICS
    • G01—MEASURING; TESTING
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    • G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
    • G01N35/10—Devices for transferring samples or any liquids to, in, or from, the analysis apparatus, e.g. suction devices, injection devices
    • G01N35/1002—Reagent dispensers
    • G—PHYSICS
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    • G01N35/10—Devices for transferring samples or any liquids to, in, or from, the analysis apparatus, e.g. suction devices, injection devices
    • G01N35/1065—Multiple transfer devices

Definitions

  • the present invention relates to an optical measurement device for a reaction vessel, and a method therefor.
  • nucleic acids DNA, RNA, and the like
  • fragments thereof oligonucleotides, nucleotides, and the like
  • it becomes necessary to perform the amplification such that the ratio of the relative amounts of the respective nucleic acids can be known. Consequently, by using the real-time PCR method, and by using a device provided with a thermal cycler and a fluorescence spectrophotometer, analysis by electrophoresis is made unnecessary as a result of the generation process of the DNA amplification products in PCR being detected and analyzed in real time.
  • the SPIA Single Primer Isothermal Amplification
  • the linear DNA amplification method resulting from an isothermal reaction utilizing DNA/RNA chimera primer, DNA polymerase, and RNaseH has become used.
  • the target nucleic acid is separated and extracted from the sample by using a filter by means of a manual method, by using magnetic particles and adsorption on an inner wall of a vessel or a pipette tip by means of a magnetic field, or by using a centrifuge.
  • the separated and extracted target compound is transferred and introduced into a reaction vessel together with a reaction solution by a manual method and the like, and upon sealing of the reaction vessel using a manual method and the like, at the time reactions are performed using a temperature control device for reactions, optical measurements are performed with respect to the reaction vessel using a light measuring device (Patent Document 1).
  • the measurements are performed by successively moving a single measuring device to the respective reaction vessels by a manual method, or the measurements are performed by providing a measuring device to each of the respective reaction vessels beforehand.
  • the detection module since the detection module itself is moved in a state in which it is supported by the thermal cycler, a load that accompanies the acceleration from the movement is imparted on the detection module, which has precision optical system elements and electronic circuits such as a photomultiplier tube, thus becoming the cause of noise or breakdowns of the measurement device, and furthermore, there is a concern of the device lifetime being shortened.
  • the detection module is supported by the microplate, or is supported by a lid body sealing the respective wells of the microplate and only moves in a horizontal direction, a fixed spacing between the respective wells and the measuring end of the measurement device is necessary. Therefore, since attenuation from the scattering of light, and the leakage or entry of light with respect to the adjacent wells cannot be completely blocked and prevented, there is a concern of a measurement with a high accuracy not being able to be performed.
  • the detection module divides the light path using a half mirror at the time light from the vessels is received or is irradiated, there is a need to take a long light path length within the measurement device, and it has a problem in that there is a concern of the device scale becoming large.
  • the detection module is one that moves such that it passes the respective wells that are arranged on the microplate and the number of wells becomes large, there is a concern of the processing time becoming long due to the movement distance being long, and in addition, there is also a concern of the problems of the measurement device mentioned above occurring.
  • a first object thereof is in providing an optical measurement device for a reaction vessel, and a method thereof that, with regard to the optical state within a reaction vessel with respect to nucleic acids and the like, makes rapid and efficient measurements with a high accuracy and reliability possible.
  • a second object is in providing an optical measurement device for a reaction vessel, and a method thereof that, by simplifying the construction of the optical system and performing measurements using a small number of measurement devices with respect to a plurality of reaction vessels, prevents the expansion of the device scale and increases in the complexity of the device construction, and can be inexpensively manufactured and utilized.
  • a third object is in providing an optical measurement device for a reaction vessel, and a method thereof that, by consistently automating in parallel the optical measurements with respect to the plurality of reaction vessels, in which reactions such as amplification of nucleic acids are performed, and the associated processing therein, processing with a high reliability can be performed by preventing with certainty contaminations due to the entry of contaminants into the plurality of reaction vessels from the exterior, or liquid leakage from the plurality of reaction vessels, and the contamination of light.
  • a first aspect of the invention is an optical measurement device for a reaction vessel comprising: a vessel group in which two or more reaction vessels are arranged; a light guide stage having two or more linking portions to which the front ends of one or two or more light guide portions, which have a flexibility, that are directly or indirectly linkable with the respective reaction vessels and optically connect with the interior of the linked reaction vessels, are provided; a connecting end arranging body that has an arranging surface that arranges and supports along a predetermined path two or more connecting ends, to which back ends of the light guide portions, in which the front ends thereof are provided to the linking portions, are provided, the connecting ends are provided corresponding to the respective linking portions; a measurement device provided approaching or making contact with the arranging surface that has one or two or more measuring ends that are successively optically connectable with the respective connecting ends along the predetermined path, and in which light based on an optical state within the reaction vessels is receivable by means of optical connections between the connecting ends and the measuring ends; and a light guide switching mechanism that relatively moves the respective connecting ends arranged
  • the vessel group prefferably has in addition to the reaction vessels, two or more liquid housing parts that house liquids such as samples, reagents, and the like. Furthermore, the vessel group includes a microplate in which wells representing a plurality of liquid housing parts are arranged in a matrix form or a column (row) form, or a cartridge form vessel in which wells representing a plurality of liquid housing parts are arranged in a row form.
  • the vessel group is provided with two or more liquid housing parts housing for example; a sample, a magnetic particle suspension in which magnetic particles that are able to capture the nucleic acids or the fragments thereof, which represent the amplification subject, are suspended, a solution for separating and extracting used for the separation and the extraction of the amplification subject, and an amplification solution used in nucleic acid amplification.
  • the “amplification solution” represents, in a case where amplification is performed by the PCR method for example, a template DNA solution which is the amplification subject, a primer solution, a DNA polymerase solution, a nucleotide solution, a reaction buffer solution, and the like.
  • amplification is performed by the SPIA method
  • it represents a DNA/RNA chimera primer solution, a DNA polymerase solution, an RNaseH solution, and the like.
  • methods for performing real-time PCR using fluorescent reagents containing a fluorescent compound include the intercalation method, the hybridization method, and the LUX method.
  • a fluorescent compound such as SYBR (registered trademark) GREEN I or ethidium bromide, enters into double-stranded DNA at the time of the elongation reaction, and is a method in which the DNA amount is measured by irradiating an excitation light and utilizing the fluorescent light-emitting characteristics. Therefore, at the very least, the fluorescent material and a quencher that suppresses the light emission of the fluorescent material must be contained within the amplification solution.
  • the “hybridization method” is a method that detects only a target PCR product by using a DNA probe labeled with a fluorescent material in addition to a PCR primer.
  • the “LUX method” is one that utilizes a property in which the fluorescent light signal of the fluorescent compound labeling the oligonucleotide is affected by the shape (such as a sequence, a single-strand, or a double-strand) of the oligonucleotide thereof.
  • a PCR primer (LUX primer) that is labeled with one type of a fluorescent compound and a contrastingly unlabeled PCR primer are used to perform real-time PCR.
  • the LUX primer thereof is labeled with a fluorescent compound in the vicinity of the 3′-terminus, and is designed such that it takes a hairpin structure in the interval between the 5′-terminus.
  • the quenching effect is resolved, and the fluorescent light signal becomes increased. By measuring this signal increase, the amount of the PCR product can be measured.
  • Examples of the material of the vessels which includes the reaction vessels, the lid, and the like, include resins such as polyethylene, polypropylene, polystyrene and acrylic, glass, metals, and metal compounds.
  • the size of the vessels is, in addition to several ⁇ L to several 100 ⁇ L of liquid being storable, a size in which the ends of the dispensing tips are insertable for example. In the case of a cylindrical shape, the diameter of the size of one vessel is several mm to several 10 mm, and the depth is several mm to several 10 mm for example.
  • the interior of the reaction vessels prefferably be temperature controllable by a temperature controller.
  • the “temperature controller” has a temperature source that is able to lower the temperature within the reaction vessels, which house the liquids that become subjected to temperature control, based on a signal from the exterior for example.
  • the temperature source is one in which, for example, a Peltier element, a heater, a cooling device, and the like is provided on a block-shaped member.
  • the temperature controller is preferably a thermal cycler using a Peltier element.
  • temperature control it is preferable for temperature control to be achieved by providing a block for temperature control as a temperature source to the vessel group or on the stage, in which temperature is raised and lowered by means of a Peltier element, that makes contact with or is adjacent to a portion (a lower side wall section for example) or the entirety of the reaction vessel. Furthermore, it is also possible to perform temperature control of an isothermal amplification by means of the LAMP method.
  • Temperature control represents, with respect to a liquid or a vessel that becomes the subject thereof, the maintaining of one or two or more set predetermined temperatures for set time periods, according to a specified sequence, and the execution at a specified frequency.
  • the instructions to the temperature controller are carried out by sending a corresponding signal based on a program.
  • the “predetermined temperature” is a target temperature that an object, such as a liquid that becomes the subject, is to reach.
  • the predetermined temperature that is set is a temperature cycle performed in the PCR method. That is to say, it represents temperatures that are respectively necessary for the denaturation, the annealing or the hybridization, and the elongation of DNA of approximately 94° C. a temperature in the interval from 50° C. to 60° C., and a temperature of approximately 72° C. for example.
  • the SPIA method (trademark) it becomes set at a fixed temperature, such as 55° C. for example.
  • the predetermined temperature includes a temperature for transition acceleration that shortens the transition time and keeps the single cycle time within a predetermined cycle time as a result of, in the case of a transition from a high-temperature predetermined temperature to a low-temperature predetermined temperature, performing cooling at a temperature for transition acceleration that is lower than these predetermined temperatures by means of the temperature controller, or, at the time of a transition from a low-temperature predetermined temperature to a high-temperature predetermined temperature, by performing heating at a temperature for transition acceleration that is even higher than these predetermined temperatures for example.
  • the “predetermined time” is the time necessary for maintaining the respective temperatures, and although it depends on the type of the amplification method, the reagents and the amount of liquid used in the PCR method, and the shape, the material, the size, the thickness, and the like, of the nozzles, a single cycle is, in total, from several seconds to several 10 seconds for example, and the processing time for the PCR method as a whole is of the order of approximately several minutes to several 10 minutes for example.
  • the transition time is also included in the predetermined time.
  • the “linking portion” is a member that is able to be releasably linked with the reaction vessel directly, or indirectly via the sealing lid and the like.
  • Provided to the linking portion is the end of a light guide portion that is able to guide the light based on the optical state within the reaction vessel, by optically connecting with the interior of the reaction vessel.
  • the “linking with the reaction vessel” represents approaching or joining with the aperture, the outer wall, or the outer bottom portion of the reaction vessel or a mounted sealing lid or sleeve and the like.
  • “approaching” represents, without making contact, an approach to an extent that optical connection of the interval with the light guide portions is possible.
  • linking includes making contact, close contact, adhesion, fitting, and mounting, and at the very least represents making contact such that optical connection of the interval between the light guide portions is possible.
  • the light guide portion provided to the linking portion and the interior of the reaction vessel are optically connected.
  • An example of the linking portion is a plate-shaped section of the light guide stage, and the end of the light guide portion is a hole piercingly provided in the plate-shaped section thereof, a transparent section such as an optical fiber, or an optical system element such as a lens.
  • a flexible light guide portion is an optical fiber or an optical fiber bundle. In a case where fluorescent light is measured, it has two or more light guide portions, and a portion thereof is for irradiation, and the others are used for receiving light.
  • a case where it is directly linked with the aperture of the reaction vessel represents a case in which the interior of the reaction vessel is sealed using mineral oil and the like, and in this case, it is preferable to form the linking portion such that it is able to directly seal the reaction vessel. Furthermore, in a case where the linking is performed outside of the aperture, there is a need for the reaction vessel or the linking section thereof to have transparency.
  • the “predetermined path” represents, as a result of the measuring ends and the connecting end arranging body relatively moving, a path on a plane surface or a curved surface whereby the measuring ends are able to scan all of the connecting ends arranged therealong.
  • the path that connects all of the connecting ends represents a single or multiple line segments that do not intersect (including zigzag lines and closed straight lines), curved lines (including spirals and closed curved lines), or a path along a combination of these and the like.
  • the respective single or multiple paths are continuous, and paths along straight line segments without cusps or corners, or smooth curves that have a curvature that the measuring ends are able to follow, are preferable.
  • the linking portions and the connecting ends correspond one-to-one, a case where they correspond many-to-one, and a case where they correspond one-to-many.
  • the light guide portions it is possible for the light guide portions to be branched or joined, or a light guide portion bundle comprising a plurality of light guide portions to be branched or joined.
  • the predetermined path is determined based on the number, the shape, the arrangement, or the size of the measuring ends on the measuring device, such that smooth scanning is possible.
  • a predetermined path along a straight line in which, for the movement of the connecting ends with respect to the measuring ends, there are no sudden changes in direction, such as changes to an obtuse angle or a right angle direction with respect to the traveling direction is preferable.
  • the arrangement pattern of the linking portions is a matrix form, a column form, or a row form for example.
  • the arrangement pattern of the connecting ends is the same arrangement, or a similar arrangement that differs only in size for example, or in a case where the arrangement pattern is different, examples include the case of a circular form, other closed curved forms, a single column form, or a matrix form having a smaller number of columns or rows.
  • the predetermined path is determined such that it passes through all of the arranged connecting ends.
  • the arrangement of the connecting ends is preferably such that they are integrated with respect to the arrangement of the linking portions. “Integration” is preferably performed by means of the predetermined path (or the arrangement pattern of the connecting ends) representing a smaller region area or a smaller spacing than the region area that encloses the arrangement pattern of the linking portions on the light guide stage or the spacing between adjacent linking portions, and by making the total scanning distance short. Consequently, in a case where the speed is made the same, processing within a shorter time than a case where the linking portions directly scan the measuring ends is possible.
  • the extent of integration is preferably an extent in which the relative movement or scanning of the connecting end arranging body and the measuring device is able to complete the receiving of the light from all of the reaction vessels to be measured within the stable light receivable time for example.
  • the “stable light receivable time” represents the time in which the optical state within the reaction vessels, for which the light is receivable, is stably maintained.
  • the intercalation method or the LUX method of real-time PCR, or the TaqMan probe of the hybridization method it corresponds to the time in which the elongation reaction of the respective cycles of PCR is performed.
  • a FRET probe is used in the hybridization method, it corresponds to the time in which annealing is performed.
  • the stable light receivable time becomes several seconds or 10 seconds.
  • the fluorescent light detection amount of the initial cycles of a PCR reaction is below the detection limit, and the later cycles of the PCR reaction become a plateau state, and in order to secure quantitativeness by a strict definition, it must be within a range of the amplification curve in which an exponential PCR amplification can be observed.
  • the present invention is one in which the stable light receivable time utilizes the fact that the movement time of the measuring end between the reaction vessels can be used, and by performing the relative movement necessary for receiving the light from the respective reaction vessels within the stable light receivable time, the receiving of the light from the plurality of reaction vessels can be performed approximately in parallel by means of a single measuring device, or a sufficiently small number in comparison to the number of reaction vessels, without using complicated optical system elements and without expanding the scale of the device.
  • the “optical state” represents a state such as light emissions, colors, color changes, or light variations.
  • the light based on the optical state represents light from light emissions or light variations, or reflected light from light irradiated with respect to colors or color changes, or transmitted light, scattered light and the like.
  • the “connecting ends and the measuring ends are successively optically connected” represents that the connecting ends and the measuring ends are optically connected by becoming opposed at a close proximity. Since the amount of light received by the measuring device at the moment of connection corresponds to a maximum value, the measurement control portion specifies the data to be measured by calculating the maximum value of the amount of light.
  • the “measuring device” is one that makes fluorescence and chemiluminescence measurements possible for example, and in the former case, it has a filter for the irradiation of one or two or more types of excitation light and the receiving of fluorescent light having one or two or more types of wavelengths. It is preferable for these to be guided using an optical fiber.
  • the “measuring end” has, at the very least, an inlet for the light to be received provided to the measuring device, and in the case of a fluorescence measurement, has an outlet for the light to be irradiated. These can be provided as separate measuring ends.
  • the inlet and the outlet are respectively optically connected to a light receiving portion comprising a photoelectric element provided in the interior, and to an irradiation source. At that time, they can be respectively connected via the light guide portion for receiving light and the light guide portion for irradiation.
  • the connecting end arranging body, the measuring ends, and the measurement device are preferably provided at separated locations such that they do not directly make contact or are not in the vicinity of the reaction vessels or the stage for mounting, in which heating control or temperature control is performed.
  • the light measurement device for a reaction vessel although not explicitly specified, additionally has “a measurement control portion”.
  • the “measurement control portion” controls the measuring device and a light guide switching mechanism, comprises a computer (CPU) built into the light measurement device for a reaction vessel and a program that drives the computer, and achieves measurement control by transmitting a signal through a DA converter to the respective control portions that drive the transfer mechanisms for example.
  • CPU computer
  • a second aspect of the invention is an optical measurement device for a reaction vessel in which, at the time light is received by the measurement device, at the very least, a measurement device body excluding the measuring ends is immovably provided with respect to the light guide stage, which is provided with the reaction vessels and the linking portions linked with the same.
  • the connecting end arranging body moves with respect to the measuring ends, or the measuring ends move with respect to the connecting end arranging body, and the measurement device body may be movably provided with respect to the reaction vessels or the light guide stage until the light guide stage is linked with the reaction vessels.
  • the former case represents a case where the measurement device body is linked with the light guide stage or a case where it is linked with movements in a portion of the directions for example.
  • the latter case represents a case where the measurement device body is linked with the reaction vessels, or is fixed to the stage together with the reaction vessels.
  • the measuring ends in a case where they are present, include light guide portions, which are on the exterior of the measurement device body, up to the measuring ends.
  • a third aspect of the invention is an optical measurement device for a reaction vessel comprising a stage transfer mechanism that relatively moves the light guide stage with respect to the vessel group, such that the linking portions are simultaneously directly or indirectly linked with two or more of the reaction vessels.
  • the sealing lids that are mounted such that they cover the apertures of the reaction vessels can be pressed or shaken. That is to say, it is preferable for the measurement control portion, following indirectly linking with the linking portions via the sealing lids such that it covers the apertures of the reaction vessels, to perform control such that it presses or shakes the sealing lids. By pressing, the sealing of the reaction vessels can be performed with certainty. In addition, by shaking, the sealed state between the apertures of the reaction vessels and the sealing lids can be rapidly and easily removed and released. Therefore, a high processing efficiency and reliability can be obtained.
  • linking portions are not linked by joining, such as by directly or indirectly fitting with the apertures of the reaction vessels, but by linking with the reaction vessels by approaching the reaction vessels, it is possible to successively and smoothly repeat the linking between the linking portions and the reaction vessels, and the releasing thereof, by means of horizontal movements without performing relative movements in the vertical direction.
  • the two or more linking portions provided to the light guide stage are arranged on a linking portion arranging body that is movable in the horizontal direction with respect to the light guide stage in a state in which they are directly or indirectly simultaneously linkable with two or more reaction vessels.
  • a linking portion arranging body that is movable in the horizontal direction with respect to the light guide stage in a state in which they are directly or indirectly simultaneously linkable with two or more reaction vessels.
  • the linking between the respective linking portions and the reaction vessels is preferable for the linking between the respective linking portions and the reaction vessels to be performed within shielded regions that are mutually shielded, such as within two or more grooves or two or more regions that are mutually separated by a partition wall, to which the respective linking portions are insertable, that extend in a horizontal direction in which the linking portion arranging body thereof is movable, and are also provided to the light guide stage for each of the linking portions. Consequently, the contamination of light from other reaction vessels can be prevented with certainty.
  • the linking portions can be easily and rapidly linked with the reaction vessels by merely moving in the horizontal direction without movements of the light guide stage in the vertical direction. Therefore, by setting the speed of the linking portion arranging body such that it includes the horizontal movements of the linking portion arranging body and can be performed within the stable light receivable time, it becomes possible to receive light and perform measurements essentially in parallel with respect to an even greater number of reaction vessels by means of a single set of measurement devices.
  • a fourth aspect of the invention is an optical measurement device for a reaction vessel wherein the measurement device has: a plurality of types of specific wavelength measurement devices that are provided with one or two or more measuring ends that are optically connectable with the respective connecting ends, and are able to receive light of specific wavelengths or specific wavelength bands; and a measuring end aligning portion that aligns the plurality of measuring ends such that they are optically connectable with the respective connecting ends along the predetermined path.
  • the measurement device or the respective specific wavelength measurement devices are provided with an excitation light irradiation source that irradiates the corresponding excitation light, and a light receiving portion.
  • the measuring end is provided with an irradiation aperture that connects with the irradiation source, and a light receiving aperture that connects with the light receiving portion on the same measuring or as a separate measuring end.
  • the measuring ends are provided with a cavity, an optical element such as a lens, or a light guide portion such as an optical fiber for example.
  • the “aligning” is integrally or linkingly performed. “Integrally” represents arrangement such that the intervals between the measuring ends are mutually fixed and do not have any degrees of freedom. “Linkingly” represents arrangement such that the intervals between the measuring ends have degrees of freedom to some extent, such as in a chain. There is a case where the “aligning” is such that the respective measuring ends are lined up along the scanning direction of the predetermined path, or a direction perpendicular to the scanning direction. In the latter case, the predetermined path is such that a plurality of paths are lined up in parallel.
  • the present aspect of the invention by using a plurality of types of luminescent compounds, colored compounds, color changing compounds, or light variation compounds, and performing amplification processing in parallel under the same conditions on a plurality of types of amplification subjects in a single reaction vessel, it is possible to perform multiplex PCR amplification or multiplex real-time PCR on a plurality of types of amplification subjects by using a primer labeled with a plurality of types of luminescent compounds for example.
  • a fifth aspect of the invention is an optical measurement device for a reaction vessel wherein the vessel group is provided with sealing lids, which have transparency, that are mounted on apertures of one or two or more of the reaction vessels, and seal the reaction vessels.
  • the “sealing lid” includes, in addition to those that are inflexible and a plate form or block form, those that are a film form or a membrane form and have a flexibility.
  • the “mounting” includes fitting, threading, friction, adsorption, attachment, adhesion, and the like. In these cases, detachable mounting is preferable.
  • the respective linking portions of the light guide stage are linked at the apertures of the respective reaction vessels, it is preferable to make the linking portions or the nozzles pressable or shakable with respect to the sealing lids covering the apertures of the reaction vessels.
  • the linking portions are provided such that they downwardly protrude from the light guide stage.
  • the linking portions for example, have a shape such as a rod shape, a cylinder shape, a cone shape, and the like, and the lower end portions of the members are preferably able to make contact with the sealing lids.
  • the sealing lids singularly cover the apertures of one or two or more reaction vessels.
  • the sealing lids are moved by being mounted to the nozzles mentioned below, and cover the apertures of the reaction vessels by using the tip detaching mechanism for example.
  • one or two or more indentations for mounting that are mountable on the one or two or more nozzles are provided on the upper side of the sealing lids.
  • the one or two or more linking portions can be linked with the reaction vessels by being inserted within these indentations (which are also indentations for linking) by means of vertical direction movements of the light guide stage.
  • the optical measurement device for a reaction vessel has a transporting body that is movable with respect to the vessel group, and one or two or more grippers arranged on the transporting body according to the arrangement of the reaction vessels that, with respect to the cover plate that covers the apertures of the respective reaction vessels, and the sealing lids having mounting portions that protrude on the lower side of the cover plate excluding the center portion, in which light is able to pass through, and to which the cover plate is mountable to the reaction vessel, grips the cover plate such that the mounting portions are exposed on the lower side in a state in which they are mountable to the reaction vessels for example.
  • the sealing lid transporting body is made to be linked with the light guide stage, the device construction is simplified, and the expansion of the device scale can be prevented.
  • the linking portion can be easily linked by just horizontal direction movement between the apertures of the reaction vessels on the sealing lid without vertical direction movements of the light guide stage.
  • the horizontal direction movement of the linking portion can be performed within the stable light receivable time, it becomes possible to receive light and perform measurements essentially in parallel with respect to an even greater number of reaction vessels.
  • a sixth aspect of the invention is an optical measurement device for a reaction vessel, wherein the light guide stage is provided with a heating portion that is able to heat the sealing lids.
  • the measurement control portion after simultaneously mounting the sealing lids to the linking portions, and following control of the stage transfer mechanism such that the optical linking portions are simultaneously indirectly linked with the two or more reaction vessels, controls the heating portion such that the sealing lids are heated for example.
  • the “heating portion” has a heating function at a temperature that is set based on the magnitude of an applied electric current or by an ON/OFF control for example.
  • the heating of the sealing lids by the heating portion is performed for preventing condensation at the time of temperature control of the reaction vessels sealed by the sealing lids.
  • a seventh aspect of the invention is an optical measurement device for a reaction vessel provided with a temperature controller having a temperature source that is provided making contact with or approaching the lower side wall sections of the reaction vessels, and a heating portion provided such that it is able to make contact with or approach the upper side wall sections of the reaction vessels positioned further on an upper side than the lower side wall sections of the reaction vessels, and that has a heat source that is able to heat the upper side wall sections.
  • the “lower side wall section” represents a wall section or a portion thereof including the bottom portion that encloses a volume section, which is a portion (1% to 90% for example) of the entire volume of the reaction vessel in which a predetermined liquid amount determined beforehand is housable.
  • the lower side wall section represents the section of the wall section in which the rated liquid amount of liquid is housable for example.
  • the reaction vessels comprise wide-mouthed piping parts that are linked with the linking portions, and a narrow-mouthed piping part, it is provided on the narrow-mouthed piping part for example.
  • the “upper side wall section” represents, within the entire volume of the reaction vessel, a vessel section enclosing the remaining volume of the lower side vessel section, in which the rated liquid amount is housed, or a portion thereof.
  • the “upper side wall section” is normally preferably provided on the upper side of the reaction vessels leaving a spacing with the lower side wall section. The upper side wall section becomes closer to the aperture, the sealing lid, or the linking portion than the lower side wall section.
  • the upper side wall section is provided on the wall section of the wide-mouthed piping part for example.
  • the upper side wall section is a section that corresponds to a band shape along the circumference of the vessel wall for example.
  • the measurement control portion following controlling the stage transfer mechanism such that the linking portions are simultaneously directly or indirectly linked with the reaction vessels, controls the heating portion such that direct or indirect condensation on the linking portions is prevented.
  • “Indirectly linked” represents a case where the linking portions are linked with the reaction vessels via the sealing lids, the outer walls of the reaction vessels, and the like.
  • “Control of the heating portion” is performed according to the “temperature control” for preventing condensation.
  • the heating temperature is controlled such that it is set from several degrees (a temperature exceeding the dew point of water vapor that is necessary for preventing condensation) to several 10° C. (a temperature that is sufficiently lower than the melting point of the raw material of the reaction vessels), for example, 1° C.
  • heating is performed at a temperature that is several degrees higher than 94° C., such as 100° C.
  • heating is performed at a temperature that is several degrees higher than this for example, such as from approximately 60° C. to 70° C.
  • the heating portion performing heating directly with respect to the reaction vessels and not the linking portions or the sealing portions, thermal effects toward the optical system elements provided to the linking portion, or the measuring ends near the linking portions, are reduced or removed. Therefore, the degradation of optical system elements such as prisms, optical fibers, various lenses, such as concavoconvex lenses, ball lenses, aspheric lenses, drum lenses, and graded index rod lenses, mirrors, waveguide tubes, and the like, is prevented, and the reliability of the image that can be obtained through the optical system elements can be increased.
  • optical system elements such as prisms, optical fibers, various lenses, such as concavoconvex lenses, ball lenses, aspheric lenses, drum lenses, and graded index rod lenses, mirrors, waveguide tubes, and the like
  • the light that is generated within the reaction vessels and is outgoing in the aperture direction is focused with certainty, and can be guided by being incident to the light guide portion, such as an optical fiber.
  • reaction vessels which has a temperature source provided such that it is making contact with or approaching the lower side wall sections of the reaction vessels, and performs temperature control of the interior of the reaction vessels; and the heating portion provided such that it is making contact with or approaching the upper side wall section, which has a heat source that is able to heat the upper side wall section, configure the reaction vessel control system.
  • the reaction vessel preferably comprises a wide-mouthed piping part, and a narrow-mouthed piping part that is formed narrower than the wide-mouthed piping part and is provided on a lower side of the wide-mouthed piping part and communicated with the wide-mouthed piping part.
  • the end of the linking portion is fittable to the wide-mouthed piping part, liquids are housable in the narrow-mouthed piping part, and the lower side wall section is provided to the narrow-mouthed piping part, and the upper side wall section to the wide-mouthed piping part.
  • the contact surfaces between the linking portion and the upper side wall section of the reaction vessel, which is heated by the heating portion, or the sealing lid which makes contact therewith, to be made as small as possible. Consequently, the effects of the heating portion toward the optical system elements of the linking portions can be reduced or removed.
  • An eighth aspect of the invention is an optical measurement device for a reaction vessel, wherein the light guide stage is provided to a nozzle head having a suction-discharge mechanism that performs suction and discharge of gases, and one or two or more nozzles that detachably mount dispensing tips in which the suction and the discharge of liquids is possible by means of the suction-discharge mechanism, and has a nozzle head transfer mechanism that makes the nozzle head relatively movable between the vessel groups.
  • an extraction control part that controls the suction-discharge mechanism, the transfer mechanism, and the magnetic force part, and as the reaction solution, separates and extracts the solution of the amplification subject from the sample and houses it within the liquid housing parts as a portion of the amplification solution.
  • the “solution for separating and extracting” includes a dissolving solution that breaks down or dissolves the protein forming the cell walls and the like contained in the sample and discharges the nucleic acids or the fragments thereof to the outside of the bacteria or the cell, a buffer solution that simplifies the capture of the nucleic acids or the fragments thereof by the magnetic particles, and additionally, a solution that dissociates from the magnetic particles, the nucleic acids or the fragments of nucleic acids captured by the magnetic particles. In order to perform the separation of the nucleic acids or the fragments thereof, it is preferable to repeat the suction and the discharge of the mixed solution.
  • the “dispensing tip” comprises for example a thick diameter portion, a narrow diameter portion, and a transition portion that communicates between the thick diameter portion and the narrow diameter portion.
  • the thick diameter portion has an aperture for mounting, into which the lower end of the nozzle is inserted and the nozzle is mounted, and the narrow diameter portion has an end mouth portion in which liquids can flow in and flow out by means of the suction and discharge of gases by the suction-discharge mechanism.
  • the dispensing tip and the nozzle are manufactured from organic substances such as resins of polypropylene, polystyrene, polyester, acrylic, and the like, and inorganic substances such as glass, ceramics, metals including stainless steel, metal compounds, and semiconductors.
  • the “suction-discharge mechanism” is for example a mechanism formed by a cylinder, a piston that slides within the cylinder, a nut portion joined to the piston, a ball screw on which the nut portion is threaded, and a motor that rotatingly drives the ball screw in both forward and reverse directions.
  • the stage transfer mechanism at least partly utilizes the nozzle head transfer mechanism. It is preferable for the nozzle transfer mechanism, which moves the nozzles themselves in the Z axis direction, to also at least partly utilize the nozzle head transfer mechanism, and for the stage transfer mechanism and the nozzle transfer mechanism to be independently movable with respect to the Z axis direction movement.
  • a ninth aspect of the invention is an optical measurement device for a reaction vessel, wherein the nozzle is such that a sealing lid is retainable by mounting, and by detaching the sealing lid, the sealing lid is mountable on an aperture of the reaction vessel.
  • the detaching of the sealing lid can be combined with the tip detaching mechanism that detaches from the nozzle the dispensing tip mounted on the nozzle.
  • the “sealing lid” has a sealing portion that is mountable on the aperture of the reaction vessel, and an indentation for linking that is mountable on the nozzle.
  • the linking portion indirectly linking with the reaction vessel by being mounted on the sealing lid
  • the indentation for linking of the sealing lid in a case where the outer diameter of the nozzle and the outer diameter of the linking portion are different, it is preferable for the indentation for linking of the sealing lid to be fitted with the end of the linking portion in place of the nozzle, be mounted, and make the linking portion able to retain the sealing lid.
  • a tenth aspect of the invention is an optical measurement device for a reaction vessel, wherein front ends of a light guide portion bundle, which comprise a plurality of light guide portions, are provided to the respective linking portions, back ends of a light guide portion bundle of a portion of the light guide portion bundle are provided to first connecting ends of the connecting end arranging body, a portion or all of the remainder of the light guide portion bundle is provided to second connecting ends of the connecting end arranging body, the predetermined path comprises a first path and a second path, and by means of movement of the connecting end arranging body, first measuring ends provided on the measurement device respectively relatively move along a first path comprising the first connecting ends, and second measuring ends along a second path comprising the second connecting ends.
  • An eleventh aspect of the invention is an optical measurement device for a reaction vessel, wherein the first measuring end optically connects with an irradiation source of the measurement device, the second measuring end connects with a light receiving portion of the measurement device, an end corresponding to the first connecting end and an end corresponding to the second connecting end are arranged such that they are mixed, and the first measuring end is connectable with the first connecting end, and the second measuring end is connectable with the second connecting end.
  • the “mixing of the ends” prefferably be an arrangement such that the ends of the two or more types of light guide portions are homogenized and intertwined.
  • the vessel group comprises two or more exclusive regions corresponding to nozzles of respective groups, which comprise one or two or more nozzles, in which nozzles of a single group enter and nozzles of other groups do not enter, and the respective exclusive regions at the very least have at least one of the reaction vessels, one or two or more liquid housing parts that house reaction solutions used in the reactions, and sealing lids that are transportable to the reaction vessels using the nozzles and are able to seal the reaction solutions housed in the reaction vessels, and the light guide stage is extendingly provided across all of the exclusive regions such that linking portions of the light guide stage are associated such that linking portions of a single group, which comprises one or two or more linking portions, enter the respective exclusive regions and linking portions of other groups do not enter.
  • this is performed by providing an exclusive region control part that controls the nozzle head transfer mechanism such that nozzles of a single group enter the respective exclusive regions and the nozzles of the other groups do not enter, and performs control such that the linking portions of a single group enter the respective exclusive regions and the linking portions of the other groups do not enter.
  • a thirteenth aspect of the invention is an optical measurement device for a reaction vessel that is further provided with a set of traversable nozzles comprising one or two or more nozzles that are movable such that they traverse the respective exclusive regions, and are able to enter the respective exclusive regions.
  • a fourteenth aspect of the invention is an optical measurement device for a reaction vessel, wherein inspection information that identifies samples or shows managed sample information and testing content is visibly displayed at the respective exclusive regions, and a digital camera, which obtains image data by imaging the content displayed at the respective exclusive regions, which includes the sample information and the testing content, is provided to the traversable nozzles.
  • sample information represents the information necessary for identifying or managing the sample
  • examples of the information for identifying the sample include the attributes of the sample, such as the patient, the animal, the food, the soil, the polluted water, or the like, from which the sample was collected, and includes the name, the age, the sex, and the ID number of the patient, the sales location of the food, and the collection location and the collection date and time of the soil, or the physical properties of the collected sample, including the classification of the blood, the urine, the faeces, the bodily fluid, the cells, or the like, of the patient, the classification of the food, the classification of the soil, or the classification of the polluted water for example.
  • Examples of the information that manages the samples include the collector and the collection date of the sample thereof, the contact person for the sample, and the inspection date of the sample thereof for example.
  • the “inspection information” represents information showing the content of the inspection performed with respect to the sample, and can include inspection items such as various genetic information (SNPs, base sequence determination for example), genetic testing, or other various protein information or the types of reagents utilized in the inspection, the production lot number of the reagents, the calibration curves for the reagents, the type and the structure of the instruments for testing, or the type of biological material fixed to a carrier and the like, for example.
  • This information is displayed in a handwritten case, a printed case, a case where it is a barcode, or a case where it is a QR (registered trademark) code (a matrix type two-dimensional code) for example.
  • the image data is analyzed, converted to analysis data corresponding to the code data, and output.
  • a fifteenth aspect of the invention is an optical measurement device for a reaction vessel comprising: a nozzle head provided with a suction-discharge mechanism that performs suction and discharge of gases, and one or two or more nozzles that detachably mount dispensing tips in which the suction and the discharge of liquids is possible by means of the suction-discharge mechanism; a vessel group having at the very least one or two or more liquid housing parts that house reaction solutions used for various reactions, a liquid housing part that houses a magnetic particle suspension in which magnetic particles that are able to capture a target compound are suspended, a liquid housing part that houses a sample, one or two or more liquid housing parts that house a solution for separating and extracting of the target compound, and two or more reaction vessels; a nozzle head transfer mechanism that makes an interval between the nozzle head and the vessel group relatively movable; a magnetic force part that is able to adsorb the magnetic particles on an inner wall of dispensing tips mounted on the nozzles; a light guide stage provided to the
  • reaction solution is for example an amplification solution used for nucleic acid amplification.
  • target compound represents nucleic acids or the fragments thereof, which is the amplification subject. It is preferable to provide a tip detaching mechanism that detaches the sealing lids or the dispensing tips from the nozzles.
  • a sample supplying device having a dispensing function that supplies the samples, the reagents, the washing liquids, the buffers, and the like that are necessary for the vessel group at a position separate to the stage of the optical measurement device for a reaction vessel, and to make the whole stage, to which the supplied vessel group is built-in, be automatically moved to the position of the stage of the optical measurement device for a reaction vessel and to be made exchangeable. Consequently, processing, including preparation processing such as the dispensing processing or the supplying processing with respect to the vessel group, can be consistently performed.
  • a sixteenth aspect of the invention is an optical measurement method for a reaction vessel comprising: moving a light guide stage having two or more linking portions provided with ends of one or two or more light guide portions, which have a flexibility, with respect to two or more reaction vessels that are arranged in a vessel group; simultaneously directly or indirectly linking the reaction vessels and the linking portions and optically connecting the interior of the linked reaction vessels and the light guide portions; performing temperature control within the reaction vessels; guiding light from the reaction vessels to a connecting end arranging body having an arranging surface that arranges and supports along a predetermined path two or more connecting ends, to which back ends of the light guide portions, in which front ends thereof are provided to the linking portions, are provided, the connecting ends are provided corresponding to the respective linking portions; and optically connecting along the predetermined path the one or two or more measuring ends provided to a measurement device, which are provided approaching or in contact with the arranging surface, and the respective connecting ends, by moving the connecting end arranging body, to thereby make the measurement device receive light based on an optical state within the reaction vessels.
  • a seventeenth aspect of the invention is an optical measurement method for a reaction vessel, wherein the measurement device has a plurality of types of specific wavelength measurement devices that are able to receive light of specific wavelengths or specific wavelength bands, and the respective specific wavelength measurement devices have at least one measuring end that is successively optically connectable with the connecting ends along the predetermined path.
  • the method comprises aligning the plurality of measuring ends by a measuring end aligning portion, and successively optically connecting the measuring ends with the connecting ends along the path, to thereby make the respective specific wavelength measurement devices receive the light of specific wavelengths or specific wavelength bands based on an optical state within the reaction vessels.
  • An eighteenth aspect of the invention is an optical measurement method for a reaction vessel comprising simultaneously mounting two or more sealing lids, which have transparency, that are arranged in the vessel group and are fittable with apertures of the reaction vessels, on reaction vessels, and then moving the light guide stage with respect to the sealing lids of the reaction vessels.
  • a nineteenth aspect of the invention is an optical measurement method for a reaction vessel comprising pressing or shaking with respect to the sealing lids covering the apertures of the reaction vessels.
  • a twentieth aspect of the invention is an optical measurement method for a reaction vessel comprising heating the sealing lids sealing the reaction vessels through the light guide stage.
  • a twenty-first aspect of the invention is an optical measurement method for a reaction vessel comprising: directly or indirectly linking apertures of the reaction vessels and the linking portions; and at the time of performing temperature control within the reaction vessels, according to temperature control by a temperature controller, which has a temperature source provided making contact with or approaching lower side wall sections of the reaction vessels, heating upper side wall sections of the reaction vessels, which are positioned further on an upper side than the lower side wall sections, by means of a heat source of a heating portion, which is provided making contact with or approaching the upper side wall sections, and thereby preventing direct or indirect condensation of the linking portions.
  • a twenty-second aspect of the invention is an optical measurement method for a reaction vessel comprising: detachably mounting dispensing tips on respective nozzles, which are provided to a nozzle head and perform the suction and the discharge of gases; separating a target compound by using a magnetic force part, a nozzle head transfer mechanism that relatively moves an interval between the nozzle head and a vessel group, a magnetic particle suspension housed within a vessel group, in which magnetic particles that are able to capture a target compound are suspended, a sample, and a solution for separating and extracting of a target compound; introducing the separated target compound and a reaction solution used for reactions to a plurality of reaction vessels provided to a vessel group; moving a light guide stage, which has two or more linking portions that are provided to the nozzle head and in which front ends of one or two or more light guide portions are also provided, with respect to apertures of the reaction vessels by means of, at the very least, the nozzle head transfer mechanism; directly or indirectly simultaneously linking the apertures of the reaction vessels and the linking portions,
  • the fifteenth aspect of the invention, the sixteenth aspect of the invention, or the twenty-second aspect of the invention as a result of linking with the plurality of reaction vessels by means of the linking portions provided to the light guide stage and optically connecting with the interior of the reaction vessels, the optical state within the reaction vessels is transmitted via the plurality of reaction vessels, the light guide stage, and the light guide portion, to the connecting ends of the arranging surface of the connecting end arranging body, and the connecting ends arranged along the predetermined path on the arranging surface of the connecting end arranging body and the measuring ends of the measuring device are successively optically connected.
  • the arrangement of the connecting ends is such that it can be rearranged in order to perform the connection with the measuring ends rapidly and smoothly, and with certainty. Therefore, measurements with a high reliability, and more efficient and rapid measurements of the optical state within the reaction vessels, can be performed.
  • the arranging region of the connecting ends as a whole, or the distance between adjacent connecting ends can be achieved by integration that makes the arranging region or the adjacent distances of the linking portions smaller, and, by the smoothing of the movement of the measuring ends as a result of the linearization or the expansion of the radius of curvature of the predetermined path in comparison to the arrangement of the linking portion.
  • Switching of the optical system is performed by means of the movement between the measuring ends and the connecting ends on the arranging surface along the predetermined path. Therefore, the structure of the optical system can be simplified. Furthermore, by separating the connecting ends, the measuring ends, and the measurement device from the reaction vessels or the light guide stage, in which temperature control or heating control is performed, thermal effects on the optical system elements are excluded, and processing with a high reliability can be performed.
  • the movement of the connecting ends with respect to the measuring ends includes continuous or intermittent movement.
  • an amplification curve is created, which can be utilized in various analyses, such as the determination of the initial concentration of DNA.
  • the measurement of the plurality of reaction vessels can be performed in parallel with a single measuring device by utilizing the stable light receivable time, the expansion of the scale of the device is suppressed by reducing the number of measuring devices, and the manufacturing costs can be reduced. Further, since it is possible to measure, by successively moving the interval between the measuring ends and the connecting ends through the shortest distance along the predetermined path determined beforehand, the measurements can be performed in parallel by a simple mechanism of only a transfer mechanism.
  • the measurement device is immovable with respect to the reaction vessels and the light guide stage that is linked with the same. Therefore, at the time of a measurement, a load from an inertia force due to acceleration accompanying the movement, and the like, is not placed on the optical system elements or the electronic elements built into the measurement device body, displacements of the optical system elements and destruction of the electronic elements are prevented, and an accurate measurement with a high reliability can be performed.
  • the measurement device body is movable with respect to the reaction vessels and the like. Therefore, it is possible to transport the measurement device close to the reaction vessels and perform a measurement.
  • the fifteenth aspect of the invention, the sixteenth aspect of the invention, or the twenty-second aspect of the invention by providing a stage transfer mechanism that moves the light guide stage, it is possible to simultaneously directly or indirectly link the linking portions with the reaction vessels without human intervention. Therefore, cross-contamination is prevented, and processing can be efficiently performed.
  • the fourth aspect of the invention by using a plurality of types of luminescent compounds, colored compounds, color changing compounds, or light variation compounds, within a single reaction vessel, then for example in a case where amplification processing is performed in parallel under the same conditions on a plurality of types of amplification subjects, it is possible to perform multiplex PCR amplification or multiplex real-time PCR on a plurality of types of amplification subjects by using a primer labeled with a plurality of types of luminescent compounds and the like.
  • the respective specific wavelength measuring devices each receive light of a specific wavelength or a specific wavelength band, the effects of other specific wavelengths or specific wavelength bands are not received, and high-accuracy measurements can be performed.
  • the respective specific wavelength measuring devices are each modularized such that removal and addition can be performed, processing with a high versatility according to the processing aims can be performed.
  • the sealing lids arranged in the vessel group to the linking portions or the nozzles, it is possible to perform mounting to the apertures of the reaction vessels by means of movement of the nozzle head and the like. Therefore the housed substances within the reaction vessels do not make direct contact with the linking portions of the stage, and hence cross-contaminations can be effectively prevented. Furthermore, since it is not necessary to provide a dedicated mechanism for mounting the sealing lids on the reaction vessels, the scale of the device is not expanded, and the manufacturing costs are reduced.
  • the sealing of the reaction vessels can be performed with certainty by controlling the sealing lids covering the apertures of the reaction vessels such that they are pressed. Furthermore, by shaking the sealing lids, the sealed state between the apertures of the reaction vessels and the sealing lids can be rapidly and easily removed and released. Therefore, a high processing efficiency and reliability can be obtained.
  • the seventh aspect of the invention by performing heating of the upper side wall sections of the reaction vessels according to the temperature control of the lower side wall sections of the reaction vessels, the direct or indirect condensation of the linking portions can be prevented.
  • the linking portions and the sealing lids are not directly heated, and heating is performed at the upper side wall sections of the reaction vessels. Therefore, the effects of direct heating toward the optical system elements provided to the linking portions can be reduced or removed. Consequently, in addition to reducing or removing image distortions and the like due to the degradation or the change in properties of the optical system elements, various optical system elements can be provided to the linking portions. Therefore, precise measurements with a high versatility can be performed.
  • the twelfth aspect of the invention or the fifteenth aspect of the invention, as a result of the light guide stage being built into the nozzle head to which the nozzles are provided, a transfer mechanism (at the very least for the X axis and Y axis directions) between the reaction vessels of the measuring device is not separately provided, and since it can be combined with the transfer mechanism of the nozzles, the expansion of the scale of the device can be prevented.
  • the transfer to the reaction vessel of the sample solution, the reagent solutions, and the reaction solutions, which are to be housed within the reaction vessels, and which represent the measurement subject, and the preparation can be performed using the functions of the nozzles, steps from the processing to the measurement of the measurement subject can be consistently, efficiently, and rapidly performed.
  • the sealing lids are transferred by being mounted on the nozzles, a new, dedicated lid transfer mechanism is not provided, and the expansion of the device scale can be prevented by using existing mechanisms.
  • the sealing lids are transferred or retained by being mounted on the linking portions, it is possible to make the diameters of the linking portions and the nozzles different. Therefore, it becomes possible to provide various optical system elements within the linking portions that are not limited by the size of the nozzles, and processing with a high versatility and with reliability can be performed.
  • the tenth aspect of the invention by providing the front end of a light guide portion bundle comprising a plurality of light guide portions to the linking portions, dividing the light guide portion bundle into a plurality of bundles, and separating the back end of the light guide portions to a plurality of connecting ends, and by simultaneously connecting with a plurality of measuring ends having one or a plurality of measurement devices, the receiving of light of a plurality of types of wavelengths or wavelength bands, or the irradiation of excitation light with respect to the reaction vessels and the receiving of light can be simultaneously performed. Therefore, processing of multiple fluorescent lights can be performed.
  • the first measuring ends optically connect with the irradiation source of the measurement device
  • the second measuring ends optically connect with the light receiving portion of the measurement device
  • the ends of the light guide portions that are connectable with the irradiation source and the light receiving portion are mixed. Therefore, at the time of a measurement of fluorescent light, it is possible to irradiate excitation light within the reaction vessel without unevenness, and to measure the strength corresponding to the amount of fluorescence with certainty.
  • the same target compounds or samples can be utilized in reactions in which the conditions are changed. Furthermore, by combining the movement of the traversable nozzles with the transfer mechanism of the connecting end arranging body, the expansion of the device scale can be suppressed.
  • reaction and measurement processing with a high reliability can be performed without expanding the device scale.
  • FIG. 1 is an overall block-diagram showing an optical measurement device for a reaction vessel according to a first embodiment of the present invention.
  • FIG. 2 is an overall perspective view showing the optical measurement device for a reaction vessel according to a first exemplary embodiment.
  • FIG. 3 is a plan view showing enlarged, a vessel group of the optical measurement device for a reaction vessel shown in FIG. 2 .
  • FIG. 4 is a front view and a side view showing enlarged, a nozzle head of the optical measurement device for a reaction vessel shown in FIG. 2 .
  • FIG. 5 is a perspective view as viewed from the front side of the nozzle head shown in FIG. 4 .
  • FIG. 6 is a side view showing more specifically, the transfer mechanisms and the suction-discharge mechanism shown in FIG. 4 .
  • FIG. 7 is a perspective view showing more specifically, the suction-discharge mechanism 53 and the like shown in FIG. 4 .
  • FIG. 8 is a perspective view as viewed from the rear side of the nozzle head shown in FIG. 4 .
  • FIG. 9 is a cross-sectional view showing a state in which the linking portion shown in FIG. 4 is linked with a reaction vessel.
  • FIG. 10 is a drawing showing the specific wavelength measurement device shown in FIG. 4 .
  • FIG. 11 is a perspective view showing a light guide stage, a connecting end arranging body, and a sealing lid transport mechanism of an optical measurement device for a reaction vessel according to a second exemplary embodiment.
  • FIG. 12 is an enlarged perspective view showing the light guide stage shown in FIG. 11 with a portion cut away.
  • FIG. 13 is an enlarged cross-sectional view of the linking portion shown in FIG. 12 .
  • FIG. 14 is a cross-sectional view showing an example of the sealing lid shown in FIG. 11 .
  • FIG. 15 is an enlarged perspective view of the sealing lid transporting body shown in FIG. 11 .
  • FIG. 16 is a cross-sectional view of the sealing lid transporting body shown in FIG. 15 .
  • FIG. 17 is a perspective view as viewed from the lower side of the sealing lid transporting body shown in FIG. 15 .
  • FIG. 18 is a schematic diagram showing an example of the positional relationship between the optical fiber ends provided on the linking portions and the reaction vessel.
  • FIG. 19 is an overall block-diagram showing an optical measurement device for a reaction vessel according to a second embodiment of the present invention.
  • FIG. 20 is a side view showing more specifically, the transfer mechanism and the suction-discharge mechanism according to a first exemplary embodiment of FIG. 19 .
  • FIG. 21 is a cross-sectional view showing a state in which a linking portion according to the first exemplary embodiment of FIG. 19 is linked with a reaction vessel.
  • FIG. 22 is a cross-sectional view showing a state in which a linking portion according to a second exemplary embodiment of FIG. 19 is linked with a reaction vessel.
  • FIG. 23 is a cross-sectional view showing a state in which a linking portion according to a third exemplary embodiment of FIG. 19 is linked with a reaction vessel.
  • FIG. 1 is shows a block-diagram of an optical measurement device for a reaction vessel 10 according to a first embodiment of the present invention.
  • the nozzle head 50 has: a stage Z axis transfer mechanism 35 that makes the light guide stage 32 movable in the Z axis direction with respect to the vessel group 20 independent of the nozzle arrangement portion 70 ; a nozzle Z axis transfer mechanism 75 that makes the nozzle arrangement portion 70 movable in the Z axis direction with respect to the vessel group 20 independent of the stage 30 ; a magnetic force part 57 that, by means of a magnet 571 provided on a narrow diameter portion 211 ia of a dispensing tip 211 i detachably mounted on the nozzle 71 i such that it can approach and separate, is able to apply and remove a magnetic field with respect to the interior; a suction-discharge mechanism 53 that makes the suction and the discharge of liquids with respect to the dispensing tip 211 i mounted on the nozzle 71 i possible by performing the suction and the discharge of gases with respect to the nozzle 71 i ; and a punching mechanism 55 which is driven by the suction-dis
  • the nozzle head 50 further has a connecting end arranging body 30 that arranges and supports a plurality (twelve in this example) of connecting ends 34 i , which are provided corresponding to the respective linking portions 31 i and are provided with the back ends of optical fibers (bundle) 33 i , which represent light guide portions in which the front ends thereof are provided to the linking portions 31 i , such that, as an arranging surface, they are integrated along a predetermined path (a linear path along the Y axis direction in this example) provided on a vertical plane at a narrower spacing than the spacing between the linking portions 31 i . Furthermore, the connecting end arranging body 30 is provided at a position that is separated from the light guide stage 32 and the reaction vessel group 23 i .
  • the respective specific wavelength measurement devices 40 j have measuring ends 44 j that are provided approaching or making contact with the arrangement surface, and are successively connectable with the respective connecting ends 34 i along the predetermined path (a linear path along the Y axis direction). Furthermore, the respective measuring ends 44 j have two ends, namely a first measuring end 42 j and a second measuring end 43 j arranged along the Y axis direction.
  • the first measuring ends 42 j optically connect with an irradiation source provided to the specific wavelength measurement devices 40 j .
  • the second measuring ends 43 j optically connect with a photoelectric device, such as a photomultiplier tube, provided to the specific wavelength measurement devices 40 j .
  • the nozzle head 50 has an arranging body Y axis transfer mechanism 41 , which represents a light guide switching mechanism, that moves the connecting end arranging body 30 along the Y axis direction on the nozzle head 50 such that the respective connecting ends 34 i arranged on the connecting end arranging body 30 and the respective measuring ends 44 j are successively connected.
  • an arranging body Y axis transfer mechanism 41 which represents a light guide switching mechanism, that moves the connecting end arranging body 30 along the Y axis direction on the nozzle head 50 such that the respective connecting ends 34 i arranged on the connecting end arranging body 30 and the respective measuring ends 44 j are successively connected.
  • the light guide stage 32 has a heater 37 , which represents the heating portion, for preventing condensation of the ends of the linking portions 31 i or the mounted scaling lids 251 i , which have transparency, by heating.
  • the vessel group 20 comprises a plurality (twelve in this example) of exclusive regions 20 i , in which one (in this example, one group corresponds to one) nozzle enters and the other nozzles do not enter, that correspond to the respective nozzles.
  • the respective exclusive regions 20 i have: a liquid housing part group 27 i comprising a plurality of housing parts in which reagent solutions and the like are housed or are housable; a sealing lid housing part 25 i in which one or two or more sealing lids 251 i , which have transparency, that are detachably mounted on the nozzles are housed or are housable; and housing parts for tips and the like 21 i that house, a plurality of dispensing tips 211 i that are detachably mounted on the nozzles, and the samples, and the like.
  • the liquid housing part group 27 i has, at the very least, one or two or more liquid housing parts that house a magnetic particle suspension, and two or more liquid housing parts that house a solution for separating and extracting used for the separation and the extraction of nucleic acids or the fragments thereof. If necessary, it further has two or more liquid housing parts that house a solution for amplification used for the amplification of nucleic acids, and a liquid housing part that houses a sealing liquid for sealing the solution for amplification housed in a PCR tube 231 i , which represents the reaction vessel, within the PCR tube 231 i .
  • the exclusive regions 20 i display a barcode as the sample information and the inspection information for identifying the exclusive regions 20 i .
  • the nozzle head 50 is provided with a single traversable nozzle 71 0 in which liquids are transportable or dispensable by traversing (moving in the Y axis direction) the exclusive regions 20 i , and suction and discharge is made to be performed by a traversable nozzle suction-discharge mechanism 17 that is separate from the suction-discharge mechanism 53 . Consequently, the solution of DNA and the like housed in a given exclusive region 20 i can be dispensed or delivered to the other exclusive regions 20 k (k ⁇ i). It is preferable for this movement in the Y axis direction to be also used by the arranging body Y axis transfer mechanism 41 .
  • the CPU+program 60 has, at the very least: a nucleic acid processing control portion 63 that performs instructions for a series of processes, such as extraction and amplification with respect to nucleic acids or the fragments thereof, and sealing of the solution for amplification, with respect to the temperature controller 29 , the nozzle head transfer mechanism 51 , the tip detaching mechanism 59 , the suction-discharge mechanism 53 , the magnetic force part 57 , and the nozzle Z axis transfer mechanism 75 ; and a measurement control portion 61 that, after the nozzle head transfer mechanism 51 and the stage Z axis transfer mechanism 35 are controlled such that the linking portions 31 are simultaneously directly or indirectly linked with the apertures of the plurality (twelve in this example) of PCR tubes 231 i , instructs a measurement by the measurement devices 40 j by controlling the arranging body Y axis transfer mechanism 41 such that the optical fibers (bundle) 33 i , which represent the light guide portions of the linking portions 31 i , and the first measuring
  • the nucleic acid processing control portion 63 has an extraction control part 65 and a sealing lid control part 67 .
  • the nucleic acid processing control portion 63 has the extraction control part 65 that performs instructions with respect to the tip detaching mechanism 59 , the suction-discharge mechanism 53 , the magnetic force part 57 , the nozzle Z axis transfer mechanism 75 , the nozzle head transfer mechanism 51 , and the stage Z axis transfer mechanism 35 , for a series of processes with respect to the nucleic acids or the fragments thereof, and the sealing lid control part 67 that performs instructions with respect to the stage Z axis transfer mechanism 35 and the nozzle head transfer mechanism 51 for a sealing process by the sealing lids.
  • FIG. 2 is a see-through perspective view showing an external view of the optical measurement device for a reaction vessel 10 according to the first embodiment of the present invention.
  • FIG. 2A is a drawing showing an external view of the optical measurement device for a reaction vessel 10 , which has: an enclosure 11 with a size of 500 mm in depth (Y axis direction), 600 mm in width (X axis direction), and 600 mm in height (Z axis direction) for example, in which the vessel group 20 , the nozzle head 50 , a nozzle head transfer mechanism 51 described in FIG. 1 , and a CPU+program 60 are housed in the interior; a control panel 13 provided on the enclosure 11 ; and a drawer 15 to which a stage is provided.
  • an enclosure 11 with a size of 500 mm in depth (Y axis direction), 600 mm in width (X axis direction), and 600 mm in height (Z axis direction) for example, in which the vessel group 20 , the nozzle head 50 , a nozzle head transfer mechanism 51 described in FIG. 1 , and a CPU+program 60 are housed in the interior; a control panel 13 provided on the enclosure 11 ; and
  • FIG. 2B is a perspective view that sees through the interior of the enclosure 11 , wherein the stage, into which the vessel group 20 is built-in, is able to be drawn out to the exterior by means of the drawer 15 , and further, the nozzle head 50 is movably provided in the X axis direction with respect to the vessel group 20 by means of the nozzle head transfer mechanism 51 of FIG. 1 .
  • FIG. 2B is a drawing showing that the nozzle head 50 is largely provided with: various transfer mechanisms 52 having an arranging body Y axis transfer mechanism 41 , a stage Z axis transfer mechanism 35 , and a nozzle Z axis transfer mechanism 75 ; a traversable nozzle suction-discharge mechanism 17 ; the measuring device 40 ; a connecting end arranging body 30 ; an optical fiber (bundle) 33 i ; and the magnetic force part 57 .
  • the traversable nozzle suction-discharge mechanism 17 and the traversable nozzles 71 0 are supported such that they are movable in the Y axis direction by means of the arranging body Y axis transfer mechanism 41 such that they traverse the exclusive regions 20 i .
  • FIG. 3 is a plan view showing enlarged, the vessel group 20 shown in FIG. 2 .
  • the exclusive regions 20 i are separately provided with a cartridge vessel for PCR amplification 201 i , a cartridge vessel for nucleic acid extraction 202 i , and a cartridge vessel for housing tips 203 i .
  • the prevention of cross-contaminations between the exclusive regions 20 i is achieved by providing partition walls 201 0 , 202 0 , and 203 0 on the cartridge vessels 201 i , 202 i , and 203 i of the exclusive regions 20 i on the edge of one side along the X axis direction.
  • the cartridge vessel for PCR amplification 201 i has: the PCR tubes 231 i , which represent the reaction vessel that are detachably linked with the twelve linking portions 31 i provided to the light guide stage 32 , via a single sealing lid 251 i which has transparency; the liquid housing parts 271 i which house a buffer solution necessary for the PCR reaction; the sealing lid housing parts 25 i which house the sealing lids 251 i ; the housing part for tips and the like 21 i that house the tips for punching for punching the film covering the PCR tubes 231 i and the liquid housing parts 271 i , and the dispensing tips 211 i , and barcodes 81 i that display the sample information and the inspection information relating to the cartridge vessels for PCR amplification 201 i .
  • the cartridge vessels for nucleic acid extraction 202 i has: seven liquid housing parts 272 i for example, that house various reagents for nucleic acid extraction; reaction vessels 232 i that house the extracted nucleic acids; and barcodes 82 i that display various information, such as the sample information and the inspection information, related to the cartridge vessel.
  • the PCR tubes 231 i and the reaction vessels 232 i are temperature controllable by means of the temperature controller 29 .
  • the cartridge vessels for housing tips 203 i has: a tip for punching that is able to punch the film covering the cartridge vessel for nucleic acid extraction 202 i ; two small-quantity dispensing tips that perform the dispensing of small quantities of liquids; housing parts for tips and the like 21 i that house dispensing tips for separations that are able to perform separation by adsorbing magnetic particles on an inner wall by applying and removing a magnetic force from the exterior, and a barcode 83 i that displays various information relating to the cartridge vessel 203 i .
  • the capacity of the PCR tube 231 i which represents the reaction vessel, is of the order of approximately 200 ⁇ L, and the capacity of the other reaction vessels, liquid housing parts, and tubes is of the order of approximately 2 mL.
  • the PCR tube 231 i is used for the amplification of nucleic acids or the fragments thereof, and temperature control is performed by means of the temperature controller 29 based on a predetermined amplification method, such as a thermal cycle (from 4° C. to 95° C.) for example.
  • the PCR tube 231 i is formed with two levels as shown in FIG. 9 for example, and has a narrow-mouthed piping part 233 provided on the lower side in which the solution for amplification 234 i is housed, and a wide-mouthed piping part 235 provided on the upper side in which the sealing lid 251 i is fittable.
  • the inner diameter of the wide-mouthed piping part 235 i is 8 mm for example, and the inner diameter of the aperture of the narrow-mouthed piping part 233 i is approximately 5 mm for example.
  • the reaction vessels 232 i housed in the reaction tube housing holes are temperature controlled for incubation to a constant temperature of 55° C. for example.
  • the liquid housing part group 272 i houses the solutions for separating and extracting as follows.
  • a first liquid housing part houses 40 ⁇ L of Lysis 1
  • a second liquid housing part houses 200 ⁇ L of Lysis 2
  • a third liquid housing part houses 500 ⁇ L of a binding buffer solution
  • a fourth liquid housing part houses a magnetic particle suspension
  • a fifth liquid housing part houses 700 ⁇ L of a washing liquid 1
  • a sixth liquid housing part houses 700 ⁇ L of a washing liquid 2
  • a seventh liquid housing part houses 50 ⁇ L of distilled water as a dissociation liquid
  • an eighth liquid housing part which is slightly separated, houses 1300 ⁇ L of isopropyl alcohol (isopropanol) used for the removal of protein and the like, as a portion of the solution for separating and extracting protein.
  • the respective reagents and the like are prepacked as a result of the punchable film covering the respective apertures thereof.
  • 1.2 mL of distilled water is housed in a separate distilled water reservoir, and tubes that house suspensions of bacteria, cells, and the like, or samples such as whole blood, are separately prepared for each of the respective exclusive regions 20 i .
  • FIG. 4 is a front view and a side view of the nozzle head 50 according to the first embodiment of the present invention
  • FIG. 5 is a perspective view from the front side.
  • the nozzle head 50 is one having: a nozzle arranging portion 70 in which twelve nozzles 71 i are arranged; a tip detaching mechanism 59 that is able to detach dispensing tips 211 i mounted on the nozzles 71 i ; a suction-discharge mechanism 53 ; a magnetic force part 57 having twelve magnets 571 provided such that they are able to approach and separate with respect to the dispensing tips 211 i ; a light guide stage 32 ; twelve linking portions 31 i provided to the light guide stage 32 ; a transfer mechanism portion 52 having a nozzle Z axis transfer mechanism 75 and a stage Z axis transfer mechanism 35 ; optical fibers (bundles) 33 i representing flexible light guide portions that extend to the rear side from the linking portions 31 i ; a connecting end arranging body 30 ; the arranging body Y axis transfer mechanism 41 ; a measuring device 40 having a measuring end 44 ; a traversable nozzle 71 0 ; and
  • the nozzle arranging portion 70 is provided with a cylinder supporting member 73 that supports twelve cylinders 531 i such that they are arranged along the Y axis direction at a predetermined pitch of 18 mm for example.
  • the nozzles 71 i are provided on the downward end of the cylinders 531 i such that they are communicated with the cylinders 531 i .
  • the tip detaching mechanism 59 is provided with detaching shafts 593 on both sides, and has a tip detaching member 591 that detaches the twelve dispensing tips 211 i from the nozzles 71 i by sliding in the vertical direction.
  • the tip detaching member 591 is interlocked with the lowering of two tip detaching shafts 593 and detaches the dispensing tips 211 i from the nozzles 71 i .
  • the tip detaching shaft 593 is elastically supported by the cylinder support member 73 by means of a spring 600 wrapped around the outer periphery such that it is biased in the upward direction, and the upper end thereof is positioned above the upper ends of the cylinders 531 i but below the lower limit position of the vertical movement range of the normal suction and discharge of a cylinder drive plate 536 mentioned below.
  • the two tip detaching shafts 593 are pushed in the downward direction by means of the cylinder drive plate 536 exceeding the vertical movement range and being lowered near the upper end of the cylinder 531 i , thus lowering the tip detaching member 591 .
  • the tip detaching member 591 has twelve holes having an inner diameter that is larger than the outer diameter of the nozzles 71 i but smaller than the mounting portions 211 i e , which represents the largest outer diameter of the dispensing tips 211 i , arranged at the pitch mentioned above such that the nozzles 71 i pass therethrough.
  • the suction-discharge mechanism 53 has: the cylinders 531 i for performing suction and discharge of gases with respect to the dispensing tips 211 i which are communicated with the nozzles 71 i and mounted on the nozzles 71 i , and a piston rod 532 that slides within the cylinders 531 i ; a drive plate 536 that drives the piston rod 532 ; a ball screw 533 that threads with the drive plate 536 ; a nozzle Z axis movable body 535 that, in addition to axially supporting the ball screw 533 , is integrally formed with the cylinder support member 73 ; and a motor 534 mounted on the nozzle Z axis movable body 535 that rotatingly drives the ball screw 533 .
  • the magnetic force part 57 has a magnet 571 that is provided such that it can approach and separate with respect to the narrow diameter portions 211 i a of the dispensing tips 211 i detachably mounted on the nozzles 71 i , and is able to apply and remove a magnetic field in the interior of the dispensing tips 211 i .
  • the nozzle Z axis transfer mechanism 75 has: a ball screw 752 that threads with the Z axis movable body 535 and vertically moves the Z axis movable body 535 along the Z direction; a nozzle head substrate 753 that axially supports the ball screw 752 , and in addition to axially supporting the magnet 571 on the lower side thereof such that it is movable in the X axis direction, is itself movable in the X axis direction by means of the nozzle head transfer mechanism 51 mentioned below; and a motor 751 provided on the upper side of the nozzle head substrate 753 that rotatingly drives the ball screw 752 .
  • the light guide stage 32 comprises a horizontal plate 32 a and a vertical plate 32 b , which are letter-L shaped plates in cross-section, and is provided with twelve cylinder-shaped linking portions 31 i having front ends of optical fibers (bundles) 33 i , which are directly or indirectly linkable with the apertures of the PCR tubes 231 i and are optically connected with the interior of the linked PCR tubes 231 i , protruding in the downward direction from the horizontal plate 32 a .
  • a heater 37 that heats the sealing lids 251 i mounted on the linking portions 31 i and prevents condensation, is built into the bases of the linking portions 31 i .
  • the temperature of the heater is set to approximately 105° C.
  • the light guide stage 32 is supported by the nozzle head substrate 753 by means of the nozzle head stage Z axis transfer mechanism 35 such that it is movable in the Z axis direction, it is movable in the nozzle X axis direction and Z axis direction.
  • the stage Z axis transfer mechanism 35 has: a side plate 355 provided on the nozzle head substrate 753 ; a mount driving band-shaped member 354 that is supported by a timing belt 352 spanning between two sprockets 353 arranged in the vertical direction axially supported by the side plate 355 , and vertically moves in the Z axis direction; and a motor attached to the rear side of the nozzle head substrate 753 that rotatingly drives the sprockets 353 .
  • the traversable nozzle suction-discharge mechanism 17 is provided with a tip detaching mechanism 592 on the lower side of the suction-discharge mechanism 17 and on the upper side of the nozzle 71 0 . Furthermore, the suction-discharge mechanism 17 is provided with a digital camera 19 .
  • the suction-discharge mechanism 17 is movably provided in the Y axis direction by being attached to a timing belt 171 spanning between two sprockets 173 that are rotatingly driven by a motor 172 .
  • FIG. 8 represents two perspective views of the nozzle head according to the first embodiment viewed from the rear side, which show the connection starting position ( FIG. 8A ) and the connection finishing position ( FIG. 8B ) at the time the respective connecting ends of the connecting end arranging body 30 and the respective measuring ends are successively optically connected.
  • a connecting end arranging body 30 in which the connecting ends 34 i provided corresponding to the respective linking portions 31 i to which the front ends of the optical fibers (bundles) 33 i which pass through the horizontal plate 32 a of the light guide stage 32 , are provided, and provided with the back ends thereof, are arranged on an arranging surface on a path along a straight line in the Y axis direction, which represents a predetermined path, at a shorter spacing than the spacing of the linking portions 31 i ; and six measuring ends that are provided in the vicinity of, or making contact with, the arranging surface, and are successively optically connectable with the connecting ends 34 i along the straight line.
  • a measuring device 40 in which, by means of optical connections between the connecting ends and the measuring ends, the fluorescent light within the PCR tubes 231 i , which represents the optical state, is receivable, and excitation light is also able to be irradiated.
  • the light guide stage 32 has a cylinder-shaped body 311 i , which retains the optical fibers (bundles) 33 i extending to the rear side from the linking portions 31 i such that they pass through the interior in order to prevent folding, protrudingly provided upward from the horizontal plate 32 a directly above the linking portions 31 i .
  • the connecting end arranging body 30 is also provided with a cylinder-shaped body 301 i , which retains the optical fibers (bundles) 33 i extending from the connecting ends 34 i such that they pass through the interior in order to prevent folding, on the connecting end 34 i side.
  • the arranging body Y axis transfer mechanism 41 that moves the connecting end arranging body 30 in the Y axis direction has: arms 412 and 413 provided to the connecting end arranging body 30 ; a joining body 411 that joins the arms 412 and 413 and the timing belt; a guide rail 414 that guides the Y axis movement of the joining body 411 ; and two sprockets spanned by the timing belt and arranged along the Y axis direction.
  • the measuring device 40 is one that supports the measurement of fluorescent light and comprises six types of specific wavelength measuring devices 40 j that are linearly aligned along a straight line in the Y axis direction, which represents the predetermined path, such that they support the measurement of six types of fluorescent light, and they are provided fixed on a substrate of the nozzle head 50 , such as the frame that encloses the transfer mechanism portion 52 , or a member that supports the same. Therefore, depending on the mechanism provided to the transfer mechanism portion 52 , the measuring device 40 does not move.
  • the specific wavelength measuring devices 40 j have: measuring ends 44 j arranged along a straight line path in the Y axis direction which represents the predetermined path, such that they successively optically connect to the connecting ends 34 i ; light detectors 46 j in which an optical system component having an irradiation source that irradiates excitation light to the PCR tubes 231 i and a light receiving portion that receives the fluorescent light generated in the PCR tubes 231 i are built-in; and circuit boards 47 j .
  • the measuring ends 44 j have first measuring ends 42 j that optically connect with the irradiation source, and second measuring ends 43 j that optically connect with the light receiving portion.
  • the light detectors 46 j and the circuit boards 47 j correspond to the measuring device main body.
  • the pitch between the respective connecting ends 34 i assuming a pitch between the linking portions 31 i of 18 mm, is 9 mm, which is half thereof. Then, the pitch between the measuring ends 44 j is 9 mm or less for example.
  • the first measuring ends 42 j and the second measuring ends 43 j of the measuring ends 44 j of the respective specific wavelength measuring devices 40 j are arranged aligned in a lateral direction (Y axis direction) along the straight line of the Y axis direction along the predetermined path, and a case where they are arranged aligned in a longitudinal direction (X axis direction).
  • the respective measuring devices without stopping the emission of the excitation light, the respective measuring devices successively receive light at a timing for receiving light determined based on the speed of the connecting end arranging body, the pitch between the connecting ends, the distance between the first measuring ends and the second measuring ends of the measuring ends, and the pitch between the measuring ends.
  • the connecting end a first connecting end and a second connecting end are provided.
  • the first connecting end connects only with the first measuring ends 42 j
  • the second measuring ends 43 j connect only with the second connecting end.
  • the fixed path represents two paths.
  • the optical fibers (bundles) 33 i have optical fibers (bundles) 331 i for receiving light that have the first connecting end, and optical fibers (bundles) 332 i for irradiation that have the second connecting end.
  • connection with the linking portions is performed by means of optical fibers in which the irradiation source and the light receiving portion are dedicated, and therefore, the control is simple, and the reliability is high since optical fibers that are respectively suitable for irradiation and receiving light can be used.
  • the speed of the connecting end arranging body 30 with respect to the measuring ends 44 j is determined with consideration of the stable light receivable time, the lifetime of the fluorescent light with respect to excitation light irradiation, the number of connecting ends, the pitch between the connecting ends, and the like (the distance of the predetermined path). In the case of a real-time PCR measurement, it is controlled such that it becomes 100 mm to 500 mm per second for example. In the present embodiment, since the movement is performed by sliding the arranging surface with respect to the measuring ends 44 , the incidence of optical noise to the measuring ends 44 can be prevented. Furthermore, the connecting end arranging body 30 moves with respect to the measuring ends intermittently such that it momentarily stops at each pitch advance between the connecting ends or between the measuring ends, or continuously.
  • the PCR tube 231 i comprises a wide-mouthed piping part 235 i and a narrow-mouthed piping part 233 i that is communicated with the wide-mouthed piping part 235 i and is formed narrower than the wide-mouthed piping part 235 i . Furthermore, the narrow-mouthed piping part 233 i is dried beforehand, or a liquid state solution for amplification 234 i is housed beforehand.
  • the reagent for real-time amplification represents 70 ⁇ L of a master mix (SYBR (registered trademark) Green Mix) consisting of enzymes, buffers, primers, and the like.
  • the diameter of the optical fibers (bundle) 33 i which represents the light guide portion that passes through the interior of the linking portion 31 i , to be the same or larger than the diameter of the aperture of the narrow-mouthed piping part 233 i . Consequently, it becomes possible to receive the light from the PCR tube 231 i with certainty.
  • the narrow-mouthed piping part 233 i is housed within a block for temperature control that is heated or cooled by means of the temperature controller 29 .
  • the optical fibers (bundle) 33 i comprise optical fibers (bundle) for irradiation 332 i that are connectable with the second measuring end 43 j and optical fibers (bundle) for receiving light 331 i that are connectable with the first measuring end 42 j.
  • FIG. 9B is a drawing showing an example in which the optical fibers (bundle) 33 i comprise an optical fiber bundle in which an optical fiber bundle comprising a plurality of optical fibers for receiving light that are connectable with the second measuring end 43 j , and an optical fiber bundle comprising a plurality of optical fibers for irradiation that are connectable with the first measuring end 42 j , are combined such that they become uniform.
  • the feeding device for samples and the like is a device for dispensing and supplying parent samples and the like with respect to the vessel group 20 , and the stage in which is integrated the vessel group 20 to which the parent samples and the like have been supplied, is automatically moved to the optical measurement device for a reaction vessel and the like.
  • the feeding device for samples and the like for example, has a parent vessel group that houses parent samples and the like, a tip detaching mechanism, a suction-discharge mechanism, and a single nozzle that, in addition to the suction and the discharge of gases being performed by means of the mechanisms, is detachably mounted with dispensing tips 211 i .
  • nozzle head provided with a mechanism that moves along the Z axis direction with respect to the parent vessel group and the housing part group for tips and the like 21 of the vessel group 20
  • an X axis movable body provided with a Y axis transfer mechanism that moves the nozzle head in the Y axis direction with respect to the parent vessel group and the like
  • an X axis transfer mechanism that moves the X axis movable body along the X axis with respect to the parent vessel group and the like, and the parent vessel group.
  • the parent vessel group prefferably has a parent sample housing part group arranged in a 12 row ⁇ 8 column matrix form that houses the parent samples to be supplied to the housing part group for tips and the like 21 of the vessel group 20 , a distilled water and washing liquid group, and a reagent bottle group.
  • FIG. 10 is a drawing showing a light detector 461 of a single specific wavelength measurement device 401 belonging to the measurement device 40 according to a first exemplary embodiment of the present invention.
  • the specific wavelength measurement device 461 in addition to having an optical fiber 469 for excitation light to be outgoing to the PCR tube 231 i and an optical fiber 479 for light from the PCR tube 231 i to be incoming, has a measuring end 441 provided on the lower ends of a first measuring end 421 of the optical fiber 469 and a second measuring end 431 of the optical fiber 479 , an irradiation portion 462 that has a LED 467 that irradiates excitation light through the optical fiber 469 and a filter 468 , and a light receiving portion that has an optical fiber 479 , a drum lens 478 , a filter 477 , and a photodiode 472 .
  • This example shows a case where the first measuring end 421 and the second measuring end 431 are provided along a direction (X axis direction) perpendicular to the straight line of the Y axis direction, which represents the predetermined path.
  • Step S 1 to step S 13 below correspond to separation and extraction processing.
  • step S 1 the drawer 15 of the optical measurement device for a reaction vessel 10 shown in FIG. 2 is opened, the vessel group 20 is pulled out, and by utilizing a feeding device for samples and the like, which is provided separately from the vessel group 20 , the samples which are subject to testing, various washing liquids, and various reagents, are supplied beforehand, and furthermore, a liquid housing part in which reagents and the like are prepacked is mounted.
  • step S 2 following returning of the vessel group 20 and closing of the drawer 15 , the start of the separation and extraction and amplification processing is instructed by means of the operation of the touch panel of the control panel 13 for example.
  • step S 3 the extraction control part 65 provided to the nucleic acid processing controller 63 of the CPU+program 60 of the optical measurement device for a reaction vessel 10 instructs the nozzle head transfer mechanism 51 and moves the nozzle head 50 in the X axis direction, positions the tip for punching mounted to the nozzle 71 i above the first liquid housing part of the liquid housing part group 27 i of the vessel group, and punches the film covering the aperture of the liquid housing part by lowering the nozzle by means of the nozzle Z axis transfer mechanism 75 , and in the same manner, the other liquid housing parts of the liquid housing part group 27 i and the reaction vessel group 23 i are successively punched by moving the nozzle head 50 in the X axis direction.
  • step S 4 the nozzle head 50 is again moved in the X axis direction and moved to the housing part for tips and the like 21 i , and the nozzles 71 i are lowered by means of the nozzle Z axis transfer mechanism 75 , and the dispensing tips 211 i are mounted.
  • the dispensing tips 211 i are moved along the X axis by means of the nozzle head transfer mechanism 51 , and advanced to the eighth liquid housing part of the liquid housing part group 27 i .
  • a predetermined amount of isopropanol is aspirated from the liquid housing part, and they are again moved along the X axis direction, and predetermined amounts are respectively dispensed into the solution components (NaCl, SDS solutions) housed in the third liquid housing part and the fifth liquid housing part, and the distilled water housed in the sixth liquid housing part, so that 500 ⁇ L of a binding buffer solution (NaCl, SDS, isopropanol), 700 ⁇ L of a washing liquid 1 (NaCl, SDS, isopropanol), and 700 ⁇ L of a washing liquid 2 (water 50%, isopropanol 50%) are respectively prepared as solutions for separating and extracting within the third, the fifth, and the sixth liquid housing parts.
  • a binding buffer solution NaCl, SDS, isopropanol
  • 700 ⁇ L of a washing liquid 1 NaCl, SDS, isopropanol
  • a washing liquid 2 water 50%, isopropanol 50%
  • step S 5 following movement to, among the housing parts for tips and the like 21 i , the sample tube in which the sample is separately housed, the narrow diameter portion 211 i a of the dispensing tip 211 i is loweringly inserted using the nozzle Z axis transfer mechanism 75 , and, with respect to the suspension of the sample housed in the sample tube, following suspension of the sample within the liquid by repeating the suction and the discharge by raising and lowering the drive plate 536 of the suction-discharge mechanism 53 , the sample suspension is aspirated within the dispensing tip 211 i .
  • the sample suspension is moved along the X axis by means of the nozzle head transfer mechanism 51 to the first liquid housing part of the liquid housing part group 27 i housing the Lysis 1 (enzyme) representing the solution for separating and extracting, and the narrow diameter portion 211 i a of the dispensing tip 211 i is inserted through the hole in the punched film, and the suction and the discharge is repeated in order to stir the sample suspension and the Lysis 1.
  • step S 6 the entire amount of the stirred liquid is aspirated by the dispensing tip 211 i , and incubation is performed by housing it in the reaction vessel 232 i comprising the reaction tubes retained in the housing holes, that is set to 55° C. by means of the constant temperature controller. Consequently, the protein contained in the sample is broken down and made a low molecular weight.
  • the reaction mixture is left in the reaction tube, the dispensing tip 211 i is moved to the second liquid housing part of the liquid housing part group 27 i by means of the nozzle head transfer mechanism 51 , and the entire amount of the liquid housed within the second liquid housing part is aspirated by using the nozzle Z axis transfer mechanism 75 and the suction-discharge mechanism 53 , and it is transferred using the dispensing tip 211 i by means of the nozzle head transfer mechanism 51 , and the reaction solution is discharged within the third liquid housing part by penetrating the hole in the film and inserting the narrow diameter portion.
  • step S 7 the binding buffer solution housed within the third liquid housing part, which represents a separation and extraction solution, and the reaction solution are stirred, the solubilized protein is further dehydrated, and the nucleic acids or the fragments thereof are dispersed within the solution.
  • step S 8 using the dispensing tip 211 i , the narrow diameter portion thereof is inserted into the third liquid housing part by passing through the hole in the film, the entire amount is aspirated and the dispensing tip 211 i is raised by means of the nozzle Z axis transfer mechanism 75 , and the reaction solution is transferred to the fourth liquid housing part, and the magnetic particle suspension housed within the fourth liquid housing part is stirred with the reaction solution.
  • a cation structure in which Na+ ions bind to the hydroxyl groups formed on the surface of the magnetic particles contained within the magnetic particle suspension is formed. Consequently, the negatively charged DNA is captured by the magnetic particles.
  • step S 9 the magnetic particles are adsorbed on the inner wall of the narrow diameter portion 211 i a of the dispensing tip 211 i by approaching the magnet 571 of the magnetic force part 57 to the narrow diameter portion 211 i a of the dispensing tip 211 i .
  • the dispensing tip 211 i is raised by means of the nozzle Z axis transfer mechanism 75 and moved from the fourth liquid housing part to the fifth liquid housing part using the nozzle head transfer mechanism 51 , and the narrow diameter portion 211 i a is inserted by passing through the hole in the film.
  • the dispensing tip 211 i is, by means of the nozzle Z axis transfer mechanism 75 , moved from the fifth liquid housing part to the sixth liquid housing part by means of the nozzle head transfer mechanism 51 .
  • step S 10 the narrow diameter portion 211 i a of the dispensing tip 211 i is inserted by passing through the hole in the film using the nozzle Z axis transfer mechanism 75 .
  • the washing liquid 2 isopropanol housed in the sixth liquid housing part in a state in which the magnetic force within the narrow diameter portion 211 i a is removed by separating the magnet 571 of the magnetic force part 57 from the narrow diameter portion 211 i a of the dispensing tip 211 i
  • the magnetic particles are stirred within the liquid, the NaCl and the SDS is removed, and the protein is washed.
  • the dispensing tip 211 i is, following raising by means of the nozzle Z axis transfer mechanism 75 , moved from the sixth liquid housing part to the seventh liquid housing part in which the distilled water is housed, by means of the nozzle head transfer mechanism 51 .
  • step S 11 the narrow diameter portion 211 i a of the dispensing tip 211 i is lowered through the hole by means of the nozzle Z axis transfer mechanism 75 , and by repeating the suction and the discharge of the distilled water at a slow flow rate in a state where the magnetic force is applied within the narrow diameter portion 211 i a of the dispensing tip 211 i , the washing liquid 2 (isopropanol) is substituted by water and is removed.
  • the washing liquid 2 isopropanol
  • the dispensing tip 211 i is moved to the storage part of the housing parts for tips and the like 21 i in which the dispensing tip 211 i was housed, by means of the nozzle head transfer mechanism 51 , and the dispensing tip 211 i to which magnetic particles are adsorbed, is detached from the nozzle 71 i together with the magnetic particles and dropped into the storage part, using the detaching member 591 of the tip detaching mechanism 59 .
  • step S 12 to step S 15 corresponds to nucleic acid amplification and measurement processing.
  • step S 12 a new dispensing tip 211 i is mounted on the nozzle 71 i , the solution housed within the eighth liquid housing part, which contains nucleic acids and the like, is aspirated, and by transferring it to the PCR tube 231 i in which the solution for amplification 234 i is housed beforehand, and discharging it, it is introduced into the vessel.
  • the nozzle head 50 by means of the nozzle head transfer mechanism 51 , the nozzle 71 i is moved above the sealing lid housing part 25 of the vessel group 20 , which houses the sealing lid 251 i .
  • Mounting is performed by lowering using the nozzle Z axis transfer mechanism 75 and fitting the indentation for linking 258 i on the upper side of the sealing lid 251 to the lower end of the nozzle 71 i .
  • the sealing lid 251 is positioned above the PCR tube 231 i using the nozzle head transfer mechanism 51 , and by lowering the sealing lid 234 i by means of the nozzle Z axis transfer mechanism 75 , it is fitted with the aperture of the wide-mouthed piping part 235 i of the PCR tube 231 i , mountingly sealing it.
  • step S 13 the nozzle head transfer mechanism 51 is instructed by means of an instruction from the measurement control portion 61 , and by moving the nozzle head 50 along the X axis, the linking portion 31 i of the light guide stage 32 is positioned above the PCR tube 231 i , which is mounted with the sealing lid 251 i . Then, by lowering the light guide stage 32 by means of the stage Z axis transfer mechanism 35 , the linking portion 31 i is inserted into the indentation of the sealing lid 251 i , and the lower end thereof is made to make contact with, or adhere to, the bottom surface of the indentation.
  • step S 14 due to an instruction by the nucleic acid processing controller 63 , the temperature controller 29 instructs a temperature control cycle by real-time PCR, such as a cycle in which the PCR tube 231 i is heated for five seconds at 96° C. and heated for 15 seconds at 60° C., to be repeated forty nine times for example.
  • a temperature control cycle by real-time PCR such as a cycle in which the PCR tube 231 i is heated for five seconds at 96° C. and heated for 15 seconds at 60° C., to be repeated forty nine times for example.
  • step S 15 when temperature control at each cycle by the nucleic acid processing controller 63 is started, the measurement control portion 61 determines the start of elongation reaction processing at each cycle, and instructs the continuous or intermittent movement of the connecting end arranging body 30 with respect to the measuring ends 44 j of the measuring device 40 . For the movement speed thereof, it is moved at a speed that is calculated based on the stable light receivable time, the fluorescence lifetime, and the number (twelve in this example) of exclusive regions 20 i . Consequently, the receiving of light from all twelve PCR tubes 231 i within the stable light receivable time becomes completed.
  • step S 16 the measurement control portion 61 determines the moment of each optical connection between the optical fibers (bundles) 33 i of the linking portions 31 i and the first measuring end and the second measuring end of the measuring end 44 , and instructs the receiving of light to the measuring device 40 for example.
  • This measurement is executed with respect to cycles in which exponential amplification is performed, and an amplification curve is obtained based on the measurement, and various analyses are performed based on the amplification curve.
  • the measurement control portion 61 heats the heater 37 built into the light guide stage 32 and prevents the condensation on the sealing lid 251 , and a clear measurement can be performed.
  • FIG. 11 is a perspective view of the front side of a nozzle head 500 of an optical measurement device for a reaction vessel according to a second exemplary embodiment of the present invention, and a perspective view showing a portion thereof cut away.
  • FIG. 12 is a perspective view showing enlarged, the portion of FIG. 11 shown cut away.
  • the PCR tubes 236 i which represent the reaction vessel, have a vessel group in which three or more rows of twelve each are arranged.
  • the nozzle head 500 has: a light guide stage 320 ; twelve linking portions 310 i provided on the light guide stage 320 ; optical fibers (bundle) 33 i that extend from the linking portions 310 i on the rear side; a connecting end arranging body 300 ; a measuring device 400 having a measuring end comprising six types of specific wavelength measurement devices that are aligningly mounted on the light guide stage 320 ; and a sealing lid transport mechanism 125 .
  • the light guide stage 320 has a linking portion arranging body 322 , in which two or more (twelve in this example) linking portions 310 i that are simultaneously linkable with two or more (twelve in this example) reaction vessels 236 i are arranged, that is movable in the horizontal direction (the X axis direction in this example) with respect to the light guide stage 320 . Furthermore, by means of the movement of the linking portion arranging body 322 , without moving the light guide stage 320 , it is linkable with more reaction vessels 236 i (three rows of reaction vessels with twelve per row in this example) than the number of reaction vessels (twelve in this example) that are simultaneously linkable by the linking portion arranging body 322 .
  • the light guide stage 320 has a horizontal plate 320 a , a vertical plate 320 b , and a triangular-shaped support side plate 320 c .
  • the horizontal plate 320 a of the light guide stage 320 is etchingly provided with two or more, or twelve in this example, long holes 321 i that correspond to shielding regions.
  • the measurement device 400 is mounted fixed to the upper edge of the vertical plate 320 b of the light guide stage 322 . Therefore, since the light guide stage 320 is stationary at the time of receiving light, the measurement device 400 is immovably provided with respect to the reaction vessel and the light guide stage 320 .
  • the optical fibers (bundle) 33 i having the end of the linking portion 310 i , separate midway into optical fibers for receiving light (bundle) 331 i and optical fibers for irradiation (bundle) 332 i .
  • the optical fibers for receiving light (bundle) 331 i connect to a second connecting end 341 i
  • the optical fibers for irradiation (bundle) 332 i connect to a first connecting end 342 i , and are arranged as two paths along the Y axis direction on a downwardly facing horizontal plane, which represents an arranging surface on the lower side of the connecting end arranging body 300 .
  • the spacing between adjacent connecting ends on these respective paths is such that they are integrated at approximately half or one-third of the spacing of the linking portions for example.
  • the first connecting ends 342 i are successively connectable with the first measuring ends of the measurement device 400
  • the second connecting ends 341 i are successively connectable with the second measuring ends.
  • the horizontal plate 320 a of the light guide stage 320 is laminatingly provided with a thermal insulation plate 323 formed by a resin and the like, a heater 370 provided on the lower side of the thermal insulation plate 323 for preventing condensation of the sealing lids 253 i by heating the sealing lids 253 i , and a thermally conductive metallic plate 325 provided on the lower side of the heater 370 .
  • Reference symbol 238 is a housing hole that houses the reaction vessels 236 i and is piercingly provided in the cartridge vessel.
  • Reference symbol 239 represents a liquid surface that is controlled at a fixed height within the reaction vessels 236 i .
  • Reference symbol 291 is a temperature controller for PCR.
  • the long holes 321 i that are etchingly provided in the horizontal plate 320 a reach the metallic plate 325 .
  • Holes 326 that are the same size as the apertures for light transmission are piercingly provided above the apertures of the reaction vessels 236 i of the metallic plate 325 of the bottom of the long holes 321 i , and are optically communicated with the bottom of the long holes 321 i .
  • the linking portions 310 i provided on the linking portion arranging body and the front ends of the optical fibers (bundle) 33 i provided in the interior are, as a result of approaching the sealing lids 253 i , linked with the reaction vessels 236 i .
  • FIG. 14 is a drawing showing the various sealing lids 254 i to 257 i according to the second exemplary embodiment, that are mountable on the reaction vessel.
  • the sealing lid 253 i has: a cover plate 251 i a that covers the aperture 236 i a of the reaction vessel 236 i ; a central portion 253 i c that is formed at the center of the cover plate 253 i a and thinner than the periphery, and has an increased light transmittance; and a clamp 253 i b comprising a double annular wall that is provided such that it encloses the central portion 253 i c and protrudes on the lower side, that represents a mounting portion that is mountable to the outer edge portion 236 i b of the aperture of the reaction vessel.
  • the sealing lid 254 i shown in FIG. 14B is formed thick in a convex lens form having a curved surface that expands from a central portion 254 i c toward the vessel exterior. Consequently, the light that is generated within the reaction vessel is made to converge at the end of an optical fiber, or the excitation light from the optical fiber is made to converge at the liquid surface and the like, and the light can be efficiently collected.
  • the sealing lid 255 i shown in FIG. 14C is formed in a convex lens form having a curved surface that expands from a central portion 255 i c toward the vessel exterior, and consequently, the effects demonstrated in FIG. 14B are achieved.
  • the sealing lid 256 i shown in FIG. 14D is formed thick such that it has a curved surface that expands from a central portion 256 i c toward the vessel exterior. Consequently, the effects demonstrated in FIG. 14B are achieved.
  • the sealing lid 257 i shown in FIG. 14E is formed such that it has a curved surface that expands from a central portion 257 i c toward the vessel exterior, and consequently, the effects demonstrated in FIG. 14B are achieved.
  • FIG. 15 shows a sealing lid transporting body 125 according to the second exemplary embodiment.
  • the sealing lid transporting body 125 is one having: a prismatic substrate 128 that is movable in the X axis direction with respect to the vessel group 20 , which has at least three rows of reaction vessels 236 i of twelve per row; one or two or more (twelve in this example) grippers 127 i arranged on the prismatic substrate 128 according to the arrangement of the reaction vessels that grip the cover plate such that, with respect to the sealing lid 253 i (to 256 i ), the lower side is exposed in a state in which the mounting portion is mountable to the reaction vessel; and a bottom plate 126 that is mounted on the lower side of the prismatic substrate 128 .
  • the grippers 127 i have a cavity 124 i that is cut out from the prismatic substrate 128 in an approximate semicircular column shape such that most of the cover plate 253 i a of the sealing lid 253 i is housable. Furthermore, the bottom plate 126 is provided a semicircular hole shaped notch portion 129 i such that the clamp 253 i b , which represents the mounting portion of the sealing lid 253 i , is exposable on the lower side.
  • step S′ 12 to step S′ 16 which correspond to nucleic amplification and measurement processes, are described.
  • step S′ 12 a new dispensing tip 211 i is mounted on the nozzle 71 i , the solution containing nucleic acids and the like, which is housed within the eighth liquid housing part is aspirated, transported to the reaction vessel 236 i in which the solution for amplification 234 i is housed beforehand, and discharged and introduced into the vessel.
  • the sealing lids 253 i from the sealing lid housing part in the sealing lid transporting body 125 in which twelve sealing lids 253 i are housed are simultaneously housed in the cavity 124 i of the grippers 127 i , and gripped.
  • the sealing lid transporting body 125 gripping the sealing lid 253 i is linked with the light guide stage 320 , then by using the stage Z axis transfer mechanism 35 and moving it somewhat upwardly together with the stage 320 and then moving it in the X axis direction, and by transporting it to above the reaction vessels 236 i and lowering it, the twelve sealing lids 253 i are sealed by mounting the clamps 253 i b , which are exposed on the lower side from the sealing lid transporting body 125 , to the PCR tubes 236 i . In the same manner, the rows of the twenty four reaction vessels of the other two rows are successively sealed by the sealing lids.
  • step S′ 13 due to an instruction by the measurement control portion 61 , as a result of instructing the nozzle head transfer mechanism 51 and moving the nozzle head 500 along the X axis, the light guide stage 320 is moved such that it covers the thirty six reaction vessels of the three rows, on which the sealing lids are mounted.
  • step S′ 14 due to an instruction by the nucleic acid processing control portion 63 , the temperature controller 29 instructs a temperature control cycle by real-time PCR, such as a cycle in which the PCR tubes 231 i are heated for five seconds at 96° C. and heated for fifteen seconds at 60° C., to be repeated forty nine times for example.
  • a temperature control cycle by real-time PCR such as a cycle in which the PCR tubes 231 i are heated for five seconds at 96° C. and heated for fifteen seconds at 60° C., to be repeated forty nine times for example.
  • step S′ 15 when temperature control at each cycle is started by the nucleic acid processing control portion 63 , the measurement control portion 61 determines the start of the elongation reaction process at each cycle, moves the linking portion arranging body 322 provided on the light guide stage 320 over the light guide stage 320 , indirectly links the respective linking portions 310 i that are inserted into the long holes 321 i provided on the light guide stage 320 via the reaction vessels and the sealing lids 253 i , and successively receives the light from the reaction vessels while irradiating excitation light from the measurement device to the interior of the reaction vessels.
  • the continuous or intermittent movement of the connecting end arranging body 300 with respect to the respective measuring ends 44 j of the measurement device 400 is instructed.
  • the movement speed thereof is such that movement is performed at a speed that is calculated based on the stable light receivable time, the fluorescence lifetime, the number (three rows of twelve reaction vessels per row in this example) of reaction vessels of the exclusive regions 20 i that are measurable by the light guide stage 320 , and the like. Consequently, by moving the linking portion arranging body 322 over the light guide stage 320 within the stable light receivable time, in this example, measurements can be performed in parallel with respect to thirty six reaction vessels of three rows, with twelve per row.
  • step S′ 16 the measurement control portion 61 determines the moment of the respective optical connections between the optical fibers (bundle) of the linking portions 310 i and the first measuring end and the second measuring end of the measuring end 44 , and instructs the irradiation of excitation light and the receiving of light to the measurement device 400 .
  • FIG. 18 is a drawing showing an example of the position of the optical fiber front ends for receiving light and for irradiation provided to the linking portion in a case where the linking portion is linked at a location other than the aperture of the reaction vessel 236 i .
  • FIG. 18A is a drawing showing a case where the optical fibers (bundle) for receiving light 331 i are in the vicinity of the outer bottom portion of the reaction vessel, and the optical fibers (bundle) for irradiation 332 i are in the vicinity of the outer wall of the reaction vessel.
  • FIG. 18B is a drawing showing a case where the optical fibers (bundle) for receiving light 331 i and the optical fibers (bundle) for irradiation 332 i are in the vicinity of the outer wall of the reaction vessel.
  • FIG. 18C is a drawing showing a case where the optical fibers (bundle) for receiving light 331 i and the optical fibers (bundle) for irradiation 332 i are in the vicinity of the outer bottom portion of the reaction vessel.
  • FIG. 19 represents a block-diagram of an optical measurement device for a reaction vessel 110 according to a second embodiment of the present invention. Since the same reference symbols as the reference symbols used in the first embodiment represent the same objects or similar (only differing by size) objects, the descriptions thereof are omitted.
  • the optical measurement device for a reaction vessel 110 according to the second embodiment differs from the optical measurement device for a reaction vessel 10 according to the first embodiment in the aspect that the nozzle head 150 thereof has a light guide stage 132 that is different from the light guide stage 32 .
  • the light guide stage 132 according to the second embodiment differs from the light guide stage 32 according to the first embodiment in the aspects that it has a plurality (twelve in this example) of linking portions 131 i in which the front ends of optical fibers, which represent two or more light guide portions, which have a flexibility, that optically connect with the interior of the PCR tubes 231 i , and an optical element for collecting light are provided in the interior, and the heat source of the heater 137 , which represents a heating portion for heating the reaction vessels, is provided not to the light guide stage 132 , but to the vessel group 120 or the stage.
  • the sealing lids 251 i are transported not by the nozzles 71 i but by fitting to the linking portions 131 i , and are detached from the linking portions by means of a dedicated sealing lid detaching mechanism 39 . Therefore, the sealing lid control portion 167 , and therefore, the nucleic acid processing control portion 163 and the CPU+program 160 differ from the device 10 according to the first embodiment.
  • the respective exclusive regions 120 i have: a reaction vessel group 23 i ; a liquid housing part group 27 i ; a sealing lid housing part 25 i that houses sealing lids 251 i , which have transparency, that are detachably mounted on the linking portions 131 i provided to the light guide stage 132 ; and housing parts for tips and the like 21 i .
  • the reaction vessel 23 i , the temperature controller 29 , and the heater 137 correspond to the reaction vessel control system 90 .
  • FIG. 20 is a cross-sectional view primarily showing, within the nozzle head 150 according to a first exemplary embodiment of the second embodiment, the transfer mechanism and the suction-discharge mechanism.
  • a sealing lid detaching mechanism 39 is provided that has a comb-shaped detaching member 391 in which a notch portion, which has a semicircular-shaped arch that is approximately equivalent to the diameter of the twelve linking cylinders provided such that they can approach and separate with respect to the linking portion 131 i , is arranged.
  • the detachment of the sealing lids can be performed by utilizing existing mechanisms, the expansion of the device scale, and increases in complexity, can be prevented.
  • the linking portions 131 i fitting within the indentation for linking 253 i of the sealing lids 251 i , they are linked with the PCR tubes 231 i .
  • the linking portion 131 i is indirectly linked with the PCR tube 231 i via the sealing lid 253 , and has an approximately cylinder-shaped linking cylinder 131 a i that is protrudingly provided further in the downward direction than the horizontal plate 132 a of the light guide stage 132 . Furthermore, a circular hole 131 b i having an aperture of a size corresponding to the liquid surface of the liquid that is housed in the narrow-mouthed piping part is piercingly provided in the center portion of the bottom plate of the linking cylinder 131 a i , and the periphery of the bottom plate is provided with a circular edge portion 131 d i that is protrudingly provided below it.
  • a spherical ball lens 381 i that has a diameter corresponding to the inner diameter of the linking cylinder is loosely inserted within the linking cylinder 131 a i and mounted on the circular hole 131 b i .
  • an optical fiber 33 i At a predetermined distance above the ball lens 381 i , an optical fiber 33 i , in which the end is positioned and is covered by a resin-made ferrule 131 c i that passes through the horizontal plate 132 a and reaches the exterior, is provided.
  • the linking cylinder 131 a i , the circular hole 131 b i , the ball lens 381 i , and the optical fiber 33 i bundle are arranged on the same axis in the interior of the linking cylinder 131 a i .
  • the reaction vessel control system 901 has: PCR tubes 231 i that represent reaction vessels, in which target solutions of DNA having a target base sequence, and the like, are stored and reactions, such as amplification, are performed; a heater 137 ; and a temperature controller 291 i for PCR.
  • the heater 137 is laminatingly provided with a heating block 137 c comprising an aluminum plate having a high thermal conductivity, a sheet heater 137 a , and a heat insulator 137 b .
  • the temperature controller 291 for PCR has: a block for temperature control 292 i that makes contact with, and is housable in, the narrow-mouthed piping part 233 i of the PCR tube 231 i which represents the reaction vessel; a Peltier element 293 i ; and a heat sink 294 i .
  • the narrow-mouthed piping part 233 i of the PCR tube 231 i has a lower side wall section 233 a i of the section in which the block for PCR 292 i is making contact and is provided. Furthermore, it has an upper side wall section 235 a i provided on the upper side leaving a spacing with the lower side wall section 233 a i that corresponds to the wall section of the wide-mouthed piping part 235 i that makes contact with the block for heating 137 c of the heater.
  • the nozzle head transfer mechanism 51 is instructed and following movement of the respective linking portions 131 i of the light guide stage 132 to the sealing lid housing parts 25 i , the stage Z axis transfer mechanism 35 is instructed and the sealing lids 251 i are fitted and mounted to the linking portions 131 i .
  • the linking portions 131 i are simultaneously linked with the PCR tubes 231 i .
  • the temperature controller 29 controls the heater 137 such that the upper side wall section 233 b i is heated at a fixed temperature (100° C. for example) that is several degrees, or preferably approximately 5° C., higher than the maximum predetermined temperature (94° C. for example), the sealing lid 251 i fitted to the wide-mouthed piping part 235 i of the PCR tube 231 i is heated, and condensation of the sealing lid can be prevented.
  • a fixed temperature 100° C. for example
  • the maximum predetermined temperature 94° C. for example
  • the upper side wall section 235 a i is separated by a fixed spacing from the lower side wall section 233 a i , in which temperature control is performed, and the upper side wall section 233 a i , which has a smaller surface area than the lower side wall section, is heated by bringing the heat source into contact or into its vicinity. Consequently, the effect of heating the upper side walls section 235 a i is such that the lower surface of the sealing lid 251 i , which is provided at a position near the upper side walls section 235 a i , is heated, and condensation can be prevented.
  • the linking portion 131 i is only making contact with the upper side of the sealing lid 251 i via the circular edge portion 131 d i , the effect of heating is not as much as with respect to the sealing lid 251 i .
  • the lower side wall section 233 a i is temperature controlled to the predetermined temperature using a Peltier element having a heating and cooling function, and furthermore, measurements are simultaneously performed.
  • the linking portion 131 i is made to approach using the detaching member 391 , and then by upwardly moving the light guide stage 132 by means of the stage Z axis transfer mechanism 35 , the sealing lid 251 i is detached from the linking portion and while remaining on the PCR tube 231 i , the linking portion is moved and the linking is released.
  • FIG. 22 is a drawing showing a second exemplary embodiment, and represents a linking portion 131 i in which, in place of the ball lens 381 i , a drum lens 382 i having a lens diameter corresponding to the inner diameter of the linking cylinder 131 a i is loosely inserted within the linking cylinder 131 a i and mounted on the circular hole 131 b i , and is provided such that light is collected at the end of the optical fiber 33 i .
  • FIG. 23 is a drawing showing a third exemplary embodiment, and represents a linking portion 131 i in which, in place of the ball lens 381 i and the like, an aspheric surface lens 383 i having a lens diameter corresponding to the inner diameter of the linking cylinder 131 a i is loosely inserted within the linking cylinder 131 a i and mounted on the circular hole 131 b i , and is provided such that light is collected at the end of the optical fiber 33 i .
  • Reference symbol 391 represents a comb-shaped detaching member of the sealing lid detaching mechanism 39 , and shown is a state in which it is in the vicinity of, or making contact with, the linking portion 131 i .
  • the sealing lid 251 i engages with the sealing lid detaching member 391 and is detached from the linking portion 131 i , but remains still mounted on the PCR tube 231 i .
  • the respective lenses 381 i to 383 i may be made to be loosely mounted within the linking cylinder 131 a i by installing a tube-shaped frame from the upper side.
  • the amplification solution was sealed using a sealing lid for the sealing of the reaction vessel for PCR, it may be made such that, in its place or in combination, it is sealed using a sealing liquid, such as mineral oil. Furthermore, in place of punching by mounting a tip for punching on the nozzles, it is possible to use a punching pin that is driven by the suction-discharge mechanism.
  • a real-time PCR measurement was described in the foregoing descriptions, it is in no way limited to this measurement, and it can be applied to other various measurements in which temperature control is performed.
  • the measurement device is provided to a dispensing device was described, it is not necessarily limited to this. Although only an optical system using optical fibers was described, it is possible to also employ an optical system using a lens system in the interior of the measurement device.
  • the devices described in the respective exemplary embodiments of the present invention, the components that form these devices, or the components that form these components, can be appropriately selected, and can be mutually combined by applying appropriate modifications.
  • the spatial representations within the present application, such as “above”, “below”, “interior”, “exterior”, “X axis”. “Y axis”, and “Z axis” are for illustration only, and are in no way limiting of the specific spatial directions or arrangements of the construction.
  • the present invention is related to fields in which the processing, testing, and analysis of nucleic acids, which primarily includes DNA, RNA, mRNA, rRNA, and tRNA for example, is required, and is related to industrial fields, agricultural fields such as food, agricultural products, and fishery processing, chemical fields, pharmaceutical fields, health care fields such as hygiene, insurance, diseases, and genetics, and scientific fields such as biochemistry or biology for example.
  • the present invention is, in particular, able to be used in processing and analysis that handles various nucleic acids, and the like, such as PCR and real-time PCR.

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EP2711690B1 (en) 2019-10-30
WO2012157685A1 (ja) 2012-11-22
CN103688159A (zh) 2014-03-26
EP2711690A1 (en) 2014-03-26
KR102045090B1 (ko) 2019-12-02
JPWO2012157685A1 (ja) 2014-07-31
US11656179B2 (en) 2023-05-23
US20210349024A1 (en) 2021-11-11
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JP5991967B2 (ja) 2016-09-14
US11099132B2 (en) 2021-08-24
EP2711690A4 (en) 2014-10-22

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