TW202242141A - Test kit for identifying all-hermaphrodite papaya and testing method for identifying all-hermaphrodite papaya derived from taiwan seed station no. 7 and its progeny - Google Patents

Test kit for identifying all-hermaphrodite papaya and testing method for identifying all-hermaphrodite papaya derived from taiwan seed station no. 7 and its progeny Download PDF

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TW202242141A
TW202242141A TW110113882A TW110113882A TW202242141A TW 202242141 A TW202242141 A TW 202242141A TW 110113882 A TW110113882 A TW 110113882A TW 110113882 A TW110113882 A TW 110113882A TW 202242141 A TW202242141 A TW 202242141A
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papaya
hermaphrodite
identifying
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descendants
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TWI784486B (en
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陳哲仁
松村英生
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行政院農業委員會種苗改良繁殖場
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Abstract

The present disclosure provides a test kit for identifying all-hermaphrodite papaya, which is used for identifying all-hermaphrodite papaya derived from Taiwan Seed Station No. 7 and its progeny and detecting whether a papaya sample has a nucleotide sequence of SEQ ID NO: 1. The test kit for identifying all-hermaphrodite papaya includes a first primer set and a second primer set. The first primer set includes a forward primer of SEQ ID NO: 2 and a reverse primer of SEQ ID NO: 3. The second primer set includes a forward primer of SEQ ID NO: 4 and a reverse primer of SEQ ID NO: 5. The present disclosure also provides a testing method for identifying all-hermaphrodite papaya derived from Taiwan Seed Station no. 7 and its progeny using the aforementioned test kit.

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用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記、鑑別全兩性木瓜的檢驗套組及鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法Molecular markers for identifying papaya seedling No. 7 and its descendants of hermaphrodite papaya, test kits for identifying papaya seedling 7 and its descendants of hermaphrodite papaya

本發明是關於一種用於鑑別木瓜性別的分子標記、鑑別木瓜性別的檢驗套組及鑑別木瓜性別的方法,特別是關於一種用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記、鑑別全兩性木瓜的檢驗套組及鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法。The present invention relates to a molecular marker for identifying the sex of papaya, a test set for identifying the sex of papaya, and a method for identifying the sex of papaya, in particular to a molecular marker for identifying papaya seedling No. 7 and its descendants of all hermaphrodite papaya, A test set for differentiating hermaphrodite papaya and a method for distinguishing hermaphrodite papaya seedling No. 7 and its descendants.

木瓜 ( Carica papaya),又稱番木瓜、石瓜、蓬生果等,為原產於熱帶美洲之軟木植果樹。木瓜富含胡蘿蔔素、維生素C、高量酵素及多種有益人體健康的成分,使其種植量在世界各地穩定增長。 Papaya ( Carica papaya ), also known as papaya, stone melon, pomegranate fruit, etc., is a softwood fruit tree native to tropical America. Papaya is rich in carotene, vitamin C, a high amount of enzymes and a variety of ingredients beneficial to human health, making its planting volume grow steadily all over the world.

木瓜的性別形式是栽培中最重要的特徵之一,其具有雄株、雌株、兩性株等三種基本樹型。其中,雌株只開雌花,需雄株或兩性株提供花粉以使果實正常發育;雄株一般只開雄花而不結果,多做為授粉樹之用;兩性株則開兩性花,其果實多為洋梨形或長形,並具有小果腔之特性,使兩性株木瓜具有較佳的經濟價值,並廣受木瓜栽培業者的歡迎。The gender form of papaya is one of the most important characteristics in cultivation. It has three basic tree types: male plant, female plant, and hermaphrodite plant. Among them, female plants only open female flowers, and male plants or hermaphrodite plants need to provide pollen to make the fruit develop normally; male plants generally only open male flowers but not fruit, and are mostly used as pollination trees; hermaphrodite plants open hermaphrodite flowers, and their fruits are more It is pear-shaped or long-shaped, and has the characteristics of a small fruit cavity, which makes the hermaphrodite papaya have better economic value and is widely welcomed by papaya cultivators.

為了種植與培育兩性株木瓜,在木瓜栽培過程中多以人力辨識並去除雌株,以獲得更高比例的兩性株。然而,木瓜從萌芽、生長至花器形成前,不同性別的植株在葉型、莖幹顏色、株型等各種外部型態皆大致相同,並無法單純以植株的外部型態進行區分,而須等到植株開花後根據其花型及花序始可辨認性別,如此一來不僅需將全數的木瓜幼苗栽種至成熟並開花,使其在苗木成本上居高不下,亦須付出大量的勞力支出,在經濟效益方面並不理想。再者,木瓜幼苗在不同環境培養下將影響其性狀表現,在環境溫度過高或低的情形下甚至會有退化、畸形的現象產生,致使以人力辨識去除雌株的準確度及效益仍有待商榷。In order to plant and cultivate hermaphrodite papaya, during the papaya cultivation process, human efforts are often used to identify and remove female plants in order to obtain a higher proportion of hermaphrodite plants. However, from germination, growth to the formation of flower organs of papaya, plants of different sexes are roughly the same in various external forms such as leaf shape, stem color, and plant shape. After the plant blooms, the gender can be identified according to its flower shape and inflorescence. In this way, not only must all the papaya seedlings be planted until they mature and bloom, so that the cost of the seedlings remains high, and a large amount of labor expenditure is also required. Benefits are not ideal. Furthermore, the traits of papaya seedlings will be affected by cultivation in different environments, and degeneration and deformity may even occur when the environmental temperature is too high or low, so that the accuracy and benefits of human identification and removal of female plants are still to be determined. Discuss.

另外,在一般兩性株木瓜自交或相互雜交所產生的後代中,兩性株的數量約佔67%,木瓜栽培業者同樣必須一次密植2至3株木瓜幼苗,待定植3到4個月後形成花器,始能由花器構造確認其性別。因此,透過兩性株木瓜自交或相互雜交的方式,亦無法獲得100%之兩性株後代。In addition, among the offspring produced by selfing or intercrossing of hermaphrodite papaya plants, the number of hermaphrodite plants accounts for about 67%. Papaya cultivators must also plant 2 to 3 papaya seedlings at a time, and they will form after 3 to 4 months after planting. Flower vessels can only confirm their gender by the structure of the flower vessel. Therefore, it is impossible to obtain 100% offspring of hermaphrodites through selfing or mutual hybridization of hermaphrodites.

為了解決前述問題,與木瓜性別相關之分子標記遂蓬勃發展,以在木瓜幼苗尚無法以目視辨識性別的情形下鑑定其性別。然而,現行之與木瓜性別相關之分子標記仍難以大量地逐一鑑定木瓜性別,並鮮少實際應用於木瓜種苗生產。In order to solve the aforementioned problems, molecular markers related to papaya sex have been vigorously developed to identify the sex of papaya seedlings when they cannot be visually identified. However, the current molecular markers related to the sex of papaya are still difficult to identify the sex of papaya one by one in a large number, and are rarely used in the production of papaya seedlings.

為了達成種植與培育100%兩性株木瓜的訴求,行政院農業委員會種苗改良繁殖場進一步選育而得可獲得100%之兩性株後代之木瓜品種-木瓜種苗7號。然而,在將木瓜種苗7號之全兩性特性導入其它木瓜品種後,仍無法有效率地區別木瓜種苗7號的後裔中之兩性木瓜與全兩性木瓜,使其在後續應用中仍多有受限。In order to meet the demands of planting and cultivating 100% hermaphrodite papaya, the Seedling Improvement and Breeding Farm of the Agricultural Committee of the Executive Yuan further selected and bred a papaya variety that can obtain 100% hermaphrodite offspring - Papaya Seedling No. 7. However, after introducing the hermaphroditism of Papaya Seedling No. 7 into other papaya varieties, it is still impossible to effectively distinguish the hermaphrodite papaya and the fully hermaphrodite papaya in the descendants of Papaya Seedling No. 7, which still limits its subsequent application. .

有鑑於此,如何發展一種鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,以有效地於木瓜品種選拔早期階段挑選具有較佳的經濟價值的全兩性木瓜植株,實為本領域之技術人員所共同努力的目標。In view of this, how to develop a method for distinguishing papaya seedling No. 7 and its descendants of papaya papaya fully hermaphrodite, so as to effectively select papaya papaya papaya plants with better economic value in the early stage of selection of papaya varieties, is a technology in the art The goal of the people's joint efforts.

本發明之一態樣在於提供一種用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記,包含如SEQ ID NO: 1所示之一核苷酸序列,其中如SEQ ID NO: 1所示之核苷酸序列包含一單去氫抗壞血酸還原酶4 (monodehydroascorbate reductase 4, MDAR4)之單核苷酸多型性 (single nucleotide polymorphism, SNP)基因座。One aspect of the present invention is to provide a molecular marker for distinguishing papaya seedling No. 7 and its descendants of fully hermaphrodite papaya, comprising a nucleotide sequence as shown in SEQ ID NO: 1, wherein such as SEQ ID NO: 1 The nucleotide sequence shown contains a single nucleotide polymorphism (SNP) locus of monodehydroascorbate reductase 4 (MDAR4).

本發明之另一態樣在於提供一種鑑別全兩性木瓜的檢驗套組,其係用以鑑別木瓜種苗7號及其後裔之全兩性木瓜,包含一第一引子組以及一第二引子組。第一引子組包含一如SEQ ID NO: 2所示之正向引子及一如SEQ ID NO: 3所示之反向引子。第二引子組包含一如SEQ ID NO: 4所示之正向引子及一如SEQ ID NO: 5所示之反向引子。其中,所述之鑑別全兩性木瓜的檢驗套組係用以檢測一木瓜樣本是否具有如SEQ ID NO: 1所示之核苷酸序列。Another aspect of the present invention is to provide a test kit for identifying hermaphrodite papaya, which is used to identify papaya seedling No. 7 and its descendants, including a first primer set and a second primer set. The first primer set includes a forward primer as shown in SEQ ID NO: 2 and a reverse primer as shown in SEQ ID NO: 3. The second primer set includes a forward primer as shown in SEQ ID NO: 4 and a reverse primer as shown in SEQ ID NO: 5. Wherein, the test kit for identifying fully hermaphrodite papaya is used to detect whether a papaya sample has the nucleotide sequence shown in SEQ ID NO: 1.

依據前述之鑑別全兩性木瓜的檢驗套組,可更包含一反轉錄聚合酶連鎖反應所需之試劑。According to the above-mentioned test kit for distinguishing all hermaphrodite papaya, it may further include a reagent required for reverse transcription polymerase chain reaction.

本發明之再一態樣在於提供一種鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,包含下述步驟。提供一木瓜樣本的一待測核酸樣本。提供一如前段所述之鑑別全兩性木瓜的檢驗套組。進行一第一核酸增幅步驟,其係以所述之待測核酸樣本為模板並利用前述之第一引子組進行一聚合酶連鎖反應,以獲得一第一反應產物。進行一第二核酸增幅步驟,其係以所述之待測核酸樣本為模板並利用前述之第二引子組進行一聚合酶連鎖反應,以獲得一第二反應產物。進行一偵測步驟,其係偵測所述之第一反應產物是否具有一第一擴增子產物,並偵測所述之第二反應產物是否具有一第二擴增子產物。其中,當第一反應產物不具有第一擴增子產物且第二反應產物具有第二擴增子產物時,所述之木瓜樣本將被判斷為一全兩性木瓜樣本。Yet another aspect of the present invention is to provide a method for identifying papaya seedling No. 7 and its descendants of hermaphrodite papaya, which includes the following steps. A test nucleic acid sample of a papaya sample is provided. A test kit for differentiating hermaphrodite papaya as described in the preceding paragraph is provided. Carrying out a first nucleic acid amplification step, which uses the nucleic acid sample to be tested as a template and uses the aforementioned first primer set to carry out a polymerase chain reaction to obtain a first reaction product. A second nucleic acid amplification step is carried out, which uses the nucleic acid sample to be detected as a template and uses the aforementioned second primer set to perform a polymerase chain reaction to obtain a second reaction product. A detection step is performed to detect whether the first reaction product has a first amplicon product, and detect whether the second reaction product has a second amplicon product. Wherein, when the first reaction product does not have the first amplicon product and the second reaction product has the second amplicon product, the papaya sample will be judged as a fully amphoteric papaya sample.

依據前述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中所述之第一擴增子產物的分子量可等於403 bp,所述之第二擴增子產物的分子量可等於282 bp。According to the above-mentioned method for identifying papaya seedling No. 7 and its offspring's all-amptersexual papaya, the molecular weight of the first amplicon product can be equal to 403 bp, and the molecular weight of the second amplicon product can be equal to 282 bp .

依據前述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中前述之待測核酸樣本可為DNA或RNA。According to the aforementioned method for identifying papaya seedling No. 7 and hermaphrodite papaya of its descendants, the aforementioned nucleic acid sample to be tested can be DNA or RNA.

依據前述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中當前述之待測核酸樣本為RNA時,鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法可更包含進行一反轉錄步驟,其係對前述之待測核酸樣本進行一反轉錄反應。According to the aforementioned method for identifying the hermaphrodite papaya of papaya seedling No. 7 and its descendants, when the aforementioned nucleic acid sample to be tested is RNA, the method for identifying the hermaphrodite papaya of papaya seedling No. 7 and its descendants may further include performing a reverse reaction The transcription step is to perform a reverse transcription reaction on the aforementioned nucleic acid sample to be tested.

依據前述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中前述之偵測步驟可以膠體電泳系統進行。According to the above-mentioned method for identifying papaya seedling No. 7 and its offspring's all-hermaphrodite papaya, the above-mentioned detection step can be performed by a gel electrophoresis system.

依據前述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中前述之木瓜樣本可為木瓜種子、木瓜葉片或木瓜花器。According to the aforementioned method for identifying papaya seedling No. 7 and hermaphrodite papaya of its descendants, the aforementioned papaya samples can be papaya seeds, papaya leaves or papaya flowers.

藉此,本發明之鑑別全兩性木瓜的檢驗套組以及鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法透過檢測木瓜樣本中是否具有本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記,可快速且準確地於木瓜品種選拔早期階段挑選具有較佳的經濟價值之具有木瓜種苗7號之全兩性特性的全兩性木瓜植株,進而降低選種及日後栽種的人力成本,並具有相關市場的應用潛力。In this way, the test kit for identifying all-hermaphrodite papaya and the method for identifying all-hermaphrodite papaya seedling No. 7 and its descendants of the present invention detect whether the papaya sample has the method for identifying papaya seedling No. 7 and its descendants of the present invention. Molecular markers of hermaphrodite papaya can quickly and accurately select papaya species with better economic value in the early stage of papaya variety selection, which has the hermaphrodite characteristics of papaya seedling No. 7, thereby reducing the manpower for seed selection and planting in the future cost, and has application potential in relevant markets.

本發明提供一種鑑別全兩性木瓜的檢驗套組及鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其係透過檢測木瓜樣本中是否具有本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記,可快速且準確地在木瓜品種選拔早期階段挑選具有較佳的經濟價值之具有木瓜種苗7號之全兩性特性的全兩性木瓜植株,並可進一步確保所鑑定而得之全兩性木瓜植株可透過主要生物學方法而獲得100%之兩性株後代。The present invention provides a test set for identifying all hermaphrodite papaya and a method for identifying papaya seedling No. 7 and its descendants of hermaphrodite papaya, which is used to identify papaya seedling No. 7 and its descendants by detecting whether there are papaya samples of the present invention The molecular markers of hermaphrodite papaya can quickly and accurately select papaya plants with better economic value in the early stage of papaya variety selection and have the full hermaphrodite characteristics of papaya seedling No. 7, and can further ensure that the identified All hermaphrodite papaya plants can obtain 100% hermaphrodite offspring through main biological methods.

本發明所述之木瓜可包含番木瓜 ( Carica papayaL.)之佛羅里達種、日昇種、種苗7號種或與種苗7號種雜交所得的後裔,或是前述之後裔再行與佛羅里達種、日昇種、種苗7號種等其他木瓜品種進行雜交育種而得的後裔。較佳地,本發明所述之全兩性木瓜為種苗7號種之木瓜或其後裔之全兩性木瓜。 The papaya of the present invention may comprise the Florida species, Risheng species, seedling No. 7 species of papaya ( Carica papaya L.) or the offspring obtained by hybridizing with seedling No. 7 species, or the aforementioned descendants are further mixed with Florida species, The descendants of Rishengzhong, Zhongmiao No.7 and other papaya varieties through cross breeding. Preferably, the hermaphrodite papaya described in the present invention is the papaya of seedling No. 7 species or hermaphrodite papaya of its descendants.

本發明所述之木瓜性別是指雄性、雌性、兩性及全兩性。詳細而言,依據Storey在1941年及1953年提出的理論,木瓜植株的性別 (雄株、雌株及兩性株)分別由3個等位基因控制:M 1(雄性,顯性基因)、M 2(兩性,顯性基因)及m (雌性,隱性基因),其中mm、mM 1和mM 2的基因型為雌性,而顯性等位基因 (M 1M 1、M 1M 2與M 2M 2)組成的基因型皆具有致死性。通常兩性株自交所產生的後代其兩性株及雌性株的比例為2:1,而在兩性株與雌性株雜交所產生的後代中,兩性株與雌性株的比例則為1:1。再者,本發明所述之全兩性木瓜係指其自交所產生並可正常生長的後代植株皆為兩性株。 The sex of papaya in the present invention refers to male, female, hermaphrodite and all hermaphrodites. In detail, according to the theory proposed by Storey in 1941 and 1953, the sex of papaya plants (male, female and hermaphrodite) is controlled by three alleles: M 1 (male, dominant gene), M 2 (bisexual, dominant gene) and m (female, recessive gene), where the genotypes of mm, mM 1 and mM 2 are female, while the dominant alleles (M 1 M 1 , M 1 M 2 and M 2 M 2 ) genotypes are lethal. Usually the ratio of hermaphrodites to females is 2:1 in the offspring produced by selfing hermaphrodites, and the ratio of hermaphrodites to females in the offspring produced by hybridization of hermaphrodites and females is 1:1. Furthermore, the all-hermaphroditic papaya in the present invention means that the progeny plants produced by selfing and capable of normal growth are all hermaphrodites.

下述將更詳細討論本發明各實施方式。然而,此實施方式可為各種發明概念的應用,可被具體實行在各種不同的特定範圍內。特定的實施方式是僅以說明為目的,且不受限於揭露的範圍。Various embodiments of the invention are discussed in more detail below. However, this embodiment may be an application of various inventive concepts, and may be embodied in various specific ranges. The specific embodiments are for illustrative purposes only and do not limit the scope of the disclosure.

[本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記][The present invention is used to distinguish the molecular marker of papaya seedling No. 7 and its offspring's all-hermaphrodite papaya]

本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記包含如SEQ ID NO: 1所示之一核苷酸序列,其中如SEQ ID NO: 1所示之核苷酸序列包含一單去氫抗壞血酸還原酶4 (monodehydroascorbate reductase 4,後續將以「MDAR4」代稱之以簡化說明)之單核苷酸多型性 (single nucleotide polymorphism, SNP)基因座。MDAR4為植物參與抗壞血酸依賴性之過氧化氫 (H 2O 2)清除途徑的酶之一,並與種子的發芽有關,並推論其在木瓜中也扮演類似的功能,而參與木瓜種子的發芽與生長。 The molecular marker of the present invention for distinguishing papaya seedling No. 7 and its descendants of fully hermaphrodite papaya comprises a nucleotide sequence as shown in SEQ ID NO: 1, wherein the nucleotide sequence as shown in SEQ ID NO: 1 Contains a single nucleotide polymorphism (single nucleotide polymorphism, SNP) locus of monodehydroascorbate reductase 4 (monodehydroascorbate reductase 4, which will be referred to as "MDAR4" for simplicity in the following). MDAR4 is one of the enzymes that plants participate in the ascorbic acid-dependent hydrogen peroxide (H 2 O 2 ) scavenging pathway, and is related to seed germination, and it is deduced that it also plays a similar function in papaya, and is involved in papaya seed germination and grow.

詳細而言,本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記為包含SNP基因座之MDAR4的基因編碼序列 (Coding sequence, CSD),如表一所示,相較於木瓜細菌人工染色體 (Bacterial Artificial Chromosome, BAC)基因庫編號AC238599.1,本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記相較於正常之MDAR4的基因編碼序列包含3個插入缺失SNP位點,該插入缺失SNP位點將導致轉譯而得的胺基酸序列中的Val362丟失,並影響木瓜種子的發芽與生長。 表一 木瓜BAC編號 BAC序列變異位置 參考核苷酸 SEQ ID NO: 1序列變異類型 AC238599.1 22,431 bp至22,433 bp GTA 缺失 In detail, the molecular marker used to identify papaya seedling No. 7 and its progeny's all-hermaphrodite papaya of the present invention is the gene coding sequence (Coding sequence, CSD) of MDAR4 comprising the SNP locus, as shown in Table 1, compared In the papaya Bacterial Artificial Chromosome (BAC) gene bank number AC238599.1, the molecular marker of the present invention used to identify papaya seedling No. 7 and its descendants' fully hermaphrodite papaya compared with the normal MDAR4 gene coding sequence contains Three insertion-deletion SNP sites, the insertion-deletion SNP sites will lead to the loss of Val362 in the translated amino acid sequence, and affect the germination and growth of papaya seeds. Table I Papaya BAC Number BAC sequence variation position reference nucleotide SEQ ID NO: 1 sequence variation type AC238599.1 22,431 bp to 22,433 bp GTA missing

因此,當木瓜樣本的X染色體包含如SEQ ID NO: 1所示之核苷酸序列時,若該木瓜樣本不是兩性株且不具有正常之MDAR4的基因編碼序列,該木瓜樣本在其種子階段即無法正常發芽與生長。再者,當該木瓜樣本為一正常生長之全兩性株時,其自交所得的雌性株後代將會因為MDAR4基因的表達缺陷的情形而具有種子致死性,是以前述自交所得並可正常生長之後代將皆為具有木瓜種苗7號之全兩性特性的全兩性株後代 (即為本發明所稱之全兩性木瓜植株)。由此可見,本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記可有效且準確地鑑別而得木瓜種苗7號之全兩性木瓜植株,並可進一步應用於挑選木瓜種苗7號之後裔中的全兩性木瓜植株,以有效地於木瓜品種選拔早期階段挑選具有較佳的經濟價值之具有木瓜種苗7號之全兩性特性的全兩性木瓜植株,並具有相關市場的應用潛力。Therefore, when the X chromosome of the papaya sample comprises the nucleotide sequence shown in SEQ ID NO: 1, if the papaya sample is not a hermaphrodite and does not have a normal MDAR4 gene coding sequence, the papaya sample will be in its seed stage. Unable to germinate and grow normally. Furthermore, when the papaya sample is a fully hermaphroditic plant with normal growth, the offspring of the female plant obtained by selfing will have seed lethality due to the defective expression of the MDAR4 gene. The offspring after growth will all be all hermaphrodite offspring with the all hermaphroditism of No. 7 papaya seedlings (being the all hermaphrodite plant of the present invention). Thus it can be seen that the molecular markers of the present invention used to identify papaya seedling No. 7 and its descendants' fully hermaphrodite papaya plants can be effectively and accurately identified to obtain papaya seedling No. 7 fully hermaphrodite papaya plants, and can be further applied to selection of papaya seedlings All hermaphrodite papaya plants in the descendants of No. 7, so as to effectively select papaya papaya plants with better economic value at the early stage of papaya variety selection, which have the full hermaphrodite characteristics of papaya seedling No. 7, and have application potential in related markets .

再者,本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記除包含如SEQ ID NO: 1所示之核苷酸序列本身之外,亦可包含其衍生之產物且具有如SEQ ID NO: 1所示之核苷酸序列者,例如PCR產物、HRM產物、RFLP產物、由上述序列轉錄的RNA或由上述序列轉譯而得的多肽等,且本發明並不以此為限。Furthermore, the molecular markers of the present invention used to identify papaya seedling No. 7 and its descendants of the all-hermaphroditic papaya include the nucleotide sequence itself as shown in SEQ ID NO: 1, and may also include derivatives thereof and Those having the nucleotide sequence shown in SEQ ID NO: 1, such as PCR products, HRM products, RFLP products, RNA transcribed from the above sequence or polypeptides translated from the above sequence, etc., and the present invention does not refer to this limit.

另外,在本說明書中進一步將正常之MDAR4的基因編碼序列以「Gs等位基因」稱之,並將本發明之表達具有缺陷之MDAR4的基因編碼序列 (即SEQ ID NO: 1所示之核苷酸序列)以「本發明之gs等位基因」稱之,以簡化相關說明。In addition, in this specification, the gene coding sequence of normal MDAR4 is further referred to as "Gs allele", and the gene coding sequence of the present invention expressing defective MDAR4 (ie, the nucleus shown in SEQ ID NO: 1 Nucleotide sequence) is referred to as "gs allele of the present invention" to simplify the relevant description.

[本發明之鑑別全兩性木瓜的檢驗套組][The test set for differentiating all hermaphrodite papaya of the present invention]

本發明之鑑別全兩性木瓜的檢驗套組係用以鑑別木瓜種苗7號及其後裔之全兩性木瓜,並包含一第一引子組以及一第二引子組。第一引子組包含一如SEQ ID NO: 2所示之正向引子及一如SEQ ID NO: 3所示之反向引子。第二引子組包含一如SEQ ID NO: 4所示之正向引子及一如SEQ ID NO: 5所示之反向引子。The test set for differentiating hermaphrodite papaya of the present invention is used to identify hermaphrodite papaya seedling No. 7 and its descendants, and includes a first primer set and a second primer set. The first primer set includes a forward primer as shown in SEQ ID NO: 2 and a reverse primer as shown in SEQ ID NO: 3. The second primer set includes a forward primer as shown in SEQ ID NO: 4 and a reverse primer as shown in SEQ ID NO: 5.

詳細而言,在本發明之鑑別全兩性木瓜的檢驗套組中,第一引子組與第二引子組是分別利用引子設計程式BatchPrimer3 v1.0設計而得,其中第一引子組的正向引子 (如SEQ ID NO: 2所示之正向引子)與反向引子 (如SEQ ID NO: 3所示之反向引子)係針對Gs等位基因設計而得,而第二引子組的正向引子 (如SEQ ID NO: 4所示之正向引子)與反向引子 (如SEQ ID NO: 5所示之反向引子)則係針對本發明之gs等位基因設計而得,且本發明之鑑別全兩性木瓜的檢驗套組係用以檢測一木瓜樣本是否具有如SEQ ID NO: 1所示之核苷酸序列。In detail, in the test set for identifying all-hermaphrodite papaya of the present invention, the first primer set and the second primer set are designed by using the primer design program BatchPrimer3 v1.0 respectively, wherein the forward primer of the first primer set (the forward primer shown in SEQ ID NO: 2) and the reverse primer (the reverse primer shown in SEQ ID NO: 3) are designed for the Gs allele, and the forward primer of the second primer group The primer (the forward primer shown in SEQ ID NO: 4) and the reverse primer (the reverse primer shown in SEQ ID NO: 5) are designed for the gs allele of the present invention, and the present invention The test kit for identifying hermaphrodite papaya is used to detect whether a papaya sample has the nucleotide sequence shown in SEQ ID NO:1.

具體來說,當使用本發明之鑑別全兩性木瓜的檢驗套組鑑定木瓜樣本時,由於木瓜種苗7號及其後裔之全兩性木瓜植株在MDAR4的基因編碼序列具有缺失,第一引子組的正向引子與反向引子將無法與木瓜樣本的待測核酸樣本結合而得到第一引子組的第一擴增子產物。反之,由於木瓜種苗7號及其後裔之全兩性木瓜植株包含如SEQ ID NO: 1所示之核苷酸序列 (即本發明之gs等位基因),第二引子組的正向引子與反向引子將可和木瓜樣本的待測核酸樣本結合而得到第二引子組的第二擴增子產物,進而使本發明之鑑別全兩性木瓜的檢驗套組可快速且準確地於木瓜品種選拔早期階段挑選具有較佳的經濟價值的木瓜種苗7號之全兩性木瓜植株,並可進一步應用於挑選木瓜種苗7號之後裔中的全兩性木瓜植株,進而降低選種及日後栽種的人力成本,並具有相關市場的應用潛力。Specifically, when papaya samples are identified using the test kit for identifying fully hermaphrodite papaya of the present invention, since papaya seedling No. 7 and hermaphrodite papaya plants of its descendants have a deletion in the gene coding sequence of MDAR4, the positive The forward primer and the reverse primer will not be able to combine with the nucleic acid sample of the papaya sample to obtain the first amplicon product of the first primer set. On the contrary, because the papaya seedling No. 7 and its progeny's fully hermaphrodite papaya plants comprise the nucleotide sequence shown in SEQ ID NO: 1 (i.e. the gs allele of the present invention), the forward primer and reverse primer of the second primer group The primers can be combined with the tested nucleic acid sample of the papaya sample to obtain the second amplicon product of the second primer set, so that the test kit for identifying all-hermaphrodite papaya of the present invention can be quickly and accurately used in the early stage of papaya variety selection. Phase selection of papaya seedlings with better economic value No. 7 all-hermaphrodite papaya plants can be further applied to selection of all-hermaphrodite papaya plants in descendants of papaya seedling No. 7, thereby reducing labor costs for seed selection and planting in the future, and It has application potential in relevant markets.

另外,本發明之鑑別全兩性木瓜的檢驗套組可視需求而包含一反轉錄聚合酶連鎖反應所需之試劑,但本發明並不以此為限。In addition, the test kit for identifying all-hermaphrodite papaya of the present invention may include reagents required for reverse transcription polymerase chain reaction as required, but the present invention is not limited thereto.

[本發明之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法][The method of distinguishing papaya seedling No. 7 of the present invention and its progeny's all-hermaphrodite papaya]

請參照第1圖,其係繪示本發明一實施方式之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法100的步驟流程圖。鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法100包含步驟110、步驟120、步驟130、步驟140以及步驟150。Please refer to FIG. 1 , which is a flow chart showing the steps of a method 100 for identifying papaya seedling No. 7 and its offspring's all-hermaphrodite papaya according to an embodiment of the present invention. The method 100 for identifying the hermaphrodite papaya seedling No. 7 and its descendants includes step 110 , step 120 , step 130 , step 140 and step 150 .

步驟110為提供一木瓜樣本的一待測核酸樣本。詳細而言,木瓜樣本可為木瓜種子或木瓜葉片,亦可在其花器出現後以其做為木瓜樣本,但本發明並不以此為限。再者,待測核酸樣本可為DNA或RNA。Step 110 is to provide a test nucleic acid sample of a papaya sample. Specifically, the papaya sample can be papaya seeds or papaya leaves, and can also be used as a papaya sample after the flowers appear, but the present invention is not limited thereto. Furthermore, the nucleic acid sample to be tested can be DNA or RNA.

步驟120為提供一鑑別全兩性木瓜的檢驗套組。具體而言,鑑別全兩性木瓜的檢驗套組可為本發明之包含一第一引子組以及一第二引子組的鑑別全兩性木瓜的檢驗套組,而其詳細內容請參前段所述,在此將不再贅述。Step 120 is to provide a test kit for identifying all hermaphrodite papayas. Specifically, the test set for identifying all-hermaphroditic papaya can be the test set for identifying all-hermaphroditic papaya according to the present invention, which includes a first primer set and a second primer set, and its details can be found in the preceding paragraph. This will not be repeated.

步驟130為進行一第一核酸增幅步驟,其係以所述之待測核酸樣本為模板並利用第一引子組而進行一聚合酶連鎖反應,以獲得一第一反應產物。Step 130 is to perform a first nucleic acid amplification step, which is to use the nucleic acid sample to be detected as a template and use the first primer set to perform a polymerase chain reaction to obtain a first reaction product.

步驟140為進行一第二核酸增幅步驟,其係以所述之待測核酸樣本為模板並利用第二引子組進行一聚合酶連鎖反應,以獲得一第二反應產物。Step 140 is to perform a second nucleic acid amplification step, which is to use the nucleic acid sample to be detected as a template and use the second primer set to perform a polymerase chain reaction to obtain a second reaction product.

步驟150為進行一偵測步驟,其係偵測所述之第一反應產物是否具有一第一擴增子產物,並偵測所述之第二反應產物是否具有一第二擴增子產物。詳細而言,偵測步驟係以膠體電泳系統進行,且第一擴增子產物的分子量等於403 bp,第二擴增子產物的分子量等於282 bp。具體而言,第一擴增子產物是對應Gs等位基因的聚合酶連鎖反應擴增產物,而第二擴增子產物則是對應gs等位基因的聚合酶連鎖反應擴增產物,是以本發明之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法100透過偵測第一反應產物是否具有第一擴增子產物以及偵測第二反應產物是否具有第二擴增子產物的方式,可快速且有效地鑑別木瓜樣本是否為木瓜種苗7號之全兩性木瓜植株,並可進一步應用於挑選木瓜種苗7號之後裔中的全兩性木瓜植株,進而降低選種及日後栽種的人力成本,並具有相關市場的應用潛力。Step 150 is to perform a detection step, which is to detect whether the first reaction product has a first amplicon product, and detect whether the second reaction product has a second amplicon product. Specifically, the detection step is performed by a gel electrophoresis system, and the molecular weight of the first amplicon product is equal to 403 bp, and the molecular weight of the second amplicon product is equal to 282 bp. Specifically, the first amplicon product is the PCR amplification product corresponding to the Gs allele, and the second amplicon product is the PCR amplification product corresponding to the gs allele, so that The method 100 of the present invention for identifying papaya seedling No. 7 and its all-hermaphrodite papaya descendants is by detecting whether the first reaction product has the first amplicon product and detecting whether the second reaction product has the second amplicon product , can quickly and effectively identify whether the papaya sample is the hermaphrodite papaya plant of No. 7 papaya seedling, and can be further applied to select the hermaphrodite papaya plant in the descendants of papaya seedling No. 7, thereby reducing the labor cost of seed selection and planting in the future , and has application potential in related markets.

請參照第2圖,其係繪示本發明另一實施方式之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法200的步驟流程圖。鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法200包含步驟210、步驟220、步驟230、步驟240、步驟250以及步驟260,其中步驟210、步驟220、步驟240、步驟250以及步驟260與第1圖之步驟110、步驟120、步驟130、步驟140及步驟150相同,在此將不再贅述。Please refer to FIG. 2 , which is a flow chart showing the steps of a method 200 for identifying papaya seedling No. 7 and its descendants' all-hermaphrodite papaya according to another embodiment of the present invention. The method 200 for identifying papaya seedling No. 7 and its progeny's all-hermaphrodite papaya comprises steps 210, 220, 230, 240, 250 and 260, wherein steps 210, 220, 240, 250 and 260 are the same as Step 110 , step 120 , step 130 , step 140 and step 150 in FIG. 1 are the same and will not be repeated here.

步驟230為進行一反轉錄步驟,其係對所述之待測核酸樣本進行一反轉錄反應。詳細而言,當所述之待測核酸樣本為RNA時,RNA將先進行反轉錄反應而獲得對應之cDNA,以進行後續的聚合酶連鎖反應。藉此,可使本發明之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法200的應用廣度進一步提升。Step 230 is performing a reverse transcription step, which is to perform a reverse transcription reaction on the nucleic acid sample to be tested. In detail, when the nucleic acid sample to be detected is RNA, the RNA will first undergo reverse transcription reaction to obtain corresponding cDNA for subsequent polymerase chain reaction. In this way, the application range of the method 200 of the present invention for identifying papaya seedling No. 7 and hermaphrodite descendants thereof can be further improved.

[試驗例][Test example]

一、木瓜樣本1. Papaya sample

本發明所使用之木瓜植株係於屏東種苗研究中心種植而得,其中木瓜植株的品種包含雄性之佛羅里達種,雌性之日陞種與佛羅里達種,正常兩性之日陞種和全兩性之種苗7號種,並以單一木瓜種子或木瓜葉片作為本發明之木瓜樣本,以取得對應之待測核酸樣本而進行後續實驗。The papaya plants used in the present invention are grown in the Pingtung Seedling Research Center, wherein the varieties of papaya plants include the male Florida species, the female Sunrise species and Florida species, the normal hermaphrodite Sunrise species and all hermaphrodite seedlings7 No. species, and a single papaya seed or papaya leaf is used as the papaya sample of the present invention to obtain the corresponding nucleic acid sample to be tested for subsequent experiments.

本試驗中所使用待測核酸樣本可分為DNA與RNA。當待測核酸樣本選用DNA時,單一木瓜種子或40 mg的木瓜葉片組織將以TANBead ®Plant DNA Auto Kit (Taiwan Advanced Nanotech Inc, Taiwan)處理而提取總基因組DNA (Total genomic DNA),而當測核酸樣本選用RNA時,單一木瓜種子或40 mg的木瓜葉片將以TANBead ®Plant RNA Auto Kit (Taiwan Advanced Nanotech Inc, Taiwan)處理而提取總RNA,以進行後續實驗。另外,前述之單一木瓜種子係提取種仁的DNA或RNA,以增加試驗的準確率。 The nucleic acid samples to be tested used in this test can be divided into DNA and RNA. When DNA is selected as the nucleic acid sample to be tested, a single papaya seed or 40 mg of papaya leaf tissue will be treated with TANBead ® Plant DNA Auto Kit (Taiwan Advanced Nanotech Inc, Taiwan) to extract total genomic DNA (Total genomic DNA), and when the test When RNA is selected as the nucleic acid sample, a single papaya seed or 40 mg of papaya leaves will be treated with TANBead ® Plant RNA Auto Kit (Taiwan Advanced Nanotech Inc, Taiwan) to extract total RNA for subsequent experiments. In addition, the aforementioned single papaya seed line extracts the DNA or RNA of the kernel to increase the accuracy of the test.

二、聚合酶連鎖反應The polymerase chain reaction

聚合酶連鎖反應是在生物體外複製特定DNA片段的核酸合成技術,是以待測核酸樣本須以DNA的形式呈現始可進行反應。因此,當本發明之待測核酸樣本選用RNA時,1 μg的木瓜樣本總RNA將以Transcriptor First Strand cDNA Synthesis Kit (Roche Life Science, Germany)處理,以從總RNA轉化而得第一鏈cDNA (1 ststrand cDNA)以進行後續反應。 Polymerase chain reaction is a nucleic acid synthesis technology that replicates specific DNA fragments outside the body. The nucleic acid sample to be tested must be in the form of DNA before it can react. Therefore, when RNA is selected as the nucleic acid sample to be tested in the present invention, 1 μg of papaya sample total RNA will be processed with Transcriptor First Strand cDNA Synthesis Kit (Roche Life Science, Germany) to obtain the first strand cDNA ( 1 st strand cDNA) for subsequent reactions.

在聚合酶連鎖反應方面,10 ng之從單一木瓜種子取得的總基因組DNA、50 ng之從木瓜葉片取得的總基因組DNA或2 ul之第一鏈cDNA將與1×PCR緩衝液、0.8單位的 ProTaq聚合酶 (Protech Technology Enterprise, Taiwan)、0.1 mM的dNTP及0.2 mM之本發明的第一引子組或第二引子組混合而形成總體積為20 μl的PCR反應物,並將其置入聚合酶連鎖反應儀中進行反應,且聚合酶連鎖反應以下述條件進行:在95°C下反應3分鐘,然後在95°C下反應30秒,接著在55°C或60°C之退火溫度下反應30秒,而後在72°C的條件下反應1分鐘;前述反應將進行35個循環,最後在72°C的條件下反應3分鐘而結束反應,以得第一引子組對應之第一反應產物或第二引子組對應之第二反應產物。 In polymerase chain reaction, 10 ng of total genomic DNA obtained from a single papaya seed, 50 ng of total genomic DNA obtained from papaya leaves, or 2 ul of first-strand cDNA will be mixed with 1×PCR buffer, 0.8 units of ProTaq polymerase (Protech Technology Enterprise, Taiwan), 0.1 mM of dNTP and 0.2 mM of the first primer set or the second primer set of the present invention were mixed to form a PCR reaction product with a total volume of 20 μl, and placed in the polymerase The reaction was carried out in an enzyme chain reaction apparatus, and the polymerase chain reaction was carried out under the following conditions: react at 95°C for 3 minutes, then react at 95°C for 30 seconds, and then at an annealing temperature of 55°C or 60°C React for 30 seconds, then react at 72°C for 1 minute; the aforementioned reaction will be carried out for 35 cycles, and finally react at 72°C for 3 minutes to end the reaction, so as to obtain the first reaction corresponding to the first primer group The product or the second reaction product corresponding to the second primer set.

接著,前述之第一反應產物或第二反應產物將分別以1.5%的瓊脂糖凝膠進行膠體電泳分離,以偵測第一反應產物是否具有第一擴增子產物,並偵測第二反應產物是否具有第二擴增子產物,其中第一擴增子產物對應Gs等位基因的聚合酶連鎖反應擴增產物,而第二擴增子產物則對應gs等位基因的聚合酶連鎖反應擴增產物。另外,本試驗另以木瓜蛋白酶基因片段作為內部控制組,以確保本試驗之精確性。Next, the aforementioned first reaction product or second reaction product will be separated by gel electrophoresis on 1.5% agarose gel to detect whether the first reaction product has the first amplicon product, and to detect the second reaction product Whether the product has a second amplicon product where the first amplicon product corresponds to the PCR amplification product of the Gs allele and the second amplicon product corresponds to the PCR amplification product of the gs allele increase product. In addition, this test also uses the papain gene fragment as an internal control group to ensure the accuracy of this test.

請參照第3圖與第4圖,第3圖係繪示本發明之鑑別全兩性木瓜的檢驗套組用以進行聚合酶連鎖反應之一膠體電泳分析圖,第4圖係繪示本發明之鑑別全兩性木瓜的檢驗套組用以進行聚合酶連鎖反應之另一膠體電泳分析圖。Please refer to Figure 3 and Figure 4, Figure 3 is a colloidal electrophoresis analysis diagram for polymerase chain reaction of the test kit for identifying all amphoteric papayas of the present invention, and Figure 4 is a diagram of the present invention Another gel electrophoresis profile of the polymerase chain reaction of the test kit for differentiating fully hermaphrodite papaya.

如第3圖所示,當以本發明之第一引子組對木瓜樣本的待測核酸樣本進行聚合酶連鎖反應後,雄性之佛羅里達種、雌性之日陞種、雌性之佛羅里達種與正常兩性之日陞種的第一反應產物均具有分子量等於403 bp之Gs等位基因的聚合酶連鎖反應擴增產物,顯示其MDAR4的基因編碼序列並無變異。然而,由於全兩性之木瓜種苗7號在MDAR4的基因編碼序列包含3個插入缺失SNP位點,是以其並無法與第一引子組結合並得到第一引子組的擴增子產物。As shown in Figure 3, when the first primer set of the present invention is used to carry out the polymerase chain reaction on the nucleic acid sample to be tested in the papaya sample, the male Florida species, the female Sunrise species, the female Florida species and normal hermaphrodites The first reaction products of Risheng species all had the polymerase chain reaction amplification product of the Gs allele with a molecular weight equal to 403 bp, showing that there was no variation in the MDAR4 gene coding sequence. However, since the fully hermaphroditic papaya seedling No. 7 contains three indel SNP sites in the MDAR4 gene coding sequence, it cannot combine with the first primer set and obtain the amplicon product of the first primer set.

再如第4圖所示,當以本發明之第二引子組對木瓜樣本的待測核酸樣本進行聚合酶連鎖反應後,全兩性之木瓜種苗7號的第二反應產物具有分子量等於282 bp之gs等位基因的聚合酶連鎖反應擴增產物,而雄性之佛羅里達種、雌性之日陞種、雌性之佛羅里達種與正常兩性之日陞種則無,顯示本發明之第二引子組確實可有效偵測本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記,並可有效區別木瓜樣本是否為全兩性木瓜植株。Again as shown in Figure 4, when the second primer set of the present invention is used to carry out the polymerase chain reaction on the nucleic acid sample to be tested in the papaya sample, the second reaction product of the all-hermaphrodite papaya seedling No. 7 has a molecular weight equal to 282 bp The polymerase chain reaction amplification product of the gs allele, but no male Florida species, female Sunrise species, female Florida species, and normal hermaphrodite Sunrise species, shows that the second primer set of the present invention is indeed effective Detecting the molecular markers of the present invention for identifying papaya seedling No. 7 and hermaphrodite papaya descendants thereof can effectively distinguish whether a papaya sample is a hermaphrodite papaya plant.

由上述結果可知,本發明之鑑別全兩性木瓜的檢驗套組以及鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法透過檢測木瓜樣本中是否具有本發明之用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記,可快速且準確地於木瓜品種選拔早期階段挑選具有較佳的經濟價值的木瓜種苗7號之全兩性木瓜植株,並可進一步應用於挑選木瓜種苗7號之後裔中的全兩性木瓜植株,進而降低選種及日後栽種的人力成本,並具有相關市場的應用潛力。From the above results, it can be seen that the test kit for identifying papaya seedlings of the present invention and the method for identifying papaya seedling No. 7 and its descendants are hermaphroditic papayas by detecting whether the papaya samples contain the papaya seedling No. 7 and its descendants of the present invention. Molecular markers of the hermaphrodite papaya descendants can quickly and accurately select the hermaphrodite papaya plants with better economic value in the early stage of papaya variety selection, and can be further applied to the selection of descendants of papaya seedling No. 7 All hermaphrodite papaya plants in the plant, thereby reducing the labor cost of seed selection and planting in the future, and has application potential in related markets.

雖然本發明已以實施方式揭露如上,然其並非用以限定本發明,任何熟習此技藝者,在不脫離本發明之精神和範圍內,當可作各種之更動與潤飾,因此本發明之保護範圍當視後附之申請專利範圍所界定者為準。Although the present invention has been disclosed above in terms of implementation, it is not intended to limit the present invention. Anyone skilled in this art can make various changes and modifications without departing from the spirit and scope of the present invention. Therefore, the protection of the present invention The scope shall be defined by the appended patent application scope.

100,200:鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法 110,120,130,140,150,210,220,230,240,250,260:步驟 100,200: The method for identifying papaya seedling No. 7 and its all-hermaphroditic papaya descendants 110,120,130,140,150,210,220,230,240,250,260: steps

第1圖係繪示本發明一實施方式之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法的步驟流程圖; 第2圖係繪示本發明另一實施方式之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法的步驟流程圖; 第3圖係繪示本發明之鑑別全兩性木瓜的檢驗套組用以進行聚合酶連鎖反應之一膠體電泳分析圖;以及 第4圖係繪示本發明之鑑別全兩性木瓜的檢驗套組用以進行聚合酶連鎖反應之另一膠體電泳分析圖。 Figure 1 is a flow chart showing the steps of a method for identifying papaya seedling No. 7 and its descendants' all-hermaphrodite papaya according to an embodiment of the present invention; Fig. 2 is a flow chart showing the steps of the method for identifying papaya seedling No. 7 and its descendants' fully hermaphrodite papaya according to another embodiment of the present invention; Fig. 3 is a gel electrophoresis analysis diagram for polymerase chain reaction of the test kit for distinguishing whole hermaphrodite papaya of the present invention; and Fig. 4 is another gel electrophoresis analysis diagram for the polymerase chain reaction of the test kit for differentiating fully hermaphrodite papaya according to the present invention.

100:鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法 100: The method for identifying papaya seedling No. 7 and its descendants of the hermaphrodite papaya

110,120,130,140,150:步驟 110,120,130,140,150: steps

Claims (9)

一種用於鑑別木瓜種苗7號及其後裔之全兩性木瓜的分子標記,包含如SEQ ID NO: 1所示之一核苷酸序列,其中如SEQ ID NO: 1所示之該核苷酸序列包含一單去氫抗壞血酸還原酶4 (monodehydroascorbate reductase 4, MDAR4)之單核苷酸多型性(single nucleotide polymorphism, SNP)基因座。A molecular marker for distinguishing papaya seedling No. 7 and its descendants of fully hermaphrodite papaya, comprising a nucleotide sequence shown in SEQ ID NO: 1, wherein the nucleotide sequence shown in SEQ ID NO: 1 Contains a single nucleotide polymorphism (SNP) locus of monodehydroascorbate reductase 4 (MDAR4). 一種鑑別全兩性木瓜的檢驗套組,其係用以鑑別木瓜種苗7號及其後裔之全兩性木瓜,包含: 一第一引子組,包含: 一如SEQ ID NO: 2所示之正向引子;及 一如SEQ ID NO: 3所示之反向引子;以及 一第二引子組,包含: 一如SEQ ID NO: 4所示之正向引子;及 一如SEQ ID NO: 5所示之反向引子; 其中,該鑑別全兩性木瓜的檢驗套組係用以檢測一木瓜樣本是否具有如SEQ ID NO: 1所示之核苷酸序列。 A test kit for identifying hermaphrodite papaya, which is used to identify hermaphrodite papaya seedling No. 7 and its descendants, comprising: A first primer set, including: A forward primer as shown in SEQ ID NO: 2; and A reverse primer as shown in SEQ ID NO: 3; and A second set of primers, including: A forward primer as shown in SEQ ID NO: 4; and A reverse primer as shown in SEQ ID NO: 5; Wherein, the test kit for identifying all hermaphrodite papaya is used to detect whether a papaya sample has the nucleotide sequence shown in SEQ ID NO: 1. 如請求項2所述之鑑別全兩性木瓜的檢驗套組,更包含: 一反轉錄聚合酶連鎖反應所需之試劑。 The test kit for identifying all hermaphrodite papaya as described in claim 2 further includes: A reagent required for reverse transcription polymerase chain reaction. 一種鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,包含: 提供一木瓜樣本的一待測核酸樣本; 提供一如請求項2所述之鑑別全兩性木瓜的檢驗套組; 進行一第一核酸增幅步驟,其係以該待測核酸樣本為模板並利用該第一引子組進行一聚合酶連鎖反應,以獲得一第一反應產物; 進行一第二核酸增幅步驟,其係以該待測核酸樣本為模板並利用該第二引子組進行一聚合酶連鎖反應,以獲得一第二反應產物;以及 進行一偵測步驟,其係偵測該第一反應產物是否具有一第一擴增子產物,並偵測該第二反應產物是否具有一第二擴增子產物; 其中,當該第一反應產物不具有該第一擴增子產物且該第二反應產物具有該第二擴增子產物時,該木瓜樣本將被判斷為一全兩性木瓜樣本。 A method for identifying papaya seedling No. 7 and its all-hermaphroditic papaya descendants, comprising: Provide a test nucleic acid sample of a papaya sample; Provide a test kit for identifying all-hermaphrodite papaya as described in claim 2; Carrying out a first nucleic acid amplification step, which is to use the nucleic acid sample to be tested as a template and use the first primer set to perform a polymerase chain reaction to obtain a first reaction product; Carrying out a second nucleic acid amplification step, which is to use the nucleic acid sample to be tested as a template and use the second primer set to perform a polymerase chain reaction to obtain a second reaction product; and performing a detection step of detecting whether the first reaction product has a first amplicon product and detecting whether the second reaction product has a second amplicon product; Wherein, when the first reaction product does not have the first amplicon product and the second reaction product has the second amplicon product, the papaya sample will be determined as a fully amphipathic papaya sample. 如請求項4所述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中該第一擴增子產物的分子量等於403 bp,該第二擴增子產物的分子量等於282 bp。The method for identifying papaya seedling No. 7 and its offspring's all-hermaphrodite papaya as described in claim 4, wherein the molecular weight of the first amplicon product is equal to 403 bp, and the molecular weight of the second amplicon product is equal to 282 bp. 如請求項4所述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中該待測核酸樣本為DNA或RNA。The method for identifying papaya seedling No. 7 and hermaphrodite papaya of its descendants as described in claim 4, wherein the nucleic acid sample to be tested is DNA or RNA. 如請求項6所述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中當該待測核酸樣本為RNA時,該鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法更包含: 進行一反轉錄步驟,其係對該待測核酸樣本進行一反轉錄反應。 The method for identifying papaya seedling No. 7 and its all-hermaphrodite papaya of its descendants as described in claim 6, wherein when the nucleic acid sample to be tested is RNA, the method for identifying papaya seedling No. 7 and its all-hermaphrodite papaya of its descendants further includes : A reverse transcription step is carried out, which is to perform a reverse transcription reaction on the nucleic acid sample to be tested. 如請求項4所述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中該偵測步驟係以膠體電泳系統進行。The method for identifying papaya seedling No. 7 and its offspring's all-hermaphrodite papaya as described in claim 4, wherein the detection step is performed by a gel electrophoresis system. 如請求項4所述之鑑別木瓜種苗7號及其後裔之全兩性木瓜的方法,其中該木瓜樣本為木瓜種子、木瓜葉片或木瓜花器。The method for identifying papaya seedling No. 7 and hermaphrodite papaya of its descendants as described in claim 4, wherein the papaya sample is papaya seeds, papaya leaves or papaya flowers.
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