US20020170083A1

US20020170083A1 - Process for preparing an anti-oxidant

Info

Publication number: US20020170083A1
Application number: US09/423,126
Authority: US
Inventors: Aksel Buchter-Larsen; Ian Marcussen
Original assignee: BioLogic AS
Current assignee: BioLogic AS
Priority date: 1997-05-06
Filing date: 1999-11-05
Publication date: 2002-11-14
Anticipated expiration: 2018-05-06
Also published as: GB9926326D0; WO1998050532A2; CA2289861C; GB2340123A8; AU7071798A; EP0980425A2; AU744390B2; GB2340123B; CA2289861A1; WO1998050532A3; GB9709161D0; BR9808729A; CN1554765A; CN1155703C; GB2340123A; JP2001527407A; CN1261915A; US6914175B2

Abstract

A process of preparing an anti-oxidant is described. The process comprises preparing a medium that comprises an anti-oxidant and at least one other component. The process comprises preparing in situ in the medium the anti-oxidant. The anti-oxidant is prepared from either a glucan by use of recombinant DNA techniques and/or by use of a recombinant glucan lyase.

Description

The present invention relates to a process of preparing an anti-oxidant.

An anti-oxidant prevents, inhibits or reduces the oxidation rate of an oxidisable medium. In particular, anti-oxidants are used for the preservation of food, especially when the food is or comprises a fat. Typical chemical anti-oxidants include aromatic amines, substituted phenols and sulphur compounds. Examples of anti-oxidants for food products are polyvinylpolypyrrolidone, dithiothreitol, sulphur dioxide, synthetic γ-tocopherol, δ-tocopherol, L-ascorbic acid, sodium L-ascorbate, calcium L-ascorbate, ascorbyl palmitate, propyl gallate, octyl gallate, dodecyl gallate, lecithin, diphenylamine ethoxyquin and butylated hydroxytoluene. Two commonly used anti-oxidants are GRINDOX 142 (obtained from Danisco A/S) and GRINDOX 1029 (obtained from Danisco A/S).

Typically, anti-oxidants are added to foodstuffs, such as beverages.

For example, anti-oxidants are used in the preparation of alcoholic beverages such as beer, cider, ale etc.. In particular, there is a wide spread use of anti-oxidants in the preparation of wine. In this regard, Butzke and Bisson in Agro-Food-Industry Hi-Tech (July/August 1996 pages 26-30) present a review of wine manufacture.

According to Butzke and Bisson (ibid):

“Wine is the product of the natural fermentation of grape must or juice. In the case of red wine, the skins are present during the initial fermentation to allow extraction of pigment and important flavour and aroma constituents from the skin. The term “must” refers to the crushed whole grapes. In the case of white wine production, skins are removed prior to fermentation and only the juice is retained and processed. . . .

Grapes are harvested and brought directly to the winery from the field. The grapes are then crushed at the winery and the must either transferred to a tank for fermentation (red wine) or pressed to separate juice from the skin and seeds (white wine). In this latter case, the juice is then transferred to a tank for fermentation. The tanks may either be inoculated with a commercial wine strain of Saccharomyces or allowed to undergo a natural or uninoculated fermentation. In a natural fermentation, Saccharomyces cells are greatly outnumbered by wild (non-Saccharomyces) yeast and bacteria at the beginning of fermentation. By the end of the fermentation Saccharomyces is the dominant and most often only organism isolateable. Inoculation with a commercial wine strain or with fermenting juice or must changes the initial ratio of the numbers of different microorganisms, allowing Saccharomyces to dominate the fermentation much earlier.

The metabolic activity of microorganisms in wine results in the production of aroma and flavour compounds some of which are highly objectionable to the consumer and all of which are distinct from the compounds responsible for the varietal character of the wine. . . . Sulphur dioxide addition prevents chemical oxidation reactions and in this sense is an important stabilizer of the natural grape aroma and flavour. It may be added to the must or juice to preserve flavour, not necessarily as an antimicrobial agent. However, its antimicrobial activity must be considered when choosing a strain to be genetically modified for wine production.”

Hence, potentially harmful chemicals—such as sulphur dioxide—are used in wine manufacture.

The present invention seeks to overcome any problems associated with the prior art methods of preparing foodstuffs with antioxidants.

According to a first aspect of the present invention there is provided a process of preparing a medium that comprises an anti-oxidant and at least one other component, the process comprising preparing in situ in the medium the anti-oxidant; and wherein the anti-oxidant is prepared from a glucan by use of recombinant DNA techniques.

According to a second aspect of the present invention there is provided a process of preparing a medium that comprises an anti-oxidant and at least one other component, the process comprising preparing in situ in the medium the anti-oxidant; and wherein the anti-oxidant is prepared by use of a recombinant glucan lyase.

According to a third aspect of the present invention there is provided a medium prepared by the process according to the present invention.

Other aspects of the present invention include:

Use of anhydrofructose as an anti-oxidant for a medium comprising at least one other component, wherein the anhydrofructose is prepared in situ in the medium.

Use of anhydrofructose as a means for imparting or improving stress tolerance in a plant, wherein the anhydrofructose is prepared in situ in the plant.

Use of anhydrofructose as a means for imparting or improving the transformation of a grape, wherein the anhydrofructose is prepared in situ in the grape.

Use of anhydrofructose as a means for increasing antioxidant levels in a foodstuff (preferably a fruit or vegetable, more preferably a fresh fruit or a fresh vegetable), wherein the anhydrofructose is prepared in situ in the foodstuff.

Use of anhydrofructose as a pharmaceutical in a foodstuff, wherein the anhydrofructose is prepared in situ in the foodstuff.

A method of administering a foodstuff comprising anhydrofructose, wherein the anhydrofructose is in a pharmaceutically acceptable amount and acts as a pharmaceutical; and wherein the anhydrofructose has been prepared in situ in the foodstuff.

Use of anhydrofructose as a nutraceutical in a foodstuff, wherein the anhydrofructose is prepared in situ in the foodstuff.

A method of administering a foodstuff comprising anhydrofructose, wherein the anhydrofructose is in a nutraceutically acceptable amount and acts as a nutraceutical; and wherein the anhydrofructose has been prepared in situ in the foodstuff.

Use of glucan lyase as a means for imparting or improving stress tolerance in a plant, wherein the glucan lyase is prepared in situ in the plant.

Use of glucan lyase as a means for imparting or improving the transformation of a grape, wherein the glucan lyase is prepared in situ in the grape.

Use of glucan lyase as a means for increasing antioxidant levels in a foodstuff (preferably a fruit or vegetable, more preferably a fresh fruit or a fresh vegetable), wherein the glucan lyase is prepared in situ in the foodstuff.

Use of glucan lyase in the preparation of a pharmaceutical in a foodstuff, wherein the glucan lyase is prepared in situ in the foodstuff.

A method of administering a foodstuff comprising an antioxidant, wherein the antioxidant is in a pharmaceutically acceptable amount and acts as a pharmaceutical; and wherein the antioxidant has been prepared in situ in the foodstuff from a glucan lyase.

Use of glucan lyase in the preparation of a nutraceutical in a foodstuff, wherein the glucan lyase is prepared in situ in the foodstuff.

A method of administering a foodstuff comprising an antioxidant, wherein the antioxidant is in a nutraceutically acceptable amount and acts as a nutraceutical; and wherein the antioxidant has been prepared in situ in the foodstuff from a glucan lyase.

Use of a nucleotide sequence coding for a glucan lyase as a means for imparting or improving stress tolerance in a plant, wherein the nucleotide sequence is expressed in situ in the plant.

Use of a nucleotide sequence coding for a glucan lyase as a means for imparting or improving the transformation of a grape, wherein the nucleotide sequence is expressed in situ in the grape.

Use of a nucleotide sequence coding for a glucan lyase as a means for increasing antioxidant levels in a foodstuff (preferably a fruit or vegetable, more preferably a fresh fruit or a fresh vegetable), wherein the nucleotide sequence is expressed in situ in the foodstuff.

Use of a nucleotide sequence coding for a glucan lyase as a means for creating a pharmaceutical in a foodstuff, wherein the nucleotide sequence is expressed in situ in the foodstuff.

A method of administering a foodstuff comprising an antioxidant, wherein the antioxidant is in a pharmaceutically acceptable amount and acts as a pharmaceutical; and wherein the antioxidant has been prepared in situ in the foodstuff by means of a nucleotide sequence coding for a glucan lyase.

Use of a nucleotide sequence coding for a glucan lyase as a means for creating a nutraceutical in a foodstuff, wherein the nucleotide sequence is expressed in situ in the foodstuff.

A method of administering a foodstuff comprising an antioxidant, wherein the antioxidant is in a nutraceutically acceptable amount and acts as a nutraceutical; and wherein the antioxidant has been prepared in situ in the foodstuff by means of a nucleotide sequence coding for a glucan lyase.

The term “nutraceutical” means a compound that is capable of acting as a nutrient (i.e. it is suitable for, for example, oral administration) as well as being capable of exhibiting a pharmaceutical effect and/or cosmetic effect.

In contrast to the usual practice of adding anti-oxidants media, such as foodstuffs, we have now found that particular anti-oxidants can be prepared in situ in the medium.

The in situ preparation of anti-oxidants is particularly advantageous in that less, or even no, additional anti-oxidants need be added to the medium, such as a food product.

The present invention is also believed to be advantageous as it provides a means of improving stress tolerance of plants.

The present invention is also advantageous as it provides a means for viably transforming grape.

The present invention is further advantageous in that it enables the levels of antioxidants in foodstuffs to be elevated. This may have beneficial health implications. In this regard, recent reports (e.g. Biotechnology Newswatch Apr. 21 1997 “ Potent Antioxidants, as strong as those in fruit, found in coffee” by Marjorie Shaffer) suggest that antioxidants have a pharmaceutical benefit, for example in preventing or suppressing cancer formation.

General in situ preparation of antioxidants in plants has been previously reviewed by Badiani et al in Agro-Food-Industry Hi-Tech (March/April 1996 pages 21-26). It is to be noted, however, that this review does not mention preparing in situ antioxidants from a glucan, let alone by use of a recombinant glucan lyase.

Preferably, the glucan comprises α-1,4 links.

Preferably, the glucan is starch or a unit of starch.

Preferably, the glucan is a substrate for a recombinant enzyme such that contact of the glucan with the recombinant enzyme yields the anti-oxidant.

Preferably, the enzyme is a glucan lyase.

Preferably, the enzyme is an α-1,4-glucan lyase.

Preferably, the enzyme comprises any one of the sequences shown as SEQ ID Nos 1-6, or a variant, homologue or fragment thereof.

Preferably, the enzyme is any one of the sequences shown as SEQ ID Nos 1-6.

Preferably, the enzyme is encoded by a nucleotide sequence comprising any one of the sequences shown as SEQ ID Nos 7-12, or a variant, homologue or fragment thereof.

Preferably, the enzyme is encoded by a nucleotide sequence having any one of the sequences shown as SEQ ID Nos 7-12.

Preferably, the anti-oxidant is anhydrofructose.

Preferably, the anti-oxidant is 1,5-D-anhydrofructose.

Preferably, the medium is, or is used in the preparation of, a foodstuff.

Preferably, the foodstuff is a beverage.

Preferably, the beverage is an alcoholic beverage.

Preferably, the beverage is a wine.

Preferably, the anti-oxidant is prepared in situ in the component and is then released into the medium.

Preferably, the component is a plant or a part thereof.

Preferably, the component is all or part of a cereal or a fruit.

Preferably, the component is all or part of a grape.

The medium may be used as or in the preparation of a foodstuff, which includes beverages. In the alternative, the medium may be for use in polymer chemistry. In this regard, the in situ generated anti-oxidants could therefore act as oxygen scavengers during, for example, the synthesis of polymers, such as the synthesis of bio-degradable plastic.

In accordance with the present invention, the anti-oxidant (preferably anhydrofructose) is prepared in situ in the medium. In other words, the antioxidant (preferably anhydrofructose) that is prepared in situ in the medium is used as an anti-oxidant in the medium. In one emdodiment, the antioxidant (preferably anhydrofructose) that is prepared in situ in the medium is used as the main anti-oxidant in the medium.

The term “in situ in the medium” as used herein includes the anti-oxidant being prepared by action of a recombinant enzyme expressed by the component on a glucan—which glucan is a substrate for the enzyme. The term also includes the anti-oxidant being prepared by action of a recombinant enzyme expressed by the component on a glucan—which glucan is a substrate for the enzyme—within the component and the subsequent generation of the anti-oxidant. The term also includes the recombinant enzyme being expressed by the component and then being released into the medium, which enzyme acts on a glucan—which glucan is a substrate for the enzyme—present in the medium to form the anti-oxidant in the medium. The term also covers the presence or addition of another component to the medium, which component then expresses a recombinant nucleotide sequence which results in exposure of part or all of the medium to an anti-oxidant, which anti-oxidant may be a recombinant enzyme or a recombinant protein expressed and released by the other component, or it may be a product of a glucan—which glucan is a substrate for the enzyme—within the medium that has been exposed to the recombinant enzyme or the recombinant protein.

The term “by use of recombinant DNA techniques” as used herein includes the anti-oxidant being any obtained by use of a recombinant enzyme or a recombinant protein, which enzyme or protein acts on the glucan. The term also includes the anti-oxidant being any obtained by use of an enzyme or protein, which enzyme or protein acts on a recombinant glucan.

The term “starch” in relation to the present invention includes native starch, degraded starch, modified starch, including its components amylose and amylopectin, and the glucose units thereof.

The terms “variant”, “homologue” or “fragment” in relation to the enzyme include any substitution of, variation of, modification of, replacement of, deletion of or addition of one (or more) amino acid from or to the sequence providing the resultant amino acid sequence has α-glucan lyase activity, preferably having at least the same activity of any one of the enzymes shown as SEQ ID No. 1-6. In particular, the term “homologue” covers homology with respect to structure and/or function providing the resultant enzyme has α-glucan lyase activity. With respect to sequence homology, preferably there is at least 75%, more preferably at least 85%, more preferably at least 90% homology to any one of the sequences shown as SEQ ID No.s 1-6. More preferably there is at least 95%, more preferably at least 98%, homology to any one of the sequences shown as SEQ ID No. 1-6.

The terms “variant”, “homologue” or “fragment” in relation to the nucleotide sequence coding for the enzyme include any substitution of, variation of, modification of, replacement of, deletion of or addition of one (or more) nucleic acid from or to the sequence providing the resultant nucleotide sequence codes for an enzyme having α-glucan lyase activity, preferably having at least the same activity of any one of the enzymes shown as SEQ ID No. 1-6. In particular, the term “homologue” covers homology with respect to structure and/or function providing the resultant nucleotide sequence codes for an enzyme having α-glucan lyase activity. With respect to sequence homology, preferably there is at least 75%, more preferably at least 85%, more preferably at least 90% homology to any one of the sequences shown as SEQ ID No. 7-12. More preferably there is at least 95%, more preferably at least 98%, homology to any one of the sequences shown as SEQ ID No. 7-12.

The above terms are synonymous with allelic variations of the sequences.

The present invention also covers nucleotide sequences that can hybridise to the nucleotide sequence of the present invention.

The term “nucleotide” in relation to the present invention includes cDNA.

According to the present invention there is therefore provided a method of preparing in situ in an oxidisable medium an anti-oxidant. In a preferred embodiment, the anti-oxidant is anhydrofructose, more preferably 1,5-D-anhydrofructose. 1,5-D-anhydrofructose has been chemically synthesised (Lichtenthaler in Tetrahedron Letters Vol 21 pp 1429-1432). 1,5-D-anhydrofructose is further discussed in WO 95/10616, WO 95/10618 and GB-B-2294048.

The main advantages of using 1,5-D-anhydrofructose as an anti-oxidant are that it is a natural product, it is non-metabolisable, it is easy to manufacture, it is water-soluble, and it is generally non-toxic.

According to WO 95/10616, WO 95/10618 and GB-B-2294048, 1,5-D-anhydrofructose may be prepared by the enzymatic modification of substrates based on α-1,4-glucan by use of the enzyme α-1,4-glucan lyase. A typical α-1,4-glucan based substrate is starch.

Today, starches have found wide uses in industry mainly because they are cheap raw materials. There are many references in the art to starch. For example, starch is discussed by Salisbury and Ross in Plant Physiology (Fourth Edition, 1991, Published by Wadsworth Publishing Company—especially section 11.7). In short, however, starch is one of the principal energy reserves of plants. It is often found in colourless plastids (amyloplasts), in storage tissue and in the stroma of chloroplasts in many plants. Starch is a polysaccharide carbohydrate. It comprises two main components: amylose and/or amylopectin. Both amylose and/or amylopectin consist of straight chains of α(1,4)-linked glucose units (ie glycosyl residues) but in addition amylopectin includes α(1,6) branched glucose units.

Some of the glucan lyases discussed in WO 95/10616 and WO 95/10618 that are suitable for producing 1,5-D-anhydrofructose from starch are shown as SEQ I.D. No.s 1-4. Some of the glucan lyases discussed in GB-B-2294048 that are suitable for producing 1,5-D-anhydrofructose from starch are shown as SEQ I.D. No.s 5-6.

Some of the nucleotide sequences coding for glucan lyases discussed in WO 95/10616 and WO 95/10618 that are suitable for producing 1,5-D-anhydrofructose from starch are shown as SEQ I.D. No.s 7-10. Some of the nucleotide sequences coding for glucan lyases discussed in GB-B-2294048 that are suitable for producing 1,5-D-anhydrofructose from starch are shown as SEQ I.D. No.s 11-12.

A further glucan lyase is discussed in WO 94/09122.

The recombinant nucleotide sequences coding for the enzyme may be cloned from sources such as a fungus, preferably Morchella costata or Morchella vulgaris, or from a fungally infected algae, preferably Gracilariopsis lemaneiformis, or from algae lone, preferably Gracilariopsis lemaneiformis.

In a preferred embodiment, the 1,5-D-anhydrofructose is prepared in situ by treating an α-1,4-glucan with a recombinant α-1,4-glucan lyase, such as any one of those presented as SEQ I.D. No.s 1-6.

Detailed commentary on how to prepare the enzymes shown as sequences SEQ I.D. No.s 1-6 may be found in the teachings of WO 95/10616, WO 95/10618 and GB-B-2294048. Likewise, detailed commentary on how to isolate and clone the nucleotide sequences SEQ I.D. No.s 7-12 may be found in the teachings of WO 95/10616, WO 95/10618 and GB-B-2294048.

If the glucan contains links other than and in addition to the α-1,4- links the recombinant α-1,4-glucan lyase can be used in conjunction with a suitable reagent that can break the other links—such as a recombinant hydrolase—preferably a recombinant glucanohydrolase.

General teachings of recombinant DNA techniques may be found in Sambrook,J., Fritsch, E. F., Maniatis T. (Editors) Molecular Cloning. A laboratory manual. Second edition. Cold Spring Harbour Laboratory Press. New York 1989.

In order to express a nucleotide sequence, the host organism can be a prokaryotic or a eukaryotic organism. Examples of suitable prokaryotic hosts include E. coli and Bacillus subtilis. Teachings on the transformation of prokaryotic hosts is well documented in the art, for example see Sambrook et al (Molecular Cloning: A Laboratory Manual, 2nd edition, 1989, Cold Spring Harbor Laboratory Press). If a prokaryotic host is used then the gene may need to be suitably modified before transformation—such as by removal of introns.

In one embodiment, the host organism can be of the genus Aspergillus, such as Aspergillus niger. A transgenic Aspergillus can be prepared by following the teachings of Rambosek, J. and Leach, J. 1987 (Recombinant DNA in filamentous fungi: Progress and Prospects. CRC Crit. Rev. Biotechnol. 6:357-393), Davis R. W. 1994 (Heterologous gene expression and protein secretion in Aspergillus. In: Martinelli S. D., Kinghorn J. R.( Editors) Aspergillus: 50 years on. Progress in industrial microbiology vol 29. Elsevier Amsterdam 1994. pp 525-560), Ballance, D. J. 1991 (Transformation systems for Filamentous Fungi and an Overview of Fungal Gene structure. In: Leong, S. A., Berka R. M. (Editors) Molecular Industrial Mycology. Systems and Applications for Filamentous Fungi. Marcel Dekker Inc. New York 1991, pp 1-29) and Turner G. 1994 (Vectors for genetic manipulation. In: Martinelli S. D., Kinghorn J. R.(Editors) Aspergillus: 50 years on. Progress in industrial microbiology vol 29. Elsevier Amsterdam 1994. pp. 641-666). However, the following commentary provides a summary of those teachings for producing transgenic Aspergillus.

For almost a century, filamentous fungi have been widely used in many types of industry for the production of organic compounds and enzymes. For example, traditional japanese koji and soy fermentations have used Aspergillus sp. Also, in this century Aspergillus niger has been used for production of organic acids particular citric acid and for production of various enzymes for use in industry.

There are two major reasons why filamentous fungi have been so widely used in industry. First filamentous fungi can produce high amounts of extracelluar products, for example enzymes and organic compounds such as antibiotics or organic acids. Second filamentous fungi can grow on low cost substrates such as grains, bran, beet pulp etc. The same reasons have made filamentous fungi attractive organisms as hosts for heterologous expression of recombinant enzymes according to the present invention.

In order to prepare the transgenic Aspergillus, expression constructs are prepared by inserting a requisite nucleotide sequence into a construct designed for expression in filamentous fungi.

Several types of constructs used for heterologous expression have been developed. These constructs can contain a promoter which is active in fungi. Examples of promoters include a fungal promoter for a highly expressed extracelluar enzyme, such as the glucoamylase promoter or the α-amylase promoter. The nucleotide sequence can be fused to a signal sequence which directs the protein encoded by the nucleotide sequence to be secreted. Usually a signal sequence of fungal origin is used. A terminator active in fungi ends the expression system.

Another type of expression system has been developed in fungi where the nucleotide sequence can be fused to a smaller or a larger part of a fungal gene encoding a stable protein. This can stabilize the protein encoded by the nucleotide sequence. In such a system a cleavage site, recognized by a specific protease, can be introduced between the fungal protein and the protein encoded by the nucleotide sequence, so the produced fusion protein can be cleaved at this position by the specific protease thus liberating the protein encoded by the nucleotide sequence. By way of example, one can introduce a site which is recognized by a KEX-2 like peptidase found in at least some Aspergilli. Such a fusion leads to cleavage in vivo resulting in protection of the expressed product and not a larger fusion protein.

Heterologous expression in Aspergillus has been reported for several genes coding for bacterial, fungal, vertebrate and plant proteins. The proteins can be deposited intracellularly if the nucleotide sequence is not fused to a signal sequence. Such proteins will accumulate in the cytoplasm and will usually not be glycosylated which can be an advantage for some bacterial proteins. If the nucleotide sequence is equipped with a signal sequence the protein will accumulate extracelluarly.

With regard to product stability and host strain modifications, some heterologous proteins are not very stable when they are secreted into the culture fluid of fungi. Most fungi produce several extracelluar proteases which degrade heterologous proteins. To avoid this problem special fungal strains with reduced protease production have been used as host for heterologous production.

For the transformation of filamentous fungi, several transformation protocols have been developed for many filamentous fungi (Ballance 1991, ibid). Many of them are based on preparation of protoplasts and introduction of DNA into the protoplasts using PEG and Ca ²⁺ions. The transformed protoplasts then regenerate and the transformed fungi are selected using various selective markers. Among the markers used for transformation are a number of auxotrophic markers such as argB, trpC, niaD and pyrG, antibiotic resistance markers such as benomyl resistance, hygromycin resistance and phleomycin resistance. A commonly used transformation marker is the amdS gene of A. nidulans which in high copy number allows the fungus to grow with acrylamide as the sole nitrogen source.

In another embodiment the transgenic organism can be a yeast. In this regard, yeast have also been widely used as a vehicle for heterologous gene expression. The species Saccharomyces cerevisiae has a long history of industrial use, including its use for heterologous gene expression. Expression of heterologous genes in Saccharomyces cerevisiae has been reviewed by Goodey et al (1987, Yeast Biotechnology, D R Berry et al, eds, pp 401-429, Allen and Unwin, London) and by King et al (1989, Molecular and Cell Biology of Yeasts, E F Walton and G T Yarronton, eds, pp 107-133, Blackie, Glasgow).

For several reasons Saccharomyces cerevisiae is well suited for heterologous gene expression. First, it is non-pathogenic to humans and it is incapable of producing certain endotoxins. Second, it has a long history of safe use following centuries of commercial exploitation for various purposes. This has led to wide public acceptability. Third, the extensive commercial use and research devoted to the organism has resulted in a wealth of knowledge about the genetics and physiology as well as large-scale fermentation characteristics of Saccharomyces cerevisiae.

A review of the principles of heterologous gene expression in Saccharomyces cerevisiae and secretion of gene products is given by E Hinchcliffe E Kenny (1993, “Yeast as a vehicle for the expression of heterologous genes”, Yeasts, Vol 5, Anthony H Rose and J Stuart Harrison, eds, 2nd edition, Academic Press Ltd.).

Several types of yeast vectors are available, including integrative vectors, which require recombination with the host genome for their maintenance, and autonomously replicating plasmid vectors.

In order to prepare the transgenic Saccharomyces, expression constructs are prepared by inserting the nucleotide sequence into a construct designed for expression in yeast. Several types of constructs used for heterologous expression have been developed. The constructs contain a promoter active in yeast fused to the nucleotide sequence, usually a promoter of yeast origin, such as the GAL1 promoter, is used. Usually a signal sequence of yeast origin, such as the sequence encoding the SUC2 signal peptide, is used. A terminator active in yeast ends the expression system.

For the transformation of yeast several transformation protocols have been developed. For example, a transgenic Saccharomyces can be prepared by following the teachings of Hinnen et al (1978, Proceedings of the National Academy of Sciences of the USA 75, 1929); Beggs, J D (1978, Nature, London, 275, 104); and Ito, H et al (1983, J Bacteriology 153, 163-168).

The transformed yeast cells are selected using various selective markers. Among the markers used for transformation are a number of auxotrophic markers such as LEU2, HIS4 and TRP1, and dominant antibiotic resistance markers such as aminoglycoside antibiotic markers, eg G418.

Another host organism is a plant. In this regard, the art is replete with references for preparing transgenic plants. Two documents that provide some background commentary on the types of techniques that may be employed to prepare transgenic plants are EP-B-0470145 and CA-A-2006454—some of which commentary is presented below.

The basic principle in the construction of genetically modified plants is to insert genetic information in the plant genome so as to obtain a stable maintenance of the inserted genetic material.

Several techniques exist for inserting the genetic information, the two main principles being direct introduction of the genetic information and introduction of the genetic information by use of a vector system. A review of the general techniques may be found in articles by Potrykus (Annu Rev Plant Physiol Plant Mol Biol [1991] 42:205-225) and Christou (Agro-Food-Industry Hi-Tech March/April 1994 17-27).

Thus, in one aspect, the present invention relates to a vector system which carries a recombinant nucleotide sequence and which is capable of introducing the nucleotide sequence into the genome of an organism, such as a plant, and wherein the nucleotide sequence is capable of preparing in situ an anti-oxidant.

The vector system may comprise one vector, but it can comprise at least two vectors. In the case of two vectors, the vector system is normally referred to as a binary vector system. Binary vector systems are described in further detail in Gynheung An et al. (1980), Binary Vectors, Plant Molecular Biology Manual A3, 1-19.

One extensively employed system for transformation of plant cells with a given promoter or nucleotide sequence or construct is based on the use of a Ti plasmid from Agrobacterium tumefaciens or a Ri plasmid from Agrobacterium rhizogenes (An et al. (1986), Plant Physiol. 81, 301-305 and Butcher D. N. et al. (1980), Tissue Culture Methods for Plant Pathologists, eds.: D. S. Ingrams and J. P. Helgeson, 203-208).

Several different Ti and Ri plasmids have been constructed which are suitable for the construction of the plant or plant cell constructs described above.

The nucleotide sequence of the present invention should preferably be inserted into the Ti-plasmid between the border sequences of the T-DNA or adjacent a T-DNA sequence so as to avoid disruption of the sequences immediately surrounding the T-DNA borders, as at least one of these regions appear to be essential for insertion of modified T-DNA into the plant genome.

As will be understood from the above explanation, if the organism is a plant, then the vector system of the present invention is preferably one which contains the sequences necessary to infect the plant (e.g. the vir region) and at least one border part of a T-DNA sequence, the border part being located on the same vector as the genetic construct. Preferably, the vector system is an Agrobacterium tumefaciens Ti-plasmid or an Agrobacterium rhizogenes Ri-plasmid or a derivative thereof, as these plasmids are well-known and widely employed in the construction of transgenic plants, many vector systems exist which are based on these plasmids or derivatives thereof.

In the construction of a transgenic plant the nucleotide sequence or construct or vector of the present invention may be first constructed in a microorganism in which the vector can replicate and which is easy to manipulate before insertion into the plant. An example of a useful microorganism is E. coli., but other microorganisms having the above properties may be used. When a vector of a vector system as defined above has been constructed in E. coli. it is transferred, if necessary, into a suitable Agrobacterium strain, e.g. Agrobacterium tumefaciens. The Ti-plasmid harbouring the first nucleotide sequence or construct of the invention is thus preferably transferred into a suitable Agrobacterium strain, e.g. A. tumefaciens, so as to obtain an Agrobacterium cell harbouring the promoter or nucleotide sequence or construct of the invention, which DNA is subsequently transferred into the plant cell to be modified.

As reported in CA-A-2006454, a large number of cloning vectors are available which contain a replication system in E. coli and a marker which allows a selection of the transformed cells. The vectors contain for example pBR322, the pUC series, the M13 mp series, pACYC 184 etc. In this way, the promoter or nucleotide or construct of the present invention can be introduced into a suitable restriction position in the vector. The contained plasmid is used for the transformation in E.coli. The E. coli cells are cultivated in a suitable nutrient medium and then harvested and lysed. The plasmid is then recovered and then analysed—such as by any one or more of the following techniques: sequence analysis, restriction analysis, electrophoresis and further biochemical-molecular biological methods. After each manipulation, the used DNA sequence can be restricted or selectively amplified by PCR techniques and connected with the next DNA sequence. Each sequence can be cloned in the same or different plasmid.

After each introduction method of the nucleotide sequence or construct or vector according to the present invention in the plants the presence and/or insertion of further DNA sequences may be necessary. If, for example, for the transformation the Ti- or Ri-plasmid of the plant cells is used, at least the right boundary and often however the right and the left boundary of the Ti- and Ri-plasmid T-DNA, as flanking areas of the introduced genes, can be connected. The use of T-DNA for the transformation of plant cells has been intensively studied and is described in EP-A-120516; Hoekema, in: The Binary Plant Vector System Offset-drukkerij Kanters B. B., Alblasserdam, 1985, Chapter V; Fraley, et al., Crit. Rev. Plant Sci., 4:1-46; and An et al., EMBO J. (1985) 4:277-284.

Direct infection of plant tissues by Agrobacterium is a simple technique which has been widely employed and which is described in Butcher D. N. et al. (1980), Tissue Culture Methods for Plant Pathologists, eds.: D. S. Ingrams and J. P. Helgeson, 203-208. For further teachings on this topic see Potrykus (Annu Rev Plant Physiol Plant Mol Biol [1991] 42:205-225) and Christou (Agro-Food-Industry Hi-Tech March/April 1994 17-27). With this technique, infection of a plant may be done on a certain part or tissue of the plant, i.e. on a part of a leaf, a root, a stem or another part of the plant.

Typically, with direct infection of plant tissues by Agrobacterium carrying the first nucleotide sequence or the construct, a plant to be infected is wounded, e.g. by cutting the plant with a razor or puncturing the plant with a needle or rubbing the plant with an abrasive. The wound is then inoculated with the Agrobacterium. The inoculated plant or plant part is then grown on a suitable culture medium.

When plant cells are constructed, these cells are grown and, optionally, maintained in a medium according to the present invention following well-known tissue culturing methods—such as by culturing the cells in a suitable culture medium supplied with the necessary growth factors such as amino acids, plant hormones, vitamins, etc, but wherein the culture medium comprises a component according to the present invention. Regeneration of the transformed cells into genetically modified plants may be accomplished using known methods for the regeneration of plants from cell or tissue cultures, for example by selecting the transformed shoots and by subculturing the shoots on a medium containing the appropriate nutrients, plant hormones, etc.

Further teachings on plant transformation may be found in EP-A-0449375.

Reference may even be made to Spngstad et al (1995 Plant Cell Tissue Organ Culture 40 pp 1-15) as these authors present a general overview on transgenic plant construction.

In one embodiment, the plant is a grapevine. There are a number of teachings in the art on how to prepare transformed grapevines. For example, reference may be made to Baribault et al (J Exp Bot 41 (229) 1990 1045-1050), Baribault et al (Plant Cell Rep 8 (3) 1989 137-140), Scorza et al (J Am Soc Horticultural Science 121 (4) 1996 616-619), Kikkert et al (Plant Cell Reports 15 (5) 1996 311-316), Golles et al (Acta Hortic 1997 vol 447 Number: Horticultural Biotechnology in Vitro Culture and Breeding Pages 265-275), Gray and Scorza (WO-A-97/49277) and Simon Robinson et al (Conference abstracts and paper presented in Biotechnology—Food and Health for the 21st Century, Adelaide, Australia, 1998). By way of example Robinson et al (ibid) disclose a method for transforming grapevine wherein somatic embryos are induced on callus formed from another tissue and Agrobacterium infection is used to transfer target genes into the embryo tissue.

Further reference may be made to the teachings of Andrew Walker in Nature Biotechnology (Vol 14, May 1996, page 582) who states that:

“The grape, one of the most important fruit plants in the world, has been difficult to engineer because of its high levels of tannins and phenols, which interfere with cell culture and transformation; the compounds oxidize quickly and promote the decay of grape cells.”

In that same edition of Nature Biotechnology, Perl et al (pages 624-628) report on the use of the combination of polyvinylpolypyrrolidone and dithiothreitol to improve the viability of grape transformation during Agrobacterium infection.

Hence, the present invention provides an alternative means for transforming grape. In this regard, the antioxidant that is prepared in situ by a grape transformed in accordance with the present invention improves the viability of grape transformation during Agrobacterium infection.

Thus, according to one aspect of the present invention, there is provided the use of an antioxidant prepared in situ in order to effectively transform a grape.

In some instances, it is desirable for the recombinant enzyme or protein to be easily secreted into the medium to act as or to generate an anti-oxidant therein. In such cases, the DNA encoding the recombinant enzyme is fused to inter alia an appropriate signal sequence, an appropriate promoter and an appropriate terminator from the chosen host.

For example, for expression in Aspergillus niger the gpdA (from the Glyceraldehyde-3-phosphate dehydrogenase gene of Aspergillus nidulans) promoter and signal sequence is fused to the 5′ end of the DNA encoding the mature lyase. The terminator sequence from the A. niger trpC gene is placed 3′ to the gene (Punt, P. J. et al 1991—(1991): J. Biotech. 17, 19-34). This construction is inserted into a vector containing a replication origin and selection origin for E. coli and a selection marker for A. niger. Examples of selection markers for A. niger are the amdS gene, the argB gene, the pyrG gene, the hygB gene, the BmlR gene which all have been used for selection of transformants. This plasmid can be transformed into A. niger and the mature lyase can be recovered from the culture medium of the transformants. Eventually the construction could be transformed into a protease deficient strain to reduce the proteolytic degradation of the lyase in the medium (Archer D. B. et al 1992—Biotechnol. Lett. 14, 357-362).

In addition, and as indicated above, aside from using Aspergillus niger as the host, there are other industrial important microorganisms which could be used as expression systems. Examples of these other hosts include: Aspergillus oryzae, Aspergillus sp., Trichoderma sp., Saccharomyces cerevisiae, Kluyveromyces sp., Hansenula sp., Pichia sp., Bacillus subtilis, B. amyloliquefaciens, Bacillus sp., Streptomyces sp. or E. coli.

In accordance with the present invention, a suitable marker or selection means may be introduced into the host that is to be transformed with the nucleotide sequence. Examples of suitable markers or selection means are described in any one of WO-A-93/05163, WO-A-94/20627, GB patent application No. 9702591.0 (filed Feb. 7, 1997), GB patent application No. 9702576.1 (filed Feb. 7, 1997), GB patent application No. 9702539.9 (filed Feb. 7, 1997), GB patent application No. 9702510.0 (filed Feb. 7, 1997) and GB patent application No. 9702592.8 (filed Feb. 7, 1997).

In summation, the present invention relates to a process comprising preparing a medium that comprises an anti-oxidant and at least one other component, the process comprising preparing in situ in the medium the anti-oxidant; and wherein the anti-oxidant is prepared from a glucan by use of recombinant DNA techniques and/or the anti-oxidant is prepared by use of a recombinant glucan lyase.

In a preferred embodiment, the present invention relates to a process a process of preparing a medium that comprises an anti-oxidant and at least one other component, the process comprising preparing in situ in the medium the anti-oxidant; and wherein the anti-oxidant is prepared from a glucan by use of a recombinant glucan lyase.

In a more preferred embodiment, the present invention relates to a process of preparing a medium that comprises an anti-oxidant and at least one other component, the process comprising preparing in situ in the medium the anti-oxidant; wherein the anti-oxidant is prepared from a glucan by use of a recombinant glucan lyase; and wherein the anti-oxidant is anhydro-fructose.

The present invention will now be described only by way of example. [0132]
Transgenic Grape [0133]
Transformed grapes are prepared following the teachings of Perl et al (ibid) but wherein the use of the combination of polyvinylpolypyrrolidone and dithiothreitol is optional. In these studies, the grapes are transformed with any one of the nucleotide sequences presented as SEQ ID No. 7-12. The transformation leads to in situ preparation of 1,5-D-anhydrofructose. The transformed grapes are beneficial for one or more of the reasons mentioned earlier. [0134]
Details on these studies are as follows. [0135]
Tissue-Culture Systems for Transformation Studies [0136]
The long term somatic embryogenic callus culture is developed from the vegetative tissues of anthers of [0137] Vitis vinifera CV Superior Seedless. Methods for another culture, induction of somatic embryogenesis and maintenance of embryogenic cultures, are previously described (Perl et al, 1995, Plant Sci 104: 193-200). Briefly, embryogenic calli are maintained on solidified (0.25% gelrite) MS medium (Murashige and Skoog, 1962, Physiol Plant 15: 473-497) supplemented with 6% sucrose, 2 mg/L 2,4-diclorophenoxyacetic acid (2,4-D), 5 mg/L Indole-3-aspartic acid (IASP), 0.2 mg/L 6-benzyladenine (BAP) and 1 mg/L abscisic acid (ABA). Proembryogenic calli are induced by transferring the calli to MS medium supplemented with the same phytohormones, but 2,4-D is substituted with 2 mg/L 2-naphthoxyacetic acid (NOA). This stage is used for transformation experiments.
Agrobacterium Strains [0138]
For studying the sensitivity of grape embryogenic calli to the presence of different Agrobacterium strains, or for stable transformation experiments, cocultivation is attempted using the following [0139] A tumefaciens strains: EHA 101-p492 (Perl et al. 1993, Bio/Technology 11:715-718); LBA 4404-pGPTV (Becker et al, 1992, Plant Mol Biol 20: 1195-1197); and GVE 3101-pPCV91 (Vancanneyt et al, 1990, Mol Gen Genet 220: 245-250). These strains contain the binary vectors conferring resistance to kanamycin (nptII), basta (bar) and hygromycin (hpt), respectively, all under the control of the nopalin-synthase (NOS) promoter and terminator. Bacteria are cultured with the proper antibiotics in liquid LB medium for 24 hours at 28° C. at 200 rpm.
Cocultivation [0140]
For studying the sensitivity of grape embryogenic calli to different Agrobacterium strains, bacterial cultures with different optical densities (0.1-0.7 at 630 nm) are prepared from an overnight culture of Agrobacterium strains. Bacteria are centrifuged 5 minutes, 5000 rpm and resuspended in antibiotic free McCown's Woody Plant Medium (WPM) (Lloyd and McCown, 1981, Int Plant Prop Soc Proc 30: 421-427). Three grams fresh weight of embryogenic calli (7 days after transfer to NOA containing medium) are resuspended in 10 ml of overnight cultured bacterial suspensions for 5 minutes, dry blotted and transferred to Petri dishes containing regeneration medium [basal WPM medium supplemented with thidiazuron (TDZ) (0.5 mg/L), Zeatin riboside (ZR) (0.5 mg/L), and sucrose (3%)]. The regeneration medium is solidified with gelrite (0.25% w/v) and the calli, after initial drainage of excess bacteria, are cocultivated in the dark at 25° C. for different times (5 minutes up to 7 days). For stable transformation experiments, inoculum (OD 0.6 at 630 nm) is prepared from an overnight culture of LBA 4404 or GVE 3101. Bacteria are centrifuged 5 minutes, 5000 rpm and resuspended in antibiotic-free WPM medium. Embryogenic calli (3 g fresh weight) are resuspended in 10 ml of bacteria for 5 minutes, dry blotted and transferred to Petri dishes containing solidified (0.25% w/v) gelrite regeneration medium supplemented with different antioxidants. The calli are cocultivated for 48 hours in the dark at 25° C. [0141]
Selective Culture [0142]
Following 48 hours of cocultivation, the embryogenic callus is maintained in the dark for 7 days on antioxidant containing regeneration medium. Subsequently, the calli are collected on a sterile metal screen and transferred to fresh WPM regeneration medium at 25° C. under 40 μE/m[0143] ²/s (white fluorescent tubes). All regeneration media are supplemented with 400 mg/L claforan, 1.5 g/L malt extract and different selectable markers: kanamycin (50-500 mg/L), hygromycin (15 mg/L) and Basta (1-10 mg/L). Periodic increases in hygromycin concentration are used. The putative transformed calli are cultured on regeneration medium supplemented with 15 mg/L hygromycin. Every two weeks the regenerating calli are transferred to fresh medium supplemented with 20 and 25 mg/L hygromycin respectively. Control, untransformed grape calli are also cultured on selective media and are periodically exposed to increasing hygromycin concentrations. Green adventitious embryos, which developed on calli cultured for 8-10 weeks on selective regeneration medium, are transferred to germination medium. Embryo germination, rooting and subsequent plantlet development are induced on WPM as described (Perl et al, 1995, Plant Sci 104: 193-200), supplemented with 25 mg/L hygromycin or 10 mg/L basta. Conversion of vitrified abnormal plantlets into normal-looking grape plantlets are obtained using solidified WPM medium supplemented with 0.1 mg/L NAA as described (Perl et al, 1995, Plant Sci 104: 193-200).
Transgenic Potatoes [0144]
General teachings on potato transformation may be found in our copending patent applications PCT/EP96/03053, PCT/EP96/03052 and PCT/EP94/01082 (the contents of each of which are incorporated herein by reference). [0145]
For the present studies, the following protocol is adopted. [0146]
Plasmid Construction [0147]
The disarmed [0148] Agrobacterium tumefaciens strain LBA 4404, containing the helper vir plasmid pRAL4404 (Hoekema et al, 1983 Nature 303 pp 179-180), is cultured on YMB agar (K₂HPO₄.3H₂O 660 mg 1⁻¹, MgSO₄200 mg 1⁻¹, NaCl 100 mg 1⁻¹, mannitol 10 g 1⁻¹, yeast extract 400 mg 1⁻¹, 0.8% w/v agar, pH 7.0) containing 100 mg 1⁻¹rifampicin and 500 mg 1⁻¹streptomycin sulphate. Transformation with pVICTOR IV GNG E35S nagB IV2′ or pVICTOR IV GNG rbc nagB IV2′ or pVICTOR IV GNG E35S nagB′ (which correspond to each of pVICTOR IV GNG E35S nagB IV2 or pVICTOR IV GNG rbc nagB IV2 or pVICTOR IV GNG E35S nagB but wherein each of those plasmids also contains any one of the nucleotide sequences shown as SEQ ID No.s. 7-12 operatively linked to a functional promoter) is accomplished using the freeze-thaw method of Holters et al (1978 Mol Gen Genet 163 181-187) and transformants are selected on YMB agar containing 100 mg 1⁻¹rifampicin and 500 mg 1⁻¹streptomycin, and 50 mg 1⁻¹gentamycin sulphate.
Transformation of Plants [0149]
Shoot cultures of [0150] Solanum tuberosum cv Saturna are maintained on LS agar containing Murashige Skoog basal salts (Sigma M6899) (Murashige and Skoog, 1965, Physiol Plant 15 473-497) with 2 μM silver thiosulphate, and nutrients and vitamins as described by Linsmaier and Skoog (1965 Physiol Plant 18 100-127). Cultures are maintained at 25° C. with a 16 h daily photoperiod. After approximately 40 days, subculturing is performed during which leaves are removed, and the shoots cut into mononodal segments of approximately 8 mm length.
Shoot cultures of approximately 40 days maturity (5-6 cm height) are cut into 8 mm internodal segments which are placed into liquid LS-medium containing [0151] Agrobacterium tumefaciens transformed with pVICTOR IV GNG E35S nagB IV2′ or pVICTOR IV GNG rbc nagB IV2′ or pVICTOR IV GNG E35S nagB′ (A₆₆₀=0.5, pathlength 1 cm). Following incubation at room temperature for 30 minutes, the segments are dried by blotting on to sterile filter paper and transferred to LS agar (0.8% w/v containing 2 mg 1⁻¹2,4-D and 500 μg 1⁻¹trans-zeatin. The explants are covered with filter paper, moistened with LS medium, and covered with a cloth for three days at 25° C. Following this treatment, the segments are washed with liquid LS medium containing 800 mg 1⁻¹carbenicillin, and transferred on to LS agar (0.8% w/v) containing 1 mg 1⁻¹trans-zeatin, 100 μg 1⁻¹gibberellic acid (GA3), with sucrose (eg 7.5 g 1⁻¹) and glucosamine (eg 2.5 g 1⁻¹) as the selection agent.
The segments are sub-cultured to fresh substrate each 3-4 weeks. In 3 to 4 weeks, shoots develop from the segments and the formation of new shoots continues for 3-4 months. [0152]
Rooting of Regenerated Shoots [0153]
The regenerated shoots are transferred to rooting substrate composed of LS-substrate, agar (8 g/l) and carbenicillin (800 mg/l). [0154]
The transgenic plants may be verified by performing a GUS assay on the co-introduced β-glucuronidase gene according to Hodal, L. et al. (Pl. Sci. (1992), 87:115-122). [0155]
Alternatively, the transgenic genotype of the regenerated shoot may be verified by performing NPTII assays (Radke, S. E. et al, Theor. Appl. Genet. (1988), 75: 685-694) or by performing PCR analysis according to Wang et al (1993, NAR 21 pp 4153-4154). [0156]
Transfer to Soil [0157]
The newly rooted plants (height approx. 2-3 cms) are transplanted from rooting substrate to soil and placed in a growth chamber (21° C., 16 hour light 200-400 uE/m[0158] ²/sec). When the plants are well established they are transferred to the greenhouse, where they are grown until tubers had developed and the upper part of the plants are senescing.
Harvesting [0159]
The potatoes are harvested after about 3 months. [0160]
Transgenic Maize Plants [0161]
Introduction [0162]
Since the first publication of production of transgenic plants in 1983 (Leemans, 1993 Biotechnology 11 s22), there have been numerous publications of production of transgenic plants including especially dicotyledon crop plants. [0163]
Until very recently there are very few reports on successful production of transgenic monocotyledononary crop plants. This relatively slow development within monocots are due to two causes. Firstly, until the early 1980s, efficient regeneration of plants from cultured cells and tissues of monocots had proven very difficult. This problem is ultimately solved by the culture of explants from immature and embryogenic tissue, which retain their morphogenic potential on nutrient media containing plant growth regulators. Secondly, the monocots are not a natural host for [0164] Agrobacterium tumefaciens, meaning that the successful developed techniques within the dicots using their natural vector Agrobacterium tumefaciens is unsuccessful for many years in the monocots.
Nevertheless, it is now possible to successfully transformation and produce fertile transgenic plants of maize using methods such as: (1) Silicon Carbide Whiskers; (2) Particle Bombardment; (3) DNA Uptake by PEG treated protoplast; or (4) DNA Uptake in Electroporation of Tissue. Each of these methods—which are reviewed by Thompson (1995 Euphtytica 85 pp 75-80)—may be used to prepare inter alia transgenic maize according to the present invention. [0165]
In particular, the particle Gun method has been successfully used for the transformation of monocots. However, EP-A-0604662 reports on a different method of transforming monocotyledons. The method comprises transforming cultured tissues of a monocotyledon under or after dedifferentiation with Agrobacterium containing a super binary vector as a selectable marker a hygromycin-resistant gene is used. Production of transgenic calli and plant is demonstrated using the hygromycin selection. This method may be used to prepare inter alia transgenic maize according to the present invention. [0166]
Subsequent to the method of EP-A-0604662, EP-A-0672752 reports on non-dedifferentiated immature embryos. In this regard, both hygromycin-resistance and PPT-resistance genes are used as the selectable marker, with PPT giving rise to 10% or more independent transformed plants. This method may be used to prepare inter alia transgenic maize according to the present invention. [0167]
To date, it would appear that transgenic maize plants can be successfully produced from easily-culturable varieties—such as the inbred line A188. In this regard, see the teachings of Ishida et al (1996 Nature Biotechnology 14 pp 745-750). The method disclosed by these workers may be used to prepare inter alia transgenic maize according to the present invention. [0168]
Vasil (1996 Nature Biotechnology 14 pp 702-703) presents a further review article on transformation of maize. Even though it is possible to prepare transformed maize by use of, for example, particle Gun mediated transformation, for the present studies the following protocol is adopted. [0169]
Plasmid Construction [0170]
The disarmed [0171] Agrobacterium tumefaciens strain LBA 4404, containing the helper vir plasmid pRAL4404 (Hoekema et al, 1983 Nature 303 pp 179-180), is cultured on YMB agar (K₂HPO₄.3H₂O 660 mg 1⁻¹, MgSO₄200 mg 1⁻¹, NaCl 100 mg 1⁻¹, mannitol 10 g 1⁻¹, yeast extract 400 mg 1⁻¹, 0.8% w/v agar, pH 7.0) containing 100 mg 1⁻¹rifampicin and 500 mg 1⁻¹streptomycin sulphate. Transformation with pVICTOR IV GNG E35S nagB IV2′ or pVICTOR IV GNG rbc nagB IV2′ or pVICTOR IV GNG E35S nagB′ is accomplished using the freeze-thaw method of Holters et al (1978 Mol Gen Genet 163 181-187) and transformants are selected on YMB agar containing 100 mg 1⁻¹rifampicin and 500 mg 1⁻¹streptomycin, and 50 mg 1−1 gentamycin sulphate.
Isolation and Cocultivation of Explants [0172]
Immature embryos of, for example, maize line A188 of the size between 1.5 to 2.5 mm are isolated and cocultivated with [0173] Agrobacterium tumefaciens strain LBA 4404 in N6-AS for 2-3 days at 25° C. under illumination. Thereafter, the embryos are washed with sterilized water containing 250 mg/l of cefotaxime and transferred to an LS medium and 250 mg/l cefotaxime and glucosamine in concentrations of up to 100 mg/l (the medium is hereafter called LSS1).
Conditions for the Selection of Transgenic Plants [0174]
The explants are cultured for three weeks on LSS1 medium and then transferred to an LS medium containing glucosamine and cefotaxime. After three weeks on this medium, green shoots are isolated. [0175]
Rooting of Transformed Shoots [0176]
Transformed shoots are transferred to an MS medium containing 2 mg/l for rooting. After four weeks on this medium, plantlets are transferred to pots with sterile soil for acclimatisation. [0177]
Transgenic Guar Plants [0178]
Transformation of guar cotyledonary explants is performed according to Joersbo and Okkels (PCT/DK95/00221) using [0179] Agrobacterium tumefaciens LBA4404 harbouring a suitable plasmid.
Other plants may be transformed in accordance with the present invention, such as other fruits, other vegetables, and other plants such as coffee plants, tea plants etc. [0180]
Other modifications of the present invention will be apparent to those skilled in the art. [0181]
1 12 1 1088 PRT Unknown fungus sp. or fungus infected gracilariopsis sp. 1 Met Phe Ser Thr Leu Ala Phe Val Ala Pro Ser Ala Leu Gly Ala Ser 1 5 10 15 Thr Phe Val Gly Ala Glu Val Arg Ser Asn Val Arg Ile His Ser Ala 20 25 30 Phe Pro Ala Val His Thr Ala Thr Arg Lys Thr Asn Arg Leu Asn Val 35 40 45 Ser Met Thr Ala Leu Ser Asp Lys Gln Thr Ala Thr Ala Gly Ser Thr 50 55 60 Asp Asn Pro Asp Gly Ile Asp Tyr Lys Thr Tyr Asp Tyr Val Gly Val 65 70 75 80 Trp Gly Phe Ser Pro Leu Ser Asn Thr Asn Trp Phe Ala Ala Gly Ser 85 90 95 Ser Thr Pro Gly Gly Ile Thr Asp Trp Thr Ala Thr Met Asn Val Asn 100 105 110 Phe Asp Arg Ile Asp Asn Pro Ser Ile Thr Val Gln His Pro Val Gln 115 120 125 Val Gln Val Thr Ser Tyr Asn Asn Asn Ser Tyr Arg Val Arg Phe Asn 130 135 140 Pro Asp Gly Pro Ile Arg Asp Val Thr Arg Gly Pro Ile Leu Lys Gln 145 150 155 160 Gln Leu Asp Trp Ile Arg Thr Gln Glu Leu Ser Glu Gly Cys Asp Pro 165 170 175 Gly Met Thr Phe Thr Ser Glu Gly Phe Leu Thr Phe Glu Thr Lys Asp 180 185 190 Leu Ser Val Ile Ile Tyr Gly Asn Phe Lys Thr Arg Val Thr Arg Lys 195 200 205 Ser Asp Gly Lys Val Ile Met Glu Asn Asp Glu Val Gly Thr Ala Ser 210 215 220 Ser Gly Asn Lys Cys Arg Gly Leu Met Phe Val Asp Arg Leu Tyr Gly 225 230 235 240 Asn Ala Ile Ala Ser Val Asn Lys Asn Phe Arg Asn Asp Ala Val Lys 245 250 255 Gln Glu Gly Phe Tyr Gly Ala Gly Glu Val Asn Cys Lys Tyr Gln Asp 260 265 270 Thr Tyr Ile Leu Glu Arg Thr Gly Ile Ala Met Thr Asn Tyr Asn Tyr 275 280 285 Asp Asn Leu Asn Tyr Asn Gln Trp Asp Leu Arg Pro Pro His His Asp 290 295 300 Gly Ala Leu Asn Pro Asp Tyr Tyr Ile Pro Met Tyr Tyr Ala Ala Pro 305 310 315 320 Trp Leu Ile Val Asn Gly Cys Ala Gly Thr Ser Glu Gln Tyr Ser Tyr 325 330 335 Gly Trp Phe Met Asp Asn Val Ser Gln Ser Tyr Met Asn Thr Gly Asp 340 345 350 Thr Thr Trp Asn Ser Gly Gln Glu Asp Leu Ala Tyr Met Gly Ala Gln 355 360 365 Tyr Gly Pro Phe Asp Gln His Phe Val Tyr Gly Ala Gly Gly Gly Met 370 375 380 Glu Cys Val Val Thr Ala Phe Ser Leu Leu Gln Gly Lys Glu Phe Glu 385 390 395 400 Asn Gln Val Leu Asn Lys Arg Ser Val Met Pro Pro Lys Tyr Val Phe 405 410 415 Gly Phe Phe Gln Gly Val Phe Gly Thr Ser Ser Leu Leu Arg Ala His 420 425 430 Met Pro Ala Gly Glu Asn Asn Ile Ser Val Glu Glu Ile Val Glu Gly 435 440 445 Tyr Gln Asn Asn Asn Phe Pro Phe Glu Gly Leu Ala Val Asp Val Asp 450 455 460 Met Gln Asp Asn Leu Arg Val Phe Thr Thr Lys Gly Glu Phe Trp Thr 465 470 475 480 Ala Asn Arg Val Gly Thr Gly Gly Asp Pro Asn Asn Arg Ser Val Phe 485 490 495 Glu Trp Ala His Asp Lys Gly Leu Val Cys Gln Thr Asn Ile Thr Cys 500 505 510 Phe Leu Arg Asn Asp Asn Glu Gly Gln Asp Tyr Glu Val Asn Gln Thr 515 520 525 Leu Arg Glu Arg Gln Leu Tyr Thr Lys Asn Asp Ser Leu Thr Gly Thr 530 535 540 Asp Phe Gly Met Thr Asp Asp Gly Pro Ser Asp Ala Tyr Ile Gly His 545 550 555 560 Leu Asp Tyr Gly Gly Gly Val Glu Cys Asp Ala Leu Phe Pro Asp Trp 565 570 575 Gly Arg Pro Asp Val Ala Glu Trp Trp Gly Asn Asn Tyr Lys Lys Leu 580 585 590 Phe Ser Ile Gly Leu Asp Phe Val Trp Gln Asp Met Thr Val Pro Ala 595 600 605 Met Met Pro His Lys Ile Gly Asp Asp Ile Asn Val Lys Pro Asp Gly 610 615 620 Asn Trp Pro Asn Ala Asp Asp Pro Ser Asn Gly Gln Tyr Asn Trp Lys 625 630 635 640 Thr Tyr His Pro Gln Val Leu Val Thr Asp Met Arg Tyr Glu Asn His 645 650 655 Gly Arg Glu Pro Met Val Thr Gln Arg Asn Ile His Ala Tyr Thr Leu 660 665 670 Cys Glu Ser Thr Arg Lys Glu Gly Ile Val Glu Asn Ala Asp Thr Leu 675 680 685 Thr Lys Phe Arg Arg Ser Tyr Ile Ile Ser Arg Gly Gly Tyr Ile Gly 690 695 700 Asn Gln His Phe Gly Gly Met Trp Val Gly Asp Asn Ser Thr Thr Ser 705 710 715 720 Asn Tyr Ile Gln Met Met Ile Ala Asn Asn Ile Asn Met Asn Met Ser 725 730 735 Cys Leu Pro Leu Val Gly Ser Asp Ile Gly Gly Phe Thr Ser Tyr Asp 740 745 750 Asn Glu Asn Gln Arg Thr Pro Cys Thr Gly Asp Leu Met Val Arg Tyr 755 760 765 Val Gln Ala Gly Cys Leu Leu Pro Trp Phe Arg Asn His Tyr Asp Arg 770 775 780 Trp Ile Glu Ser Lys Asp His Gly Lys Asp Tyr Gln Glu Leu Tyr Met 785 790 795 800 Tyr Pro Asn Glu Met Asp Thr Leu Arg Lys Phe Val Glu Phe Arg Tyr 805 810 815 Arg Trp Gln Glu Val Leu Tyr Thr Ala Met Tyr Gln Asn Ala Ala Phe 820 825 830 Gly Lys Pro Ile Ile Lys Ala Ala Ser Met Tyr Asn Asn Asp Ser Asn 835 840 845 Val Arg Arg Ala Gln Asn Asp His Phe Leu Leu Gly Gly His Asp Gly 850 855 860 Tyr Arg Ile Leu Cys Ala Pro Val Val Trp Glu Asn Ser Thr Glu Arg 865 870 875 880 Glu Leu Tyr Leu Pro Val Leu Thr Gln Trp Tyr Lys Phe Gly Pro Asp 885 890 895 Phe Asp Thr Lys Pro Leu Glu Gly Ala Met Asn Gly Gly Asp Arg Ile 900 905 910 Tyr Asn Tyr Pro Val Pro Gln Ser Glu Ser Pro Ile Phe Val Arg Glu 915 920 925 Gly Ala Ile Leu Pro Thr Arg Tyr Thr Leu Asn Gly Glu Asn Lys Ser 930 935 940 Leu Asn Thr Tyr Thr Asp Glu Asp Pro Leu Val Phe Glu Val Phe Pro 945 950 955 960 Leu Gly Asn Asn Arg Ala Asp Gly Met Cys Tyr Leu Asp Asp Gly Gly 965 970 975 Val Thr Thr Asn Ala Glu Asp Asn Gly Lys Phe Ser Val Val Lys Val 980 985 990 Ala Ala Glu Gln Asp Gly Gly Thr Glu Thr Ile Thr Phe Thr Asn Asp 995 1000 1005 Cys Tyr Glu Tyr Val Phe Gly Gly Pro Phe Tyr Val Arg Val Arg 1010 1015 1020 Gly Ala Gln Ser Pro Ser Asn Ile His Val Ser Ser Gly Ala Gly 1025 1030 1035 Ser Gln Asp Met Lys Val Ser Ser Ala Thr Ser Arg Ala Ala Leu 1040 1045 1050 Phe Asn Asp Gly Glu Asn Gly Asp Phe Trp Val Asp Gln Glu Thr 1055 1060 1065 Asp Ser Leu Trp Leu Lys Leu Pro Asn Val Val Leu Pro Asp Ala 1070 1075 1080 Val Ile Thr Ile Thr 1085 2 1091 PRT Unknown fungus sp. or fungus infected gracilariopsis sp. 2 Met Tyr Pro Thr Leu Thr Phe Val Ala Pro Ser Ala Leu Gly Ala Arg 1 5 10 15 Thr Phe Thr Cys Val Gly Ile Phe Arg Ser His Ile Leu Ile His Ser 20 25 30 Val Val Pro Ala Val Arg Leu Ala Val Arg Lys Ser Asn Arg Leu Asn 35 40 45 Val Ser Met Ser Ala Leu Phe Asp Lys Pro Thr Ala Val Thr Gly Gly 50 55 60 Lys Asp Asn Pro Asp Asn Ile Asn Tyr Thr Thr Tyr Asp Tyr Val Pro 65 70 75 80 Val Trp Arg Phe Asp Pro Leu Ser Asn Thr Asn Trp Phe Ala Ala Gly 85 90 95 Ser Ser Thr Pro Gly Asp Ile Asp Asp Trp Thr Ala Thr Met Asn Val 100 105 110 Asn Phe Asp Arg Ile Asp Asn Pro Ser Phe Thr Leu Glu Lys Pro Val 115 120 125 Gln Val Gln Val Thr Ser Tyr Lys Asn Asn Cys Phe Arg Val Arg Phe 130 135 140 Asn Pro Asp Gly Pro Ile Arg Asp Val Asp Arg Gly Pro Ile Leu Gln 145 150 155 160 Gln Gln Leu Asn Trp Ile Arg Lys Gln Glu Gln Ser Lys Gly Phe Asp 165 170 175 Pro Lys Met Gly Phe Thr Lys Glu Gly Phe Leu Lys Phe Glu Thr Lys 180 185 190 Asp Leu Asn Val Ile Ile Tyr Gly Asn Phe Lys Thr Arg Val Thr Arg 195 200 205 Lys Arg Asp Gly Lys Gly Ile Met Glu Asn Asn Glu Val Pro Ala Gly 210 215 220 Ser Leu Gly Asn Lys Cys Arg Gly Leu Met Phe Val Asp Arg Leu Tyr 225 230 235 240 Gly Thr Ala Ile Ala Ser Val Asn Glu Asn Tyr Arg Asn Asp Pro Asp 245 250 255 Arg Lys Glu Gly Phe Tyr Gly Ala Gly Glu Val Asn Cys Glu Phe Trp 260 265 270 Asp Ser Glu Gln Asn Arg Asn Lys Tyr Ile Leu Glu Arg Thr Gly Ile 275 280 285 Ala Met Thr Asn Tyr Asn Tyr Asp Asn Tyr Asn Tyr Asn Gln Ser Asp 290 295 300 Leu Ile Ala Pro Gly Tyr Pro Ser Asp Pro Asn Phe Tyr Ile Pro Met 305 310 315 320 Tyr Phe Ala Ala Pro Trp Val Val Val Lys Gly Cys Ser Gly Asn Ser 325 330 335 Asp Glu Gln Tyr Ser Tyr Gly Trp Phe Met Asp Asn Val Ser Gln Thr 340 345 350 Tyr Met Asn Thr Gly Gly Thr Ser Trp Asn Cys Gly Glu Glu Asn Leu 355 360 365 Ala Tyr Met Gly Ala Gln Cys Gly Pro Phe Asp Gln His Phe Val Tyr 370 375 380 Gly Asp Gly Asp Gly Leu Glu Asp Val Val Gln Ala Phe Ser Leu Leu 385 390 395 400 Gln Gly Lys Glu Phe Glu Asn Gln Val Leu Asn Lys Arg Ala Val Met 405 410 415 Pro Pro Lys Tyr Val Phe Gly Tyr Phe Gln Gly Val Phe Gly Ile Ala 420 425 430 Ser Leu Leu Arg Glu Gln Arg Pro Glu Gly Gly Asn Asn Ile Ser Val 435 440 445 Gln Glu Ile Val Glu Gly Tyr Gln Ser Asn Asn Phe Pro Leu Glu Gly 450 455 460 Leu Ala Val Asp Val Asp Met Gln Gln Asp Leu Arg Val Phe Thr Thr 465 470 475 480 Lys Ile Glu Phe Trp Thr Ala Asn Lys Val Gly Thr Gly Gly Asp Ser 485 490 495 Asn Asn Lys Ser Val Phe Glu Trp Ala His Asp Lys Gly Leu Val Cys 500 505 510 Gln Thr Asn Val Thr Cys Phe Leu Arg Asn Asp Asn Gly Gly Ala Asp 515 520 525 Tyr Glu Val Asn Gln Thr Leu Arg Glu Lys Gly Leu Tyr Thr Lys Asn 530 535 540 Asp Ser Leu Thr Asn Thr Asn Phe Gly Thr Thr Asn Asp Gly Pro Ser 545 550 555 560 Asp Ala Tyr Ile Gly His Leu Asp Tyr Gly Gly Gly Gly Asn Cys Asp 565 570 575 Ala Leu Phe Pro Asp Trp Gly Arg Pro Gly Val Ala Glu Trp Trp Gly 580 585 590 Asp Asn Tyr Ser Lys Leu Phe Lys Ile Gly Leu Asp Phe Val Trp Gln 595 600 605 Asp Met Thr Val Pro Ala Met Met Pro His Lys Val Gly Asp Ala Val 610 615 620 Asp Thr Arg Ser Pro Tyr Gly Trp Pro Asn Glu Asn Asp Pro Ser Asn 625 630 635 640 Gly Arg Tyr Asn Trp Lys Ser Tyr His Pro Gln Val Leu Val Thr Asp 645 650 655 Met Arg Tyr Glu Asn His Gly Arg Glu Pro Met Phe Thr Gln Arg Asn 660 665 670 Met His Ala Tyr Thr Leu Cys Glu Ser Thr Arg Lys Glu Gly Ile Val 675 680 685 Ala Asn Ala Asp Thr Leu Thr Lys Phe Arg Arg Ser Tyr Ile Ile Ser 690 695 700 Arg Gly Gly Tyr Ile Gly Asn Gln His Phe Gly Gly Met Trp Val Gly 705 710 715 720 Asp Asn Ser Ser Ser Gln Arg Tyr Leu Gln Met Met Ile Ala Asn Ile 725 730 735 Val Asn Met Asn Met Ser Cys Leu Pro Leu Val Gly Ser Asp Ile Gly 740 745 750 Gly Phe Thr Ser Tyr Asp Gly Arg Asn Val Cys Pro Gly Asp Leu Met 755 760 765 Val Arg Phe Val Gln Ala Gly Cys Leu Leu Pro Trp Phe Arg Asn His 770 775 780 Tyr Gly Arg Leu Val Glu Gly Lys Gln Glu Gly Lys Tyr Tyr Gln Glu 785 790 795 800 Leu Tyr Met Tyr Lys Asp Glu Met Ala Thr Leu Arg Lys Phe Ile Glu 805 810 815 Phe Arg Tyr Arg Trp Gln Glu Val Leu Tyr Thr Ala Met Tyr Gln Asn 820 825 830 Ala Ala Phe Gly Lys Pro Ile Ile Lys Ala Ala Ser Met Tyr Asp Asn 835 840 845 Asp Arg Asn Val Arg Gly Ala Gln Asp Asp His Phe Leu Leu Gly Gly 850 855 860 His Asp Gly Tyr Arg Ile Leu Cys Ala Pro Val Val Trp Glu Asn Thr 865 870 875 880 Thr Ser Arg Asp Leu Tyr Leu Pro Val Leu Thr Lys Trp Tyr Lys Phe 885 890 895 Gly Pro Asp Tyr Asp Thr Lys Arg Leu Asp Ser Ala Leu Asp Gly Gly 900 905 910 Gln Met Ile Lys Asn Tyr Ser Val Pro Gln Ser Asp Ser Pro Ile Phe 915 920 925 Val Arg Glu Gly Ala Ile Leu Pro Thr Arg Tyr Thr Leu Asp Gly Ser 930 935 940 Asn Lys Ser Met Asn Thr Tyr Thr Asp Lys Asp Pro Leu Val Phe Glu 945 950 955 960 Val Phe Pro Leu Gly Asn Asn Arg Ala Asp Gly Met Cys Tyr Leu Asp 965 970 975 Asp Gly Gly Ile Thr Thr Asp Ala Glu Asp His Gly Lys Phe Ser Val 980 985 990 Ile Asn Val Glu Ala Leu Arg Lys Gly Val Thr Thr Thr Ile Lys Phe 995 1000 1005 Ala Tyr Asp Thr Tyr Gln Tyr Val Phe Asp Gly Pro Phe Tyr Val 1010 1015 1020 Arg Ile Arg Asn Leu Thr Thr Ala Ser Lys Ile Asn Val Ser Ser 1025 1030 1035 Gly Ala Gly Glu Glu Asp Met Thr Pro Thr Ser Ala Asn Ser Arg 1040 1045 1050 Ala Ala Leu Phe Ser Asp Gly Gly Val Gly Glu Tyr Trp Ala Asp 1055 1060 1065 Asn Asp Thr Ser Ser Leu Trp Met Lys Leu Pro Asn Leu Val Leu 1070 1075 1080 Gln Asp Ala Val Ile Thr Ile Thr 1085 1090 3 1066 PRT Unknown fungus sp. or fungus infected gracilariopsis sp. 3 Met Ala Gly Phe Ser Asp Pro Leu Asn Phe Cys Lys Ala Glu Asp Tyr 1 5 10 15 Tyr Ser Val Ala Leu Asp Trp Lys Gly Pro Gln Lys Ile Ile Gly Val 20 25 30 Asp Thr Thr Pro Pro Lys Ser Thr Lys Phe Pro Lys Asn Trp His Gly 35 40 45 Val Asn Leu Arg Phe Asp Asp Gly Thr Leu Gly Val Val Gln Phe Ile 50 55 60 Arg Pro Cys Val Trp Arg Val Arg Tyr Asp Pro Gly Phe Lys Thr Ser 65 70 75 80 Asp Glu Tyr Gly Asp Glu Asn Thr Arg Thr Ile Val Gln Asp Tyr Met 85 90 95 Ser Thr Leu Ser Asn Lys Leu Asp Thr Tyr Arg Gly Leu Thr Trp Glu 100 105 110 Thr Lys Cys Glu Asp Ser Gly Asp Phe Phe Thr Phe Ser Ser Lys Val 115 120 125 Thr Ala Val Glu Lys Ser Glu Arg Thr Arg Asn Lys Val Gly Asp Gly 130 135 140 Leu Arg Ile His Leu Trp Lys Ser Pro Phe Arg Ile Gln Val Val Arg 145 150 155 160 Thr Leu Thr Pro Leu Lys Asp Pro Tyr Pro Ile Pro Asn Val Ala Ala 165 170 175 Ala Glu Ala Arg Val Ser Asp Lys Val Val Trp Gln Thr Ser Pro Lys 180 185 190 Thr Phe Arg Lys Asn Leu His Pro Gln His Lys Met Leu Lys Asp Thr 195 200 205 Val Leu Asp Ile Val Lys Pro Gly His Gly Glu Tyr Val Gly Trp Gly 210 215 220 Glu Met Gly Gly Ile Gln Phe Met Lys Glu Pro Thr Phe Met Asn Tyr 225 230 235 240 Phe Asn Phe Asp Asn Met Gln Tyr Gln Gln Val Tyr Ala Gln Gly Ala 245 250 255 Leu Asp Ser Arg Glu Pro Leu Tyr His Ser Asp Pro Phe Tyr Leu Asp 260 265 270 Val Asn Ser Asn Pro Glu His Lys Asn Ile Thr Ala Thr Phe Ile Asp 275 280 285 Asn Tyr Ser Gln Ile Ala Ile Asp Phe Gly Lys Thr Asn Ser Gly Tyr 290 295 300 Ile Lys Leu Gly Thr Arg Tyr Gly Gly Ile Asp Cys Tyr Gly Ile Ser 305 310 315 320 Ala Asp Thr Val Pro Glu Ile Val Arg Leu Tyr Thr Gly Leu Val Gly 325 330 335 Arg Ser Lys Leu Lys Pro Arg Tyr Ile Leu Gly Ala His Gln Ala Cys 340 345 350 Tyr Gly Tyr Gln Gln Glu Ser Asp Leu Tyr Ser Val Val Gln Gln Tyr 355 360 365 Arg Asp Cys Lys Phe Pro Leu Asp Gly Ile His Val Asp Val Asp Val 370 375 380 Gln Asp Gly Phe Arg Thr Phe Thr Thr Asn Pro His Thr Phe Pro Asn 385 390 395 400 Pro Lys Glu Met Phe Thr Asn Leu Arg Asn Asn Gly Ile Lys Cys Ser 405 410 415 Thr Asn Ile Thr Pro Val Ile Ser Ile Asn Asn Arg Glu Gly Gly Tyr 420 425 430 Ser Thr Leu Leu Glu Gly Val Asp Lys Lys Tyr Phe Ile Met Asp Asp 435 440 445 Arg Tyr Thr Glu Gly Thr Ser Gly Asn Ala Lys Asp Val Arg Tyr Met 450 455 460 Tyr Tyr Gly Gly Gly Asn Lys Val Glu Val Asp Pro Asn Asp Val Asn 465 470 475 480 Gly Arg Pro Asp Phe Lys Asp Asn Tyr Asp Phe Pro Ala Asn Phe Asn 485 490 495 Ser Lys Gln Tyr Pro Tyr His Gly Gly Val Ser Tyr Gly Tyr Gly Asn 500 505 510 Gly Ser Ala Gly Phe Tyr Pro Asp Leu Asn Arg Lys Glu Val Arg Ile 515 520 525 Trp Trp Gly Met Gln Tyr Lys Tyr Leu Phe Asp Met Gly Leu Glu Phe 530 535 540 Val Trp Gln Asp Met Thr Thr Pro Ala Ile His Thr Ser Tyr Gly Asp 545 550 555 560 Met Lys Gly Leu Pro Thr Arg Leu Leu Val Thr Ser Asp Ser Val Thr 565 570 575 Asn Ala Ser Glu Lys Lys Leu Ala Ile Glu Thr Trp Ala Leu Tyr Ser 580 585 590 Tyr Asn Leu His Lys Ala Thr Trp His Gly Leu Ser Arg Leu Glu Ser 595 600 605 Arg Lys Asn Lys Arg Asn Phe Ile Leu Gly Arg Gly Ser Tyr Ala Gly 610 615 620 Ala Tyr Arg Phe Ala Gly Leu Trp Thr Gly Asp Asn Ala Ser Asn Trp 625 630 635 640 Glu Phe Trp Lys Ile Ser Val Ser Gln Val Leu Ser Leu Gly Leu Asn 645 650 655 Gly Val Cys Ile Ala Gly Ser Asp Thr Gly Gly Phe Glu Pro Tyr Arg 660 665 670 Asp Ala Asn Gly Val Glu Glu Lys Tyr Cys Ser Pro Glu Leu Leu Ile 675 680 685 Arg Trp Tyr Thr Gly Ser Phe Leu Leu Pro Trp Leu Arg Asn His Tyr 690 695 700 Val Lys Lys Asp Arg Lys Trp Phe Gln Glu Pro Tyr Ser Tyr Pro Lys 705 710 715 720 His Leu Glu Thr His Pro Glu Leu Ala Asp Gln Ala Trp Leu Tyr Lys 725 730 735 Ser Val Leu Glu Ile Cys Arg Tyr Tyr Val Glu Leu Arg Tyr Ser Leu 740 745 750 Ile Gln Leu Leu Tyr Asp Cys Met Phe Gln Asn Val Val Asp Gly Met 755 760 765 Pro Ile Thr Arg Ser Met Leu Leu Thr Asp Thr Glu Asp Thr Thr Phe 770 775 780 Phe Asn Glu Ser Gln Lys Phe Leu Asp Asn Gln Tyr Met Ala Gly Asp 785 790 795 800 Asp Ile Leu Val Ala Pro Ile Leu His Ser Arg Lys Glu Ile Pro Gly 805 810 815 Glu Asn Arg Asp Val Tyr Leu Pro Leu Tyr His Thr Trp Tyr Pro Ser 820 825 830 Asn Leu Arg Pro Trp Asp Asp Gln Gly Val Ala Leu Gly Asn Pro Val 835 840 845 Glu Gly Gly Ser Val Ile Asn Tyr Thr Ala Arg Ile Val Ala Pro Glu 850 855 860 Asp Tyr Asn Leu Phe His Ser Val Val Pro Val Tyr Val Arg Glu Gly 865 870 875 880 Ala Ile Ile Pro Gln Ile Glu Val Arg Gln Trp Thr Gly Gln Gly Gly 885 890 895 Ala Asn Arg Ile Lys Phe Asn Ile Tyr Pro Gly Lys Asp Lys Glu Tyr 900 905 910 Cys Thr Tyr Leu Asp Asp Gly Val Ser Arg Asp Ser Ala Pro Glu Asp 915 920 925 Leu Pro Gln Tyr Lys Glu Thr His Glu Gln Ser Lys Val Glu Gly Ala 930 935 940 Glu Ile Ala Lys Gln Ile Gly Lys Lys Thr Gly Tyr Asn Ile Ser Gly 945 950 955 960 Thr Asp Pro Glu Ala Lys Gly Tyr His Arg Lys Val Ala Val Thr Gln 965 970 975 Thr Ser Lys Asp Lys Thr Arg Thr Val Thr Ile Glu Pro Lys His Asn 980 985 990 Gly Tyr Asp Pro Ser Lys Glu Val Gly Asp Tyr Tyr Thr Ile Ile Leu 995 1000 1005 Trp Tyr Ala Pro Gly Phe Asp Gly Ser Ile Val Asp Val Ser Lys 1010 1015 1020 Thr Thr Val Asn Val Glu Gly Gly Val Glu His Gln Val Tyr Lys 1025 1030 1035 Asn Ser Asp Leu His Thr Val Val Ile Asp Val Lys Glu Val Ile 1040 1045 1050 Gly Thr Thr Lys Ser Val Lys Ile Thr Cys Thr Ala Ala 1055 1060 1065 4 1070 PRT Unknown fungus sp. or fungus infected gracilariopsis sp. 4 Met Ala Gly Leu Ser Asp Pro Leu Asn Phe Cys Lys Ala Glu Asp Tyr 1 5 10 15 Tyr Ala Ala Ala Lys Gly Trp Ser Gly Pro Gln Lys Ile Ile Arg Tyr 20 25 30 Asp Gln Thr Pro Pro Gln Gly Thr Lys Asp Pro Lys Ser Trp His Ala 35 40 45 Val Asn Leu Pro Phe Asp Asp Gly Thr Met Cys Val Val Gln Phe Val 50 55 60 Arg Pro Cys Val Trp Arg Val Arg Tyr Asp Pro Ser Val Lys Thr Ser 65 70 75 80 Asp Glu Tyr Gly Asp Glu Asn Thr Arg Thr Ile Val Gln Asp Tyr Met 85 90 95 Thr Thr Leu Val Gly Asn Leu Asp Ile Phe Arg Gly Leu Thr Trp Val 100 105 110 Ser Thr Leu Glu Asp Ser Gly Glu Tyr Tyr Thr Phe Lys Ser Glu Val 115 120 125 Thr Ala Val Asp Glu Thr Glu Arg Thr Arg Asn Lys Val Gly Asp Gly 130 135 140 Leu Lys Ile Tyr Leu Trp Lys Asn Pro Phe Arg Ile Gln Val Val Arg 145 150 155 160 Leu Leu Thr Pro Leu Val Asp Pro Phe Pro Ile Pro Asn Val Ala Asn 165 170 175 Ala Thr Ala Arg Val Ala Asp Lys Val Val Trp Gln Thr Ser Pro Lys 180 185 190 Thr Phe Arg Lys Asn Leu His Pro Gln His Lys Met Leu Lys Asp Thr 195 200 205 Val Leu Asp Ile Ile Lys Pro Gly His Gly Glu Tyr Val Gly Trp Gly 210 215 220 Glu Met Gly Gly Ile Glu Phe Met Lys Glu Pro Thr Phe Met Asn Tyr 225 230 235 240 Phe Asn Phe Asp Asn Met Gln Tyr Gln Gln Val Tyr Ala Gln Gly Ala 245 250 255 Leu Asp Ser Arg Glu Pro Leu Tyr His Ser Asp Pro Phe Tyr Leu Asp 260 265 270 Val Asn Ser Asn Pro Glu His Lys Asn Ile Thr Ala Thr Phe Ile Asp 275 280 285 Asn Tyr Ser Gln Ile Ala Ile Asp Phe Gly Lys Thr Asn Ser Gly Tyr 290 295 300 Ile Lys Leu Gly Thr Arg Tyr Gly Gly Ile Asp Cys Tyr Gly Ile Ser 305 310 315 320 Ala Asp Thr Val Pro Glu Ile Val Arg Leu Tyr Thr Gly Leu Val Gly 325 330 335 Arg Ser Lys Leu Lys Pro Arg Tyr Ile Leu Gly Ala His Gln Ala Cys 340 345 350 Tyr Gly Tyr Gln Gln Glu Ser Asp Leu His Ala Val Val Gln Gln Tyr 355 360 365 Arg Asp Thr Lys Phe Pro Leu Asp Gly Leu His Val Asp Val Asp Phe 370 375 380 Gln Asp Asn Phe Arg Thr Phe Thr Thr Asn Pro Ile Thr Phe Pro Asn 385 390 395 400 Pro Lys Glu Met Phe Thr Asn Leu Arg Asn Asn Gly Ile Lys Cys Ser 405 410 415 Thr Asn Ile Thr Pro Val Ile Ser Ile Arg Asp Arg Pro Asn Gly Tyr 420 425 430 Ser Thr Leu Asn Glu Gly Tyr Asp Lys Lys Tyr Phe Ile Met Asp Asp 435 440 445 Arg Tyr Thr Glu Gly Thr Ser Gly Asp Pro Gln Asn Val Arg Tyr Ser 450 455 460 Phe Tyr Gly Gly Gly Asn Pro Val Glu Val Asn Pro Asn Asp Val Trp 465 470 475 480 Ala Arg Pro Asp Phe Gly Asp Asn Tyr Asp Phe Pro Thr Asn Phe Asn 485 490 495 Cys Lys Asp Tyr Pro Tyr His Gly Gly Val Ser Tyr Gly Tyr Gly Asn 500 505 510 Gly Thr Pro Gly Tyr Tyr Pro Asp Leu Asn Arg Glu Glu Val Arg Ile 515 520 525 Trp Trp Gly Leu Gln Tyr Glu Tyr Leu Phe Asn Met Gly Leu Glu Phe 530 535 540 Val Trp Gln Asp Met Thr Thr Pro Ala Ile His Ser Ser Tyr Gly Asp 545 550 555 560 Met Lys Gly Leu Pro Thr Arg Leu Leu Val Thr Ala Asp Ser Val Thr 565 570 575 Asn Ala Ser Glu Lys Lys Leu Ala Ile Glu Ser Trp Ala Leu Tyr Ser 580 585 590 Tyr Asn Leu His Lys Ala Thr Phe His Gly Leu Gly Arg Leu Glu Ser 595 600 605 Arg Lys Asn Lys Arg Asn Phe Ile Leu Gly Arg Gly Ser Tyr Ala Gly 610 615 620 Ala Tyr Arg Phe Ala Gly Leu Trp Thr Gly Asp Asn Ala Ser Thr Trp 625 630 635 640 Glu Phe Trp Lys Ile Ser Val Ser Gln Val Leu Ser Leu Gly Leu Asn 645 650 655 Gly Val Cys Ile Ala Gly Ser Asp Thr Gly Gly Phe Glu Pro Ala Arg 660 665 670 Thr Glu Ile Gly Glu Glu Lys Tyr Cys Ser Pro Glu Leu Leu Ile Arg 675 680 685 Trp Tyr Thr Gly Ser Phe Leu Leu Pro Trp Leu Arg Asn His Tyr Val 690 695 700 Lys Lys Asp Arg Lys Trp Phe Gln Glu Pro Tyr Ala Tyr Pro Lys His 705 710 715 720 Leu Glu Thr His Pro Glu Leu Ala Asp Gln Ala Trp Leu Tyr Lys Ser 725 730 735 Val Leu Glu Ile Cys Arg Tyr Trp Val Glu Leu Arg Tyr Ser Leu Ile 740 745 750 Gln Leu Leu Tyr Asp Cys Met Phe Gln Asn Val Val Asp Gly Met Pro 755 760 765 Leu Ala Arg Ser Met Leu Leu Thr Asp Thr Glu Asp Thr Thr Phe Phe 770 775 780 Asn Glu Ser Gln Lys Phe Leu Asp Asn Gln Tyr Met Ala Gly Asp Asp 785 790 795 800 Ile Leu Val Ala Pro Ile Leu His Ser Arg Asn Glu Val Pro Gly Glu 805 810 815 Asn Arg Asp Val Tyr Leu Pro Leu Phe His Thr Trp Tyr Pro Ser Asn 820 825 830 Leu Arg Pro Trp Asp Asp Gln Gly Val Ala Leu Gly Asn Pro Val Glu 835 840 845 Gly Gly Ser Val Ile Asn Tyr Thr Ala Arg Ile Val Ala Pro Glu Asp 850 855 860 Tyr Asn Leu Phe His Asn Val Val Pro Val Tyr Ile Arg Glu Gly Ala 865 870 875 880 Ile Ile Pro Gln Ile Gln Val Arg Gln Trp Ile Gly Glu Gly Gly Pro 885 890 895 Asn Pro Ile Lys Phe Asn Ile Tyr Pro Gly Lys Asp Lys Glu Tyr Val 900 905 910 Thr Tyr Leu Asp Asp Gly Val Ser Arg Asp Ser Ala Pro Asp Asp Leu 915 920 925 Pro Gln Tyr Arg Glu Ala Tyr Glu Gln Ala Lys Val Glu Gly Lys Asp 930 935 940 Val Gln Lys Gln Leu Ala Val Ile Gln Gly Asn Lys Thr Asn Asp Phe 945 950 955 960 Ser Ala Ser Gly Ile Asp Lys Glu Ala Lys Gly Tyr His Arg Lys Val 965 970 975 Ser Ile Lys Gln Glu Ser Lys Asp Lys Thr Arg Thr Val Thr Ile Glu 980 985 990 Pro Lys His Asn Gly Tyr Asp Pro Ser Lys Glu Val Gly Asn Tyr Tyr 995 1000 1005 Thr Ile Ile Leu Trp Tyr Ala Pro Gly Phe Asp Gly Ser Ile Val 1010 1015 1020 Asp Val Ser Gln Ala Thr Val Asn Ile Glu Gly Gly Val Glu Cys 1025 1030 1035 Glu Ile Phe Lys Asn Thr Gly Leu His Thr Val Val Val Asn Val 1040 1045 1050 Lys Glu Val Ile Gly Thr Thr Lys Ser Val Lys Ile Thr Cys Thr 1055 1060 1065 Thr Ala 1070 5 1092 PRT Unknown fungus sp. or fungus infected gracilariopsis sp. 5 Met Phe Pro Thr Leu Thr Phe Ile Ala Pro Ser Ala Leu Ala Ala Ser 1 5 10 15 Thr Phe Val Gly Ala Asp Ile Arg Ser Gly Ile Arg Ile Gln Ser Ala 20 25 30 Leu Pro Ala Val Arg Asn Ala Val Arg Arg Ser Lys His Tyr Asn Val 35 40 45 Ser Met Thr Ala Leu Ser Asp Lys Gln Thr Ala Ile Ser Ile Gly Pro 50 55 60 Asp Asn Pro Asp Gly Ile Asn Tyr Gln Asn Tyr Asp Tyr Ile Pro Val 65 70 75 80 Ala Gly Phe Thr Pro Leu Ser Asn Thr Asn Trp Tyr Ala Ala Gly Ser 85 90 95 Ser Thr Pro Gly Gly Ile Thr Asp Trp Thr Ala Thr Met Asn Val Lys 100 105 110 Phe Asp Arg Ile Asp Asn Pro Ser Tyr Ser Asn Asn His Pro Val Gln 115 120 125 Ile Gln Val Thr Ser Tyr Asn Asn Asn Ser Phe Arg Ile Arg Phe Asn 130 135 140 Pro Asp Gly Pro Ile Arg Asp Val Ser Arg Gly Pro Ile Leu Lys Gln 145 150 155 160 Gln Leu Thr Trp Ile Arg Asn Gln Glu Leu Ala Gln Gly Cys Asn Pro 165 170 175 Asn Met Ser Phe Ser Pro Glu Gly Phe Leu Ser Phe Glu Thr Lys Asp 180 185 190 Leu Asn Val Ile Ile Tyr Gly Asn Cys Lys Met Arg Val Thr Lys Lys 195 200 205 Asp Gly Tyr Leu Val Met Glu Asn Asp Glu Cys Asn Ser Gln Ser Asp 210 215 220 Gly Asn Lys Cys Arg Gly Leu Met Tyr Val Asp Arg Leu Tyr Gly Asn 225 230 235 240 Ala Ile Ala Ser Val Gln Thr Asn Phe His Lys Asp Thr Ser Arg Asn 245 250 255 Glu Lys Phe Tyr Gly Ala Gly Glu Val Asn Cys Arg Tyr Glu Glu Gln 260 265 270 Gly Lys Ala Pro Thr Tyr Val Leu Glu Arg Ser Gly Leu Ala Met Thr 275 280 285 Asn Tyr Asn Tyr Asp Asn Leu Asn Tyr Asn Gln Pro Asp Val Val Pro 290 295 300 Pro Gly Tyr Pro Asp His Pro Asn Tyr Tyr Ile Pro Met Tyr Tyr Ala 305 310 315 320 Ala Pro Trp Leu Val Val Gln Gly Cys Ala Gly Thr Ser Lys Gln Tyr 325 330 335 Ser Tyr Gly Trp Phe Met Asp Asn Val Ser Gln Ser Tyr Met Asn Thr 340 345 350 Gly Asp Thr Ala Trp Asn Cys Gly Gln Glu Asn Leu Ala Tyr Met Gly 355 360 365 Ala Gln Tyr Gly Pro Phe Asp Gln His Phe Val Tyr Gly Asp Gly Asp 370 375 380 Gly Leu Glu Asp Val Val Lys Ala Phe Ser Phe Leu Gln Gly Lys Glu 385 390 395 400 Phe Glu Asp Lys Lys Leu Asn Lys Arg Ser Val Met Pro Pro Lys Tyr 405 410 415 Val Phe Gly Phe Phe Gln Gly Val Phe Gly Ala Leu Ser Leu Leu Lys 420 425 430 Gln Asn Leu Pro Ala Gly Glu Asn Asn Ile Ser Val Gln Glu Ile Val 435 440 445 Glu Gly Tyr Gln Asp Asn Asp Tyr Pro Phe Glu Gly Leu Ala Val Asp 450 455 460 Val Asp Met Gln Asp Asp Leu Arg Val Phe Thr Thr Lys Pro Glu Tyr 465 470 475 480 Trp Ser Ala Asn Met Val Gly Glu Gly Gly Asp Pro Asn Asn Arg Ser 485 490 495 Val Phe Glu Trp Ala His Asp Arg Gly Leu Val Cys Gln Thr Asn Val 500 505 510 Thr Cys Phe Leu Arg Asn Asp Asn Ser Gly Lys Pro Tyr Glu Val Asn 515 520 525 Gln Thr Leu Arg Glu Lys Gln Leu Tyr Thr Lys Asn Asp Ser Leu Asn 530 535 540 Asn Thr Asp Phe Gly Thr Thr Ser Asp Gly Pro Gly Asp Ala Tyr Ile 545 550 555 560 Gly His Leu Asp Tyr Gly Gly Gly Val Glu Cys Asp Ala Ile Phe Pro 565 570 575 Asp Trp Gly Arg Pro Asp Val Ala Gln Trp Trp Gly Glu Asn Tyr Lys 580 585 590 Lys Leu Phe Ser Ile Gly Leu Asp Phe Val Trp Gln Asp Met Thr Val 595 600 605 Pro Ala Met Met Pro His Arg Leu Gly Asp Ala Val Asn Lys Asn Ser 610 615 620 Gly Ser Ser Ala Pro Gly Trp Pro Asn Glu Asn Asp Pro Ser Asn Gly 625 630 635 640 Arg Tyr Asn Trp Lys Ser Tyr His Pro Gln Val Leu Val Thr Asp Met 645 650 655 Arg Tyr Gly Ala Glu Tyr Gly Arg Glu Pro Met Val Ser Gln Arg Asn 660 665 670 Ile His Ala Tyr Thr Leu Cys Glu Ser Thr Arg Arg Glu Gly Ile Val 675 680 685 Gly Asn Ala Asp Ser Leu Thr Lys Phe Arg Arg Ser Tyr Ile Ile Ser 690 695 700 Arg Gly Gly Tyr Ile Gly Asn Gln His Phe Gly Gly Met Trp Val Gly 705 710 715 720 Asp Asn Ser Ala Thr Glu Ser Tyr Leu Gln Met Met Leu Ala Asn Ile 725 730 735 Ile Asn Met Asn Met Ser Cys Leu Pro Leu Val Gly Ser Asp Ile Gly 740 745 750 Gly Phe Thr Gln Tyr Asn Asp Ala Gly Asp Pro Thr Pro Glu Asp Leu 755 760 765 Met Val Arg Phe Val Gln Ala Gly Cys Leu Leu Pro Trp Phe Arg Asn 770 775 780 His Tyr Asp Arg Trp Ile Glu Ser Lys Lys His Gly Lys Lys Tyr Gln 785 790 795 800 Glu Leu Tyr Met Tyr Pro Gly Gln Lys Asp Thr Leu Lys Lys Phe Val 805 810 815 Glu Phe Arg Tyr Arg Trp Gln Glu Val Leu Tyr Thr Ala Met Tyr Gln 820 825 830 Asn Ala Thr Thr Gly Glu Pro Ile Ile Lys Ala Ala Pro Met Tyr Asn 835 840 845 Asn Asp Val Asn Val Tyr Lys Ser Gln Asn Asp His Phe Leu Leu Gly 850 855 860 Gly His Asp Gly Tyr Arg Ile Leu Cys Ala Pro Val Val Arg Glu Asn 865 870 875 880 Ala Thr Ser Arg Glu Val Tyr Leu Pro Val Tyr Ser Lys Trp Phe Lys 885 890 895 Phe Gly Pro Asp Phe Asp Thr Lys Pro Leu Glu Asn Glu Ile Gln Gly 900 905 910 Gly Gln Thr Leu Tyr Asn Tyr Ala Ala Pro Leu Asn Asp Ser Pro Ile 915 920 925 Phe Val Arg Glu Gly Thr Ile Leu Pro Thr Arg Tyr Thr Leu Asp Gly 930 935 940 Val Asn Lys Ser Ile Asn Thr Tyr Thr Asp Asn Asp Pro Leu Val Phe 945 950 955 960 Glu Leu Phe Pro Leu Glu Asn Asn Gln Ala His Gly Leu Phe Tyr His 965 970 975 Asp Asp Gly Gly Val Thr Thr Asn Ala Glu Asp Phe Gly Lys Tyr Ser 980 985 990 Val Ile Ser Val Lys Ala Ala Gln Glu Gly Ser Gln Met Ser Val Lys 995 1000 1005 Phe Asp Asn Glu Val Tyr Glu His Gln Trp Gly Ala Ser Phe Tyr 1010 1015 1020 Val Arg Val Arg Asn Met Gly Ala Pro Ser Asn Ile Asn Val Ser 1025 1030 1035 Ser Gln Ile Gly Gln Gln Asp Met Gln Gln Ser Ser Val Ser Ser 1040 1045 1050 Arg Ala Gln Met Phe Thr Ser Ala Asn Asp Gly Glu Tyr Trp Val 1055 1060 1065 Asp Gln Ser Thr Asn Ser Leu Trp Leu Lys Leu Pro Gly Ala Val 1070 1075 1080 Ile Gln Asp Ala Ala Ile Thr Val Arg 1085 1090 6 570 PRT Unknown fungus sp. or fungus infected gracilariopsis sp. 6 Met Thr Asn Tyr Asn Tyr Asp Asn Leu Asn Tyr Asn Gln Pro Asp Leu 1 5 10 15 Ile Pro Pro Gly His Asp Ser Asp Pro Asp Tyr Tyr Ile Pro Met Tyr 20 25 30 Phe Ala Ala Pro Trp Val Ile Ala His Gly Tyr Arg Gly Thr Ser Asp 35 40 45 Gln Tyr Ser Tyr Gly Trp Phe Leu Asp Asn Val Ser Gln Ser Tyr Thr 50 55 60 Asn Thr Gly Asp Asp Ala Trp Ala Gly Gln Lys Asp Leu Ala Tyr Met 65 70 75 80 Gly Ala Gln Cys Gly Pro Phe Asp Gln His Phe Val Tyr Glu Ala Gly 85 90 95 Asp Gly Leu Glu Asp Val Val Thr Ala Phe Ser Tyr Leu Gln Gly Lys 100 105 110 Glu Tyr Glu Asn Gln Gly Leu Asn Ile Arg Ser Ala Met Pro Pro Lys 115 120 125 Tyr Val Phe Gly Phe Phe Gln Gly Val Phe Gly Ala Thr Ser Leu Leu 130 135 140 Arg Asp Asn Leu Pro Ala Gly Glu Asn Asn Val Ser Leu Glu Glu Ile 145 150 155 160 Val Glu Gly Tyr Gln Asn Gln Asn Val Pro Phe Glu Gly Leu Ala Val 165 170 175 Asp Val Asp Met Gln Asp Asp Leu Arg Val Phe Thr Thr Arg Pro Ala 180 185 190 Phe Trp Thr Ala Asn Lys Val Gly Glu Gly Gly Asp Pro Asn Asn Lys 195 200 205 Ser Val Phe Glu Trp Ala His Asp Arg Gly Leu Val Cys Gln Thr Asn 210 215 220 Val Thr Cys Phe Leu Lys Asn Glu Lys Asn Pro Tyr Glu Val Asn Gln 225 230 235 240 Ser Leu Arg Glu Lys Gln Leu Tyr Thr Lys Ser Asp Ser Leu Asp Asn 245 250 255 Ile Asp Phe Gly Thr Thr Pro Asp Gly Pro Ser Asp Ala Tyr Ile Gly 260 265 270 His Leu Asp Tyr Gly Gly Gly Val Glu Cys Asp Ala Leu Phe Pro Asp 275 280 285 Trp Gly Arg Pro Asp Val Ala Gln Trp Trp Gly Asp Asn Tyr Lys Lys 290 295 300 Leu Phe Ser Ile Gly Leu Asp Phe Val Trp Gln Asp Met Thr Val Pro 305 310 315 320 Ala Met Met Pro His Arg Leu Gly Asp Pro Val Gly Thr Asn Ser Gly 325 330 335 Glu Thr Ala Pro Gly Trp Pro Asn Asp Lys Asp Pro Ser Asn Gly Arg 340 345 350 Tyr Asn Trp Lys Ser Tyr His Pro Gln Val Leu Val Thr Asp Met Arg 355 360 365 Tyr Asp Asp Tyr Gly Arg Asp Pro Ile Val Thr Gln Arg Asn Leu His 370 375 380 Ala Tyr Thr Leu Cys Glu Ser Thr Arg Arg Glu Gly Ile Val Gly Asn 385 390 395 400 Ala Asp Ser Leu Thr Lys Phe Arg Arg Ser Tyr Ile Ile Ser Arg Gly 405 410 415 Gly Tyr Ile Gly Asn Gln His Phe Gly Gly Met Trp Val Gly Asp Asn 420 425 430 Ser Ser Thr Glu Asp Tyr Leu Ala Met Met Val Ile Asn Val Ile Asn 435 440 445 Met Asn Met Ser Gly Val Pro Leu Val Gly Ser Asp Ile Gly Gly Phe 450 455 460 Thr Glu His Asp Lys Arg Asn Pro Cys Thr Pro Asp Leu Met Met Arg 465 470 475 480 Phe Val Gln Ala Gly Cys Leu Leu Pro Trp Phe Arg Asn His Tyr Asp 485 490 495 Arg Trp Ile Glu Ser Lys Lys His Gly Lys Asn Tyr Gln Glu Leu Tyr 500 505 510 Met Tyr Arg Asp His Leu Asp Ala Leu Arg Ser Phe Val Glu Leu Arg 515 520 525 Tyr Arg Trp Gln Glu Val Leu Tyr Thr Ala Met Tyr Gln Asn Ala Leu 530 535 540 Asn Gly Lys Pro Ile Ile Lys Thr Val Ser Met Tyr Asn Asn Asp Met 545 550 555 560 Asn Val Lys Asp Ala Gln Asn Asp His Phe 565 570 7 3267 DNA Unknown fungus sp. or fungus infected gracilariopsis sp. 7 atgttttcaa cccttgcgtt tgtcgcacct agtgcgctgg gagccagtac cttcgtaggg 60 gcggaggtca ggtcaaatgt tcgtatccat tccgcttttc cagctgtgca cacagctact 120 cgcaaaacca atcgcctcaa tgtatccatg accgcattgt ccgacaaaca aacggctact 180 gcgggtagta cagacaatcc ggacggtatc gactacaaga cctacgatta cgtcggagta 240 tggggtttca gccccctctc caacacgaac tggtttgctg ccggctcttc taccccgggt 300 ggcatcactg attggacggc tacaatgaat gtcaacttcg accgtatcga caatccgtcc 360 atcactgtcc agcatcccgt tcaggttcag gtcacgtcat acaacaacaa cagctacagg 420 gttcgcttca accctgatgg ccctattcgt gatgtgactc gtgggcctat cctcaagcag 480 caactagatt ggattcgaac gcaggagctg tcagagggat gtgatcccgg aatgactttc 540 acatcagaag gtttcttgac ttttgagacc aaggatctaa gcgtcatcat ctacggaaat 600 ttcaagacca gagttacgag aaagtctgac ggcaaggtca tcatggaaaa tgatgaagtt 660 ggaactgcat cgtccgggaa caagtgccgg ggattgatgt tcgttgatag attatacggt 720 aacgctatcg cttccgtcaa caagaacttc cgcaacgacg cggtcaagca ggagggattc 780 tatggtgcag gtgaagtcaa ctgtaagtac caggacacct acatcttaga acgcactgga 840 atcgccatga caaattacaa ctacgataac ttgaactata accagtggga ccttagacct 900 ccgcatcatg atggtgccct caacccagac tattatattc caatgtacta cgcagcacct 960 tggttgatcg ttaatggatg cgccggtact tcggagcagt actcgtatgg atggttcatg 1020 gacaatgtct ctcaatctta catgaatact ggagatacta cctggaattc tggacaagag 1080 gacctggcat acatgggcgc gcagtatgga ccatttgacc aacattttgt ttacggtgct 1140 gggggtggga tggaatgtgt ggtcacagcg ttctctcttc tacaaggcaa ggagttcgag 1200 aaccaagttc tcaacaaacg ttcagtaatg cctccgaaat acgtctttgg tttcttccag 1260 ggtgttttcg ggacttcttc cttgttgaga gcgcatatgc cagcaggtga gaacaacatc 1320 tcagtcgaag aaattgtaga aggttatcaa aacaacaatt tccctttcga ggggctcgct 1380 gtggacgtgg atatgcaaga caacttgcgg gtgttcacca cgaagggcga attttggacc 1440 gcaaacaggg tgggtactgg cggggatcca aacaaccgat cggtttttga atgggcacat 1500 gacaaaggcc ttgtttgtca gacaaatata acttgcttcc tgaggaatga taacgagggg 1560 caagactacg aggtcaatca gacgttaagg gagaggcagt tgtacacgaa gaacgactcc 1620 ctgacgggta cggattttgg aatgaccgac gacggcccca gcgatgcgta catcggtcat 1680 ctggactatg ggggtggagt agaatgtgat gcacttttcc cagactgggg acggcctgac 1740 gtggccgaat ggtggggaaa taactataag aaactgttca gcattggtct cgacttcgtc 1800 tggcaagaca tgactgttcc agcaatgatg ccgcacaaaa ttggcgatga catcaatgtg 1860 aaaccggatg ggaattggcc gaatgcggac gatccgtcca atggacaata caactggaag 1920 acgtaccatc cccaagtgct tgtaactgat atgcgttatg agaatcatgg tcgggaaccg 1980 atggtcactc aacgcaacat tcatgcgtat acactgtgcg agtctactag gaaggaaggg 2040 atcgtggaaa acgcagacac tctaacgaag ttccgccgta gctacattat cagtcgtggt 2100 ggttacattg gtaaccagca tttcgggggt atgtgggtgg gagacaactc tactacatca 2160 aactacatcc aaatgatgat tgccaacaat attaacatga atatgtcttg cttgcctctc 2220 gtcggctccg acattggagg attcacctca tacgacaatg agaatcagcg aacgccgtgt 2280 accggggact tgatggtgag gtatgtgcag gcgggctgcc tgttgccgtg gttcaggaac 2340 cactatgata ggtggatcga gtccaaggac cacggaaagg actaccagga gctgtacatg 2400 tatccgaatg aaatggatac gttgaggaag ttcgttgaat tccgttatcg ctggcaggaa 2460 gtgttgtaca cggccatgta ccagaatgcg gctttcggaa agccgattat caaggctgct 2520 tcgatgtaca ataacgactc aaacgttcgc agggcgcaga acgatcattt ccttcttggt 2580 ggacatgatg gatatcgcat tctgtgcgcg cctgttgtgt gggagaattc gaccgaacgc 2640 gaattgtact tgcccgtgct gacccaatgg tacaaattcg gtcccgactt tgacaccaag 2700 cctctggaag gagcgatgaa cggaggggac cgaatttaca actaccctgt accgcaaagt 2760 gaatcaccaa tcttcgtgag agaaggtgcg attctcccta cccgctacac gttgaacggt 2820 gaaaacaaat cattgaacac gtacacggac gaagatccgt tggtgtttga agtattcccc 2880 ctcggaaaca accgtgccga cggtatgtgt tatcttgatg atggcggtgt gaccaccaat 2940 gctgaagaca atggcaagtt ctctgtcgtc aaggtggcag cggagcagga tggtggtacg 3000 gagacgataa cgtttacgaa tgattgctat gagtacgttt tcggtggacc gttctacgtt 3060 cgagtgcgcg gcgctcagtc gccgtcgaac atccacgtgt cttctggagc gggttctcag 3120 gacatgaagg tgagctctgc cacttccagg gctgcgctgt tcaatgacgg ggagaacggt 3180 gatttctggg ttgaccagga gacagattct ctgtggctga agttgcccaa cgttgttctc 3240 ccggacgctg tgatcacaat tacctaa 3267 8 3276 DNA Unknown fungus sp. or fungus infected gracilariopsis sp. 8 atgtatccaa ccctcacctt cgtggcgcct agtgcgctag gggccagaac tttcacgtgt 60 gtgggcattt ttaggtcaca cattcttatt cattcggttg ttccagcggt gcgtctagct 120 gtgcgcaaaa gcaaccgcct caatgtatcc atgtccgctt tgttcgacaa accgactgct 180 gttactggag ggaaggacaa cccggacaat atcaattaca ccacttatga ctacgtccct 240 gtgtggcgct tcgaccccct cagcaatacg aactggtttg ctgccggatc ttccactccc 300 ggcgatattg acgactggac ggcgacaatg aatgtgaact tcgaccgtat cgacaatcca 360 tccttcactc tcgagaaacc ggttcaggtt caggtcacgt catacaagaa caattgtttc 420 agggttcgct tcaaccctga tggtcctatt cgcgatgtgg atcgtgggcc tatcctccag 480 cagcaactaa attggatccg gaagcaggag cagtcgaagg ggtttgatcc taagatgggc 540 ttcacaaaag aaggtttctt gaaatttgag accaaggatc tgaacgttat catatatggc 600 aattttaaga ctagagttac gaggaagagg gatggaaaag ggatcatgga gaataatgaa 660 gtgccggcag gatcgttagg gaacaagtgc cggggattga tgtttgtcga caggttgtac 720 ggcactgcca tcgcttccgt taatgaaaat taccgcaacg atcccgacag gaaagagggg 780 ttctatggtg caggagaagt aaactgcgag ttttgggact ccgaacaaaa caggaacaag 840 tacatcttag aacgaactgg aatcgccatg acaaattaca attatgacaa ctataactac 900 aaccagtcag atcttattgc tccaggatat ccttccgacc cgaacttcta cattcccatg 960 tattttgcag caccttgggt agttgttaag ggatgcagtg gcaacagcga tgaacagtac 1020 tcgtacggat ggtttatgga taatgtctcc caaacttaca tgaatactgg tggtacttcc 1080 tggaactgtg gagaggagaa cttggcatac atgggagcac agtgcggtcc atttgaccaa 1140 cattttgtgt atggtgatgg agatggtctt gaggatgttg tccaagcgtt ctctcttctg 1200 caaggcaaag agtttgagaa ccaagttctg aacaaacgtg ccgtaatgcc tccgaaatat 1260 gtgtttggtt actttcaggg agtctttggg attgcttcct tgttgagaga gcaaagacca 1320 gagggtggta ataacatctc tgttcaagag attgtcgaag gttaccaaag caataacttc 1380 cctttagagg ggttagccgt agatgtggat atgcaacaag atttgcgcgt gttcaccacg 1440 aagattgaat tttggacggc aaataaggta ggcaccgggg gagactcgaa taacaagtcg 1500 gtgtttgaat gggcacatga caaaggcctt gtatgtcaga cgaatgttac ttgcttcttg 1560 agaaacgaca acggcggggc agattacgaa gtcaatcaga cattgaggga gaagggtttg 1620 tacacgaaga atgactcact gacgaacact aacttcggaa ctaccaacga cgggccgagc 1680 gatgcgtaca ttggacatct ggactatggt ggcggaggga attgtgatgc acttttccca 1740 gactggggtc gaccgggtgt ggctgaatgg tggggtgata actacagcaa gctcttcaaa 1800 attggtctgg atttcgtctg gcaagacatg acagttccag ctatgatgcc acacaaagtt 1860 ggcgacgcag tcgatacgag atcaccttac ggctggccga atgagaatga tccttcgaac 1920 ggacgataca attggaaatc ttaccatcca caagttctcg taactgatat gcgatatgag 1980 aatcatggaa gggaaccgat gttcactcaa cgcaatatgc atgcgtacac actctgtgaa 2040 tctacgagga aggaagggat tgttgcaaat gcagacactc taacgaagtt ccgccgcagt 2100 tatattatca gtcgtggagg ttacattggc aaccagcatt ttggaggaat gtgggttgga 2160 gacaactctt cctcccaaag atacctccaa atgatgatcg cgaacatcgt caacatgaac 2220 atgtcttgcc ttccactagt tgggtccgac attggaggtt ttacttcgta tgatggacga 2280 aacgtgtgtc ccggggatct aatggtaaga ttcgtgcagg cgggttgctt actaccgtgg 2340 ttcagaaacc actatggtag gttggtcgag ggcaagcaag agggaaaata ctatcaagaa 2400 ctgtacatgt acaaggacga gatggctaca ttgagaaaat tcattgaatt ccgttaccgc 2460 tggcaggagg tgttgtacac tgctatgtac cagaatgcgg ctttcgggaa accgattatc 2520 aaggcagctt ccatgtacga caacgacaga aacgttcgcg gcgcacagga tgaccacttc 2580 cttctcggcg gacacgatgg atatcgtatt ttgtgtgcac ctgttgtgtg ggagaataca 2640 accagtcgcg atctgtactt gcctgtgctg accaaatggt acaaattcgg ccctgactat 2700 gacaccaagc gcctggattc tgcgttggat ggagggcaga tgattaagaa ctattctgtg 2760 ccacaaagcg actctccgat atttgtgagg gaaggagcta ttctccctac ccgctacacg 2820 ttggacggtt cgaacaagtc aatgaacacg tacacagaca aagacccgtt ggtgtttgag 2880 gtattccctc ttggaaacaa ccgtgccgac ggtatgtgtt atcttgatga tggcggtatt 2940 actacagatg ctgaggacca tggcaaattc tctgttatca atgtcgaagc cttacggaaa 3000 ggtgttacga cgacgatcaa gtttgcgtat gacacttatc aatacgtatt tgatggtcca 3060 ttctacgttc gaatccgtaa tcttacgact gcatcaaaaa ttaacgtgtc ttctggagcg 3120 ggtgaagagg acatgacacc gacctctgcg aactcgaggg cagctttgtt cagtgatgga 3180 ggtgttggag aatactgggc tgacaatgat acgtcttctc tgtggatgaa gttgccaaac 3240 ctggttctgc aagacgctgt gattaccatt acgtag 3276 9 3201 DNA Unknown fungus sp. or fungus infected gracilariopsis sp. 9 atggcaggat tttctgatcc tctcaacttt tgcaaagcag aagactacta cagtgttgcg 60 ctagactgga agggccctca aaaaatcatt ggagtagaca ctactcctcc aaagagcacc 120 aagttcccca aaaactggca tggagtgaac ttgagattcg atgatgggac tttaggtgtg 180 gttcagttca ttaggccgtg cgtttggagg gttagatacg accctggttt caagacctct 240 gacgagtatg gtgatgagaa tacgaggaca attgtgcaag attatatgag tactctgagt 300 aataaattgg atacttatag aggtcttacg tgggaaacca agtgtgagga ttcgggagat 360 ttctttacct tctcatccaa ggtcaccgcc gttgaaaaat ccgagcggac ccgcaacaag 420 gtcggcgatg gcctcagaat tcacctatgg aaaagccctt tccgcatcca agtagtgcgc 480 accttgaccc ctttgaagga tccttacccc attccaaatg tagccgcagc cgaagcccgt 540 gtgtccgaca aggtcgtttg gcaaacgtct cccaagacat tcagaaagaa cctgcatccg 600 caacacaaga tgctaaagga tacagttctt gacattgtca aacctggaca tggcgagtat 660 gtggggtggg gagagatggg aggtatccag tttatgaagg agccaacatt catgaactat 720 tttaacttcg acaatatgca ataccagcaa gtctatgccc aaggtgctct cgattctcgc 780 gagccactgt accactcgga tcccttctat cttgatgtga actccaaccc ggagcacaag 840 aatatcacgg caacctttat cgataactac tctcaaattg ccatcgactt tggaaagacc 900 aactcaggct acatcaagct gggaaccagg tatggtggta tcgattgtta cggtatcagt 960 gcggatacgg tcccggaaat tgtacgactt tatacaggtc ttgttggacg ttcaaagttg 1020 aagcccagat atattctcgg ggcccatcaa gcctgttatg gataccaaca ggaaagtgac 1080 ttgtattctg tggtccagca gtaccgtgac tgtaaatttc cacttgacgg gattcacgtc 1140 gatgtcgatg ttcaggacgg cttcagaact ttcaccacca acccacacac tttccctaac 1200 cccaaagaga tgtttactaa cttgaggaat aatggaatca agtgctccac caatatcact 1260 cctgttatca gcattaacaa cagagagggt ggatacagta ccctccttga gggagttgac 1320 aaaaaatact ttatcatgga cgacagatat accgagggaa caagtgggaa tgcgaaggat 1380 gttcggtaca tgtactacgg tggtggtaat aaggttgagg tcgatcctaa tgatgttaat 1440 ggtcggccag actttaaaga caactatgac ttccccgcga acttcaacag caaacaatac 1500 ccctatcatg gtggtgtgag ctacggttat gggaacggta gtgcaggttt ttacccggac 1560 ctcaacagaa aggaggttcg tatctggtgg ggaatgcagt acaagtatct cttcgatatg 1620 ggactggaat ttgtgtggca agacatgact accccagcaa tccacacatc atatggagac 1680 atgaaagggt tgcccacccg tctactcgtc acctcagact ccgtcaccaa tgcctctgag 1740 aaaaagctcg caattgaaac ttgggctctc tactcctaca atctccacaa agcaacttgg 1800 catggtctta gtcgtctcga atctcgtaag aacaaacgaa acttcatcct cgggcgtgga 1860 agttatgccg gagcctatcg ttttgctggt ctctggactg gggataatgc aagtaactgg 1920 gaattctgga agatatcggt ctctcaagtt ctttctctgg gcctcaatgg tgtgtgcatc 1980 gcggggtctg atacgggtgg ttttgaaccc taccgtgatg caaatggggt cgaggagaaa 2040 tactgtagcc cagagctact catcaggtgg tatactggtt cattcctctt gccgtggctc 2100 aggaaccatt atgtcaaaaa ggacaggaaa tggttccagg aaccatactc gtaccccaag 2160 catcttgaaa cccatccaga actcgcagac caagcatggc tctataaatc cgttttggag 2220 atctgtaggt actatgtgga gcttagatac tccctcatcc aactacttta cgactgcatg 2280 tttcaaaacg tagtcgacgg tatgccaatc accagatcta tgctcttgac cgatactgag 2340 gataccacct tcttcaacga gagccaaaag ttcctcgaca accaatatat ggctggtgac 2400 gacattcttg ttgcacccat cctccacagt cgcaaagaaa ttccaggcga aaacagagat 2460 gtctatctcc ctctttacca cacctggtac ccctcaaatt tgagaccatg ggacgatcaa 2520 ggagtcgctt tggggaatcc tgtcgaaggt ggtagtgtca tcaattatac tgctaggatt 2580 gttgcacccg aggattataa tctcttccac agcgtggtac cagtctacgt tagagagggt 2640 gccatcatcc cgcaaatcga agtacgccaa tggactggcc aggggggagc caaccgcatc 2700 aagttcaaca tctaccctgg aaaggataag gagtactgta cctatcttga tgatggtgtt 2760 agccgtgata gtgcgccgga agacctccca cagtacaaag agacccacga acagtcgaag 2820 gttgaaggcg cggaaatcgc aaagcagatt ggaaagaaga cgggttacaa catctcagga 2880 accgacccag aagcaaaggg ttatcaccgc aaagttgctg tcacacaaac gtcaaaagac 2940 aagacgcgta ctgtcactat tgagccaaaa cacaatggat acgacccttc caaagaggtg 3000 ggtgattatt ataccatcat tctttggtac gcaccaggtt tcgatggcag catcgtcgat 3060 gtgagcaaga cgactgtgaa tgttgagggt ggggtggagc accaagttta taagaactcc 3120 gatttacata cggttgttat cgacgtgaag gaggtgatcg gtaccacaaa gagcgtcaag 3180 atcacatgta ctgccgctta a 3201 10 3213 DNA Unknown fungus sp. or fungus infected gracilariopsis sp. 10 atggcaggat tatccgaccc tctcaatttc tgcaaagcag aggactacta cgctgctgcc 60 aaaggctgga gtggccctca gaagatcatt cgctatgacc agacccctcc tcagggtaca 120 aaagatccga aaagctggca tgcggtaaac cttcctttcg atgacgggac tatgtgtgta 180 gtgcaattcg tcagaccctg tgtttggagg gttagatatg accccagtgt caagacttct 240 gatgagtacg gcgatgagaa tacgaggact attgtacaag actacatgac tactctggtt 300 ggaaacttgg acattttcag aggtcttacg tgggtttcta cgttggagga ttcgggcgag 360 tactacacct tcaagtccga agtcactgcc gtggacgaaa ccgaacggac tcgaaacaag 420 gtcggcgacg gcctcaagat ttacctatgg aaaaatccct ttcgcatcca ggtagtgcgt 480 ctcttgaccc ccctggtgga ccctttcccc attcccaacg tagccaatgc cacagcccgt 540 gtggccgaca aggttgtttg gcagacgtcc ccgaagacgt tcaggaaaaa cttgcatccg 600 cagcataaga tgttgaagga tacagttctt gatattatca agccggggca cggagagtat 660 gtgggttggg gagagatggg aggcatcgag tttatgaagg agccaacatt catgaattat 720 ttcaactttg acaatatgca atatcagcag gtctatgcac aaggcgctct tgatagtcgt 780 gagccgttgt atcactctga tcccttctat ctcgacgtga actccaaccc agagcacaag 840 aacattacgg caacctttat cgataactac tctcagattg ccatcgactt tgggaagacc 900 aactcaggct acatcaagct gggtaccagg tatggcggta tcgattgtta cggtatcagc 960 gcggatacgg tcccggagat tgtgcgactt tatactggac ttgttgggcg ttcgaagttg 1020 aagcccaggt atattctcgg agcccaccaa gcttgttatg gataccagca ggaaagtgac 1080 ttgcatgctg ttgttcagca gtaccgtgac accaagtttc cgcttgatgg gttgcatgtc 1140 gatgtcgact ttcaggacaa tttcagaacg tttaccacta acccgattac gttccctaat 1200 cccaaagaaa tgtttaccaa tctaaggaac aatggaatca agtgttccac caacatcacc 1260 cctgttatca gtatcagaga tcgcccgaat gggtacagta ccctcaatga gggatatgat 1320 aaaaagtact tcatcatgga tgacagatat accgagggga caagtgggga cccgcaaaat 1380 gttcgatact ctttttacgg cggtgggaac ccggttgagg ttaaccctaa tgatgtttgg 1440 gctcggccag actttggaga caattatgac ttccctacga acttcaactg caaagactac 1500 ccctatcatg gtggtgtgag ttacggatat gggaatggca ctccaggtta ctaccctgac 1560 cttaacagag aggaggttcg tatctggtgg ggattgcagt acgagtatct cttcaatatg 1620 ggactagagt ttgtatggca agatatgaca accccagcga tccattcatc atatggagac 1680 atgaaagggt tgcccacccg tctgctcgtc accgccgact cagttaccaa tgcctctgag 1740 aaaaagctcg caattgaaag ttgggctctt tactcctaca acctccataa agcaaccttc 1800 cacggtcttg gtcgtcttga gtctcgtaag aacaaacgta acttcatcct cggacgtggt 1860 agttacgccg gtgcctatcg ttttgctggt ctctggactg gagataacgc aagtacgtgg 1920 gaattctgga agatttcggt ctcccaagtt ctttctctag gtctcaatgg tgtgtgtata 1980 gcggggtctg atacgggtgg ttttgagccc gcacgtactg agattgggga ggagaaatat 2040 tgcagtccgg agctactcat caggtggtat actggatcat tccttttgcc atggcttaga 2100 aaccactacg tcaagaagga caggaaatgg ttccaggaac catacgcgta ccccaagcat 2160 cttgaaaccc atccagagct cgcagatcaa gcatggcttt acaaatctgt tctagaaatt 2220 tgcagatact gggtagagct aagatattcc ctcatccagc tcctttacga ctgcatgttc 2280 caaaacgtgg tcgatggtat gccacttgcc agatctatgc tcttgaccga tactgaggat 2340 acgaccttct tcaatgagag ccaaaagttc ctcgataacc aatatatggc tggtgacgac 2400 atccttgtag cacccatcct ccacagccgt aacgaggttc cgggagagaa cagagatgtc 2460 tatctccctc tattccacac ctggtacccc tcaaacttga gaccgtggga cgatcaggga 2520 gtcgctttag ggaatcctgt cgaaggtggc agcgttatca actacactgc caggattgtt 2580 gccccagagg attataatct cttccacaac gtggtgccgg tctacatcag agagggtgcc 2640 atcattccgc aaattcaggt acgccagtgg attggcgaag gagggcctaa tcccatcaag 2700 ttcaatatct accctggaaa ggacaaggag tatgtgacgt accttgatga tggtgttagc 2760 cgcgatagtg caccagatga cctcccgcag taccgcgagg cctatgagca agcgaaggtc 2820 gaaggcaaag acgtccagaa gcaacttgcg gtcattcaag ggaataagac taatgacttc 2880 tccgcctccg ggattgataa ggaggcaaag ggttatcacc gcaaagtttc tatcaaacag 2940 gagtcaaaag acaagacccg tactgtcacc attgagccaa aacacaacgg atacgacccc 3000 tctaaggaag ttggtaatta ttataccatc attctttggt acgcaccggg ctttgacggc 3060 agcatcgtcg atgtgagcca ggcgaccgtg aacatcgagg gcggggtgga atgcgaaatt 3120 ttcaagaaca ccggcttgca tacggttgta gtcaacgtga aagaggtgat cggtaccaca 3180 aagtccgtca agatcacttg cactaccgct tag 3213 11 3279 DNA Unknown fungus sp. or fungus infected gracilariopsis sp. 11 atgtttccta ccctgacctt catagcgccc agcgcgctgg ccgccagcac ctttgtgggc 60 gcggatatcc gatcgggcat tcgcattcaa tccgctcttc cggccgtgcg caacgctgtg 120 cgcaggagca aacattacaa tgtatccatg accgcattgt ctgacaagca aaccgctatc 180 agtattggcc ctgacaatcc ggacggtatc aactaccaaa actacgatta catccctgta 240 gcgggcttta cgcccctctc caacaccaac tggtatgctg ccggctcttc cactccgggc 300 ggcatcaccg actggaccgc taccatgaat gtcaaattcg accgcattga caatccgtcg 360 tactccaata accatcctgt tcagattcag gtcacgtcgt acaacaacaa cagcttcagg 420 attcgcttca accctgatgg ccccattcgt gacgtctctc gaggacctat cctgaaacag 480 caactcactt ggattcgaaa ccaggagctg gcgcagggat gtaatccgaa catgagcttc 540 tctcctgaag gttttttgtc ttttgaaacc aaagacctaa acgttataat ctacggcaac 600 tgcaagatga gagtcacgaa gaaggatggc tacctcgtca tggagaatga cgagtgcaac 660 tcgcaatcag atggcaataa gtgtagagga ttgatgtacg ttgaccggct atacggtaat 720 gctattgctt ccgtacaaac gaattttcac aaagacactt ctcggaacga gaaattctat 780 ggtgcaggtg aagtcaactg tcgctatgag gagcagggta aggcgccgac ttatgttcta 840 gaacgctctg gactcgccat gaccaattac aattacgaca acttgaacta caaccaacca 900 gacgtcgttc ctccaggtta tcccgaccat cccaactact acattccaat gtactacgca 960 gcaccgtggt tggtcgttca gggatgcgcg gggacatcga agcaatactc gtacggttgg 1020 tttatggaca atgtctctca gtcgtacatg aacactggag atacggcgtg gaactgcgga 1080 caggaaaacc tggcatacat gggcgcgcaa tacgggccat ttgatcagca ctttgtgtat 1140 ggtgatggag atggccttga agatgtcgtc aaagcgttct cctttcttca aggaaaggag 1200 ttcgaagaca aaaaactcaa caagcgttct gtaatgcctc cgaagtacgt gtttggtttc 1260 ttccagggtg ttttcggtgc actttcactg ttgaagcaga atctgcctgc cggagagaac 1320 aacatctcag tgcaagagat tgtggagggt taccaggata acgactaccc ctttgaaggg 1380 ctcgcggtag atgttgatat gcaagatgat ctgcgagtgt ttactaccaa accagaatat 1440 tggtcggcaa acatggtagg cgaaggcggt gatcctaata acagatcagt ctttgaatgg 1500 gcacatgaca ggggccttgt ctgtcagacg aacgtaactt gcttcttgag gaacgataac 1560 agtgggaaac catacgaagt gaatcagaca ttgagggaga aacagttgta tacgaagaat 1620 gattccttga acaacaccga ttttggaact acctcggatg ggcctggcga tgcgtacatt 1680 ggacatttgg actatggtgg tggagtggag tgtgatgcaa tcttcccaga ctggggtcga 1740 ccagacgtgg ctcaatggtg gggagaaaac tacaagaagc tgttcagcat tggtctcgat 1800 ttcgtgtggc aggatatgac ggtacctgcg atgatgccgc accgactcgg tgatgctgtc 1860 aacaaaaatt ccggtagttc ggcgccgggc tggccgaatg agaacgatcc atccaacgga 1920 cgatacaact ggaaatctta tcatccgcaa gtgctcgtga ccgacatgcg ctatggtgca 1980 gagtatggaa gggaaccgat ggtgtctcaa cgcaacattc acgcctacac tctttgtgaa 2040 tctaccagac gggagggaat tgtgggaaac gcagacagtt tgaccaagtt ccgccgcagt 2100 tacatcatca gtcgaggagg ttacatcggt aaccagcatt tcggagggat gtgggttggg 2160 gacaacagtg ccacagaatc ctacctccaa atgatgttgg cgaacattat caacatgaat 2220 atgtcgtgcc tcccgctagt tggctctgat attggcgggt tcacccagta caatgatgcg 2280 ggcgacccaa cccccgagga tttgatggta agattcgtgc aggctggctg tctgctaccg 2340 tggttcagaa accactatga caggtggatt gagtccaaga agcacgggaa gaaataccag 2400 gagttataca tgtacccggg gcaaaaggat acgttgaaga agttcgttga attccgctac 2460 cgctggcagg aggttttgta cacagccatg taccaaaatg ctaccactgg agagccgatc 2520 atcaaggcgg cgcccatgta caacaacgac gtcaacgtgt ataaatcgca gaatgatcat 2580 ttccttctcg gtggacatga cggctatcgt attctctgcg cacctgttgt gcgcgaaaat 2640 gcgacaagtc gcgaagtgta cctgcctgtg tatagcaagt ggttcaaatt cggaccggac 2700 tttgacacta agcccttgga aaatgagatt caaggaggtc agacgcttta taattacgct 2760 gcaccgctga acgattcgcc gatatttgtg agggaaggga ctattcttcc gacacggtac 2820 acgctggacg gtgtgaacaa atctatcaac acgtacacag acaatgatcc gcttgtattt 2880 gagctgttcc ctctcgaaaa caaccaggcg catggcttgt tctatcatga tgatggcggt 2940 gtcaccacca acgctgaaga ctttggcaag tattctgtga tcagtgtgaa ggccgcgcag 3000 gaaggttctc aaatgagtgt caagtttgac aatgaagttt atgaacacca atggggagca 3060 tcgttctatg ttcgtgttcg taatatgggt gctccgtcta acatcaacgt atcttctcag 3120 attggtcaac aggacatgca acagagctcc gtgagttcca gggcgcaaat gttcactagt 3180 gctaacgatg gcgagtactg ggttgaccag agcacgaact cgttgtggct caagttgcct 3240 ggtgcagtta tccaagacgc tgcgatcact gttcgttga 3279 12 1712 DNA Unknown fungus sp. or fungus infected gracilariopsis sp. 12 atgacaaact ataattatga caatttgaac tacaatcaac cggacctcat cccacctggc 60 catgattcag atcctgacta ctatattccg atgtactttg cggcaccatg ggtgatcgca 120 catggatatc gtggcaccag cgaccagtac tcttatggat ggtttttgga caatgtatcc 180 cagtcctaca caaacactgg cgatgatgca tgggctggtc agaaggattt ggcgtacatg 240 ggggcacaat gtgggccttt cgatcaacat tttgtgtatg aggctggaga tggacttgaa 300 gacgttgtga ccgcattctc ttatttgcaa ggcaaggaat atgagaacca gggactgaat 360 atacgttctg caatgcctcc gaagtacgtt ttcggatttt tccaaggcgt attcggagcc 420 acatcgctgc taagggacaa cttacctgcc ggcgagaaca acgtctcttt ggaagaaatt 480 gttgaaggat atcaaaatca gaacgtgcca tttgaaggtc ttgctgtgga tgttgatatg 540 caagatgact tgagagtgtt cactacgaga ccagcgtttt ggacggcaaa caaggtgggg 600 gaaggcggtg atccaaacaa caagtcagtg tttgagtggg cacatgacag gggccttgtc 660 tgccagacga atgtaacttg cttcttgaag aacgagaaaa atccttacga agtgaatcag 720 tcattgaggg agaagcagtt gtatacgaag agtgattcct tggacaacat tgattttgga 780 actactccag atgggcctag cgatgcgtac attggacact tagactacgg tggtggtgtg 840 gagtgtgatg cactattccc agactggggt cgaccagacg tggctcaatg gtggggcgat 900 aactacaaga aactattcag cattggtctc gatttcgtct ggcaagatat gacggtacct 960 gcgatgatgc cgcaccgact cggtgaccct gtcggcacaa attccggtga gacggcgccg 1020 ggctggccga atgataagga tccatccaac ggacgataca attggaagtc ttaccatccg 1080 caagtgctcg tgactgacat gaggtatgac gattacggaa gagatcccat tgttacgcaa 1140 cgcaatctcc atgcctacac tctttgtgag tctactagga gggaaggcat tgttggaaac 1200 gcagatagtc tgacgaagtt ccgccgcagc tatattatca gtcgtggagg ctacatcggt 1260 aatcagcact ttggtgggat gtgggtagga gacaactctt ctacggaaga ctacctcgca 1320 atgatggtta tcaacgttat caacatgaac atgtccggtg tcccgctcgt tggttccgat 1380 attggaggtt tcacggagca tgacaagaga aacccttgca caccggactt gatgatgaga 1440 tttgtgcagg ctggatgctt gctaccgtgg ttcaggaacc actacgatag gtggatcgag 1500 agcaagaaac acggaaagaa ctaccaagag ttgtacatgt accgcgacca cttggacgcc 1560 ttgagaagtt ttgtggaact ccgctatcgc tggcaggaag tgttatacac agccatgtat 1620 cagaatgctt tgaacgggaa gccgatcatc aaaacggtct ccatgtacaa caacgatatg 1680 aacgtcaaag atgctcagaa tgaccacttc ct 1712

Claims

1. A process of preparing a medium that comprises an anti-oxidant and at least one other component, the process comprising preparing in situ in the medium the anti-oxidant; and wherein the anti-oxidant is prepared from a glucan by use of recombinant DNA techniques.

2. A process according to claim 1, wherein the glucan comprises α-1,4 links.

3. A process according to claim 1 or claim 2 wherein the glucan is starch.

4. A process according to any one of the preceding claims wherein the glucan is a substrate for a recombinant enzyme such that contact of the glucan with the recombinant enzyme yields the anti-oxidant.

5. A process according to any one of claims 1 to 4, wherein the enzyme is a glucan lyase.

6. A process according to claim 5, wherein the enzyme is an α-1,4-glucan lyase.

7. A process according to claim 6, wherein the enzyme comprises any one of the sequences shown as SEQ ID Nos 1-6, or a variant, homologue or fragment thereof.

8. A process according to claim 7, wherein the enzyme is any one of the sequences shown as SEQ ID Nos 1-6.

9. A process according to any one of claims 5 to 8, wherein the enzyme is encoded by a nucleotide sequence comprising any one of the sequences shown as SEQ ID Nos 7-12, or a variant, homologue or fragment thereof.

10. A process according to claim 9, wherein the enzyme is encoded by a nucleotide sequence having any one of the sequences shown as SEQ ID Nos 7-12.

11. A process according to any one of the preceding claims, wherein the anti-oxidant is anhydrofructose.

12. A process according to claim 11, wherein the anti-oxidant is 1,5-D-anhydrofructose.

13. A process according to any one of the preceding claims, wherein the medium is, or is used in the preparation of, a foodstuff.

14. A process according to claim 13, wherein the foodstuff is a beverage.

15. A process according to claim 14, wherein the beverage is an alcoholic beverage.

16. A process according to claim 14, wherein the beverage is a wine.

17. A process according to any one of the preceding claims, wherein the anti-oxidant is prepared in situ in the component and is then released into the medium.

18. A process according to any one of the preceding claims, wherein the component is a plant or a part thereof.

19. A process according to claim 18, wherein the component is all or part of a cereal or a fruit.

20. A process according to claim 20, wherein the component is all or part of a grape.

21. A process of preparing a medium that comprises an anti-oxidant and at least one other component, the process comprising preparing in situ in the medium the anti-oxidant; and wherein the anti-oxidant is prepared by use of a recombinant glucan lyase.

22. A process according to claim 21 wherein the glucan lyase is that as defined in any one of claims 6 to 10.

23. A medium prepared by the process according to any one of the preceding claims.

24. Use of anhydrofructose as an anti-oxidant for a medium comprising at least one other component, wherein the anhydrofructose is prepared in situ in the medium.

25. Use of anhydrofructose as a means for imparting or improving stress tolerance in a plant, wherein the anhydrofructose is prepared in situ in the plant.

26. Use of anhydrofructose as a means for imparting or improving the transformation of a grape, wherein the anhydrofructose is prepared in situ in the grape.

27. Use of glucan lyase as a means for imparting or improving stress tolerance in a plant, wherein the glucan lyase is prepared in situ in the plant.

28. Use of glucan lyase as a means for imparting or improving the transformation of a grape, wherein the glucan lyase is prepared in situ in the grape.

29. Use of a nucleotide sequence coding for a glucan lyase as a means for imparting or improving stress tolerance in a plant, wherein the nucleotide sequence is expressed in situ in the plant.

30. Use of a nucleotide sequence coding for a glucan lyase as a means for imparting or improving the transformation of a grape, wherein the nucleotide sequence is expressed in situ in the grape.

31. A process or medium substantially as described herein.