TW201910348A - TIFA antagonists and their use for treating diseases - Google Patents

TIFA antagonists and their use for treating diseases Download PDF

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TW201910348A
TW201910348A TW106125168A TW106125168A TW201910348A TW 201910348 A TW201910348 A TW 201910348A TW 106125168 A TW106125168 A TW 106125168A TW 106125168 A TW106125168 A TW 106125168A TW 201910348 A TW201910348 A TW 201910348A
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peptide segment
cancer
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TWI734814B (en
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蔡明道
魏同佑
吳沛宇
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中央研究院
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Abstract

The present invention relates to use of TRAF-interacting protein with an FHA domain (TIFA) antagonists for treating diseases. Particularly, the present invention relates to an isolated peptide fragment from TIFA which acts as a dominant negative inhibitor of TIFA and is effective in treating cancer or an inflammatory disorder. The present invention also relates to a method for predicting cancer prognosis based on the TIFA expression level in a subject in need. The present invention further relates to a method for treating a disease via TIFA silencing.

Description

TIFA拮抗劑及其治療疾病之用途TIFA antagonists and their use in treating diseases

本發明係有關具有FHA結構域之TRAF交互作用蛋白(TIFA)拮抗劑用於治療疾病之用途。具體而言,本發明係有關來自TIFA之分離的胜肽片段,其作為TIFA的顯性負抑制劑且有效治療癌症或發炎性疾病。本發明亦有關基於有需求之個體的TIFA表現量預測癌症預後之方法。本發明進一步有關經由TIFA靜默以治療疾病之方法。The present invention relates to the use of a TRAF interacting protein (TIFA) antagonist having a FHA domain for the treatment of a disease. In particular, the present invention relates to isolated peptide fragments from TIFAs that act as dominant negative inhibitors of TIFAs and are effective in treating cancer or inflammatory diseases. The invention also relates to methods of predicting cancer prognosis based on TIFA performance of an individual in need thereof. The invention further relates to methods of treating diseases via TIFA silencing.

癌症是全球的死亡主因之一。化療與分子標靶治療抗性為目前癌症研究與治療面臨的主要問題。舉例而言,急性骨髓白血病(AML)為群簇性血液惡性腫瘤(clonal hematologic malignancy),其臨床特徵、發病機制、及治療結果具有極大變異性。此惡性疾病係由造血前驅細胞異常分化引起,使其喪失對增生調節因子的反應能力。AML病患的標準治療方法為初步以化療誘發,隨後進行緩解後治療,並配合額外化療週期或同種異體幹細胞移植以預防復發(1)。儘管取得重大進展,但目前AML治療僅提供有限的存活效益,而非提供完全令人滿意的反應,大概是由於化療抗藥性與疾病復發(1,2)。欲減少復發率及提高治療功效,迫切需要尋找新穎標靶(3,4)。Cancer is one of the leading causes of death worldwide. Chemotherapy and molecular target treatment resistance are the main problems facing current cancer research and treatment. For example, acute myeloid leukemia (AML) is a clonal hematologic malignancy with great variability in clinical features, pathogenesis, and treatment outcomes. This malignant disease is caused by abnormal differentiation of hematopoietic precursor cells, which causes them to lose their ability to respond to proliferative regulators. The standard treatment for patients with AML is initially induced by chemotherapy, followed by post-remission therapy, with additional chemotherapy cycles or allogeneic stem cell transplantation to prevent recurrence (1). Despite significant advances, current AML treatments offer only limited survival benefits, rather than providing a completely satisfactory response, presumably due to chemotherapy resistance and disease recurrence (1, 2). In order to reduce the recurrence rate and improve the efficacy of treatment, it is urgent to find novel targets (3, 4).

核因子-κB (NF-κB)控制各態樣之免疫反應,且優先調節細胞存活、增生、及分化(5)。最近的證據將越來越多的惡性腫瘤歸因於NF-κB異常活化,其與其他傳訊分子及途徑交叉作用(6),因此視為幾種癌症包括白血病預後不良的危險因子(7)。一致認為,持續活化性NF-κB可保護腫瘤細胞免於凋亡刺激,並促進其對化學療法與電離輻射的抗性(8),推測是通過轉錄活化抗凋亡/促生存因子Bcl-2與Bcl-XL (9)。據此觀點,NF-κB在白血病生成過程中的角色亦應用於AML (10),且NF-κB之抑制於此造血惡性腫瘤再次達到化學敏感性,這可能是由於促生存反應減弱及促凋亡信號活化所致(11)。彼等觀察集中指出NF-κB傳訊軸作為有希望的治療標靶(12)。Nuclear factor-κB (NF-κB) controls the immune response of various aspects and preferentially regulates cell survival, proliferation, and differentiation (5). Recent evidence has attributed an increasing number of malignancies to abnormal activation of NF-κB, which interacts with other signaling molecules and pathways (6) and is therefore considered a risk factor for poor prognosis in several cancers including leukemia (7). It is agreed that sustained activation of NF-κB protects tumor cells from apoptotic stimuli and promotes their resistance to chemotherapy and ionizing radiation (8), presumably through transcriptional activation of the anti-apoptotic/promoting factor Bcl-2. With Bcl-X L (9). According to this view, the role of NF-κB in the process of leukemia production is also applied to AML (10), and the inhibition of NF-κB in this hematopoietic malignant tumor again achieves chemical sensitivity, which may be due to the weakening of pro-survival response and promotion Due to activation of the death signal (11). These observations focused on the NF-κB signaling axis as a promising therapeutic target (12).

奧洛拉(Aurora)家族絲胺酸/蘇胺酸激酶於有絲分裂期間通過調節染色體排列、分離、及胞質分裂而促進腫瘤增生(13),並視為抗癌標靶(14)。已有報導,AML病患的骨髓(BM)單核細胞之奧洛拉A係向上調節(15),且顯示與不利的細胞遺傳學風險及較高白血球(WBC)計數相關聯(16)。此外,據顯示,奧洛拉A促進癌細胞於活體外與於活體內的化學抗性,其係通過活化NF-κB傳訊途徑減少化學療法誘發的細胞凋亡(17)。在支持下,報告了以奧洛拉A抑制劑VX680 進行治療(18),該藥物對慢性骨髓性白血病(CML)顯示臨床效用(19),提高Bax/Bcl-2之比率,其暗示促進細胞凋亡。The Aurora family of serine/threonine kinases promotes tumor proliferation during mitosis by regulating chromosome alignment, isolation, and cytokinesis (13) and is considered an anti-cancer target (14). It has been reported that the Aurora A line of bone marrow (BM) monocytes in AML patients is upregulated (15) and is shown to be associated with adverse cytogenetic risks and higher white blood cell (WBC) counts (16). Furthermore, it has been shown that Aurora A promotes chemical resistance of cancer cells in vitro and in vivo by reducing chemotherapy-induced apoptosis by activating the NF-κB signaling pathway (17). With support, treatment with the Alorora A inhibitor VX680 was reported (18), which shows clinical utility for chronic myelogenous leukemia (CML) (19), increasing the ratio of Bax/Bcl-2, suggesting that cells are promoted Apoptosis.

TIFA為TRAF-交互作用蛋白,其係NF-κB傳訊途徑之相對新穎的參與者。發明人先前研究發現,TIFA過度表現能以TNF-α-依賴性方式促進NF-κB活性,且TIFA靜默可減弱此TNF-α-刺激之NF-κB傳訊(20)。機制上而言,此信號軸起始於TIFA上蘇胺酸9 (pThr9)的TNF-α-依賴性磷酸化作用,其與TIFA的叉頭結合(forkhead-associated)(FHA)結構域交互作用,以促進TIFA二聚體的寡聚合作用(20,21)。TIFA寡聚合作用隨後支持TRAF家族組分的高序架構(high-ordered architecture),該家族如TNF受體相關聯因子2 (TRAF2)或TRAF6,以及調控TRAF6的泛蛋白化(ubiquitination),以活化IκB激酶(IκK)複合體,藉此,IκB隨後磷酸化,且經歷泛蛋白化依賴性裂解,容許NF-κB的核轉位(nuclear translocation)以轉活化下游因子(22)。除了TNF-α刺激以外,據顯示,此種TIFA磷酸化作用依賴性寡聚合作用亦利用革蘭氏陰性菌衍生之單醣庚糖-1,7-雙磷酸酯(HBP)驅動,以活化先天免疫(23),且該TIFA介導先天免疫反應,其係於內皮剪切應力(endothelial sheer stress)時經由組裝NLRP3發炎體(inflammasome)為之(24),顯示TIFA在調控先天免疫反應與發炎反應的重要角色。TIFA is a TRAF-interacting protein that is a relatively novel participant in the NF-κB signaling pathway. Previous studies by the inventors have found that TIFA overexpression promotes NF-κB activity in a TNF-α-dependent manner, and TIFA silencing attenuates this TNF-α-stimulated NF-κB signaling (20). Mechanistically, this signal axis initiates TNF-α-dependent phosphorylation of threonine 9 (pThr9) on TIFA, which interacts with the forkhead-associated (FHA) domain of TIFA To promote oligomerization of TIFA dimers (20, 21). TIFA oligopolymerization then supports a high-ordered architecture of the TRAF family of components, such as TNF receptor-associated factor 2 (TRAF2) or TRAF6, and modulates the ubiquitination of TRAF6 to activate The IκB kinase (IκK) complex whereby IκB is subsequently phosphorylated and undergoes ubiquitin-dependent cleavage, allowing nuclear translocation of NF-κB to transactivate downstream factors (22). In addition to TNF-α stimulation, it has been shown that such TIFA phosphorylation-dependent oligopolymerization is also driven by Gram-negative bacteria-derived monosaccharide heptose-1,7-bisphosphate (HBP) to activate innate Immunization (23), and this TIFA mediates the innate immune response, which is based on the assembly of NLRP3 inflammasome at the endogenous sheer stress (24), indicating that TIFA regulates innate immune responses and inflammation. The important role of the reaction.

FHA結構域由約80-120個胺基酸組成,且習知可特異性辨識磷酸化蘇胺酸(pThr)以發揮傳訊功能。在不同的含FHA蛋白中的序列同源性相當低,然而,FHA結構域的整體結構性架構則相當保留,其中二個b股型b褶板形成β三明治結構。b股藉由環(loops)相連接,儘管長度差異很大,卻職司辨識特異性pThr配體。FHA-pThr結合作用習知可調節多樣生物功能,範圍由DNA損傷修復、細胞週期檢查點,乃至訊息傳遞。FHA結構域的特異性、生物功能、結構、及機制摘錄於近來的回顧文獻中(25)。The FHA domain consists of about 80-120 amino acids, and it is known to specifically recognize phosphorylated threonine (pThr) to function as a signaling. The sequence homology in the different FHA-containing proteins is quite low, however, the overall structural architecture of the FHA domain is quite retained, with two b-strand b-sheaths forming a beta sandwich structure. The b-strands are connected by loops, and although the length varies widely, the function recognizes the specific pThr ligand. The FHA-pThr binding function can regulate a variety of biological functions ranging from DNA damage repair, cell cycle checkpoints, and even message transmission. The specificity, biological function, structure, and mechanism of the FHA domain are extracted from recent review literature (25).

在本發明中,意外發現,於此提供之TIFA胜肽片段可作為TIFA顯性負抑制劑,以阻斷或減弱細胞介素刺激性NF-κB活化作用。具體而言,TIFA胜肽片段含有二聚合核心區段,其連接N端的Thr9區段或C端的TRAF6/TRAF 2交互作用區段,可有效治療癌症或發炎性疾病,其係經由靶向TIFA而阻斷或減弱細胞介素刺激性NF-κB活化作用。特定而言,發現到,TIFA胜肽片段之表現,可拮抗發炎性細胞介素分泌所刺激之癌細胞生長及增進化學毒性/降低化學抗性,達到促進的治療功效。本發明亦提供一種經由TIFA靜默的疾病/病況之治療,以及一種基於有需求之個體的TIFA表現量以預測癌症預後之方法。In the present invention, it has been unexpectedly discovered that the TIFA peptide fragments provided herein can act as a dominant negative inhibitor of TIFA to block or attenuate the activation of interleukin-stimulated NF-κB. In particular, the TIFA peptide fragment contains a dimeric core segment that links the N-terminal Thr9 segment or the C-terminal TRAF6/TRAF 2 interaction segment to effectively treat cancer or inflammatory diseases via targeting TIFAs. Block or attenuate the activation of interleukin-stimulated NF-κB. In particular, it was found that the expression of TIFA peptide fragments can antagonize the growth of cancer cells stimulated by inflammatory mediator secretion and enhance chemical toxicity/reduction of chemical resistance to achieve therapeutic effects. The invention also provides a treatment of a disease/condition that is silenced via TIFA, and a method of predicting the prognosis of a cancer based on the amount of TIFA expression in an individual in need thereof.

因此,在一方面,本發明提供TIFA抑制劑,其係一分離之TIFA胜肽片段,包含二聚合核心胜肽區段,其N端結合Thr9胜肽區段或C端結合TRAF6/TRAF2交互作用胜肽區段,其中 (i) Thr9胜肽區段包含一N端磷酸化作用/寡聚合作用模體MX1 X2 FEDX3 DTX4 EX5 X6 T,其序列如SEQ ID NO: 13所示,其中X1 為絲胺酸(S)或蘇胺酸(T)、X2 為絲胺酸(S)、蘇胺酸(T)、天門冬醯胺酸(N)、X3 為丙胺酸(A)或纈胺酸(V)、X4 為麩胺酸(E)或麩胺醯胺酸(Q)、X5 為蘇胺酸(T)或甲硫胺酸(M),且X6 為纈胺酸(V)或白胺酸(L); (ii) 二聚合核心胜肽區段包含六個b鏈,其包括 (a) 一b3鏈,其具有b3模體VKFG; (b) 一b4鏈,其具有b4模體YX1 F,其中X1 為蘇胺酸(T)或異白胺酸(I); (c) 一b5鏈,其具有b5模體QFX1 LX2 X3 F,其中X1 為絲胺酸(S)、纈胺酸(V)、或丙胺酸(A)、X2 為麩胺醯胺酸(Q)或組胺酸(H),且X3 為白胺酸(L)、脯胺酸(P)、或纈胺酸(V); (d) 一b6鏈,其具有b6模體SFEIKN; (e) 一b7鏈,其具有b7模體LIV;以及 (f) 一b8鏈,其具有b8模體X1 X2 L,其中X1 為精胺酸(R)、麩胺醯胺酸(Q)、或離胺酸(K),且X2 為麩胺酸(E)或蘇胺酸(T); 其中b3至b8鏈之每一者係利用複數個內部環序列從N端至C端依序連接至下一者;以及 (iii) TRAF6/TRAF2交互作用胜肽區段包含四個b鏈,其包括 (a) 一b9鏈,其具有b9模體LX1 KX2 D,其中X1 為天門冬醯胺酸(N)或組胺酸(H),且X2 為甲硫胺酸(M)、白胺酸(L)、纈胺酸(V)、或異白胺酸(I); (b) 一b10鏈,其具有b10模體X1 CX2 X3 RF,其中X1 為精胺酸(R)或離胺酸(K)、X2 為甲硫胺酸(M)或白胺酸(L),且X3 為纈胺酸(V)、白胺酸(L)、或異白胺酸(I); (c) 一b11鏈,其具有b11模體YQX1 LX2 X3 X4 E ,其中X1 為苯丙胺酸(F)或異白胺酸(I)、X2 為甲硫胺酸(M)、白胺酸(L)、纈胺酸(V)、或異白胺酸(I)、X3 為麩胺酸(E)或麩胺醯胺酸(Q),且X4 為離胺酸(K)或精胺酸(R);以及 (d) 一b12鏈,其具有b12模體X1 FX2 X3 X4 FX5 X6 ,其中X1 為苯丙胺酸(F)或絲胺酸(S)、X2 為麩胺酸(E)或麩胺醯胺酸(Q)、X3 為蘇胺酸(T)或異白胺酸(I)、X4 為麩胺醯胺酸(Q)、組胺酸(H)、或麩胺酸(E)、X5 為異白胺酸(I)、纈胺酸(V)、絲胺酸(S)、或苯丙胺酸(F),且X7 為白胺酸(L)、甲硫胺酸(M)、或苯丙胺酸(F); 其中b9至b12鏈之每一者係利用複數個內部環序列從N端至C端依序連接至下一者;以及 一C端環序列,連接至b12鏈C端; 其中分離之TIFA胜肽片段不含Thr9胜肽區段與TRAF6/TRAF2交互作用胜肽區段兩者。Thus, in one aspect, the invention provides a TIFA inhibitor comprising an isolated TIFA peptide fragment comprising a dimeric core peptide segment, the N-terminus binding to a Thr9 peptide segment or the C-terminus binding to a TRAF6/TRAF2 interaction a peptide segment, wherein (i) the Thr9 peptide segment comprises an N-terminal phosphorylation/oligopolymerization motif MX 1 X 2 FEDX 3 DTX 4 EX 5 X 6 T, the sequence of which is set forth in SEQ ID NO: 13 Where X 1 is serine (S) or threonine (T), X 2 is serine (S), threonine (T), aspartic acid (N), X 3 is propylamine Acid (A) or proline (V), X 4 is glutamic acid (E) or glutamine proline (Q), X 5 is threonine (T) or methionine (M), and X 6 is valine (V) or leucine (L); (ii) the dimerized core peptide segment comprises six b chains comprising (a) a b3 chain having the b3 motif VKFG; b) a b4 chain having a b4 motif YX 1 F, wherein X 1 is threonine (T) or isoleucine (I); (c) a b5 chain having a b5 motif QFX 1 LX 2 X 3 F, wherein X 1 is serine (S), valine (V), or alanine (A), X 2 is glutamine proline (Q) or histidine (H), and X 3 is leucine (L), proline (P), or guanamine Acid (V); (d) a b6 chain having a b6 motif SFEIKN; (e) a b7 chain having a b7 motif LIV; and (f) a b8 chain having a b8 motif X 1 X 2 L, wherein X 1 is arginine (R), glutamine proline (Q), or lysine (K), and X 2 is glutamic acid (E) or threonine (T); wherein b3 Each of the b8 strands is sequentially linked from the N-terminus to the C-terminus to the next using a plurality of internal loop sequences; and (iii) the TRAF6/TRAF2 interaction peptide segment comprises four b-chains, including a) a b9 chain having the b9 motif LX 1 KX 2 D, wherein X 1 is aspartic acid (N) or histidine (H), and X 2 is methionine (M), white Amine acid (L), valine acid (V), or isoleucine (I); (b) a b10 chain having b10 motif X 1 CX 2 X 3 RF, wherein X 1 is arginine ( R) or from the amine acid (K), X 2 is methionine (M) or leucine (L), and X 3 is valine (V), leucine (L), or isoleamine Acid (I); (c) a b11 chain having b11 motif YQX 1 LX 2 X 3 X 4 E wherein X 1 is phenylalanine (F) or isoleucine (I), and X 2 is methyl sulfide leucine (M), leucine (L), valine (V), or isoleucine (I), X 3 is glutamic acid (E) or bran Acid amide (Q), and X 4 is lysine (K) or arginine (R &lt); and (d) a chain b12, b12 die body having X 1 FX 2 X 3 X 4 FX 5 X 6 Wherein X 1 is phenylalanine (F) or serine (S), X 2 is glutamic acid (E) or glutamine proline (Q), X 3 is threonine (T) or isoleamine The acid (I), X 4 is glutamine proline (Q), histidine (H), or glutamic acid (E), and X 5 is isoleucine (I), valine (V), Serine (S), or phenylalanine (F), and X 7 is leucine (L), methionine (M), or phenylalanine (F); wherein each of the b9 to b12 chains A plurality of internal loop sequences are sequentially linked from the N-terminus to the C-terminus to the next; and a C-terminal loop sequence is ligated to the B-terminus of the b12 chain; wherein the isolated TIFA peptide fragment does not contain the Thr9 peptide segment and the TRAF6 /TRAF2 interacts with both peptide segments.

在一具體實施例中,N端Thr9-磷酸化作用模體係位於相對應於SEQ ID NO: 1的位置1-14。In a specific embodiment, the N-terminal Thr9-phosphorylation motif system is located at positions 1-14 corresponding to SEQ ID NO: 1.

在一具體實施例中,b3模體係位於相對應於SEQ ID NO: 1的位置47-50。In a specific embodiment, the b3 modular system is located at position 47-50 corresponding to SEQ ID NO: 1.

在一具體實施例中,b4模體係位於相對應於SEQ ID NO: 1的位置58-60。In a specific embodiment, the b4 modular system is located at positions 58-60 corresponding to SEQ ID NO: 1.

在一具體實施例中,b5模體係位於相對應於SEQ ID NO: 1的位置69-75。In a specific embodiment, the b5 modular system is located at positions 69-75 corresponding to SEQ ID NO: 1.

在一具體實施例中,b6模體係位於相對應於SEQ ID NO: 1的位置84-89。In a specific embodiment, the b6 modular system is located at positions 84-89 corresponding to SEQ ID NO: 1.

在一具體實施例中,b7模體係位於相對應於SEQ ID NO: 1的位置96-98。In a specific embodiment, the b7 modular system is located at positions 96-98 corresponding to SEQ ID NO: 1.

在一具體實施例中,b8模體係位於相對應於SEQ ID NO: 1的位置101-103。In a specific embodiment, the b8 modular system is located at positions 101-103 corresponding to SEQ ID NO: 1.

在一具體實施例中,b9模體係位於相對應於SEQ ID NO: 1的位置106-110。In a specific embodiment, the b9 modular system is located at positions 106-110 corresponding to SEQ ID NO: 1.

在一具體實施例中,b10模體係位於相對應於SEQ ID NO: 1的位置114-119。In a specific embodiment, the b10 modular system is located at positions 114-119 corresponding to SEQ ID NO: 1.

在一具體實施例中,b11模體係位於相對應於SEQ ID NO: 1的位置122-129。In a specific embodiment, the b11 modular system is located at positions 122-129 corresponding to SEQ ID NO: 1.

在一具體實施例中,b12模體係位於相對應於SEQ ID NO: 1的位置136-143。In a specific embodiment, the b12 modular system is located at positions 136-143 corresponding to SEQ ID NO: 1.

在一些具體實施例中,Thr9胜肽區段更包含二個b鏈,其包括 (a) 一b1鏈,其具有b1模體X1 LX2 X3 T X4 Y,其中X1 為半胱胺酸(C)或絲胺酸(S)、X2 為麩胺醯胺酸(Q)或組胺酸(H)、X3 為甲硫胺酸(M)、異白胺酸(I)、白胺酸(L)或纈胺酸(V),且X4 為纈胺酸(V)、異白胺酸(I)或白胺酸(L);以及 (b) 一b2鏈,其具有b2模體位於位置X1 X2 X3 P,其中X1 為麩胺酸(E)或天門冬胺酸(D)、X2 為離胺酸(K)或蘇胺酸(T),且X3 為白胺酸(L)或苯丙胺酸(F), 其中b1鏈係利用一內部環序列從N端至C端依序連接至b2鏈。In some embodiments, the Thr9 peptide segment further comprises two b-chains comprising (a) a b1 chain having a b1 motif X 1 LX 2 X 3 TX 4 Y, wherein X 1 is a cysteamine Acid (C) or serine (S), X 2 is glutamine proline (Q) or histidine (H), X 3 is methionine (M), isoleucine (I), Leucine (L) or valine (V), and X 4 is valine (V), isoleucine (I) or leucine (L); and (b) a b2 chain having The b2 motif is located at position X 1 X 2 X 3 P, wherein X 1 is glutamic acid (E) or aspartic acid (D), and X 2 is lysine (K) or threonine (T), and X 3 is leucine (L) or phenylalanine (F), wherein the b1 chain is sequentially linked from the N-terminus to the C-terminus to the b2 chain using an internal loop sequence.

在一具體實施例中,b1模體係位於相對應於SEQ ID NO: 1的位置15-21。In a specific embodiment, the b1 modular system is located at position 15-21 corresponding to SEQ ID NO: 1.

在一具體實施例中,b2模體係位於相對應於SEQ ID NO: 1的位置39-42。In a specific embodiment, the b2 modular system is located at positions 39-42 corresponding to SEQ ID NO: 1.

在一些具體實施例中,TRAF6/TRAF2交互作用胜肽區段之C端環序列係位於相對應於SEQ ID NO: 1的位置144-184。In some embodiments, the C-terminal loop sequence of the TRAF6/TRAF2 interaction peptide segment is at position 144-184 corresponding to SEQ ID NO: 1.

在一些具體實施例中,Thr9胜肽區段包含一胺基酸序列,係相對應於SEQ ID NO: 1之位置1-45,或一胺基酸序列,係具備與該序列至少70%相同度。在一些實例中,Thr9胜肽區段包含選自於由SEQ ID NOs: 23-34組成之群組的一胺基酸序列。In some embodiments, the Thr9 peptide segment comprises an amino acid sequence corresponding to positions 1-45 of SEQ ID NO: 1, or an amino acid sequence, which is at least 70% identical to the sequence degree. In some examples, the Thr9 peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 23-34.

在一些具體實施例中,二聚合核心胜肽區段包含一胺基酸序列,係相對應於SEQ ID NO: 1之位置46-103,或一胺基酸序列,係具備與該序列至少70%相同度。在一些實例中,二聚合核心胜肽區段包含選自於由SEQ ID NOs: 35-46組成之群組的一胺基酸序列。In some embodiments, the dimeric core peptide segment comprises an amino acid sequence corresponding to positions 46-103 of SEQ ID NO: 1, or an amino acid sequence having at least 70 % is equal. In some examples, the dimeric core peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 35-46.

在一些具體實施例中,TRAF6/TRAF2交互作用胜肽區段包含一胺基酸序列,係相對應於SEQ ID NO: 1之位置104-184,或一胺基酸序列,係具備與該序列至少70%相同度。在一些實例中,TRAF6/TRAF2交互作用胜肽區段包含選自於由SEQ ID NOs: 47-58組成之群組的一胺基酸序列。In some embodiments, the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence corresponding to position 104-184 of SEQ ID NO: 1, or an amino acid sequence, and is associated with the sequence At least 70% identical. In some examples, the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 47-58.

在一些具體實施例中,TRAF6/TRAF2交互作用胜肽區段之C端環序列包含一胺基酸序列,係相對應於SEQ ID NO: 1之位置144-184,或一胺基酸序列,係具備與該序列至少70%相同度。在一些實例中,TRAF6/TRAF2交互作用胜肽區段之C端環序列包含選自於由SEQ ID NOs: 59-70組成之群組的一胺基酸序列。In some embodiments, the C-terminal loop sequence of the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence corresponding to position 144-184 of SEQ ID NO: 1, or an amino acid sequence, It is at least 70% identical to the sequence. In some examples, the C-terminal loop sequence of the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 59-70.

在一具體實施例中,本發明之TIFA胜肽片段為F1-F2胜肽片段,包含Thr9胜肽區段與二聚合核心胜肽區段,其中Thr9胜肽區段C端係聯結至二聚合核心胜肽區段N端,且缺少TRAF 6交互作用胜肽區段。在一些實例中,F1-F2胜肽片段包含選自於由SEQ ID NOs: 71-82組成之群組的一胺基酸序列。In a specific embodiment, the TIFA peptide fragment of the present invention is an F1-F2 peptide fragment comprising a Thr9 peptide segment and a dimeric core peptide segment, wherein the Thr9 peptide segment C-terminus is linked to a dimerization The core peptide segment is N-terminal and lacks the TRAF 6 interaction peptide segment. In some examples, the F1-F2 peptide fragment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 71-82.

在一具體實施例中,本發明之TIFA胜肽片段為F2-F3胜肽片段,包含二聚合核心胜肽區段與TRAF 6交互作用胜肽區段,其中二聚合核心胜肽區段C端係聯結至TRAF 6交互作用胜肽區段N端,且缺少Thr9胜肽區段。在一些實例中,F2-F3胜肽片段包含選自於由SEQ ID NOs: 83-94組成之群組的一胺基酸序列。In a specific embodiment, the TIFA peptide fragment of the present invention is an F2-F3 peptide fragment comprising a dimerized core peptide segment and a TRAF 6 interaction peptide segment, wherein the second polymer core peptide segment C-terminal The line is linked to the N-terminus of the TRAF 6 interaction peptide segment and lacks the Thr9 peptide segment. In some examples, the F2-F3 peptide fragment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 83-94.

在另一方面,本發明提供一重組型核酸,其包含一核苷酸序列,係編碼本文所述胜肽之任一者。此一核酸可為一載體(vector),包含本文所述之編碼序列。在一些實例中,載體為病毒載體。In another aspect, the invention provides a recombinant nucleic acid comprising a nucleotide sequence encoding any of the peptides described herein. Such a nucleic acid can be a vector comprising the coding sequences described herein. In some examples, the vector is a viral vector.

可調配胜肽或核酸之任一者,以形成組合物,例如,醫藥組合物,其進一步包含生理上可接受載體(carrier)。Any of the peptides or nucleic acids can be tuned to form a composition, for example, a pharmaceutical composition, which further comprises a physiologically acceptable carrier.

本文亦提供一種用於治療TIFA活化相關聯之疾病或病況的方法,包含投予個體一有效量之胜肽之任一者或編碼如本文所述核酸之任一者,或包含彼等之組合物。TIFA活化相關聯之疾病或病況可為TIFA活化相關聯之癌症或發炎性疾病,或者癌症或發炎性疾病相關聯之細胞介素刺激性NF-κB活化作用。在一些具體實施例中,個體患有癌症,且胜肽片段、編碼核酸、及含有胜肽或編碼核酸之組合物係結合抗癌治療投予。具體而言,所投予胜肽片段、編碼核酸、及組合物之量係有效增進抗癌治療之細胞毒性。在一些具體實施例中,抗癌治療涉及投予抗癌劑或放射線照射。抗癌劑包括但不侷限於,化學治療劑及分子標靶藥物。抗癌劑之實例為依托泊苷(etoposide)、伊達比星(idarubicin)、阿糖胞苷(cytarabine)、索拉非尼(sorafenib)、瑞格菲尼(regorafenib)、博萊黴素(bleomycin)、硼替佐米(bortezomib)、硫酸布他卡因(busulfan)、及甲磺酸酯(obatoclax)。Also provided herein is a method for treating a disease or condition associated with TIFA activation comprising administering to an individual an agent of an effective amount of a peptide or encoding any of the nucleic acids as described herein, or a combination thereof Things. The disease or condition associated with TIFA activation can be a cancer or inflammatory disease associated with TIFA activation, or an interleukin-stimulated NF-κB activation associated with cancer or an inflammatory disease. In some embodiments, the individual has cancer and the peptide fragment, the encoding nucleic acid, and the composition comprising the peptide or encoding nucleic acid are administered in combination with an anti-cancer therapy. Specifically, the amount of the peptide fragment, the encoding nucleic acid, and the composition administered is effective to enhance the cytotoxicity of the anticancer treatment. In some embodiments, the anti-cancer treatment involves administration of an anti-cancer agent or radiation exposure. Anticancer agents include, but are not limited to, chemotherapeutic agents and molecular targeted drugs. Examples of anticancer agents are etoposide, idarubicin, cytarabine, sorafenib, regorafenib, bleomycin. ), bortezomib, bubuan sulfate, and metosulfam.

本發明亦發現,TIFA蛋白表現量與白血病之預後相關。具體而言,本發明提供一種預測白血病預後之方法,包含從白血病病患收集血液樣本、以FHA結構域(TIFA)測定血液樣本中TRAF-交互作用蛋白表現量、及根據血液樣本中TIFA表現量決定病患之白血病預後,其中血液樣本中TIFA量升高代表預後不良。The present inventors have also discovered that TIFA protein expression is associated with prognosis of leukemia. In particular, the present invention provides a method for predicting the prognosis of leukemia comprising collecting a blood sample from a leukemia patient, measuring the amount of TRAF-interacting protein in the blood sample by the FHA domain (TIFA), and determining the amount of TIFA in the blood sample. Determine the prognosis of leukemia in patients, in which the increase in TIFA in blood samples represents a poor prognosis.

進一步提供一種用於抑制個體細胞介素刺激性NF-κB活化作用之方法,包含投予個體一有效量之TIFA拮抗劑。TIFA拮抗劑之實例包括靶向TIFA之干擾核酸或TIFA顯性負抑制劑,如本文所述之TIFA胜肽片段。在一些實例中,欲治療之個體可為具備細胞介素刺激性NF-κB活化作用相關聯之疾病或病況的人類病患。此類疾病或病況可為由於細胞介素刺激性NF-κB活化作用之癌症或發炎性疾病。Further provided is a method for inhibiting the activation of interleukin-stimulated NF-κB in a subject comprising administering to the individual an effective amount of a TIFA antagonist. Examples of TIFA antagonists include interfering nucleic acids that target TIFAs or TIFA dominant negative inhibitors, such as the TIFA peptide fragments described herein. In some instances, the individual to be treated can be a human patient with a disease or condition associated with interleukin-stimulated NF-κB activation. Such diseases or conditions may be cancers or inflammatory diseases due to interleukin-stimulated NF-κB activation.

特定而言,本發明欲治療之癌症係相關於慢性發炎或發炎性疾病。本發明欲治療癌症之具體實例包括但不侷限於,血液癌症(如白血病或淋巴瘤)、肝癌、胃腸癌症(如胃癌或直腸癌)、肺癌、前列腺癌、胰腺癌、卵巢癌、及乳腺癌。在一些具體實施例中,本文所述之TIFA拮抗劑可結合抗癌劑投予,其相較於抗癌劑單獨治療或結合抗發炎劑治療,如依那西普(entanercept)、抗存活標靶藥物,如ABT-263、及NF-kB抗體藥劑,如硼替佐米(bortezomib),提供治療癌症時的協同效應。In particular, the cancers to be treated according to the invention are associated with chronic inflammatory or inflammatory diseases. Specific examples of the present invention for treating cancer include, but are not limited to, hematological cancers (such as leukemia or lymphoma), liver cancer, gastrointestinal cancer (such as gastric cancer or rectal cancer), lung cancer, prostate cancer, pancreatic cancer, ovarian cancer, and breast cancer. . In some embodiments, the TIFA antagonists described herein can be administered in combination with an anticancer agent that is treated alone or in combination with an anti-inflammatory agent, such as enanercept (antanercept), anti-survival agent, as compared to an anticancer agent. Target drugs, such as ABT-263, and NF-kB antibody agents, such as bortezomib, provide a synergistic effect in the treatment of cancer.

在一些具體實施例中,發炎性疾病為肝炎、動脈粥樣硬化、肺動脈高壓、心肌病、類風濕性關節炎、發炎性腸病、及法布里病(Fabry disease)。In some embodiments, the inflammatory disease is hepatitis, atherosclerosis, pulmonary hypertension, cardiomyopathy, rheumatoid arthritis, inflammatory bowel disease, and Fabry disease.

於本發明範疇內亦揭示一種用於治療細胞介素刺激性NF-κB活化作用相關疾病之醫藥組合物,該組合物包含本文所述胜肽或其編碼核酸之任一者,以及醫藥可接受載體。本發明進一步描述本文所述胜肽或其編碼核酸之用途,以製造藥劑用於本文所述之方法,如治療細胞介素刺激性NF-κB活化作用相關之疾病。Also disclosed within the scope of the invention is a pharmaceutical composition for treating a disorder associated with the activation of interleukin-stimulated NF-κB, comprising any of the peptides described herein or a nucleic acid encoding the same, and pharmaceutically acceptable Carrier. The invention further describes the use of a peptide or a nucleic acid encoding the same as described herein to produce an agent for use in a method described herein, such as a disease associated with the activation of interleukin-stimulated NF-κB.

下列描述闡明本發明之一或多個具體實施例細節。本發明之其他特徵或優點將因以下幾個具體實施例之詳細描述及所附申請專利範圍而顯見。The following description sets forth the details of one or more embodiments of the invention. Other features and advantages of the present invention will be apparent from the following detailed description of the appended claims.

除非另有定義,本文使用的所有技術及科學術語具有與本領域技術人員通常理解的相同含義。Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by those skilled in the art.

本文中使用的單數形式「一」、「一者」、及「該」包括複數參考物,除非本文另有明確規定。因此,例如,提及「一組件」應包括本領域技術人員習知的複數個此類部件及其等同物。The singular forms "a", "the", and "the" Thus, for example, reference to "a component" shall include a plurality of such components and their equivalents as are known to those skilled in the art.

「包含」或「包含有」等詞通常用於包括/涵蓋意指允許存在一或多個特徵、成分、或組分的意義。「包含」或「包含有」等詞涵蓋「組成」或「由~組成」等詞。The words "comprising" or "comprising" are used to include or encompass the meaning of the meaning of one or more features, components, or components. Words such as "including" or "including" include the words "composition" or "consisting of".

本文中使用的「多胜肽」乙詞意指由胜肽鍵連接的胺基酸殘基組成的聚合物。「胜肽」乙詞意指由連接的胺基酸所組成較短的多胜肽,例如,200個胺基酸以下、175個胺基酸以下、150個胺基酸以下,如140個以下、130個以下、120個以下、110個以下、100個以下、90個以下、80個以下、70個以下、60個以下、50個以下、或40個以下的胺基酸長度。As used herein, "polypeptide" refers to a polymer composed of amino acid residues linked by a peptide bond. The word "peptide" means a short multi-peptide consisting of a linked amino acid, for example, 200 amino acids or less, 175 amino acids or less, and 150 amino acids or less, such as 140 or less. 130 or less, 120 or less, 110 or less, 100 or less, 90 or less, 80 or less, 70 or less, 60 or less, 50 or less, or 40 or less amino acid lengths.

本文中使用的「約」或「近似」等詞意指本領域普通技術人員理解的可接受偏差程度,其可在一定程度上根據文中的使用而變化。一般而言,「約」或「近似」可指引用值附近±10%範圍的數值。The words "about" or "approximately" as used herein mean the degree of acceptable deviation understood by one of ordinary skill in the art, which may vary to some extent depending on the use herein. In general, "about" or "approximate" may refer to values in the range of ±10% near the value used.

本文中使用的「相對應於」意指殘基在蛋白質或胜肽中的列舉位置,或殘基類似、同源、或等同於蛋白質或胜肽中的列舉位置。As used herein, "corresponding to" means the position of a residue in a protein or peptide, or a similar, homologous, or equivalent position in a protein or peptide.

本文中使用的「實質上相同」乙詞意指二序列具有超過70%、較佳為75%、更佳為80%、甚而更佳為85%、又甚而更佳為90%、及最佳為95%或100%同源性。As used herein, the term "substantially identical" means that the second sequence has more than 70%, preferably 75%, more preferably 80%, even more preferably 85%, even more preferably 90%, and preferably It is 95% or 100% homologous.

1. TIFATIFA 蛋白protein

本文中使用的「TRAF-交互作用叉頭結合蛋白質A(FHA)」、「具有FHA結構域之TRAF-交互作用蛋白」、「TIFA」、「TIFA蛋白」、及「TIFA多胜肽」等詞可互換使用。本文所述的TIFA蛋白可包括如SQE ID NO: 1 (人類TIFA)所示之胺基酸序列,且亦可包括彼等所含胺基酸序列(i)實質上等同於構成本文所述之任何TIFA蛋白的胺基酸序列;以及(ii)由一核酸序列所編碼,該核酸序列能在至少中度嚴格條件下雜交至編碼本文所示之任何TIFA蛋白的任何核酸序列,或能在至少中度嚴格條件下雜交至編碼本文所示之任何TIFA蛋白的任何核酸序列,但使用同義密碼子(如密碼子不具有相同核苷酸序列但編碼相同胺基酸)。本文所述之TIFA蛋白包括人類TIFA及其源自脊椎動物的同源物(homologues),且具體而言彼等源自哺乳類動物的同源物。特定而言,本文所述之TIFA蛋白包括源自人類的TIFA胺基酸序列(SEQ ID NO: 1),源自其他哺乳類動物的TIFA胺基酸序列(SEQ ID NOs: 2至12),其具有至少70%、至少75%、或至少80%的SEQ ID NO: 1相同度(參見圖7)。本文所述之TIFA蛋白進一步包括由編碼TIFA之天然多核苷酸序列的cDNA拷貝子編碼之任何以重組方式(基因工程)衍生的TIFA多胜肽。As used herein, "TRAF-interacting fork-binding protein A (FHA)", "TRAF-interacting protein with FHA domain", "TIFA", "TIFA protein", and "TIFA multi-peptide" are used. Can be used interchangeably. The TIFA proteins described herein may include amino acid sequences as shown in SQE ID NO: 1 (human TIFA), and may also include amino acid sequences (i) that are substantially identical to those described herein. An amino acid sequence of any TIFA protein; and (ii) encoded by a nucleic acid sequence capable of hybridizing to at least moderately stringent conditions to any nucleic acid sequence encoding any TIFA protein shown herein, or capable of at least Any nucleic acid sequence encoding any TIFA protein shown herein is hybridized under moderate stringency conditions, but using a synonymous codon (eg, the codon does not have the same nucleotide sequence but encodes the same amino acid). The TIFA proteins described herein include human TIFAs and their homologues derived from vertebrates, and in particular, homologs derived from mammals. In particular, the TIFA proteins described herein include a human-derived TIFA amino acid sequence (SEQ ID NO: 1) derived from other mammalian TIFA amino acid sequences (SEQ ID NOs: 2 to 12), Having at least 70%, at least 75%, or at least 80% SEQ ID NO: 1 identity (see Figure 7). The TIFA proteins described herein further comprise any recombinantly (genetically engineered) TIFA multipeptide encoded by a cDNA copy encoding a native polynucleotide sequence of TIFA.

在結構上,於此揭示本文所用的TIFA蛋白,由N端至C端,包括(i)一F1結構域,亦即一Thr9胜肽區段,包含N端磷酸化作用/寡聚合作用模體,及視需要的b1-b2鏈;(ii)一F2結構域,亦即一二聚合核心胜肽區段,包含六個b鏈,其包括b3-b8鏈;以及(iii)一F3結構域,亦即一TRAF6/TRAF2交互作用胜肽片段,包含四個b鏈,其包括b9-b12鏈及一C端環序列。表1描述F1、F2、及F3結構域及其結構上特徵。 Structurally, the TIFA protein used herein, from N-terminus to C-terminus, includes (i) an F1 domain, ie, a Thr9 peptide segment, comprising an N-terminal phosphorylation/oligomerization motif And optionally a b1-b2 chain; (ii) an F2 domain, that is, a di-polymeric core peptide segment comprising six b-strands comprising a b3-b8 chain; and (iii) an F3 domain That is, a TRAF6/TRAF2 interaction peptide fragment comprising four b-strands including a b9-b12 chain and a C-terminal loop sequence. Table 1 describes the F1, F2, and F3 domains and their structural features.

b鏈之每一者可利用環序列以N端至C端順序連接至下一者,該環序列長度上可以有變化且具有相對低程度的序列同源性。特定而言,前述TIFA蛋白模體之每一者大致位於以下位置:N端Thr9-磷酸化作用模體係位於相對應於SEQ ID NO: 1位置1-14之處;b1模體係位於相對應於SEQ ID NO: 1位置15-21之處;b2模體係位於相對應於SEQ ID NO: 1位置39-42之處;b3模體係位於相對應於SEQ ID NO: 1位置47-50之處;b4模體係位於相對應於SEQ ID NO: 1位置58-60之處;b5模體係位於相對應於SEQ ID NO: 1位置69-75之處;b6模體係位於相對應於SEQ ID NO: 1位置84-89之處;b7模體係位於相對應於SEQ ID NO: 1位置96-98之處;b8模體係位於相對應於SEQ ID NO: 1位置101-103之處;b9模體係位於相對應於SEQ ID NO: 1位置106-110之處;b10模體係位於相對應於SEQ ID NO: 1位置114-119之處;b11模體係位於相對應於SEQ ID NO: 1位置122-129之處;以及/或者b12模體係位於相對應於SEQ ID NO: 1位置136-143之處。在一些具體實施例中,TRAF6/TRAF2交互作用胜肽區段之C端環序列係位於相對應於SEQ ID NO: 1位置144-184之處。此外,F1、F2、及F3結構域之每一者可大致位於以下位置:F1結構域相對應於SEQ ID NO: 1位置1-45;F2結構域相對應於SEQ ID NO: 1位置46-103;以及/或者F3結構域相對應於SEQ ID NO: 1位置104-184。Each of the b strands can be ligated to the next in sequence from the N-terminus to the C-terminus, which can vary in length and have a relatively low degree of sequence homology. Specifically, each of the aforementioned TIFA protein motifs is located substantially at the position where the N-terminal Thr9-phosphorylation motif system is located at positions 1-14 corresponding to SEQ ID NO: 1; the b1 motif system is located corresponding to SEQ ID NO: 1 position 15-21; b2 modular system is located corresponding to position 39-42 of SEQ ID NO: 1; b3 modular system is located corresponding to position 47-50 of SEQ ID NO: 1; The b4 motif system is located corresponding to positions 58-60 of SEQ ID NO: 1; the b5 motif system is located at position 69-75 corresponding to SEQ ID NO: 1; the b6 motif system is located corresponding to SEQ ID NO: 1 Positions 84-89; b7 mode system is located at position 96-98 corresponding to SEQ ID NO: 1; b8 mode system is located at position 101-103 corresponding to SEQ ID NO: 1; b9 mode system is located at phase Corresponding to position 106-110 of SEQ ID NO: 1; b10 is located at position 114-119 corresponding to SEQ ID NO: 1; b11 is located at position 122-129 corresponding to SEQ ID NO: 1. And/or the b12 modular system is located at a position corresponding to positions 136-143 of SEQ ID NO: 1. In some embodiments, the C-terminal loop sequence of the TRAF6/TRAF2 interaction peptide segment is located corresponding to positions 144-184 of SEQ ID NO: 1. Furthermore, each of the F1, F2, and F3 domains can be located substantially at the position: the F1 domain corresponds to position 1-45 of SEQ ID NO: 1; the F2 domain corresponds to position 46 of SEQ ID NO: 1 103; and/or the F3 domain corresponds to positions 104-184 of SEQ ID NO: 1.

功能上,TIFA蛋白可在細胞介素、細菌衍生糖(23,26)、或發炎條件(24)(如TNF-α)刺激後經磷酸化作用活化,從而驅動TIFA寡聚合作用,其致使與TRAF6或TRAF2交互作用,包括NF-κB活化作用。特定而言,於此揭示,二聚合核心區段(F2結構域)可在二個TIFA單體之間形成內在二聚體。此外,Thr9胜肽區段(F1結構域)可利用激酶(如奧洛拉A激酶)在N端磷酸化作用/寡聚合作用模體(SEQ ID NO: 13)的Thr9殘基處進行磷酸化,且一旦發生磷酸化作用,F1結構域N端磷酸化作用/寡聚合作用模體的磷酸化Thr9殘基可由位於F2結構域的pThr-辨識模體(如位於SEQ ID NO: 1約位置51-89,參見圖7-8)辨識,因此驅動TIFA之寡聚合作用(例如,一TIFA二聚體,係經由F1結構域N端磷酸化作用/寡聚合作用模體與F2結構域pThr辨識模體間之分子間交互作用,而結合額外的一或多個TIFA二聚體)。由至少二個以上的TIFA二聚體形成的TIFA寡聚體,可隨後與腫瘤壞死因子受體相關因子6 (TRAF6)或TRAF2相互作用,其係經由TIFA寡聚體各個TIFA單體之TRAF6/TRAF2交互作用胜肽片段(F3結構域)進行,從而促進TRAF2/TRAF6寡聚合作用。可由本領域習知方法測定F1、F2、及F3結構域每一者之功能特徵。舉例而言,可利用體外激酶試驗(20)分析Thr9磷酸化作用,TIFA單體經由F2結構域之二聚體作用可利用非變性PAGE (native PAGE)測定(20,23,24),以及TIFA寡聚體經由F3結構域與TRAF6或TRAF2之交互作用可利用免疫沈澱法確認。Functionally, TIFA proteins can be activated by phosphorylation after stimulation with interleukins, bacterial-derived sugars (23, 26), or inflammatory conditions (24) (eg, TNF-α), thereby driving TIFA oligomerization, which results in TRAF6 or TRAF2 interactions, including NF-κB activation. In particular, it is disclosed herein that a dimeric core segment (F2 domain) can form an intrinsic dimer between two TIFA monomers. In addition, the Thr9 peptide segment (F1 domain) can be phosphorylated at the Thr9 residue of the N-terminal phosphorylation/oligomerization motif (SEQ ID NO: 13) using a kinase such as aolola A kinase. And, once phosphorylation occurs, the phosphorylated Thr9 residue of the N-terminal phosphorylation/oligopolymerization motif of the F1 domain may be derived from the pThr-recognition motif located in the F2 domain (eg, at position 51 of SEQ ID NO: 1 -89, see Figure 7-8) Identification, thus driving the oligomerization of TIFAs (eg, a TIFA dimer via the F1 domain N-terminal phosphorylation/oligopolymerization motif and F2 domain pThr recognition motif) Intermolecular interactions between the bodies, combined with additional one or more TIFA dimers). TIFA oligomers formed from at least two TIFA dimers can subsequently interact with tumor necrosis factor receptor-associated factor 6 (TRAF6) or TRAF2 via TRAF6/ of each TIFA monomer of TIFA oligomers The TRAF2 interaction peptide fragment (F3 domain) is carried out to promote TRAF2/TRAF6 oligomerization. The functional characteristics of each of the F1, F2, and F3 domains can be determined by methods known in the art. For example, Thr9 phosphorylation can be assayed using the in vitro kinase assay (20), which can be determined by non-denaturing PAGE (native PAGE) (20, 23, 24) and TIFA via the dimerization of the F2 domain. The interaction of oligomers with TRAF6 or TRAF2 via the F3 domain can be confirmed by immunoprecipitation.

在一些具體實施例中,Thr9胜肽區段(F1結構域)包含一胺基酸序列,係相對應於SEQ ID NO: 1位置1-45 (亦即,SEQ ID NO: 23),或一胺基酸序列,係具備與該序列至少70%、80%、或90%相同度。在一些實例中,Thr9胜肽區段包含選自於由SEQ ID NOs: 23-34組成之群組的一胺基酸序列。In some embodiments, the Thr9 peptide segment (F1 domain) comprises an amino acid sequence corresponding to positions 1-45 of SEQ ID NO: 1 (ie, SEQ ID NO: 23), or The amino acid sequence is at least 70%, 80%, or 90% identical to the sequence. In some examples, the Thr9 peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 23-34.

在一些具體實施例中,聚合核心胜肽區段包含一胺基酸序列相對應於SEQ ID NO: 1位置46-103 (亦即,SEQ ID NO: 35),或一胺基酸序列具備與該序列至少70%、80%、或90%相同度。在一些實例中,二聚合核心胜肽區段包含選自於由SEQ ID NOs: 35-46組成之群組的一胺基酸序列。In some embodiments, the polymeric core peptide segment comprises an amino acid sequence corresponding to positions 46-103 of SEQ ID NO: 1 (ie, SEQ ID NO: 35), or an amino acid sequence possesses The sequence is at least 70%, 80%, or 90% identical. In some examples, the dimeric core peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 35-46.

在一些具體實施例中,TRAF6/TRAF2交互作用胜肽區段包含一胺基酸序列相對應於SEQ ID NO: 1位置104-184 (亦即,SEQ ID NO: 47),或一胺基酸序列具備與該序列至少70%、80%、或90%相同度。在一些實例中,TRAF6/TRAF2交互作用胜肽區段包含選自於由SEQ ID NOs: 47-58組成之群組的一胺基酸序列。In some embodiments, the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence corresponding to positions 104-184 of SEQ ID NO: 1 (ie, SEQ ID NO: 47), or an amino acid. The sequence is at least 70%, 80%, or 90% identical to the sequence. In some examples, the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 47-58.

在一些具體實施例中,TRAF6/TRAF2交互作用胜肽區段的C端環序列包含一胺基酸序列,係相對應於SEQ ID NO: 1位置144-184,或一胺基酸序列,係具備與該序列至少70%相同度。在一些實例中,TRAF6/TRAF2交互作用胜肽區段的C端環序列包含選自於由SEQ ID NOs: 59-70組成之群組的一胺基酸序列。In some embodiments, the C-terminal loop sequence of the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence corresponding to position 144-184 of SEQ ID NO: 1, or an amino acid sequence, It is at least 70% identical to the sequence. In some examples, the C-terminal loop sequence of the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 59-70.

2. TIFA2. TIFA 胜肽片段及含有其之組合物Peptide fragment and composition containing the same

TIFA胜肽片段(或可互換稱為TIFA片段)係指衍生自TIFA之非天然存在的截斷片段,或其功能變體。此類胜肽不同於天然存在之全長TIFA蛋白,至少係因此類胜肽片段可作為全長活化型TIFA蛋白的顯性負胜肽,其與活化型TIFA蛋白競爭,從而減少活化型TIFA蛋白的作用。具體而言,TIFA胜肽片段對細胞介素誘發之NF-κB活化作用呈現抑制效用。因此,TIFA胜肽片段可視為用於抑制TIFA介導之傳訊途徑的TIFA拮抗劑,從而有利於治療與TIFA異常活化相關聯的疾病與病症。A TIFA peptide fragment (or interchangeably termed a TIFA fragment) refers to a non-naturally occurring truncated fragment derived from TIFA, or a functional variant thereof. Such a peptide differs from a naturally occurring full-length TIFA protein, at least such that the peptide fragment can serve as a dominant negative peptide of the full-length activated TIFA protein, which competes with the activated TIFA protein, thereby reducing the effect of the activated TIFA protein. . Specifically, TIFA peptide fragments have an inhibitory effect on interleukin-induced NF-κB activation. Thus, TIFA peptide fragments can be considered as TIFA antagonists for inhibiting TIFA-mediated signaling pathways, thereby facilitating the treatment of diseases and conditions associated with abnormal activation of TIFAs.

依據本發明,TIFA胜肽片段作為全長活化型TIFA蛋白之顯性負胜肽,必須包括二聚合核心胜肽區段(F2結構域),其可在N端連接Thr9胜肽區段(F1結構域),或在C端連接TRAF6/TRAF2交互作用胜肽區段(F3結構域)。在一具體實施例中,本發明TIFA胜肽片段包括Thr9胜肽區段(F1結構域)與二聚合核心胜肽區段(F2結構域),其中Thr9胜肽區段的C端聯結至二聚合核心胜肽區段的N端,且缺少TRAF6/TRAF2交互作用胜肽區段(F3結構域)。在一些實例中,本發明TIFA胜肽片段選自於由SEQ ID NOs: 71-82組成之群組。According to the present invention, the TIFA peptide fragment as a dominant negative peptide of the full-length activated TIFA protein must include a dimerized core peptide segment (F2 domain) which can be linked to the Thr9 peptide segment at the N-terminus (F1 structure) Domain), or the TRAF6/TRAF2 interaction peptide segment (F3 domain) is ligated at the C-terminus. In a specific embodiment, the TIFA peptide fragment of the invention comprises a Thr9 peptide segment (F1 domain) and a dimeric core peptide segment (F2 domain), wherein the C-terminus of the Thr9 peptide segment is linked to two The N-terminus of the core peptide segment is polymerized and the TRAF6/TRAF2 interaction peptide segment (F3 domain) is absent. In some examples, a TIFA peptide fragment of the invention is selected from the group consisting of SEQ ID NOs: 71-82.

在另一具體實施例中,本發明TIFA胜肽片段包括二聚合核心胜肽區段(F2結構域)與TRAF6/TRAF2交互作用胜肽區段(F3結構域),其中二聚合核心胜肽區段的C端聯結至TRAF6/TRAF2交互作用胜肽區段的N端,其缺少Thr9胜肽區段(F1結構域)。在一些實例中,本發明TIFA胜肽片段係選自於由SEQ ID NO: 83-94組成之群組。In another specific embodiment, the TIFA peptide fragment of the invention comprises a dimeric core peptide segment (F2 domain) and a TRAF6/TRAF2 interaction peptide segment (F3 domain), wherein the dimeric core peptide region The C-terminus of the segment is ligated to the N-terminus of the TRAF6/TRAF2 interaction peptide segment, which lacks the Thr9 peptide segment (F1 domain). In some examples, a TIFA peptide fragment of the invention is selected from the group consisting of SEQ ID NOs: 83-94.

在額外具體實施例中,本文所述TIFA片段可為TIFA片段之變體,其具一或多個突變。可理解的是,多胜肽可具有限數量的改變或修飾,其可在多胜肽特定部分內進行且無關其活性或功能,並仍產生具有可接受程度之等同或類似之生物活性或功能的變體。具體而言,本發明TIFA片段呈現的活性,係降低TIFA活化作用及隨後的NF-κB活化作用。因此,可辨別本發明TIFA片段的活性所必需或非必需胺基酸位置,該活性係減少TIFA活化作用/NF-κB活化作用。欲進行TIFA活化作用分析,可利用例如體外激酶試驗、非變性PAGE、免疫沉澱法、或螢光素酶報導基因試驗。利用發炎性細胞介素或病理壓力刺激細胞會致使NF-κB活化作用,其可利用例如NF-κB報導基因系統經由螢光素酶量測定。若TIFA活化作用/NF-κB活化作用程度在過度表現一測試TIFA片段時下降,其係相較於未過度表現測試TIFA片段而言,則該測試TIFA片段可視為有效降低TIFA活化作用/NF-κB活化作用。在一些實例中,胺基酸殘基突變為保留性胺基酸取代,意指胺基酸殘基化學結構與另一胺基酸殘基類似,且對於多胜肽功能、活性、或其他生物作用等性質的影響較小或實質上無影響。可以本領域普通技術人員習知之改變多胜肽序列的方法製備變體,例如採用此類方法的參考文獻,如Molecular Cloning: A Laboratory Manual, J. Sambrook, et al., eds., Second Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1989。舉例而言,胺基酸的保留性取代包括以下各群組中進行的胺基酸取代:(i) A、G;(ii) S、T;(iii) Q、N;(iv) E、D;(v) M、I、L、V;(vi) F、Y、W;以及(vii) K、R、H。In additional specific embodiments, the TIFA fragments described herein can be variants of TIFA fragments that have one or more mutations. It will be appreciated that the multi-peptide may have a limited number of alterations or modifications which may be made within a particular portion of the peptide and are not related to its activity or function, and still produce an equivalent or similar biological activity or function to an acceptable degree. Variant. In particular, the activity exhibited by the TIFA fragments of the invention reduces TIFA activation and subsequent NF-κB activation. Thus, the amino acid position necessary or non-essential for the activity of the TIFA fragment of the invention can be discerned, which reduces TIFA activation/NF-κB activation. For TIFA activation assays, for example, in vitro kinase assays, non-denaturing PAGE, immunoprecipitation, or luciferase reporter gene assays can be utilized. Stimulation of cells with inflammatory mediators or pathological stress results in activation of NF-κB, which can be determined via luciferase assay using, for example, the NF-κB reporter gene system. If the degree of TIFA activation/NF-κB activation declines when overexpressing a test TIFA fragment, the test TIFA fragment can be considered to be effective in reducing TIFA activation/NF- compared to the non-overexpression test TIFA fragment. κB activation. In some instances, the amino acid residue is mutated to a retentive amino acid substitution, meaning that the amino acid residue chemical structure is similar to another amino acid residue, and for multi-peptide function, activity, or other organism Effects such as effects have little or no effect. Variants can be prepared by methods known to those of ordinary skill in the art for altering multi-peptide sequences, such as references using such methods, such as Molecular Cloning: A Laboratory Manual, J. Sambrook, et al., eds., Second Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1989. For example, a retaining substitution of an amino acid includes an amino acid substitution performed in the following groups: (i) A, G; (ii) S, T; (iii) Q, N; (iv) E, D; (v) M, I, L, V; (vi) F, Y, W; and (vii) K, R, H.

本發明TIFA片段可利用化學合成產生,其係使用蛋白質化學之習知技術,例如固相合成或在均勻溶液中合成。The TIFA fragments of the present invention can be produced by chemical synthesis using conventional techniques of protein chemistry, such as solid phase synthesis or synthesis in homogeneous solutions.

或者,本發明TIFA片段可以重組技術製備。在這方面,提供包含有編碼本發明TIFA片段的核苷酸序列的重組型核酸及包含有此重組型核酸的宿主細胞。宿主細胞可在合適條件下培養,以表現感興趣的多胜肽。多胜肽的表現可為組成形式,使得其不斷產生或可誘發,其需要刺激以啟動表現。在可誘發表現的情況下,當需要時可,例如,在培養基中加入誘發物質,例如,異丙基β-D-1-硫代半乳糖苷(IPTG)或甲醇,以啟動蛋白質產生。多胜肽可利用本領域習知之多個技術,例如,層析法,如FPLC或親和性管柱,從宿主細胞中回收與純化。Alternatively, the TIFA fragments of the invention can be prepared by recombinant techniques. In this aspect, a recombinant nucleic acid comprising a nucleotide sequence encoding a TIFA fragment of the invention and a host cell comprising the recombinant nucleic acid are provided. Host cells can be cultured under suitable conditions to express the multi-peptide of interest. The performance of the multi-peptide may be in the form of a composition such that it is continuously produced or inducible, which requires stimulation to initiate performance. In the case where the performance can be induced, an inducing substance such as isopropyl β-D-1-thiogalactoside (IPTG) or methanol can be added to the medium, for example, to initiate protein production. Polypeptides can be recovered and purified from host cells using a variety of techniques well known in the art, such as chromatography, such as FPLC or affinity columns.

「多核苷酸」或「核酸」等詞可指由核苷酸單元組成的聚合物。多核苷酸包括天然存在的核酸,如去氧核糖核酸(「DNA」)與核糖核酸 (「RNA」),以及核酸類似物,包括彼等具有非天然存在的核苷酸者。多核苷酸之合成可利用,例如,自動化DNA合成儀。「核酸」乙詞典型上意指大型多核苷酸。應理解到,當核苷酸序列以DNA序列(亦即,A、T、G、C)表示時,其亦包括RNA序列(亦即,A、U、G、C),其中「U」代替「T」。「cDNA」乙詞意指一DNA互補或等同於一mRNA,不論單鏈或雙鏈形式。The terms "polynucleotide" or "nucleic acid" may refer to a polymer composed of nucleotide units. Polynucleotides include naturally occurring nucleic acids such as deoxyribonucleic acid ("DNA") and ribonucleic acid ("RNA"), as well as nucleic acid analogs, including those having non-naturally occurring nucleotides. The synthesis of polynucleotides can be utilized, for example, as an automated DNA synthesizer. The "nucleic acid" B dictionary type means a large polynucleotide. It should be understood that when a nucleotide sequence is represented by a DNA sequence (ie, A, T, G, C), it also includes an RNA sequence (ie, A, U, G, C), wherein "U" is substituted. "T". The word "cDNA" means that a DNA is complementary or identical to an mRNA, whether in single or double stranded form.

「互補」乙詞意指二多核苷酸的拓撲相容性或作用表面相匹配。因此,二個分子可描述為互補,此外,接觸面特徵彼此互補。若第一多核苷酸的核苷酸序列與第二多核苷酸之多核苷酸結合配偶體的核苷酸序列相同,則第一多核苷酸與第二多核苷酸互補。因此,序列為5′-TATAC-3′之多核苷酸互補於序列為5′-GTATA-3′之多核苷酸。The term "complementary" means that the topological compatibility or surface interaction of the dinucleotide is matched. Thus, two molecules can be described as complementary, and in addition, the contact surface features are complementary to each other. If the nucleotide sequence of the first polynucleotide is identical to the nucleotide sequence of the polynucleotide binding partner of the second polynucleotide, the first polynucleotide is complementary to the second polynucleotide. Thus, a polynucleotide of sequence 5'-TATAC-3' is complementary to a polynucleotide of sequence 5'-GTATA-3'.

「編碼」乙詞意指多核苷酸(例如,基因、cDNA、或mRNA)中特定核苷酸序列之固有性質,其可作為模板,以合成生物過程的其他聚合物與巨分子,係具經定義的核苷酸序列(亦即,rRNA、tRNA、及mRNA)或經定義的胺基酸序列及由此產生之生物性質。因此,若一基因產生的mRNA轉錄與轉譯在細胞或其他生物系統中產生蛋白質,則稱該基因編碼蛋白質。本領域技術人員可理解到,由於遺傳密碼的簡併(degeneracy),許多不同多核苷酸與核酸可編碼相同多胜肽。亦應理解到,技術人員可使用常規技術,進行不影響由所述多核苷酸編碼之多胜肽序列的核苷酸取代,以反映任何欲表現多胜肽之特定宿主生物體的密碼子使用(codon usage)。因此,除非另有說明,「編碼胺基酸序列之核苷酸序列」包括彼此為簡併形式且編碼相同胺基酸序列的所有核苷酸序列。編碼蛋白質與RNA的核苷酸序列可包括內含子(intron)。The word "encoding" means the intrinsic property of a particular nucleotide sequence in a polynucleotide (eg, a gene, cDNA, or mRNA) that can be used as a template to synthesize other polymers and macromolecules of a biological process. A defined nucleotide sequence (i.e., rRNA, tRNA, and mRNA) or a defined amino acid sequence and the resulting biological properties. Thus, if a gene produces mRNA transcription and translation to produce a protein in a cell or other biological system, the gene is said to encode a protein. Those skilled in the art will appreciate that many different polynucleotides and nucleic acids can encode the same multi-peptide due to the degeneracy of the genetic code. It will also be appreciated that the skilled artisan can employ conventional techniques for nucleotide substitutions that do not affect the multi-peptide sequence encoded by the polynucleotide to reflect the codon usage of any particular host organism in which the peptide is to be expressed. (codon usage). Thus, unless otherwise indicated, "nucleotide sequence encoding an amino acid sequence" includes all nucleotide sequences that are degenerate in form and encode the same amino acid sequence. Nucleotide sequences encoding proteins and RNA can include introns.

「重組型核酸」乙詞意指具有非天然連接在一起之序列的多核苷酸或核酸。重組型核酸可以載體(vector)形式存在。「載體」可含有給定之感興趣核苷酸序列與調節序列。載體可用於表現給定之核苷酸序列(表現載體)或維持給定之核苷酸序列用於複製、操控、或使其在不同位置之間(例如,不同生物體之間)轉移。為了上述目的,可將載體導入適當宿主細胞。「重組型細胞」意指宿主細胞導入重組型核酸。「轉形作用」意指併入新DNA後之細胞遺傳變化(亦即,細胞外源性DNA)。「轉染」意指細胞以外源性DNA轉移的過程。「轉導」可特別意指外源性DNA經由病毒載體導入細胞的過程。「轉形細胞」意指利用重組DNA技術,導入編碼一感興趣蛋白質之DNA分子的細胞。By "recombinant nucleic acid" is meant a polynucleotide or nucleic acid having sequences that are not naturally joined together. The recombinant nucleic acid can exist in the form of a vector. A "vector" can contain a given nucleotide sequence of interest and regulatory sequences. Vectors can be used to represent a given nucleotide sequence (expression vector) or to maintain a given nucleotide sequence for replication, manipulation, or transfer between different positions (eg, between different organisms). For the above purposes, the vector can be introduced into a suitable host cell. "Recombinant cell" means the introduction of a recombinant nucleic acid into a host cell. "Transformation" means a cytogenetic change (i.e., extracellular DNA) after incorporation of new DNA. "Transfection" means the process of exogenous DNA transfer from cells. "Transduction" particularly means the process by which exogenous DNA is introduced into a cell via a viral vector. "Transformed cells" means cells that are introduced into a DNA molecule encoding a protein of interest using recombinant DNA techniques.

載體可為各類型,包括質體、黏質體、F型黏質體(fosmids)、游離基因體(episomes)、人造染色體、噬菌體、病毒載體等。典型上,在載體中,給定之核苷酸序列係可操作地鍵接至調節序列,使得當將載體導入宿主細胞時,給定之核苷酸序列可於調節序列控制下表現於宿主細胞。調控序列可包含,例如但不侷限於,啟動子序列(例如,巨細胞病毒(CMV)啟動子、猿猴病毒40 (SV40)早期啟動子、T7啟動子、及酒精氧化酶基因(AOX1)啟動子)、起始密碼子、複製起點、增強子、操縱子序列、分泌信號序列(例如,α-交配因子信號)、及其他控制序列(例如,夏因-達爾加諾(Shine-Dalgarno)序列與終止序列)。較佳地,載體可進一步含有用於隨後篩選程序的標記序列(例如,抗生素抗性標記序列)。欲生產蛋白質,在載體中,給定的感興趣核苷酸序列可連接至上述調節序列以外之另一核苷酸序列,使得產生融合多胜肽且有利於隨後的純化程序。該融合多胜肽包括用於純化之標籤,其可結合至多胜肽末端,且較佳地尺寸小,其不影響多胜肽所需活性。特定而言,標籤為約30個胺基酸殘基以下,具體而言約20個胺基酸殘基以下,更具體而言約10個胺基酸殘基以下的長度;或者具有分子量約10 kDa以下,具體而言約5 kDa以下,更具體而言約2.5 kDa以下。此標籤之實例包括但不侷限於,六(6)至十四(14)個His-標籤或一(1)至二(2)個Myc-標籤。標籤可連接至多胜肽N端或C端。在一些具體實施例中,標籤係體外或體內可切割。體外或體內切割可以蛋白酶進行。The vector may be of various types including plastids, vesicles, F-type fosmids, episomes, artificial chromosomes, phage, viral vectors and the like. Typically, in a vector, a given nucleotide sequence is operably linked to a regulatory sequence such that when the vector is introduced into a host cell, the given nucleotide sequence can be expressed in the host cell under the control of regulatory sequences. Regulatory sequences may include, for example, without limitation, promoter sequences (eg, cytomegalovirus (CMV) promoter, simian virus 40 (SV40) early promoter, T7 promoter, and alcohol oxidase gene (AOX1) promoter ), initiation codon, origin of replication, enhancer, operator sequence, secretion signal sequence (eg, alpha-mating factor signal), and other control sequences (eg, Shiine-Dalgarno sequence and Termination sequence). Preferably, the vector may further comprise a marker sequence (eg, an antibiotic resistance marker sequence) for subsequent screening procedures. To produce a protein, in a vector, a given nucleotide sequence of interest can be ligated to another nucleotide sequence other than the above regulatory sequences, such that a fusion polypeptide is produced and facilitates subsequent purification procedures. The fused multi-peptide comprises a tag for purification which binds to the end of the multi-peptide and is preferably small in size which does not affect the desired activity of the multi-peptide. In particular, the tag is below about 30 amino acid residues, specifically about 20 amino acid residues, more specifically about 10 amino acid residues or less; or has a molecular weight of about 10 Below kDa, specifically below about 5 kDa, more specifically below about 2.5 kDa. Examples of such tags include, but are not limited to, six (6) to fourteen (14) His-tags or one (1) to two (2) Myc-tags. The tag can be linked to the N- or C-terminus of the peptide. In some embodiments, the tag is cleavable in vitro or in vivo. In vitro or in vivo cleavage can be carried out by proteases.

在一些具體實施例中,若本發明胜肽實質上不含涉及胜肽製備過程之細胞材料或化學前驅物或其他化學物質,則可稱作「分離的」或「純化的」。應理解到,「分離的」或「純化的」等詞不一定反映胜肽經「絕對地」分離或純化的程度,如藉由除去所有其他物質(例如,雜質或細胞組分)。在一些情況下,例如,分離或純化之胜肽包括一含有胜肽之製備物,其具有小於50%、40%、30%、20%、或10% (重量)之其他蛋白(如細胞蛋白)、具有小於50%、40%、30%、20%、或10% (體積)之培養基、或具有小於50%、40%、30%、20%、或10% (重量)之化學前驅物或其他參與合成程序之化學物質。「分離的」或「純化的」等詞亦可應用於本發明之核酸。In some embodiments, the peptide of the present invention may be referred to as "isolated" or "purified" if it is substantially free of cellular material or chemical precursors or other chemicals involved in the peptide preparation process. It should be understood that the terms "isolated" or "purified" do not necessarily reflect the extent to which the peptide is "absolutely" isolated or purified, such as by removal of all other materials (eg, impurities or cellular components). In some cases, for example, the isolated or purified peptide comprises a peptide-containing preparation having less than 50%, 40%, 30%, 20%, or 10% by weight of other proteins (eg, cellular proteins) a medium having less than 50%, 40%, 30%, 20%, or 10% by volume, or having less than 50%, 40%, 30%, 20%, or 10% by weight of a chemical precursor Or other chemicals involved in the synthesis process. The terms "isolated" or "purified" are also applicable to the nucleic acids of the invention.

依據本發明,一有效量之活性成分(TIFA片段)可以生理上可接受載體(carrier)配製成適當形式的組合物,用於遞送與吸收。本發明組合物具體而言包含約0.1重量%至約100重量%之活性成分,其中重量百分比係基於整個組合物的重量計算。在一些具體實施例中,本發明組合物可為用於治療之醫藥組合物或藥劑。In accordance with the present invention, an effective amount of the active ingredient (TIFA fragment) can be formulated in a physiologically acceptable carrier in a suitable form for delivery and absorption. The compositions of the present invention specifically comprise from about 0.1% to about 100% by weight of active ingredient, wherein the weight percentages are based on the weight of the entire composition. In some embodiments, the compositions of the invention may be pharmaceutical compositions or medicaments for use in therapy.

本文中使用的「生理上可接受」意指載體相容於組合物之活性成分,且較佳地可穩定該活性成分,且對接受個體而言是安全的。該載體可為活性成分之稀釋劑、載具、賦形劑、或基質。適用賦形劑之一些實例包括乳糖、蔗糖、葡萄糖、山梨糖、甘露糖、澱粉、阿拉伯膠、磷酸鈣、藻酸鹽、黃蓍膠、明膠、矽酸鈣、微晶纖維素、聚乙烯吡咯烷酮、纖維素、無菌水、糖漿、及甲基纖維素。組合物可額外包含潤滑劑,如滑石、硬脂酸鎂、及礦物油;潤濕劑;乳化劑與懸浮劑;防腐劑,如羥基苯甲酸甲酯與丙酯;甜味劑;以及調味劑。本發明組合物可在投予病患後提供活性成分快速、持續、或延遲釋放的效果。As used herein, "physiologically acceptable" means that the carrier is compatible with the active ingredient of the composition, and preferably stabilizes the active ingredient, and is safe for the recipient. The carrier can be a diluent, carrier, excipient, or matrix of the active ingredient. Some examples of suitable excipients include lactose, sucrose, glucose, sorbose, mannose, starch, gum arabic, calcium phosphate, alginate, tragacanth, gelatin, calcium citrate, microcrystalline cellulose, polyvinylpyrrolidone. , cellulose, sterile water, syrup, and methyl cellulose. The composition may additionally comprise a lubricant such as talc, magnesium stearate, and mineral oil; a wetting agent; an emulsifier and a suspending agent; a preservative such as methyl and propyl hydroxybenzoate; a sweetener; and a flavoring agent . The compositions of the present invention provide a rapid, sustained, or delayed release of the active ingredient after administration to a patient.

依據本發明,組合物之形式可為片劑、丸劑、粉末、錠劑、包裝、錠劑、酏劑、懸浮液、洗劑、溶液、糖漿、軟與硬明膠膠囊、栓劑、滅菌注射液、及包裝粉末。According to the present invention, the composition may be in the form of tablets, pills, powders, troches, packages, lozenges, elixirs, suspensions, lotions, solutions, syrups, soft and hard gelatin capsules, suppositories, sterile injections, And packaging powder.

本發明組合物可經由任何生理上可接受途徑遞送,例如經口、非經口(如肌肉、靜脈、皮下、及腹膜)、經皮、栓劑、及鼻內方法。關於非經口投予,較佳地係以無菌水溶液形式使用,其可包含其他物質,如鹽或葡萄糖,足以使溶液與血液等張。水溶液可視需求適當緩衝(如採用pH值3至9)。無菌條件下適用非經口組合物之製備,可以本領域技術人員習知標準藥理學技術完成。The compositions of the invention may be delivered via any physiologically acceptable route, such as oral, parenteral (e.g., muscle, intravenous, subcutaneous, and peritoneal), transdermal, suppository, and intranasal methods. With regard to parenteral administration, it is preferably used in the form of a sterile aqueous solution which may contain other substances, such as salts or glucose, sufficient to cause the solution to be isotonic with blood. The aqueous solution can be suitably buffered as required (eg pH 3 to 9). The preparation of a parenteral composition under sterile conditions can be accomplished by standard pharmacological techniques well known to those skilled in the art.

在一些具體實施例中,將攜帶編碼本發明胜肽之核酸的病毒載體投予有需求之個體。許多病毒載體係本領域習知,包括例如,反轉錄病毒、慢病毒、腺病毒、腺相關病毒、單純皰疹病毒(HSV)、巨細胞病毒(CMV)、牛痘、脊髓灰白質炎病毒載體。較佳地,以複製缺陷病毒作為病毒載體,使得重組型細胞株與重組型病毒載體的轉形作用不導致產生複製勝任病毒,例如,利用重組型細胞株病毒序列之同源重組導入病毒載體。本發明DNA亦可利用非病毒載體投予,例如,DNA或RNA微脂體複合物配方。此類複合物包含脂質混合物,其結合核酸(DNA或RNA),提供疏水外層,其容許將遺傳物質遞送至細胞中。In some embodiments, a viral vector carrying a nucleic acid encoding a peptide of the invention is administered to an individual in need thereof. Many viral vectors are known in the art and include, for example, retroviruses, lentiviruses, adenoviruses, adeno-associated viruses, herpes simplex virus (HSV), cytomegalovirus (CMV), vaccinia, poliovirus vectors. Preferably, the replication-deficient virus is used as a viral vector such that the transformation of the recombinant cell strain and the recombinant viral vector does not result in the production of a replication competent virus, for example, introduction into a viral vector by homologous recombination of the recombinant cell strain viral sequence. The DNA of the present invention can also be administered using a non-viral vector, for example, a DNA or RNA liposome complex formulation. Such complexes comprise a lipid mixture that binds to a nucleic acid (DNA or RNA), providing a hydrophobic outer layer that allows delivery of genetic material into the cell.

3.3. Take TIFATIFA 胜肽片段作為Peptide fragment as TIFATIFA 拮抗劑用於治療Antagonist for treatment TIFATIFA 相關聯之疾病的治療用途Therapeutic use of associated diseases

TIFA利用例如發炎性細胞介素或脂多醣(LPS)等各類刺激參與NF-κB活化作用。出乎意料的是,本發明發現,本文所述之TIFA片段能抑制TIFA活化作用及所產生之NF-κB活化作用(TIFA活化作用/NF-κB活化作用)。因此,本文所述TIFA片段之任一者,其具有對TIFA活化作用及所產生NF-κB活化作用的抑制活性,可用於抑制有此類治療需求之個體的TIFA活化作用與所產生NF-κB活化作用,從而有利於治療與異常TIFA活化作用及/或NF-κB活化作用相關聯之疾病或病症。TIFAs are involved in NF-κB activation using various stimuli such as inflammatory interleukins or lipopolysaccharide (LPS). Unexpectedly, the present inventors have found that the TIFA fragments described herein inhibit TIFA activation and the resulting NF-κB activation (TIFA activation/NF-κB activation). Thus, any of the TIFA fragments described herein have inhibitory activity against TIFA activation and NF-κB activation, and are useful for inhibiting TIFA activation and NF-κB production in individuals with such therapeutic needs. Activation to facilitate treatment of a disease or condition associated with abnormal TIFA activation and/or NF-κB activation.

依據本發明,TIFA胜肽片段必須包括二聚合核心胜肽區段 (F2結構域),其可在N端連接Thr9胜肽區段(F1結構域)或在C端連接TRAF6/TRAF2交互作用胜肽區段(F3結構域)。在一具體實施例中,本發明TIFA胜肽片段包括F1/F2片段,其中Thr9胜肽區段(F1結構域)與二聚合核心胜肽區段(F2結構域)連接,由N端至C端,其缺少TRAF6/TRAF2交互作用胜肽區段(F3結構域)。在另一具體實施例中,本發明TIFA胜肽片段包括F2/F3片段,其中二聚合核心胜肽區段(F2結構域)與TRAF6/TRAF2交互作用胜肽區段(F3結構域)連接,由N端至C端,其缺少Thr9胜肽區段(F1結構域)。本發明首先證明,此TIFA胜肽片段可作為TIFA的顯性負抑制劑,其有效干擾內源性TIFA的自身結合,從而可減弱TIFA活化及所產生之NF-κB活化,具體而言細胞介素誘發之NF-κB活化作用,因此可治療與異常TIFA活化作用及/或NF-κB活化作用相關聯之疾病或病症。According to the present invention, the TIFA peptide fragment must include a dimeric core peptide segment (F2 domain) which can be linked to the Thr9 peptide segment (F1 domain) at the N-terminus or to the TRAF6/TRAF2 interaction at the C-terminus. Peptide segment (F3 domain). In a specific embodiment, the TIFA peptide fragment of the invention comprises an F1/F2 fragment, wherein the Thr9 peptide segment (F1 domain) is linked to the dimeric core peptide segment (F2 domain), from N-terminus to C End, which lacks the TRAF6/TRAF2 interaction peptide segment (F3 domain). In another specific embodiment, the TIFA peptide fragment of the invention comprises an F2/F3 fragment, wherein the dimeric core peptide peptide segment (F2 domain) is linked to the TRAF6/TRAF2 interaction peptide segment (F3 domain), From the N-terminus to the C-terminus, it lacks the Thr9 peptide segment (F1 domain). The present invention first demonstrates that this TIFA peptide fragment can act as a dominant negative inhibitor of TIFA, which effectively interferes with the self-binding of endogenous TIFA, thereby attenuating TIFA activation and NF-κB activation, specifically Inducing NF-κB activation, thus treating diseases or conditions associated with abnormal TIFA activation and/or NF-κB activation.

欲實施本文所揭示方法,可以一有效量之組合物如本文所述醫藥組合物,包含TIFA片段或其編碼核酸,投予經適用途徑治療之有需求個體(例如,人類)。本文中使用的「有效量」乙詞意指在治療的個體或細胞中賦予所需生物學效應之活性成分量。有效量可依據各原因而變,例如投予途徑與頻率、接受該醫藥個體之體重與物種、及投予目的。基於本文揭示內容、建立之方法、及其自身經驗,本領域技術人員可決定各情況下之劑量。To carry out the methods disclosed herein, an effective amount of a composition, such as a pharmaceutical composition described herein, comprising a TIFA fragment or a nucleic acid encoding the same, can be administered to a subject in need (e.g., a human) treated by a suitable route. As used herein, the term "effective amount" means the amount of active ingredient that imparts the desired biological effect in the individual or cell being treated. The effective amount may vary depending on various reasons, such as the route and frequency of administration, the weight and species of the individual receiving the drug, and the purpose of administration. Based on the disclosure, methods of establishment, and its own experience, one skilled in the art can determine the dosage in each case.

欲利用本文所述方法治療之個體可為哺乳類動物,更佳地為人類。哺乳類動物包括但不侷限於,農場動物、運動動物、寵物、靈長類動物、馬、狗、貓、小鼠、及大鼠。需要治療的人類個體可為患有風險或疑似患有標的疾病/病症(如癌症或發炎性疾病)的人類病患。疑似患有此標的疾病/病症任一者之個體可能顯示該疾病/病症之一或多個症狀。患有疾病/病症風險之個體可為具有該疾病/病症之一或多個危險因子的個體。The individual to be treated by the methods described herein can be a mammal, more preferably a human. Mammals include, but are not limited to, farm animals, sport animals, pets, primates, horses, dogs, cats, mice, and rats. A human subject in need of treatment can be a human patient at risk or suspected of having the underlying disease/condition (eg, cancer or inflammatory disease). An individual suspected of having any of the diseases/conditions of this subject may exhibit one or more symptoms of the disease/condition. An individual at risk of having a disease/condition can be an individual having one or more risk factors for the disease/condition.

異常TIFA活化與各種疾病與病症相關聯。在一些具體實施例中,TIFA活化相關聯之疾病或病況為發炎性疾病,係因TIFA活化作用,如細胞介素刺激性NF-κB活化作用。此類疾病或病症之實例包括但不侷限於,肝炎、動脈粥樣硬化、肺動脈高壓、心肌病、類風濕性關節炎、發炎性腸病、及法布里病。在其他具體實施例中,TIFA活化相關聯之疾病或病況為癌症,具體而言為與慢性發炎或發炎性病況相關聯之癌症。本發明欲治療之癌症之一實例為血液癌症,其係選自於由淋巴瘤(包括霍奇金淋巴瘤、非霍奇金淋巴瘤、兒童淋巴瘤、及淋巴細胞與皮膚淋巴瘤)、白血病(包括兒童白血病、毛細胞白血病、急性淋巴細胞性白血病、急性骨髓細胞性白血病、慢性淋巴細胞性白血病、慢性骨髓細胞性白血病、及肥大細胞白血病)、骨髓腫瘤、及肥大細胞腫瘤組成之群組。本發明欲治療之癌症之其他實例為與慢性發炎或發炎性病況相關聯之癌症,包括直腸癌、肺癌、胃腸癌、前列腺癌、胰腺癌、淋巴瘤、卵巢癌、及乳癌。Abnormal TIFA activation is associated with a variety of diseases and conditions. In some embodiments, the disease or condition associated with TIFA activation is an inflammatory disease due to TIFA activation, such as interleukin-stimulated NF-κB activation. Examples of such diseases or conditions include, but are not limited to, hepatitis, atherosclerosis, pulmonary hypertension, cardiomyopathy, rheumatoid arthritis, inflammatory bowel disease, and Fabry disease. In other specific embodiments, the disease or condition associated with TIFA activation is cancer, in particular cancer associated with chronic inflammatory or inflammatory conditions. An example of a cancer to be treated according to the invention is a hematological cancer selected from lymphoma (including Hodgkin's lymphoma, non-Hodgkin's lymphoma, childhood lymphoma, and lymphocytes and cutaneous lymphoma), leukemia (including children with leukemia, hairy cell leukemia, acute lymphocytic leukemia, acute myeloid leukemia, chronic lymphocytic leukemia, chronic myeloid leukemia, and mast cell leukemia), bone marrow tumors, and mast cell tumors . Other examples of cancers to be treated by the present invention are cancers associated with chronic inflammatory or inflammatory conditions, including rectal cancer, lung cancer, gastrointestinal cancer, prostate cancer, pancreatic cancer, lymphoma, ovarian cancer, and breast cancer.

在一特定具體實施例中,個體或受試者可為患有白血病風險的哺乳類動物。In a particular embodiment, the individual or subject can be a mammal having a risk of leukemia.

本文中所用的「治療」乙詞意指將包括一或多個活性劑之組合物施加或投予個體,其患有病症(如糖尿病、動脈粥樣硬化、及其他發炎性疾病)、病症之症狀或病況、或病症之進展或傾向,目的在於治癒、癒合、減輕、緩解、改變、補救、改善、改進、或影響病症、病症之症狀或病況、病症引起之失能、或病症之進展或傾向。因此,「治療」乙詞亦可包括,取決於欲治療個體的病況,預防病症,包括預防病症發作或與其相關的任何症狀,以及降低或減輕疾病嚴重性或任何其發病前之症狀。As used herein, "treatment" refers to the application or administration of a composition comprising one or more active agents to a subject suffering from a condition (eg, diabetes, atherosclerosis, and other inflammatory diseases), a condition The condition or condition, or the progression or tendency of the condition, is intended to heal, heal, alleviate, alleviate, alter, remedy, improve, improve, or affect the condition, the condition or condition of the condition, the disability caused by the condition, or the progression of the condition or tendency. Thus, the term "treatment" can also include, depending on the condition of the individual to be treated, preventing the condition, including preventing the onset of the condition or any symptoms associated therewith, and reducing or reducing the severity of the disease or any symptoms prior to its onset.

本文中使用的「抗癌治療」乙詞可指將抗癌劑或放射線照射投予具有腫瘤或癌症之個體,例如,提供抑制腫瘤或癌症細胞生長或增生,或誘發毒殺的作用。本文中使用的「抗癌劑」乙詞可包括化學治療劑或分子標靶劑。「化學抗性(chemoresistant)」乙詞可指腫瘤或癌症細胞對化學治療中使用的化學治療劑呈現很少或無顯著可檢測的治療反應。一些化學治療劑誘發化學抗性,其可導致腫瘤細胞群的存活,隨後於治療後復發。本文中使用的「標準劑量」可指治療劑之有效劑量,其由醫藥界權威來源(包括食品與藥物管理局)推薦且常用於常規實踐。本文中使用的「減少劑量」可指相同治療劑之一劑量低於標準劑量但仍保留實質上相同治療效果。特定而言,依據本發明,化學治療劑之減少劑量為相同藥劑標準治療劑量的約90%以下、80%以下、70%以下、60%以下、或50%以下。The term "anti-cancer treatment" as used herein may refer to administration of an anticancer agent or radiation to an individual having a tumor or cancer, for example, to provide inhibition of tumor or cancer cell growth or proliferation, or to induce poisoning. The term "anticancer agent" as used herein may include a chemotherapeutic agent or a molecular target agent. "Chemoresistant" may mean that a tumor or cancer cell exhibits little or no significant detectable therapeutic response to a chemotherapeutic agent used in chemotherapy. Some chemotherapeutic agents induce chemical resistance, which can lead to the survival of tumor cell populations, followed by recurrence after treatment. As used herein, "standard dose" can refer to an effective dose of a therapeutic agent that is recommended by an authoritative source of the pharmaceutical industry, including the Food and Drug Administration, and is commonly used in routine practice. As used herein, "reduced dose" can mean that one of the same therapeutic agents is below the standard dose but still retains substantially the same therapeutic effect. In particular, according to the present invention, the reduced dose of the chemotherapeutic agent is about 90% or less, 80% or less, 70% or less, 60% or less, or 50% or less of the standard therapeutic dose of the same pharmaceutical agent.

一些癌症病患可能對抗癌劑反應不良,且可能需要高劑量以達到所需治療效果。本發明令人驚訝地發現,抑制TIFA活化可增進抗癌劑之化學毒性/降低化學抗性,其導致促進治療功效。特定而言,當抑制癌細胞之TIFA活化時(如利用TIFA片段作為TIFA顯性負抑制劑),相較於未抑制TIFA活化,抑制癌細胞增生所需之抗癌劑劑量降低;且抗癌劑與TIFA拮抗劑(如本文所用的TIFA片段)之組合,相較於單獨使用抗癌藥物之治療,提供以協同方式增進抗癌作用,如減少腫瘤體積。Some cancer patients may be responsive to anticancer agents and may require high doses to achieve the desired therapeutic effect. The present inventors have surprisingly found that inhibition of TIFA activation enhances the chemical toxicity/reduction of chemoresistance of anticancer agents, which leads to the promotion of therapeutic efficacy. In particular, when inhibiting TIFA activation of cancer cells (eg, using TIFA fragments as a dominant negative inhibitor of TIFA), the dose of anticancer agent required to inhibit proliferation of cancer cells is reduced compared to uninhibited TIFA activation; and anticancer The combination of a agent with a TIFA antagonist (such as the TIFA fragment used herein) provides a synergistic increase in anti-cancer effects, such as a reduction in tumor volume, compared to treatment with an anti-cancer drug alone.

本文中使用的「TIFA拮抗劑」乙詞意指可實質上降低、抑制、阻斷、及/或減輕TIFA活化之物質或藥劑,其包括但不限於,磷酸化作用與寡聚合作用,及隨後的NF-κB活化作用,具體而言係由發炎性細胞介素或病理壓力之刺激引起者。除了TIFA片段作為上述TIFA顯性負抑制劑之外,TIFA拮抗劑可包括針對TIFA基因之反義核酸分子或針對TIFA核酸之小型干擾RNA (siRNA),其可用於本發明。As used herein, the term "TIFA antagonist" means a substance or agent that substantially reduces, inhibits, blocks, and/or mitigates TIFA activation, including, but not limited to, phosphorylation and oligomerization, and subsequently Activation of NF-κB, in particular by stimulation of inflammatory interleukins or pathological stress. In addition to the TIFA fragment as a dominant negative inhibitor of TIFA described above, TIFA antagonists may include antisense nucleic acid molecules directed against the TIFA gene or small interfering RNA (siRNA) directed against TIFA nucleic acids, which may be used in the present invention.

在一些具體實施例中,TIFA拮抗劑包含至少一能阻斷或減少功能性TIFA表現的反義核酸分子。TIFA之核苷酸序列係習知,且易於由公眾可獲得數據庫中取得。常規上可製備反義寡核苷酸分子,其將特異性結合標靶mRNA而不與其他多核苷酸交叉反應。靶向之示例性位點包括但不侷限於,起始密碼子、5'調節區、編碼序列、及3'非轉譯區。在一特定具體實施例中,靶向之示例性位點位於TIFA之編碼序列。在一些具體實施例中,寡核苷酸長度為約10至100個核苷酸、長度為約15至50個核苷酸、長度為約18至25個核苷酸等。寡核苷酸可包含骨架修飾,例如硫代磷酸酯鍵,及本領域習知之2'-0糖修飾。In some embodiments, the TIFA antagonist comprises at least one antisense nucleic acid molecule capable of blocking or reducing the expression of a functional TIFA. The nucleotide sequence of TIFA is well known and readily available in publicly available databases. Antisense oligonucleotide molecules can be prepared conventionally that will specifically bind to the target mRNA without cross-reacting with other polynucleotides. Exemplary sites for targeting include, but are not limited to, a start codon, a 5' regulatory region, a coding sequence, and a 3' non-translated region. In a specific embodiment, an exemplary site of targeting is located in the coding sequence of the TIFA. In some embodiments, the oligonucleotide is from about 10 to 100 nucleotides in length, from about 15 to 50 nucleotides in length, from about 18 to 25 nucleotides in length, and the like. Oligonucleotides may comprise backbone modifications, such as phosphorothioate linkages, and 2'-0 sugar modifications as are known in the art.

4. TIFA4. TIFA 作為As AMLAML 預後不良之標記Mark of poor prognosis

本發明亦基於發現TIFA可作為AML預後不良之標記。如以下實例所示,具有較高TIFA蛋白量的AML病患看來是比具有比較低TIFA量之AML病患具有更高的白血球細胞(WBC)及爆發計數(blast counts)。此外,AML病患中較高TIFA表現者係與較低反應率相關聯,且在追蹤後,較高TIFA表現之患者與彼等較低TIFA表現者相比,總存活期(OS)及無病存活期(DFS)顯著縮短。The present invention is also based on the discovery that TIFA can be used as a marker for poor prognosis of AML. As shown in the examples below, AML patients with higher amounts of TIFA protein appear to have higher white blood cell (WBC) and blast counts than AML patients with lower TIFA levels. In addition, higher TIFA manifestations in AML patients were associated with lower response rates, and after tracing, patients with higher TIFA performance had overall survival (OS) and no disease compared with those with lower TIFA performance. Survival (DFS) was significantly shortened.

因此,本發明提供一種依據TIFA蛋白量預測白血病預後的方法。具體而言,本發明方法包含測定取自白血病病患樣本之TIFA表現量,且依據樣本中TIFA表現量確定病患之白血病預後,其中樣本中TIFA量升高表示預後不良。Accordingly, the present invention provides a method for predicting the prognosis of leukemia based on the amount of TIFA protein. Specifically, the method of the present invention comprises determining the amount of TIFA expression taken from a leukemia patient sample, and determining the prognosis of the leukemia of the patient based on the amount of TIFA expression in the sample, wherein an increase in the amount of TIFA in the sample indicates a poor prognosis.

本文中使用的量升高係指與無癌症或發炎性疾病問題或參考量或對照量之個體的量相比,具有提高的量。舉例而言,量升高可為高於參考量或對照量達大於10%、20%、30%、40%、50%、60%、70%、80%、90%、或100%。參考量或對照量可指在正常個體或樣本類型(如未患病之組織或細胞)所測定之量。As used herein, an increase in amount refers to an increased amount compared to the amount of a subject having no cancer or inflammatory disease or a reference or control amount. For example, the amount increase can be greater than 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or 100% above the reference or control amount. A reference or control amount can refer to an amount measured in a normal individual or sample type (eg, tissue or cells that are not diseased).

本文中使用的經本文所述之任何方法分析的生物樣本可為取自欲診斷個體之任何類型樣本,較佳地血液樣本。典型上,血液樣本可為全血或其分液,如周邊單核細胞,或血漿,其係經肝素化或EDTA處理以避免血液凝固(血清)。或者,生物樣本可為組織樣本或活檢樣本。The biological sample analyzed herein by any of the methods described herein can be any type of sample, preferably a blood sample, taken from the individual to be diagnosed. Typically, the blood sample can be whole blood or a fraction thereof, such as peripheral monocytes, or plasma, which is heparinized or EDTA treated to avoid blood coagulation (serum). Alternatively, the biological sample can be a tissue sample or a biopsy sample.

具體而言,本發明用於預測白血病病患預後之方法包含: (a) 在第一時間點測定取自病患之第一生物樣本的TIFA量; (b) 在第二時間點測定取自病患之第二生物樣本的TIFA量;以及 (c) 依據第一與第二生物樣本的量確定病患的白血病進展,其中與第一生物樣本相比,以第二生物樣本的TIFA量升高代表白血病的進展。Specifically, the method of the present invention for predicting the prognosis of a leukemia patient comprises: (a) measuring the amount of TIFA taken from the first biological sample of the patient at the first time point; (b) taking the measurement at the second time point. The amount of TIFA in the second biological sample of the patient; and (c) determining the progression of leukemia in the patient based on the amount of the first and second biological samples, wherein the amount of TIFA in the second biological sample is increased compared to the first biological sample High represents the progress of leukemia.

本發明進一步以下列實施例說明,其提供旨在證實而非侷限。鑑於本發明,本領域技術人員應理解到,在不背離本發明精神與範疇之情況下,所揭示之特定具體實施例可進行許多改變,且仍能獲得相似或類似之結果。The invention is further illustrated by the following examples, which are provided for purposes of illustration and not limitation. In view of the present invention, it will be appreciated by those skilled in the art that the invention may be

實施例Example

1.11.1 細胞培養、人類周邊血液單核細胞Cell culture, human peripheral blood mononuclear cells (PBMCs)(PBMCs) 之分離、及Separation, and TNF-αTNF-α 刺激作用Stimulating effect

Hela、293T、及HL-60細胞株取自中央研究院Li-Jung Juan博士(台北,台灣,2014)、KG-1細胞株取自台中榮民總醫院Shih-Lan Hsu教授(台中,台灣,2015)、及其餘細胞株取自中央研究院Shui-Tein Chen博士(台北,台灣,2015)。所有細胞株於收到時皆擴增並儲存於液態氮。將原始小瓶解凍用於彼等實驗,並同時利用Promega GenePrintâ 10 System進行STR DNA指紋鑑定,且以ABI PRISM 3730 GENETIC ANALYZER與GeneMapperâ 軟體分析。所有得到的STR輪廓與習知ATCC指紋(ATCC.org)吻合。各細胞株按照發明人先前方法維持(20,27,28)。293T與HeLa細胞維持在Dulbecco’s改良Eagle’s培養基(DMEM,Gibco)。初代PBMCs、HL-60、KG-1、THP-1、U937、Jurkat、及K562細胞維持在Roswell Park Memorial Institute培養基(RPMI-1640,Invitrogen)。所有培養基皆補充10%去補充之胎牛血清(FBS,Gibco)、200 mM L-麩胺醯胺酸(Gibco)、100 U/mL青黴素(Gibco)、及100 mg/mL鏈黴素(Gibco)。所有細胞培養於37°C及5% CO2 之潮濕環境中。欲分離人類PBMC,如前所述(28),將新鮮獲得的全血在Ficoll (GE healthcare)上分層。依據先前所述方法維持分離之初代細胞(29),並於二週內進行實驗分析。必要時,在加入10 ng/mL的TNF-α (R&D Systems) 30分鐘或指定時間點之前,細胞於無血清條件下飢餓8小時。Hela, 293T, and HL-60 cell lines were taken from Dr. Li-Jung Juan (Taipei, Taiwan, 2014), and the KG-1 cell line was taken from Professor Shih-Lan Hsu of Taichung Veterans General Hospital (Taiwan, Taiwan, 2015), and the remaining cell lines were taken from Dr. Shui-Tein Chen of the Central Research Institute (Taipei, Taiwan, 2015). All cell lines were amplified and stored in liquid nitrogen upon receipt. The vial was thawed for their original experiments, while using the Promega GenePrint â 10 System for STR DNA fingerprinting, and with the ABI PRISM 3730 GENETIC ANALYZER GeneMapper â analysis software. All resulting STR profiles coincided with the conventional ATCC fingerprint (ATCC.org). Each cell line was maintained according to the inventors' previous methods (20, 27, 28). 293T and HeLa cells were maintained in Dulbecco's Modified Eagle's Medium (DMEM, Gibco). Primary PBMCs, HL-60, KG-1, THP-1, U937, Jurkat, and K562 cells were maintained in Roswell Park Memorial Institute medium (RPMI-1640, Invitrogen). All media supplemented with 10% fetal bovine serum (FBS, Gibco), 200 mM L-glutamic acid (Gibco), 100 U/mL penicillin (Gibco), and 100 mg/mL streptomycin (Gibco) ). All cells were cultured in a humidified environment at 37 ° C and 5% CO 2 . To isolate human PBMC, freshly obtained whole blood was layered on Ficoll (GE healthcare) as previously described (28). The isolated primary cells (29) were maintained according to the methods previously described and assayed in two weeks. When necessary, the cells were starved for 8 hours under serum-free conditions by adding 10 ng/mL of TNF-α (R&D Systems) for 30 minutes or before the indicated time point.

1.21.2 質體及Platinum and siRNAsiRNA 合成synthesis

以pCDNA3.1載體攜帶全長TIFA野生型,接著為合成的HA-標籤,且將全長的奧洛拉A構築於相同的載體,除了使用Flag-標籤之外。針對反轉錄病毒轉導,以聚合酶鏈反應(PCR)擴增全長(具有TIFA siRNA抗性沉默突變之野生型或T9A突變體)及TIFA片段,並由pLNCX載體(Clontech)攜帶,接著為二連續Myc-標籤,如前述(27)。pNF-kB-Luc質體係贈自L.-P. Ting博士(國立陽明大學,台灣)。所有構築體在實驗應用前皆定序確認。雙股siRNA寡聚體相對應於序列5'-UCA GGA CAA ACA GGU UUC CCG AGU U-3' (SEQ ID NO: 95)以靶向TIFA (20),其係由GeneScript合成,奧洛拉A標靶siRNA購自Cell Signalling (#8883),且對照組寡聚體購自GeneScript。The full-length TIFA wild type was carried in the pCDNA3.1 vector, followed by the synthetic HA-tag, and the full-length Alora A was constructed on the same vector except that the Flag-tag was used. For retroviral transduction, full-length (wild-type or T9A mutant with TIFA siRNA-resistant silencing mutation) and TIFA fragment were amplified by polymerase chain reaction (PCR) and carried by pLNCX vector (Clontech), followed by two Continuous Myc-tag, as previously described (27). The pNF-kB-Luc system was presented by Dr. L.-P. Ting (National Yangming University, Taiwan). All constructs were sequenced prior to experimental application. The double stranded siRNA oligomer corresponds to the sequence 5'-UCA GGA CAA ACA GGU UUC CCG AGU U-3' (SEQ ID NO: 95) to target TIFA (20), which is synthesized by GeneScript, Aurora A Target siRNA was purchased from Cell Signalling (#8883) and control oligomers were purchased from GeneScript.

1.31.3 反轉錄定量Reverse transcription PCRPCR (RT-qPCR)(RT-qPCR)

利用即時定量PCR檢查特定基因的轉錄程度,如前述,並進行微小修改(27)。在siRNA轉染後第3天,按照製造商說明書(Invitrogen),以TRIzol試劑從收取的細胞中萃取總RNA,並自DNase I (Invitrogen)處理的總RNA中,於oligo-dT (Invitrogen)存在下,利用SuperScript® III套組(Invitrogen)合成第一鏈cDNAs,其係依據製造商的方法。以基因特異性引子補充SYBR Green (Roche),進行RT-qPCR,並以LightCycler® 480 (Roche)進行分析。The degree of transcription of a particular gene was examined by real-time quantitative PCR as described above with minor modifications (27). On day 3 after siRNA transfection, total RNA was extracted from the harvested cells with TRIzol reagent according to the manufacturer's instructions (Invitrogen) and was present in oligo-dT (Invitrogen) from total RNA treated with DNase I (Invitrogen). First-strand cDNAs were synthesized using the SuperScript® III kit (Invitrogen) according to the manufacturer's protocol. SYBR Green (Roche) was supplemented with gene-specific primers for RT-qPCR and analyzed by LightCycler® 480 (Roche).

1.41.4 質體與Platinum and siRNAsiRNA 之短暫轉染Transient transfection

針對短暫轉染293T細胞,利用Jet-PEI (Polyplus Transfection),將2 µg指示質體DNA轉染6 x 105 個細胞48小時(pCDNA3.1載體,HA-標籤之TIFA,及pNF-kB-Luc)或24小時(Flag-標籤之奧洛拉A),其係按照製造商說明書。針對短暫轉染U937細胞,利用Lipofectamine 2000 (Invitrogen),將3 μg之pNF-kB-Luc質體DNA轉染106 個懸浮細胞48小時,其係按照製造商說明書。欲靜默特定基因,在Opti-MEM (Invitrogen)存在下,以30 pmol (293T細胞)或50 pmol (懸浮細胞)的指示siRNA補充9或15 μL的Lipofectamine RNAiMAX (Invitrogen),轉染6 x 105 個293T細胞或106 個懸浮細胞,其係按照製造商說明書。首次轉染後6小時,將細胞培養於常規培養基24小時,並以相同方法進行第二次siRNA轉染。在培養72小時後,收集細胞或條件培養基。For transient transfection of 293T cells, 2 μg of indicated plastid DNA was transfected into 6 x 10 5 cells for 48 hours using Jet-PEI (Polyplus Transfection) (pCDNA3.1 vector, HA-tagged TIFA, and pNF-kB- Luc) or 24 hours (Flag-labeled Aurora A), according to the manufacturer's instructions. For U937 cells transiently transfected using Lipofectamine 2000 (Invitrogen), 3 μg of the pNF-kB-Luc plasmid DNA is transfected 106 suspension cells for 48 hours, the system according to the manufacturer instructions. To silence specific genes, add 9 or 15 μL of Lipofectamine RNAiMAX (Invitrogen) in the presence of Opti-MEM (Invitrogen) with 30 pmol (293T cells) or 50 pmol (suspended cells), transfected 6 x 10 5 293T cells, or a 106 cell suspension, which line according to the manufacturer instructions. Six hours after the first transfection, the cells were cultured in a conventional medium for 24 hours, and a second siRNA transfection was performed in the same manner. After 72 hours of culture, cells or conditioned medium were collected.

1.51.5 反轉錄病毒系穩定株之製備Preparation of retroviral stable strains

欲進行反轉錄病毒轉導,在VSV-G存在下,以泛嗜反轉錄病毒表現系統(pantropic retroviral expression system)包裝假型病毒,其係按照製造商說明書(Clontech),並進行指定細胞之感染,如前述(27)。在以400 mg/mL G418篩選數週後,在實驗分析或siRNA轉染以進行表型救援實驗之前,利用西方墨點分析確認穩定細胞中的異位蛋白表現。For retroviral transduction, a pseudotyped virus is packaged in the presence of VSV-G in a pantropic retroviral expression system, according to the manufacturer's instructions (Clontech), and is infected with the designated cells. , as described in (27) above. After several weeks of screening with 400 mg/mL G418, Western blot analysis was used to confirm ectopic protein expression in stable cells prior to experimental analysis or siRNA transfection for phenotypic rescue experiments.

1.61.6 細胞處理Cell processing

本研究使用的所有化療藥物取得如下:依托泊苷(VP-16)購自Sigma;伊達比星與阿糖胞苷(Ara-C)購自Phizer;順鉑購自The European Directorate for the Quality of Medicines & HealthCare (EDQM);索拉非尼(Rafi)購自Santa Cruz Biotechnology;依那西普(Enbrel,TNF-α抑制劑)購自Wyeth;硼替佐米(Velcade,NF-κB抑制劑)購自Janssen Pharmaceutica;ABT-263 (Navitoclax,BCL-2抑制劑)購自AdooQ Bioscience。在以X光放射線照射細胞處理方面,係以Faxitron RX-650輻照器(Faxitron X-ray Corporation)進行,其劑量速率為0.46Gy/min。必要時,細胞在無血清條件下飢餓8小時,之後加入10 ng/mL的TNF-α (R&D Systems) 30分鐘或指定的時間點。All chemotherapy drugs used in this study were obtained as follows: Etoposide (VP-16) was purchased from Sigma; Idarubicin and Cytarabine (Ara-C) were purchased from Phizer; Cisplatin was purchased from The European Directorate for the Quality of Medicines & HealthCare (EDQM); Rafi was purchased from Santa Cruz Biotechnology; Enbrel (TNF-α inhibitor) was purchased from Wyeth; Bortezomib (Velcade, NF-κB inhibitor) was purchased. From Janssen Pharmaceutica; ABT-263 (Navitoclax, BCL-2 inhibitor) was purchased from AdooQ Bioscience. The cell treatment with X-ray radiation was performed with a Faxitron RX-650 irradiator (Faxitron X-ray Corporation) at a dose rate of 0.46 Gy/min. When necessary, the cells were starved for 8 hours under serum-free conditions, after which 10 ng/mL of TNF-α (R&D Systems) was added for 30 minutes or at the indicated time points.

用於處理293T細胞的激酶抑制劑及條件如下:100 nM酪蛋白激酶II抑制劑III TBCA (CK2i)、500 nM 4-胺基-5-(溴甲基)-2-甲基嘧啶二氫溴酸鹽(GRKi)、及25 nM索拉非尼(Rafi)購自Santa Cruz Biotechnology;200 nM壞死他汀因子-1(necrostatin-1)(RIPK1i)與10 nM GÖ 6976 (PKCi)購自Tocris Bioscience;50 nM Akt抑制劑VI (Akti)、300 nM IRAK-1/4抑制劑(IRAK1/4i)、及10 nM (5Z)-7-氧基紫醇(oxozeaenol)(TAK1i)購自Merck Millipore;500 nM咖啡酸苯乙酯(CAPE,NF-κBi)購自Sigma;10 nM VX680 (奧洛拉Ai)購自Selleck Chemicals;50 nM MK-5108 (Aurora Ai)購自AdooQ Bioscience。Kinase inhibitors and conditions for the treatment of 293T cells are as follows: 100 nM casein kinase II inhibitor III TBCA (CK2i), 500 nM 4-amino-5-(bromomethyl)-2-methylpyrimidine dihydrobromide Acid salt (GRKi), and 25 nM sorafenib (Rafi) were purchased from Santa Cruz Biotechnology; 200 nM necrostatin-1 (RIPK1i) and 10 nM GÖ 6976 (PKCi) were purchased from Tocris Bioscience; 50 nM Akt inhibitor VI (Akti), 300 nM IRAK-1/4 inhibitor (IRAK1/4i), and 10 nM (5Z)-7-oxy violet alcohol (oxozeaenol) (TAK1i) were purchased from Merck Millipore; nM caffeic acid phenethyl ester (CAPE, NF-κBi) was purchased from Sigma; 10 nM VX680 (Aolora Ai) was purchased from Selleck Chemicals; 50 nM MK-5108 (Aurora Ai) was purchased from AdooQ Bioscience.

1.71.7 抗體antibody

TIFA特異性單株抗體之引發如前述(20)。抗奧洛拉A、抗磷酸化奧洛拉A(Thr288)、抗Bcl-2、及抗Bcl-XL 購自Cell Signalling。抗His-標籤購自SignalChem。抗Myc、抗Flag、及抗HA購自Sigma。抗IκKα(磷酸化T23)、抗IκBα(磷酸化S32+S36)、抗人類CD45 PerCP/Cy5.5、抗人類CD33 FITC、抗β-肌動蛋白、及抗Bax購自Abcam。抗NF-κB活化型p65次單元(殖株12H11)及山葵過氧化酶(HRP)共軛之抗小鼠或抗兔IgG購自Millipore。The initiation of TIFA-specific monoclonal antibodies is as described above (20). Anti-olola A, anti-phosphorylated alora A (Thr288), anti-Bcl-2, and anti-Bcl-X L were purchased from Cell Signalling. Anti-His-tags were purchased from SignalChem. Anti-Myc, anti-Flag, and anti-HA were purchased from Sigma. Anti-IκKα (phosphorylated T23), anti-IκBα (phosphorylated S32+S36), anti-human CD45 PerCP/Cy5.5, anti-human CD33 FITC, anti-β-actin, and anti-Bax were purchased from Abcam. Anti-NF-κB activated p65 subunit (colon 12H11) and wasabi peroxidase (HRP) conjugated anti-mouse or anti-rabbit IgG were purchased from Millipore.

1.8 1.8 體外激酶試驗In vitro kinase assay

實驗係依據發明人先前建立之方法(20)。指示處理之293T細胞係以CHAPS裂解緩衝液裂解(20 mM PIPES、1 mM Na3 VO4 、1 mM EGTA、50 mM Tris-HCl、150 mM NaCl、50 mM NaF、1% CHAPS、及10%甘油),其中補充蛋白酶抑制劑雞尾酒(Roche)與磷酸酶抑制劑(Sigma)。將細胞萃取物與重組型His-標籤之野生型或T9A突變體TIFA培養於反應緩衝液(40 mM HEPES pH 7.5、20 mM MgCl2 、及100 mM ATP),其係於1 mCi/mL [g-32 P]ATP (Perkin-Elmer)存在下,於37°C下反應30-90分鐘。然後,以塗佈抗His mAb的M-280 Dynabeads捕捉His標籤之蛋白。利用加入SDS樣本緩衝液且在95°C下加熱10分鐘終止反應,然後進行SDS-PAGE。利用放射自顯影術,顯示重組型蛋白上磷酸化作用程度。The experiment was based on the method previously established by the inventors (20). The indicated 293T cell line was lysed with CHAPS lysis buffer (20 mM PIPES, 1 mM Na 3 VO 4 , 1 mM EGTA, 50 mM Tris-HCl, 150 mM NaCl, 50 mM NaF, 1% CHAPS, and 10% glycerol) ), which is supplemented with a protease inhibitor cocktail (Roche) and a phosphatase inhibitor (Sigma). The cell extract was incubated with recombinant His-tagged wild-type or T9A mutant TIFA in reaction buffer (40 mM HEPES pH 7.5, 20 mM MgCl 2 , and 100 mM ATP) at 1 mCi/mL [g] - 32 P] ATP (Perkin-Elmer) was reacted at 37 ° C for 30-90 minutes. Then, the His-tagged protein was captured with M-280 Dynabeads coated with anti-His mAb. The reaction was terminated by the addition of SDS sample buffer and heating at 95 ° C for 10 minutes, followed by SDS-PAGE. The degree of phosphorylation on the recombinant protein was shown by autoradiography.

1.91.9 免疫沈澱法Immunoprecipitation

免疫沈澱實驗之進行如前述(28)。利用Jet-PEI (Polyplus Transfection),將5 µg載體或HA-TIFA轉染培養於p100培養盤之次滿293T細胞。於48小時後,將細胞以或不以10 ng/mL TNF-α (R&D Systems)處理30 min、以PBS清洗、及以CHAPS裂解緩衝液(20 mM PIPES、1 mM Na3 VO4 、1 mM EGTA、50 mM Tris-HCl、150 mM NaCl、50 mM NaF、1% CHAPS、及10%甘油)裂解,其中補充蛋白酶抑制劑雞尾酒(Roche)、磷酸酶抑制劑雞尾酒3 (Sigma)。於4°C下,將3 μg指示抗體事先塗佈100 mL M-280 Dynabeads (Invitrogen)整夜。於4°C下,將500 mg細胞萃取物培養於15 mL抗體塗佈的Dynabeads整夜。隨後,以Tris緩衝鹽水Tween 20 (TBST)緩衝液清洗蛋白-珠複合物,並進行西方墨點分析。The immunoprecipitation experiment was carried out as described in the above (28). 5 μg of vector or HA-TIFA was transfected into sub-full 293T cells of p100 culture plates using Jet-PEI (Polyplus Transfection). After 48 hours, cells were treated with or without 10 ng/mL TNF-α (R&D Systems) for 30 min, washed with PBS, and with CHAPS lysis buffer (20 mM PIPES, 1 mM Na 3 VO 4 , 1 mM Pyrolysis of EGTA, 50 mM Tris-HCl, 150 mM NaCl, 50 mM NaF, 1% CHAPS, and 10% glycerol was supplemented with a protease inhibitor cocktail (Roche) and a phosphatase inhibitor cocktail 3 (Sigma). 3 μg of the indicator antibody was previously coated with 100 mL of M-280 Dynabeads (Invitrogen) overnight at 4 °C. 500 mg of cell extract was incubated in 15 mL of antibody-coated Dynabeads overnight at 4 °C. Subsequently, the protein-bead complex was washed with Tris buffered saline Tween 20 (TBST) buffer and Western blot analysis was performed.

1.101.10 西方墨點法Western ink point method

欲取得完整細胞萃取物,以冰冷PBS清洗6 x 105 個293T細胞或106 個懸浮細胞,並於RIPA裂解緩衝液(50 mM Tris pH 7.4、150 mM NaCl、1% NP-40、0.5%去氧膽酸鈉、及0.1% SDS)中裂解,其中補充蛋白酶抑制劑雞尾酒(Roche)與磷酸酶抑制劑雞尾酒(Sigma)。在5次反覆凍融循環後,於4°C下離心清除細胞萃取物。利用Bradford試驗定量細胞萃取物,並將等量的可溶性蛋白與SDS樣本緩衝液混合、煮沸、通過SDS-PAGE分離,並墨點至PVDF薄膜(Millipore)上。隨後,薄膜以含有5%乾燥奶粉之PBST (其中補充0.1% Tween-20之PBS)緩衝液阻斷1小時,並於4°C下以初級抗體培養整夜,該抗體以含有1%牛血清白蛋白(Sigma)的PBST稀釋。在以PBST清洗三次後,將薄膜培養於HRP共軛鍵接之抗小鼠或抗兔IgG。薄膜以PBST清洗五次,且墨點蛋白層帶以ECL系統(Millipore)呈現。所有的西方墨點分析係獨立進行至少三次,除了初代PBMCs以外。To obtain intact cell extract, wash 6 x 10 5 293T cells or 10 6 suspension cells in ice-cold PBS and in RIPA lysis buffer (50 mM Tris pH 7.4, 150 mM NaCl, 1% NP-40, 0.5%) Lysate in sodium deoxycholate and 0.1% SDS) supplemented with a protease inhibitor cocktail (Roche) and a phosphatase inhibitor cocktail (Sigma). After 5 cycles of freeze-thaw cycles, the cell extract was removed by centrifugation at 4 °C. Cell extracts were quantified using the Bradford assay, and equal amounts of soluble protein were mixed with SDS sample buffer, boiled, separated by SDS-PAGE, and spotted onto a PVDF membrane (Millipore). Subsequently, the membrane was blocked with PBST containing 5% dry milk powder (PBS supplemented with 0.1% Tween-20) for 1 hour, and cultured overnight at 4 °C with primary antibody containing 1% bovine serum. Albumin (Sigma) was diluted in PBST. After washing three times with PBST, the membrane was cultured in HRP conjugated anti-mouse or anti-rabbit IgG. The film was washed five times with PBST and the dot layer of the dot protein was presented in an ECL system (Millipore). All Western blot analysis was performed at least three times independently, except for the primary PBMCs.

1.111.11 螢光素酶報導基因試驗Luciferase reporter gene assay

基於螢光素酶之NF-κB報導分析係如前述方式進行(20)。在收取前,培養於6孔培養盤各孔中全部6×105 個293T或106 個懸浮U937細胞於指定條件下,以2 mg的pNF-κB-Luc報導質體短暫轉染48小時。細胞以10 ng/mL TNF-α (R&D Systems)處理30 min,並以1x被動裂解緩衝液(Promega)裂解。將100 mg的細胞裂解液分配至96孔培養盤各孔中,接著加入100 mL的螢光素酶試驗緩衝液LARII (Promega)與100 mL的Stop & Glo試劑(Promega)。利用SpectraMax Paradigm多模式板讀數儀(Molecular Devices)三重複測定化學發光,並於細胞裂解液平行西方墨點分析中以相對應之β-肌動蛋白量進行標準化。實驗結果以三獨立實驗之相對發光單位(RLU)表示。The luciferase-based NF-κB reporter assay was performed as described above (20). All 6×10 5 293T or 10 6 suspension U937 cells cultured in each well of a 6-well culture plate were subjected to transient transfection for 48 hours with 2 mg of pNF-κB-Luc. Cells were treated with 10 ng/mL TNF-α (R&D Systems) for 30 min and lysed with 1 x passive lysis buffer (Promega). 100 mg of cell lysate was dispensed into each well of a 96-well plate, followed by 100 mL of luciferase assay buffer LARII (Promega) and 100 mL of Stop & Glo reagent (Promega). Chemiluminescence was measured in triplicate using a SpectraMax Paradigm multimode plate reader (Molecular Devices) and normalized to the corresponding amount of β-actin in a cell lysate parallel Western blot analysis. The experimental results are expressed in terms of relative luminescence units (RLU) of three independent experiments.

1.121.12 WST-1WST-1 細胞存活試驗Cell survival test

在指示條件下,將全部105 個懸浮細胞接種於96孔培養盤各孔中,並在處理後的指定時間點分析細胞存活率。WST-1試劑(Roche)以10倍稀釋方式混合於細胞,其係依據製造商說明書,並以SpectraMax Paradigm Plate Reader (Molecular Devices)讀取三重複結果之吸光度,其中標準化至第0天或模擬對照組。All 10 5 suspension cells were seeded in each well of a 96-well culture dish under the indicated conditions, and cell viability was analyzed at the indicated time points after treatment. WST-1 reagent (Roche) was mixed in cells at 10-fold dilution according to the manufacturer's instructions and the absorbance of the three replicates was read with a SpectraMax Paradigm Plate Reader (Molecular Devices), normalized to day 0 or mock control group.

1.131.13 病患樣本Patient sample

將2007年12月至2014年3月在台中榮民總醫院(VGHTC;AML#1-9)與台大醫院(NTUH;AML#10-16)診斷為新生AML的16例病患納入西方墨點分析、WST-1細胞存活率、及細胞凋亡試驗。彼等患者的平均爆發率(average of blasts)超過60%±18,其中4例例外(病患#2、9、12、及16),其於化療後採集血液樣本以抑制急性病症。欲進行免疫細胞化學染色分析,將2009年3月至2012年1月間在NTUH接受標準化療且有可用的冷凍保存BM細胞的85例成人AML病患納入(30,31)。依據「赫爾辛基宣言」,取得所有參與者的書面知情同意書,且所有實驗研究皆遵照機構協議(CE11166-2,VGHTC,No. 201408027RIND,NTUH,及AS-IRB02-103189與AS-IRB02-104147,中央研究院,台灣)。Sixteen patients diagnosed with neonatal AML at Taichung Veterans General Hospital (VGHTC; AML #1-9) and National Taiwan University Hospital (NTUH; AML #10-16) from December 2007 to March 2014 were included in Western blots. Analysis, WST-1 cell viability, and apoptosis assay. Their patients had an average of blasts of more than 60% ± 18, with 4 exceptions (patients #2, 9, 12, and 16), which took blood samples after chemotherapy to suppress acute conditions. For immunocytochemical staining analysis, 85 adult AML patients who received standard chemotherapy at NTUH between March 2009 and January 2012 and who had cryopreserved BM cells were included (30, 31). Written informed consent was obtained from all participants in accordance with the Helsinki Declaration, and all experimental studies were in accordance with the institutional agreement (CE11166-2, VGHTC, No. 201408027RIND, NTUH, and AS-IRB02-103189 and AS-IRB02-104147, Academia Sinica, Taiwan).

1.141.14 免疫細胞化學染色法Immunocytochemical staining

免疫細胞化學染色法如前所述,並進行微小修改(32)。85例病患的BM白血病細胞的細胞分離(cytospin)抹片於福馬林丙酮(3%)中固定3分鐘。標本隨後以過氧化酶阻斷酵素培養(10 min),接著使用TIFA單株抗體(1:200溶於阻斷溶液,4ºC下整夜)(20)。以生物素化驢抗小鼠IgG(1μg/ mL,以阻斷溶液稀釋,30分鐘;DAKO)作為二次抗體,並以鏈黴素-過氧化酶複合物(DAKO)檢測蛋白。標本以蘇木精進行對比染色。各標本以0至4計分,其係依據染色強度積分(0 = 無、1 = 弱、2 = 強)及骨髓細胞陽性染色百分比積分(0 = 0-25%、1 = 26-50%、2 = 51-00%)。Immunocytochemical staining was performed as previously described with minor modifications (32). Cytospin smears of BM leukemia cells from 85 patients were fixed in formalin acetone (3%) for 3 minutes. The specimens were then blocked with peroxidase blocking enzymes (10 min) followed by TIFA monoclonal antibodies (1:200 in blocking solution, overnight at 4oC) (20). Proteins were detected as biotinylated anti-mouse IgG (1 μg/mL, diluted with blocking solution, 30 min; DAKO) and detected by streptomycin-peroxidase complex (DAKO). Specimens were stained with hematoxylin. Each specimen was scored from 0 to 4, based on the intensity of staining intensity (0 = no, 1 = weak, 2 = strong) and the percentage of positive staining of bone marrow cells (0 = 0-25%, 1 = 26-50%, 2 = 51-00%).

1.151.15 細胞凋亡及流式細胞術分析Apoptosis and flow cytometry analysis

在siRNAs轉染後第2天,PBMCs以每孔106 個接種於6孔培養盤,隨後處理不同化療藥物。在48小時後,以冰冷PBS清洗細胞,並利用FITC膜聯蛋白V細胞凋亡檢測套組進行細胞凋亡檢測,其係按照製造商說明書(BD Biosciences)。隨後,依據前述方法(33),利用光散射門控(gated)細胞之骨髓譜系,以及細胞凋亡率,如利用碘化丙啶與FITC膜聯蛋白V的雙重染色,其係以BD FACSCalibur Flow Cytometer (BD FACSCalibur)分析,如前述(27)。欲分析異種移植模式中的U937細胞,BM細胞或小鼠PBMCs於冰上分別以抗人類CD33 FITC與CD45 PerCP/Cy5.5連續染色1小時。將細胞以冰冷PBS清洗,並進行流式細胞術,如上述。On day 2 after transfection of siRNAs, PBMCs were seeded in 6-well plates at 10 6 per well, followed by treatment with different chemotherapeutic drugs. After 48 hours, the cells were washed with ice-cold PBS and assayed for apoptosis using the FITC Annexin V cell apoptosis assay kit according to the manufacturer's instructions (BD Biosciences). Subsequently, according to the aforementioned method (33), the bone marrow lineage of the cell is gated by light scattering, and the apoptotic rate, such as double staining with propidium iodide and FITC annexin V, which is BD FACSCalibur Flow Cytometer (BD FACSCalibur) analysis, as described previously (27). To analyze U937 cells in xenograft mode, BM cells or mouse PBMCs were stained with anti-human CD33 FITC and CD45 PerCP/Cy5.5 for 1 hour on ice, respectively. The cells were washed with ice-cold PBS and subjected to flow cytometry as described above.

1.161.16 細胞介素與趨化介素分泌之評估Evaluation of interleukin and chemokine secretion (( 細胞介素陣列及Interleukin array and ELISA)ELISA)

在指定處理後72小時,收集等量U937細胞培養的條件培養基,並利用人類細胞介素陣列C1評估,其係按照製造商說明書(AAH-CYT-1,RayBiotech)。以ImageJ軟體擷取數據,並以陽性對照組標準化。當指定時,以酵素結合免疫吸附分析(ELISA)測試套組測定條件培養基中分泌之細胞介素與趨化介素的量,其係按照製造商說明書(R&D Systems)。利用SpectraMax Paradigm Plate Reader (Molecular Devices)讀取三重複樣本之析光度。所有原始數據皆以PBS對照組進行標準化,且其結果表示為三個獨立實驗之細胞介素相對分泌。At 72 hours after the indicated treatment, conditioned medium of the same amount of U937 cell culture was collected and evaluated using human interleukin array C1 according to the manufacturer's instructions (AAH-CYT-1, RayBiotech). Data was taken from ImageJ software and normalized to the positive control group. When specified, the amount of interleukin and chemoattractant secreted in the conditioned medium was determined by enzyme binding immunosorbent assay (ELISA) test kit according to the manufacturer's instructions (R&D Systems). The reflectance of the three replicate samples was read using a SpectraMax Paradigm Plate Reader (Molecular Devices). All raw data were normalized to the PBS control group and the results were expressed as relative secretion of interleukins from three independent experiments.

1.171.17 人類白血病細胞之異種移植及體內化療藥物治療Xenograft of human leukemia cells and chemotherapy in vivo

將購自國家實驗動物中心(台灣)的6至8週大無胸腺裸鼠飬養於長庚紀念醫院無病原體設施(協議編號2014092305)。針對骨髓肉瘤模式,小鼠每隻皮下接種5×106 個U937穩定細胞,其溶於50%基質膠(Corning),接著在接種後第6、第8、及第11天腹腔注射投予PBS或阿糖胞苷(Ara-C,50 mg/kg)。每週二次記錄腫瘤尺寸,計算式為寬度2 × 長度 × 0.52 (34)。針對原位白血病模式,經由外科手術,通過下腔靜脈(IVC)將小鼠以每隻注射1.5×105 個U937穩定細胞,接著在移植後第5天,進行5天每日投予相同治療。小鼠在第60天犧牲,並以股骨BM細胞進行流式細胞術分析。Six to eight-week-old athymic nude mice purchased from the National Laboratory Animal Center (Taiwan) were raised at the Chang Gung Memorial Hospital's pathogen-free facility (Agreement No. 2014092305). For the myeloma model, mice were subcutaneously inoculated with 5×10 6 U937 stable cells, which were dissolved in 50% Matrigel (Corning), followed by intraperitoneal injection of PBS on days 6, 8, and 11 after inoculation. Or cytarabine (Ara-C, 50 mg/kg). The tumor size was recorded twice a week, and the calculation was 2 × length × 0.52 (34). For the in situ leukemia model, mice were surgically injected with 1.5×10 5 U937 stable cells per infusion via the inferior vena cava (IVC), followed by 5 days daily for the same treatment on the 5th day after transplantation. . Mice were sacrificed on day 60 and analyzed by flow cytometry with femoral BM cells.

1.181.18 統計分析Statistical Analysis

所有數據皆以三個獨立實驗的平均值±標準差表示。統計顯著性係以獨立樣本之t檢定表示,如*P 0.05、**P 0.01、及***P 0.001,除非另有指明。針對免疫細胞化學染色,變項間之相關性係以Spearman等級相關性評估。Mann–WhitneyU 檢定用於分析AML病患中TIFA表現之差異。從診斷首日起即測量整體存活率(OS),直到任何原因之死亡,並從完全緩解(CR)時計算無病存活率(DFS)直到任何原因之復發、死亡、或研究結束。Kaplan-Meier估計係用於繪製存活曲線,並以對數等級檢定測試組間差異。利用Cox比例風險廻歸模型估計危險比與95%信賴區間(CI),以確定多變量分析中與OS和DFS相關之獨立危險因子。雙側P值<0.05視為具有統計上顯著性。All data are expressed as the mean ± standard deviation of three independent experiments. Statistical significance is expressed as a t-test of independent samples, such as *P < 0.05, **P < 0.01, and ***P < 0.001 unless otherwise indicated. For immunocytochemical staining, the correlation between variables was assessed by Spearman rank correlation. The Mann–Whitney U assay was used to analyze differences in TIFA performance in AML patients. Overall survival (OS) was measured from the first day of diagnosis until death for any cause, and disease-free survival (DFS) was calculated from complete remission (CR) until recurrence, death, or end of study for any reason. Kaplan-Meier estimates were used to plot survival curves and test the differences between groups by logarithmic scale. Risk ratios and 95% confidence interval (CI) were estimated using the Cox proportional hazard model to determine independent risk factors associated with OS and DFS in multivariate analysis. Bilateral P values <0.05 were considered statistically significant.

2.2. 結果result

2.1 TIFA2.1 TIFA 參與奧洛拉Participate in Alora AA 激酶依賴性Kinase dependence NF-κBNF-κB 傳訊Communication

發明人先前提出,TIFA在蘇胺酸9的磷酸化作用可涉及Ser/Thr激酶在PI3K/AKT的傳訊途徑(20)。欲確定職司TIFA之Thr9磷酸化作用最直接的激酶,發明人經由先前建立的方法篩選激酶抑制劑(20,23),並發現到,奧洛拉A抑制劑能最有效對抗體外磷酸化作用,其係利用TNF-α處理293T細胞裂解液產生。發明人進一步驗證,奧洛拉A為TIFA之Thr9磷酸化作用所需,其係基於三實驗:首先,以奧洛拉A特異性siRNA及二不同奧洛拉A抑制劑處理的細胞裂解液皆顯示TIFA Thr9磷酸化作用能力減弱,其類似於未經磷酸化之T9A突變體的結果(圖1A,第5-7行)。其次,免疫螢光染色顯示,以TNF-α處理時,內源性TIFA斑點(20)與活化型奧洛拉A (磷酸化-Thr288)共同存在(數據未顯示)。再者,免疫沈澱法實驗顯示奧洛拉A與TIFA間之直接交互作用,其在TNF-α刺激時加強(圖1B)。The inventors previously suggested that phosphorylation of TIFA in threonine 9 may involve the signaling pathway of Ser/Thr kinase in PI3K/AKT (20). To determine the most direct kinase for Thr9 phosphorylation by TIFA, the inventors screened for kinase inhibitors (20, 23) via previously established methods and found that Alorora A inhibitors are most effective against in vitro phosphorylation. It is produced by treating 293T cell lysate with TNF-α. The inventors further verified that Aurora A is required for the phosphorylation of Thr9 of TIFA, which is based on three experiments: First, cell lysates treated with aolola A-specific siRNA and two different olora A inhibitors The ability of TIFA Thr9 phosphorylation was shown to be diminished, similar to the results of the unphosphorylated T9A mutant (Fig. 1A, lines 5-7). Second, immunofluorescence staining showed that endogenous TIFA spots (20) coexisted with activated aolola A (phosphorylated-Thr288) when treated with TNF-[alpha] (data not shown). Furthermore, immunoprecipitation experiments showed a direct interaction between Alora A and TIFA, which was enhanced by TNF-α stimulation (Fig. 1B).

據報告,奧洛拉A調節NF-κB傳訊(17),且奧洛拉A表現增加與胃癌的TNF-α、NF-κB、慢性發炎程度提昇相符(35)。發明人亦觀察到活化型NF-κB、磷酸化IκK與IκB、及NF-κB驅動之螢光素酶活性程度顯著升高,其響應於奧洛拉A或TNF-α治療的過度表現(圖1C-D,第2行),且此外顯示,此升高在TIFA靜默時消失(第4行)。結果整體顯示,奧洛拉A在NF-κB傳訊調控中的角色需要TIFA。Aurora A has been reported to regulate NF-κB signaling (17), and increased expression of aurora A is consistent with increased TNF-α, NF-κB, and chronic inflammation in gastric cancer (35). The inventors also observed that activated NF-κB, phosphorylated IκK and IκB, and NF-κB-driven luciferase activity were significantly increased in response to excessive expression of aurora A or TNF-α treatment (Fig. 1C-D, line 2), and additionally shows that this rise disappears when TIFA is silent (line 4). The results overall show that the role of Aurora A in the regulation of NF-κB signaling requires TIFA.

2.2 TIFA2.2 TIFA 與奧洛拉Olora AA 、促生存因子、及Survival factor, and AMLAML 之預後不良相關Poor prognosis

奧洛拉A發現可於AML高度表現(18)。由於發明人顯示,TIFA為AML細胞株U937與THP-1中NF-κB活化作用所必需(圖1C-D),發明人進一步探討,在白血病發生過程中,TIFA蛋白量是否與奧洛拉A和NF-κB傳訊因子相關。由於AML (36)的細胞遺傳學群簇異質性及病患血液樣本的有限體積,發明人選擇以TIFA特異性單株抗體進行西方墨點分析(20),並比較源自16例新生AML病患與16位正常個體的新鮮分離的PBMCs。發明人發現,在所有AML衍生的PBMC中,TIFA蛋白量顯著升高,但在正常供體中則保持不變。此外,TIFA升高伴隨著奧洛拉A蛋白、活化型奧洛拉A、磷酸化IκK/IκB、活化型NF-κB、及促存活因子Bcl-2/Bcl-XL 程度的向上調節(圖2A)。在所有PBMCs中,所有測試蛋白量間之成對比較顯示強相關性,代表彼等因子在功能上與AML相關(皮氏相關係數 = 0.862-0.991)。Aurora A was found to be highly representative of AML (18). Since the inventors have shown that TIFA is required for NF-κB activation in A937 cell lines U937 and THP-1 (Fig. 1C-D), the inventors further explored whether the amount of TIFA protein is related to Aurora A during leukemia. Associated with NF-κB signaling factors. Due to the cytogenetic cluster heterogeneity of AML (36) and the limited volume of blood samples from patients, the inventors chose to use Western TI-specific monoclonal antibodies for Western blot analysis (20) and compared 16 neonatal AML diseases. Freshly isolated PBMCs with 16 normal individuals. The inventors found that in all AML-derived PBMCs, the amount of TIFA protein was significantly increased, but remained unchanged in normal donors. In addition, TIFA elevation is accompanied by up-regulation of the extent of Aurora A, activated alora A, phosphorylated IκK/IκB, activated NF-κB, and pro-survival factor Bcl-2/Bcl-X L (Fig. 2A). In all PBMCs, the pairwise comparison of all tested protein levels showed a strong correlation, indicating that these factors are functionally related to AML (Pearl correlation coefficient = 0.862-0.991).

利用來自85例新生AML病患的冷凍保存BM白血病細胞的免疫細胞化學染色,進一步加強由非分級PBMCs觀察到的TIFA蛋白量預後。依據免疫細胞化學結果,將接受常規強化誘發化療的病患(31)分為低(評分0-2,n = 40)與高(評分3-4,n = 45)表現組。具有較高TIFA蛋白量的AML病患似乎具有比彼等較低TIFA量者更高的WBCs與爆發計數。此外,較高TIFA蛋白表現與FAB M4亞型密切相關(P = 0.0315),但與白血病細胞中CD7表現(P = 0.0454)呈負相關。Immunocytochemical staining of cryopreserved BM leukemia cells from 85 newborn AML patients was used to further enhance the prognosis of TIFA protein levels observed by non-fractionated PBMCs. According to the results of immunocytochemistry, patients who received conventional intensive chemotherapy (31) were divided into low (score 0-2, n = 40) and high (score 3-4, n = 45) performance groups. Patients with AML with higher TIFA protein content appear to have higher WBCs and burst counts than those with lower TIFA doses. In addition, higher TIFA protein performance was closely related to FAB M4 subtype (P = 0.0315), but negatively correlated with CD7 expression in leukemia cells (P = 0.0454).

在所有檢查的AML病患中,有54例(63.5%)達到CR。較高TIFA表現與較低反應率相關(CR率,51.1%比上77.5%,P = 0.0139)。在追蹤一中間期57.8個月(範圍為0.3至79.1個月),TIFA表現較高的病患顯示,OS與DFS明顯低於TIFA表現較低者。在非M3亞型、中等風險細胞遺傳學、及正常核型的病患亞群中,差異仍然顯著,但DFS程度較低。在多變異分析中,較高的TIFA表現為OS預後不良的獨立因子,不論年齡、診斷時的WBC計數、細胞遺傳學、及NPM1/FLT3 -ITD (表2)。 表2 OS與DFS之多變異分析(Cox廻歸) 縮寫:RR,相對風險;CI,信賴區間, *統計學上顯著(P < 0.05) 年齡>50相對於年齡£50 (參考體)§ WBC大於50,000/mL對比50,000/mL以下 z NPM1 mut /FLT3-ITD neg 對比其他亞型 較高TIFA對比較低TIFA表現 Y 不利之細胞遺傳學對比其他Of all AML patients examined, 54 (63.5%) achieved CR. Higher TIFA performance was associated with lower response rates (CR rate, 51.1% vs. 77.5%, P = 0.0139). After tracking an intermediate period of 57.8 months (range, 0.3 to 79.1 months), patients with higher TIFA performance showed significantly lower OS and DFS than those with lower TIFA. In subgroups of non-M3 subtypes, moderate risk cytogenetics, and normal karyotypes, the difference was still significant, but the level of DFS was lower. In the multivariate analysis, higher TIFAs were independent of OS prognosis, regardless of age, WBC count at diagnosis, cytogenetics, and NPM1/FLT3 -ITD (Table 2). Table 2 Analysis of multiple mutations between OS and DFS (Cox) Abbreviations: RR, relative risk; CI, confidence interval, * statistically significant (P < 0.05) age > 50 vs. age £50 (reference volume) § WBC greater than 50,000/mL vs. 50,000/mL z NPM1 mut / FLT3-ITD neg compared to other subtypes higher TIFA contrast lower TIFA performance Y unfavorable cytogenetics comparison other

彼等結果共同顯示,TIFA表現不僅與奧洛拉A依賴性NF-κB傳訊有關,還與AML預後不良相關。Together, these results show that TIFA performance is not only associated with Aurora A-dependent NF-κB signaling, but also with poor prognosis for AML.

2.3 TIFA2.3 TIFA 靜默增進對Silent promotion AMLAML 與其他癌症細胞株之化學毒性Chemical toxicity with other cancer cell lines

欲驗證TIFA致腫瘤作用與奧洛拉A傳訊相關性,發明人經由RNA干擾靶向TIFA依賴性傳訊,並以時間依賴性方式經由WST-1存活試驗檢測AML細胞株的增生情況。結果顯示,TIFA靜默可減弱AML細胞株HL-60、KG-1、THP-1、及U937的生長(圖3A),其類似於VX680處理結果(圖3B) (18)。此外,亦可抑制急性淋巴細胞白血病(ALL)細胞株Jurkat與CML細胞株K562兩者之細胞增生,以響應TIFA靜默及VX680處理。To verify the association of TIFA-induced tumorigenesis with Alora A signaling, the inventors targeted TIFA-dependent signaling via RNA interference and tested the proliferation of AML cell lines via the WST-1 survival assay in a time-dependent manner. The results showed that TIFA silencing attenuated the growth of AML cell lines HL-60, KG-1, THP-1, and U937 (Fig. 3A), which is similar to the VX680 treatment result (Fig. 3B) (18). In addition, cell proliferation of both acute lymphocytic leukemia (ALL) cell line Jurkat and CML cell line K562 can also be inhibited in response to TIFA silencing and VX680 treatment.

抑制奧洛拉A激酶可促進白血病化學敏感性,其視為抗癌策略(14,37)。欲測試靶向TIFA是否還能緩解血液惡性腫瘤的侵襲性與化學抗性,例如抑制奧洛拉A,發明人探討在TIFA靜默下各處理時的白血病細胞存活率。基於WST-1的存活率測試顯示,針對三個傳統AML化療藥物,依托泊苷、伊達比星、及阿糖胞苷的化學治療,所有四個受測AML細胞株IC50減少約50%,其類似於VX680的效果(圖3C)。奧洛拉A之靜默、非典型藥物治療、及ALL與CML細胞株亦得到類似結果。Inhibition of aolala A kinase promotes chemosensitivity in leukemia and is considered an anti-cancer strategy (14, 37). To test whether targeting TIFA can also alleviate the invasiveness and chemical resistance of hematological malignancies, such as inhibition of aolola A, the inventors investigated the survival rate of leukemia cells at each treatment under TIFA silence. The WST-1 based survival test showed that IC50 for all four AML cell lines tested was reduced by approximately 50% for the chemotherapy of three traditional AML chemotherapeutic drugs, etoposide, idarubicin, and cytarabine. Similar to the effect of the VX680 (Figure 3C). Similar results were obtained with silent, atypical drug therapy, and ALL and CML cell lines from Aurora A.

發明人接著以新鮮分離的AML PBMCs測試TIFA抑制作用之效果。除了生長遲緩(圖4A,圖4B右側為計算結果),從TIFA消耗的AML PBMCs中可以看到,升高的NF-κB傳訊因子具有顯著逆轉,即使是在奧洛拉A激酶過度表現與活化(圖4C)。有趣的是,TIFA靜默對正常PBMCs存活率的影響似乎比處理VX680的效果低,其與AML對應物中可比擬的化學毒性相反(比較圖4B中右側與左側部分),顯示靶向TIFA對非白血病細胞的細胞毒性可能較小。更重要的是,靜默TIFA可持續促進病患衍生性PBMCs的化學敏感性,其類似於以VX680抑制奧洛拉A (圖4D),顯示TIFA為白血病化學抗性所需,其類似於奧洛拉A (38)。彼等促進之化學敏感性最可能係因TIFA靜默時細胞凋亡增強(圖4E)與NF-κB傳訊因子向下調節(圖4C)所引起。發明人的研究結果顯示,TIFA為維持白血病細胞生長及化學抗性所需,且TIFA可作為潛在的治療標靶。The inventors then tested the effect of TIFA inhibition with freshly isolated AML PBMCs. In addition to growth retardation (Figure 4A, right on the right side of Figure 4B), it can be seen from the AML PBMCs consumed by TIFA that elevated NF-κB signaling factors have a significant reversal, even in the presence and activation of Apolla A kinase. (Fig. 4C). Interestingly, the effect of TIFA silencing on normal PBMCs survival appears to be less effective than treatment of VX680, which is comparable to comparable chemical toxicity in AML counterparts (compare the right and left portions of Figure 4B), showing targeted TIFA versus The cytotoxicity of leukemia cells may be small. More importantly, silent TIFAs continue to promote the chemosensitivity of patient-derived PBMCs, which is similar to inhibition of aolola A by VX680 (Fig. 4D), showing that TIFA is required for leukemia chemoresistance, similar to Oro Pull A (38). The chemical sensitivities promoted by them are most likely due to increased apoptosis in TIFA silence (Fig. 4E) and downregulation of NF-κB signaling factors (Fig. 4C). The inventors' research shows that TIFA is required to maintain leukemia cell growth and chemical resistance, and TIFA can be used as a potential therapeutic target.

其他癌症細胞株亦被發現TIFA抑制作用可促進抗癌治療的細胞毒性效果。於存在或不存在TIFA靜默之情況下,以索拉非尼、順鉑、依托泊苷、或X光放射線照射各癌症細胞株,並進行WST-1試驗。細胞的第4天細胞毒性以無TIFA靜默處理組進行標準化並呈現。表3摘錄了不同癌症細胞株之抗癌治療下TIFA靜默的細胞毒性倍數變化。 * 細胞毒性利用(1-存活%)計算,並利用(TIFA靜默之細胞毒性/非靜默之細胞毒性)確定細胞毒性的倍數變化。Other cancer cell lines have also been found to inhibit the cytotoxic effects of anti-cancer treatment by TIFA inhibition. Each cancer cell line was irradiated with sorafenib, cisplatin, etoposide, or X-ray radiation in the presence or absence of TIFA silence, and the WST-1 test was performed. Day 4 cytotoxicity of the cells was normalized and presented in the no TIFA silent treatment group. Table 3 summarizes the cytotoxic fold changes of TIFA silenced by anticancer treatment of different cancer cell lines. * Cytotoxicity (1-% survival) was calculated and the fold change in cytotoxicity was determined using (TIFA silent cytotoxicity/non-silent cytotoxicity).

2.42.4 經由顯性負Dominant negative (DN)(DN) 抑制作用靶向Inhibition targeting TIFATIFA

欲探討靶向TIFA的分子機制,發明人在表型上利用野生型TIFA與T9A突變體拯救TIFA耗竭之AML細胞株,其係經由一靜默互補策略(27)。在所有測試的AML細胞株中,表現野生型TIFA而非T9A突變體時,可有效緩解靜默依賴性化學敏感性(圖5A),顯示pThr9定向TIFA寡聚合作用為AML化學抗性所需之關鍵步驟。To explore the molecular mechanism of targeting TIFAs, the inventors used phenotypes to rescue TIFA depleted AML cell lines using wild-type TIFA and T9A mutants via a silent complementation strategy (27). In all AML cell lines tested, wild-type TIFAs, but not T9A mutants, were shown to be effective in relieving silencing-dependent chemosensitivity (Fig. 5A), showing that pThr9-directed TIFA oligomerization is critical for AML chemoresistance. step.

發明人接著試圖經由在AML細胞中異位表現TIFA的DN(dominant negative)片段以破壞TIFA寡聚合作用。發明人設計用於經反轉錄病毒轉導而精細定位AML細胞中分子靶向TIFA的最小有效區域(圖5B)。經轉導之U937細胞裂解液的免疫沉澱法顯示,片段F1F2與F2F3,兩者含有FHA二聚合核心並分別具有額外的C端與N端延伸,能捕捉內源性TIFA (圖5C),顯示二片段能干擾內源性TIFA的自身結合(20)。其結果為,U937細胞之F1F2或F2F3片段能減弱TNF-α-依賴性NF-κB活化作用與NF-κB傳訊因子提升(圖5D-E)。更重要的是,該二DN片段亦顯著促進AML細胞株的化學敏感性,其中IC50降低50%以上(圖5F)。這些觀察結果共同表明,TIFA在AML中的分子靶向治療潛力。The inventors then attempted to disrupt TIFA oligomerization by ectopically expressing a DN (dominant negative) fragment of TIFA in AML cells. The inventors designed a minimally efficient region for the targeted localization of TIFAs in AML cells by retroviral transduction (Fig. 5B). The immunoprecipitation of the transduced U937 cell lysate showed that the fragments F1F2 and F2F3, both containing FHA dimerization cores with additional C-terminal and N-terminal extensions, were able to capture endogenous TIFAs (Fig. 5C), showing The two fragments can interfere with the self-binding of endogenous TIFAs (20). As a result, the F1F2 or F2F3 fragment of U937 cells attenuated TNF-α-dependent NF-κB activation and NF-κB signaling factor elevation (Fig. 5D-E). More importantly, the di-DN fragment also significantly promoted the chemosensitivity of AML cell lines with IC50 reduced by more than 50% (Fig. 5F). Together, these observations indicate the potential of molecularly targeted therapy of TIFAs in AML.

2.52.5 靶向Targeting TIFATIFA 增強白血病骨髓母細胞之清除率Enhance the clearance rate of leukemia myeloid cells

細胞介素異常分泌有助於白血病的發病(39),且視為AML復發的預後指徵(39,40)。發明人探討TIFA的分子靶向是否可擾亂NF-κB依賴性白血病細胞介素分泌,且達到更好的治療功效。發明人進行細胞介素抗體陣列,以分析U937細胞分泌的細胞介素。結果顯示,處理阿糖胞苷可促進TNF-α、CXCL-1、及IL-8分泌,但抑制IL-6,而TIFA DN片段之表現明顯產生相反效果(圖6A,詳細的ELISA分析如圖6B)。關於處理阿糖胞苷促進TNF-α分泌方面,補充TNF-α能增進U937細胞存活率以響應阿糖胞苷處理效果,而TIFA DN片段之表現顯著拮抗TNF-α的作用(圖6C)。以依那西普(Enbrel,TNF-α抑制劑)、硼替佐米(Velcade,NF-κB抑制劑)、或ABT-263 (Navitoclax,BCL-2抑制劑)抑制TNF-α與下游NF-κB存活傳訊,可增強阿糖胞苷處理之U937細胞的細胞毒性,其類似TIFA DN片段之作用(圖6D)。這些結果顯示,TIFA DN片段在治療上可有效阻斷發炎性細胞介素分泌,導致AML中NF-κB存活因子去活化。Abnormal secretion of interleukins contributes to the pathogenesis of leukemia (39) and is considered a prognostic indicator of AML recurrence (39, 40). The inventors investigated whether molecular targeting of TIFAs can disrupt NF-κB-dependent leukemia interleukin secretion and achieve better therapeutic efficacy. The inventors performed an array of interleukin antibodies to analyze the interleukin secreted by U937 cells. The results showed that treatment with cytarabine promoted the secretion of TNF-α, CXCL-1, and IL-8, but inhibited IL-6, while the expression of TIFA DN fragment showed the opposite effect (Fig. 6A, detailed ELISA analysis 6B). Regarding the treatment of cytarabine to promote TNF-α secretion, supplementation with TNF-α enhanced U937 cell survival in response to cytarabine treatment, while TIFA DN fragment significantly antagonized TNF-α (Fig. 6C). Inhibition of TNF-α and downstream NF-κB by enalapril (Enbrel, TNF-α inhibitor), bortezomib (Velcade, NF-κB inhibitor), or ABT-263 (Navitoclax, BCL-2 inhibitor) Survival messaging enhances the cytotoxicity of cytarabine-treated U937 cells, which is similar to the effect of the TIFA DN fragment (Fig. 6D). These results show that the TIFA DN fragment is therapeutically effective in blocking inflammatory interleukin secretion, resulting in the deactivation of NF-κB survival factor in AML.

因此,發明人評估TIFA DN片段的體內治療潛力。儘管與NOD-SCID或NSG/NOG小鼠相比,移植的造血組織證實難以在裸鼠上繁殖(41),但發明人選擇此一較困難的模式來驗證靶向TIFA的效果。此係因增生性骨髓先驅細胞所需的完整發炎性細胞介素可模擬微環境以支持化學抗性(42)。異位異種移植模式顯示,除了阿糖胞苷治療之外,TIFA DN片段的反轉錄病毒轉導,相較於單獨的阿糖胞苷治療,明顯預防骨髓肉瘤擴展(圖6E)。此預防體內AML擴增,亦可由TNF-α、NF-κB、或BCL-2抑制作用觀察到(圖6F),支持了利用靶向TIFA而增進之化學毒性,可能係因阻斷TNF-α依賴性NF-κB存活途徑。此外,發明人亦經由IVC將U937穩定細胞直接注射裸鼠,建立原位異種移植模式,而毋須以化學或亞致死放射線照射進行免疫抑制。由受體小鼠BM細胞之流式細胞術分析顯示,靶向TIFA顯著促進移植之人類CD45+ CD33+ 骨髓母細胞在阿糖胞苷處理後的清除率(圖6G)。受限的白血病骨髓母細胞與波動的細胞介素共同顯示,TIFA之分子靶向能擾亂NF-κB與TNF-α間之正回饋,其為AML進展所需(43)。Therefore, the inventors assessed the in vivo therapeutic potential of TIFA DN fragments. Although transplanted hematopoietic tissue proved to be difficult to propagate on nude mice compared to NOD-SCID or NSG/NOG mice (41), the inventors chose this more difficult mode to verify the effect of targeting TIFAs. This is a complete inflammatory cytokine required by proliferating bone marrow precursor cells to mimic the microenvironment to support chemical resistance (42). The ectopic xenograft model showed that, in addition to cytarabine treatment, retroviral transduction of TIFA DN fragments significantly prevented myelosarcoma expansion compared to cytarabine alone (Fig. 6E). This prevention of AML amplification in vivo can also be observed by TNF-α, NF-κB, or BCL-2 inhibition (Fig. 6F), supporting the chemical toxicity enhanced by targeting TIFA, possibly due to blocking TNF-α Dependent NF-κB survival pathway. In addition, the inventors also directly injected U937 stable cells into nude mice via IVC to establish an in situ xenograft mode without immunosuppression by chemical or sublethal radiation. Flow cytometric analysis of the recipient mouse BM cells showed that targeting TIFA significantly promoted clearance of transplanted human CD45 + CD33 + myelocytes after cytarabine treatment (Fig. 6G). Constrained leukemia myeloid cells together with fluctuating interleukins show that molecular targeting of TIFAs can disrupt positive feedback between NF-κB and TNF-α, which is required for AML progression (43).

TIFA為NF-κB傳訊途徑中相對新穎的成員。發明人的早期研究揭示TIFA寡聚合作用在TNF-α刺激下促進NF-κB傳訊途徑的關鍵角色,其機制上係經由TIFA二聚體的磷酸化Thr9與FHA結構域間之分子間結合作用(20)。最近的一項研究表明,此TIFA之磷酸化依賴性寡聚合作用亦可由革蘭氏陰性細菌衍生之單醣庚醣-1,7-二磷酸鹽(HBP)驅動,導致先天免疫的活化(23)。在另一文獻中(44),發明人進一步顯示,TIFA經由組裝NLRP3發炎體而介導先天免疫反應。在本研究中,發明人發現TIFA為AML中奧洛拉A傳訊軸與NF-κB調節之促生存因子間之功能聯結。此外,發明人利用顯示TIFA抑制作用干擾白血病細胞介素分泌,證實TIFA靶向在治療AML上的治療潛力,其明顯增進AML細胞之化學毒性,並於異種移植模式中增強白血病骨髓母細胞之清除率。TIFA is a relatively novel member of the NF-κB signaling pathway. Early studies by the inventors revealed that TIFA oligomerization plays a key role in promoting the NF-κB signaling pathway under TNF-α stimulation, and the mechanism is through the intermolecular binding between the phosphorylated Thr9 and FHA domains of TIFA dimers ( 20). A recent study showed that the phosphorylation-dependent oligomerization of this TIFA can also be driven by the monosaccharide heptose-1,7-diphosphate (HBP) derived from Gram-negative bacteria, resulting in the activation of innate immunity (23 ). In another document (44), the inventors further show that TIFAs mediate innate immune responses via assembly of NLRP3 inflammatory bodies. In the present study, the inventors found that TIFA is a functional link between the Aurora A signaling axis in AML and the pro-survival factor of NF-κB regulation. In addition, the inventors demonstrated that TIFA inhibition interferes with leukemic interleukin secretion, confirming the therapeutic potential of TIFA targeting in the treatment of AML, which significantly enhances the chemical toxicity of AML cells and enhances the clearance of leukemia myeloid cells in a xenograft mode. rate.

發明人藉由西方墨點分析新鮮收集之病患樣本,以直接評估TIFA蛋白量,而非常規基於即時PCR的預後因子轉錄程度檢測。發明人觀察到,相較於正常供體,AML病患之TIFA蛋白量升高,類似其激酶奧洛拉A,並證實TIFA與NF-κB驅動之促存活因子間之緊密相關性。利用冷凍保存之病患骨髓細胞的免疫細胞化學染色,發明人亦推測,AML病患在BM中TIFA蛋白量升高係因OS預後不良之獨立因子,且與年齡、WBC計數、核型、及其他遺傳標記無關。彼等觀察結果證實,具有較高TIFA蛋白量之AML病患,化療難以治癒,且CR率較低及OS較差。基於彼等發現,BM中較高TIFA蛋白量亦可作為預測AML病患臨床結果的新穎生物標記。TIFA靜默或顯性負TIFA片段之表現皆可減少NF-κB活化,導致白血病細胞增生停滯且增進化學毒性。The inventors analyzed the freshly collected patient samples by western blots to directly assess the amount of TIFA protein, rather than the conventional real-time PCR-based prognostic factor transcription level detection. The inventors observed that the amount of TIFA protein in AML patients was elevated compared to normal donors, similar to its kinase olola A, and confirmed a close correlation between TIFA and NF-κB-driven pro-survival factors. Using immunocytochemical staining of bone marrow cells from cryopreserved patients, the inventors also speculated that the increase in TIFA protein in BM patients was an independent factor for poor prognosis of OS, and with age, WBC count, karyotype, and Other genetic markers are irrelevant. Their observations confirmed that patients with AML with higher TIFA protein content were difficult to cure with chemotherapy, and the CR rate was lower and the OS was poorer. Based on their findings, higher TIFA protein levels in BM can also serve as novel biomarkers for predicting clinical outcomes in AML patients. The expression of TIFA silent or dominant negative TIFA fragments can reduce NF-κB activation, leading to leukemia cell proliferation arrest and increased chemical toxicity.

DN蛋白的異位表現可拮抗信號傳導,並在癌症治療中引發治療潛力。具體而言,轉染IκB超抑制因子,其為DN IκB突變體且最終抑制NF-κB活性,顯示可選擇性增加對長春新鹼治療的ALL敏感性,其係經由NF-κB調節之細胞凋亡(45)。發明人同樣觀察到,在TIFA之二DN片段的異位表現時,白血病細胞中化學敏感性增強。發明人認為,最小DN片段必須包括FHA二聚合核心加上N端Thr9模體以破壞內源性TIFA寡聚合作用或C端TRAF6/TRAF2交互作用模體以中斷信號傳導(20,22)。有趣的是,轉錄抑制(經由TIFA siRNA;圖3與圖4)及分子抑制(經由DN片段;圖5與圖6)兩者對TIFA顯示出幾乎相同的靶向功效,顯示TIFA在彼等細胞過程中不可替代且非冗餘的角色。Ectopic manifestations of DN proteins can antagonize signaling and trigger therapeutic potential in cancer therapy. Specifically, IκB super-inhibitor, which is a DN IκB mutant and ultimately inhibits NF-κB activity, has been shown to selectively increase ALL sensitivity to vincristine treatment, which is regulated by NF-κB. Dead (45). The inventors also observed that the chemosensitivity of leukemia cells is enhanced in the ectopic presentation of the DN fragment of TIFA. The inventors believe that the minimal DN fragment must include the FHA dimerization core plus the N-terminal Thr9 motif to disrupt endogenous TIFA oligomerization or C-terminal TRAF6/TRAF2 interaction motifs to disrupt signaling (20, 22). Interestingly, both transcriptional repression (via TIFA siRNA; Figure 3 and Figure 4) and molecular inhibition (via DN fragment; Figure 5 and Figure 6) showed almost identical targeting efficacy for TIFA, showing TIFA in their cells. An irreplaceable and non-redundant role in the process.

發明人使用AML、ALL、及CML細胞株等結果一致證實,靶向TIFA在骨髓與白血病淋巴細胞譜系中的功效,顯示TIFA驅動的NF-κB傳訊軸可在白血病發生過程中扮演重要角色。此外,最近針對促進白血病發生之白血病起始細胞(LICs),亦描述了NF-κB與TNF-α間之正回饋(43)。LIC富集之白血病BM細胞呈現組成性活化之NF-κB傳訊,其視為AML緩解後復發之原因(43)。發明人之圖6C結果顯示,處理TNF-α確實緩解阿糖胞苷對未分化之U937單核細胞的細胞毒性,而TIFA之分子抑制經由擾動NF-κB依賴性促存活傳訊而阻斷該作用(圖5D-E)。由於殘存的先天免疫,白血病細胞顯示難以在無胸腺裸鼠中繁殖(41)。然而,發明人觀察到彼等未分化單核細胞在小鼠股骨中的歸巢由於處理阿糖胞苷而抑制(圖6E),且TIFA抑制顯著促進該作用。儘管此異種移植模式可能不表示LICs之真正幹性,但其可能意味著在化學藥物治療下未分化之白血病細胞的維持需要TIFA,且經由靶向TIFA,可削弱LICs的長期擴增及自我更新能力。The inventors have consistently confirmed the efficacy of targeting TIFA in the bone marrow and leukemia lymphocyte lineage using AML, ALL, and CML cell lines, indicating that the TIFA-driven NF-κB signaling axis plays an important role in the development of leukemia. In addition, positive feedback between NF-κB and TNF-α has also been described recently for leukemic initiation cells (LICs) that promote leukemia (43). LIC-enriched leukemia BM cells exhibit constitutively activated NF-κB signaling, which is considered to be the cause of recurrence after AML remission (43). The inventors' Figure 6C results show that treatment of TNF-α does attenuate the cytotoxicity of cytarabine on undifferentiated U937 monocytes, whereas molecular inhibition of TIFA blocks this effect by perturbing NF-κB-dependent survival signaling. (Fig. 5D-E). Leukemia cells have been shown to be difficult to propagate in athymic nude mice due to residual innate immunity (41). However, the inventors observed that the homing of their undifferentiated monocytes in the mouse femur was inhibited by treatment with cytarabine (Fig. 6E), and TIFA inhibition significantly promoted this effect. Although this xenograft mode may not indicate the true dryness of LICs, it may mean that TIFA is required for the maintenance of undifferentiated leukemia cells under chemical drug therapy, and long-term expansion and self-renewal of LICs can be attenuated by targeting TIFAs. ability.

先天免疫與發炎性傳訊的去調節(deregulation)可導致骨髓增生異常症候群(MDS),其為群簇性血液惡性腫瘤,可過度繁衍BM且進展為AML (46)。組成型NF-κB傳訊可能會致病性轉活化發炎性細胞介素與促存活因子,導致MDS BM先驅細胞之失調擴增,而於正常與MDS BM先驅細胞抑制NF-κB活性可誘發細胞凋亡(47)。因此,Bcl-2與Bcl-XL 可視為骨髓惡性腫瘤(包括AML)的化學抗性指標(9,12,48,49)。由於TIFA調節NF-κB驅動之先天免疫(23),發明人於AML中觀察到的TIFA於白血病發生之角色,較可能係經由NF-κB依賴性抗細胞凋亡/促存活途徑。發明人使用白血病細胞株與AML病患衍生之PBMCs的結果一致顯示,TIFA為化療時細胞存活所必需。靜默病患PBMCs之TIFA明顯阻斷NF-κB依賴性促存活因子,儘管過度表現奧洛拉A (圖4C)且處理化療藥物,顯示發明人在圖3C、圖4D、圖5A、及圖5F中觀察到的化學抗性能力喪失係因擾動的抗細胞凋亡/促存活因子Bcl-2與Bcl-XLDeregulation of innate immunity and inflammatory mediation can lead to myelodysplastic syndrome (MDS), a cluster of hematological malignancies that overexpress BM and progress to AML (46). The formation of NF-κB signaling may cause pathogenic activation of inflammatory mediators and pro-survival factors, leading to dysregulation of MDS BM precursor cells, whereas inhibition of NF-κB activity by normal and MDS BM precursor cells may induce cell apoptosis. Dead (47). Therefore, Bcl-2 and Bcl-X L can be regarded as indicators of chemical resistance of bone marrow malignancies (including AML) (9, 12, 48, 49). Since TIFA regulates NF-κB-driven innate immunity (23), the role of TIFA in leukemia observed by the inventors in AML is more likely to be via the NF-κB-dependent anti-apoptotic/pro-survival pathway. The inventors used the results of leukemia cell lines consistent with PBMCs derived from AML patients to show that TIFA is required for cell survival during chemotherapy. TIFA of PBMCs in silent patients significantly blocked NF-κB-dependent pro-survival factors, although over-expressing Olola A (Fig. 4C) and treating chemotherapy drugs, the inventors showed in Figure 3C, Figure 4D, Figure 5A, and Figure 5F. The observed loss of chemoresistance was due to disturbed anti-apoptotic/promoting factors Bcl-2 and Bcl-X L .

腫瘤微環境係由許多發炎性因子(包括細胞介素與趨化介素)構成的前發炎性反應環境,且此促腫瘤發炎反應基本上使得癌症發展(50)。越來越多靶向促發炎性TNF超家族成員的抑制劑顯示治療上有效(51)。鑑於TIFA在TNF-α與NF-κB間之傳訊鏈上的重要角色,其抑制作用應能減弱由NF-κB轉錄調節之發炎性因子。發明人觀察到,在分子靶向TIFA時減弱CXCL-1與IL-8分泌物,與延遲白血病細胞生長及降低化學抗性相關聯(圖6A-B),其支持先前建議的兩發炎性因子的致瘤功能(52,53)。The tumor microenvironment is a pre-inflammatory response environment composed of a number of inflammatory factors, including interleukins and chemokines, and this tumor-promoting response essentially contributes to cancer development (50). An increasing number of inhibitors targeting members of the pro-inflammatory TNF superfamily have been shown to be therapeutically effective (51). In view of the important role of TIFA in the signaling chain between TNF-α and NF-κB, its inhibition should attenuate the inflammatory factors regulated by NF-κB transcription. The inventors observed that attenuating CXCL-1 and IL-8 secretions when molecularly targeting TIFAs is associated with delaying leukemia cell growth and reducing chemoresistance (Fig. 6A-B), supporting the two previously suggested inflammatory factors. The tumorigenic function (52, 53).

現已確定,奧洛拉A可於AML中過度表現(16,18,54),且其抑制作用視為治療數種造血性惡性腫瘤之標靶治療(55-57)。儘管許多類型之實體瘤常觀察到奧洛拉A之基因擴增,導致過度表現與腫瘤進展(58),但是奧洛拉A於AML中是否經由此方式向上調節仍未知。發明人經由功能上需要奧洛拉A激酶活性之位點特異性磷酸化作用,確定TIFA聯結至TNF-α依賴性NF-κB存活信號,其從而維持正回饋環以驅動發炎性反應並支持白血病細胞之化學抗性(40)。發明人在以TNF-α、NF-κB、BCL-2、及奧洛拉A抑制劑治療下,觀察到AML細胞的化學毒性增強,其類似於TIFA的轉錄抑制與分子靶向(圖3、4、5、6C)。藉由體內的阿糖胞苷與TNF-α、NF-κB、或BCL-2之抑制劑結合治療,進一步強化轉譯功效(圖6F)。It has been determined that Aurora A can be overexpressed in AML (16, 18, 54) and its inhibition is considered to be the target treatment for several hematopoietic malignancies (55-57). Although many types of solid tumors often observe gene amplification of Alora A, leading to overexpression and tumor progression (58), it is still unknown whether or not Alora A is upregulated in this way in AML. The inventors determined that TIFAs bind to TNF-α-dependent NF-κB survival signals via functionally required site-specific phosphorylation of aolala A kinase activity, thereby maintaining a positive feedback loop to drive inflammatory responses and support leukemia Chemical resistance of cells (40). The inventors observed enhanced chemical toxicity of AML cells treated with TNF-α, NF-κB, BCL-2, and aolola A inhibitors, which are similar to TIFA transcriptional inhibition and molecular targeting (Fig. 3, 4, 5, 6C). The translational efficacy was further enhanced by the combination of cytarabine in vivo with inhibitors of TNF-α, NF-κB, or BCL-2 (Fig. 6F).

總體而言,發明人的研究結果證實TIFA在支持奧洛拉A依賴性NF-κB存活及發炎性途徑中的功能角色,可作為AML中白血病細胞生長及化學抗性的分子基礎。由於使用蒽環類藥物或阿糖胞苷的初始治療方法在幾十年內維持不變,且由於藥物抗藥性,CR仍然不足,未來以TIFA靶向策略的AML治療可提供降低化學抗性發生率的治療優勢,提高常規化學療法的功效,並改進長期臨床療效。 序列資訊 表4 Overall, the inventors' findings confirm the functional role of TIFA in supporting Alora A-dependent NF-κB survival and inflammatory pathways, and serve as a molecular basis for leukemia cell growth and chemoresistance in AML. Since the initial treatment with anthracyclines or cytarabine remains unchanged for decades, and due to drug resistance, CR is still insufficient, and future AML treatment with TIFA targeting strategy can provide reduced chemical resistance. The therapeutic advantage of the rate increases the efficacy of conventional chemotherapy and improves long-term clinical outcomes. Sequence information table 4

no

當結合附圖閱讀時,將更好地理解本發明之上述摘錄及下列詳細描述。欲說明本發明,附圖顯示目前較佳之具體實施例。然而,應理解到,本發明未侷限於所示之精確安排與手段。The above summary of the present invention, as well as the following detailed description, To illustrate the invention, the drawings show the preferred embodiments of the present invention. However, it should be understood that the invention is not limited to the precise arrangements and arrangements shown.

下圖中:The figure below:

圖1A、1B、1C、及1D顯示TIFA為奧洛拉A依賴性NF-κB傳訊所必需。(圖1A) TIFA磷酸化作用之體外激酶試驗。上側,以Flag標記之奧洛拉A (Flag-奧洛拉A)或奧洛拉A siRNA (siAurora A)轉染,或以奧洛拉A抑制劑(VX-680與MK-5108)處理之293T細胞裂解液的蛋白質西方墨點分析。奧洛拉A pT288代表活化型激酶(18)。左側,利用重組型TIFA野生型(WT)與不可磷酸化之T9A突變體蛋白之體外激酶試驗,其係於[γ-32 P]ATP存在下以奧洛拉A抑制劑與TNF-α處理的293T細胞裂解液培養。WCE,全細胞萃取物;Si,奧洛拉A siRNA;VX,VX680;MK,MK5108;PPTase,鹼性去磷酸酶。右側,三個獨立實驗的量化及統計分析。(圖1B) 上側,293T細胞裂解液之奧洛拉A的免疫沉澱法,其係於不同時間之TNF-α刺激下轉染HA-標記之TIFA。下側,用於上側之全部裂解液的西方墨點分析。S,上清液;P,沈澱物。(圖1C) 左側,293T細胞裂解液之西方墨點分析,其係以Flag-標籤之奧洛拉A與TIFA siRNA轉染。右側,如同左側,除了檢驗以TIFA siRNA轉染並以10 ng/mL TNF-α處理30 min的U937細胞以外。(圖1D)如同(圖1C),除了處理之細胞額外以pNF-κB-Luc質體轉染以外,並利用螢光素酶報導基因試驗分析NF-κB活性。圖示代表以非轉染或非TNF-α刺激之對照組標準化之相對亮度單位(RLU)。Figures 1A, 1B, 1C, and 1D show that TIFA is required for Aurora A-dependent NF-κB signaling. (Fig. 1A) In vitro kinase assay for TIFA phosphorylation. On the upper side, transfected with Flag-labeled Aurora A (Flag-Aola A) or Aurora A siRNA (siAurora A), or treated with Aurora A inhibitor (VX-680 and MK-5108) Protein Western blot analysis of 293T cell lysates. Aurora A pT288 represents an activated kinase (18). On the left, an in vitro kinase assay using recombinant TIFA wild-type (WT) and non-phosphorylated T9A mutant proteins, treated with anolase A inhibitor and TNF-α in the presence of [γ- 32 P]ATP 293T cell lysate culture. WCE, whole cell extract; Si, Aurora A siRNA; VX, VX680; MK, MK5108; PPTase, alkaline dephosphatase. On the right side, quantitative and statistical analysis of three independent experiments. (Fig. 1B) The upper side, immunoprecipitation of olaline A of 293T cell lysate, which was transfected with HA-labeled TIFA under different time TNF-α stimulation. Lower side, Western blot analysis for all lysates on the upper side. S, supernatant; P, precipitate. (Fig. 1C) Western blot analysis of 293T cell lysates on the left side, transfected with Flag-tagged Alora A and TIFA siRNA. Right, as on the left, except for U937 cells transfected with TIFA siRNA and treated with 10 ng/mL TNF-α for 30 min. (Fig. 1D) As in (Fig. 1C), NF-κB activity was analyzed using a luciferase reporter gene assay in addition to transfection of cells treated with pNF-κB-Luc plastids. The representations represent the relative brightness units (RLU) normalized to the control group that were either non-transfected or non-TNF-[alpha] stimulated.

圖2顯示TIFA蛋白之過度表現與AML病患之促存活因子及預後不良有關。正常組與AML PBMCs組中TIFA與促存活因子的代表性蛋白表現(各組n = 16)。將西方墨點分析結果(圖4C)量化,並以相對應之b-肌動蛋白量標準化,而在正常對照組中,各傳訊因子之相對強度係以中間值標準化。水平條帶,中間值。Figure 2 shows that overexpression of TIFA protein is associated with pro-survival factors and poor prognosis in AML patients. Representative protein expression of TIFA and pro-survival factors in the normal group and the AML PBMCs group (n=16 in each group). Western blot analysis results (Fig. 4C) were quantified and normalized to the corresponding amount of b-actin, while in the normal control group, the relative intensities of the various signaling factors were normalized to intermediate values. Horizontal strip, intermediate value.

圖3A、3B、及3C顯示TIFA靜默增進對AML細胞株之化學毒性。(圖3A) 以WST-1試驗檢測四個AML細胞株於TIFA靜默時細胞存活時間過程。圖示代表三個獨立實驗中以第0天標準化之相對細胞存活率。(圖3B)圖示代表(圖3A)實驗與處理VX680之相對應實驗中以第4天之模擬對照組標準化的相對細胞存活率。(圖3C) 用於(圖3A)與(圖3B)之AML細胞株係以WST-1試驗分析化療藥物處理下的細胞存活率。圖示代表經計算之化療藥物IC50。siCon,對照組siRNA;siTIFA,TIFA siRNA。Figures 3A, 3B, and 3C show that TIFA silently enhances chemical toxicity to AML cell lines. (Fig. 3A) The cell survival time course of four AML cell lines at the time of TIFA silencing was examined by the WST-1 assay. The graph represents the relative cell viability normalized on day 0 in three independent experiments. (Fig. 3B) graphical representation of the relative cell viability normalized by the simulated control on day 4 in the corresponding experiment of experiment (Fig. 3A) and treatment of VX680. (Fig. 3C) AML cell lines for (Fig. 3A) and (Fig. 3B) were analyzed for cell viability under chemotherapeutic drug treatment using the WST-1 assay. The figure represents the calculated chemotherapeutic drug IC50. siCon, control siRNA; siTIFA, TIFA siRNA.

圖4A、4B、4C、4D、及4E顯示TIFA靜默增進對AML PBMCs化學毒性。(圖4A) 利用WST-1試驗檢測八個AML PBMCs於TIFA靜默時細胞存活時間過程。圖示代表以第0天標準化之相對細胞存活率。(圖4B) 圖示代表(圖4A)實驗與正常PBMCs之相對應實驗和VX680處理組(各組n = 8)中以第4天之模擬對照組標準化的相對細胞存活率。(圖4C) 8個AML PBMCs於TIFA靜默時及8個正常PBMCs之促存活因子量的西方墨點分析。(圖4D)用於(圖4A)與(圖4B)之AML PBMCs係以WST-1試驗分析化療藥物處理下的細胞存活率。圖示代表經計算之化療藥物IC50。(圖4E) 四個AML PBMCs (AML #9、10、13、及15)係於TIFA靜默處理10 μM依托泊苷(etoposide)、10 nM伊達比星(idarubicin)、或10 μM阿糖胞苷(cytarabine),或處理VX680,並以流式細胞術分析。圖示代表細胞以膜聯蛋白V與碘化丙啶陽性染色的百分比。水平條帶,中間值。siCon,對照組siRNA;siTIFA,TIFA siRNA。Figures 4A, 4B, 4C, 4D, and 4E show that TIFA silently enhances chemical toxicity to AML PBMCs. (Fig. 4A) The WST-1 assay was used to detect the cell survival time of eight AML PBMCs at TIFA silence. The graph represents the relative cell viability normalized on day 0. (Fig. 4B) The graph represents the relative cell viability normalized (Fig. 4A) in the corresponding experiment with normal PBMCs and the VX680 treated group (n=8 in each group) normalized on day 4 of the mock control group. (Fig. 4C) Western blot analysis of 8 AML PBMCs at TIFA silence and 8 normal PBMCs. (Fig. 4D) AML PBMCs for (Fig. 4A) and (Fig. 4B) were analyzed for cell viability under chemotherapeutic drug treatment by WST-1 assay. The figure represents the calculated chemotherapeutic drug IC50. (Fig. 4E) Four AML PBMCs (AML #9, 10, 13, and 15) were treated with TIFA silently treating 10 μM etoposide, 10 nM idarubicin, or 10 μM cytarabine (cytarabine), or treated with VX680, and analyzed by flow cytometry. The graph represents the percentage of cells stained positive for Annexin V and propidium iodide. Horizontal strip, intermediate value. siCon, control siRNA; siTIFA, TIFA siRNA.

圖5A、5B、5C、5D、5E、及5F顯示TIFA之分子標靶抑制TIFA介導之NF-κB活化作用。(圖5A) 圖示代表AML細胞株在TIFA靜默及siRNA-抗性(siR) TIFA野生型(WT)或T9A突變體過度表現下經計算之化療藥物IC50。(圖5B) TIFA顯性負構築體之示意圖。AML細胞株分別以攜帶彼等構築體之假型反轉錄病毒感染,以產生穩定之細胞。2Myc,二連續Myc-標籤。(圖5C) 以抗Myc免疫微珠免疫沉澱及西方墨點法分析(圖5B)所示之穩定表現TIFA片段的U937細胞裂解液。(圖5D) 用於(圖5C)之細胞係額外以pNF-κB-Luc質體轉染,以10 ng/mL TNF-α處理30 min,並利用螢光素酶報導基因試驗分析NF-κB活性。螢光素酶活性係以非TNF-α刺激之對照組標準化。圖示代表三次獨立實驗取得之相對亮度單位(RLU)。(圖5E) 利用西方墨點法分析(圖5D)裂解液中NF-κB傳訊因子的量。(圖5F) 以劑量依賴性方式之化療藥物處理(圖5B)所述之穩定表現TIFA片段的AML細胞株,並利用WST-1試驗分析細胞存活率。圖示代表三次獨立實驗取得之經計算化療藥物IC50値。siCon,對照組siRNA;siTIFA,TIFA siRNA。Figures 5A, 5B, 5C, 5D, 5E, and 5F show that the molecular targets of TIFA inhibit TIFA-mediated NF-κB activation. (FIG. 5A) The graph represents the calculated chemotherapeutic drug IC50 of the AML cell line under TIFA silence and siRNA-resistant (siR) TIFA wild type (WT) or T9A mutant overexpression. (Fig. 5B) Schematic diagram of the TIFA dominant negative structure. AML cell lines are each infected with a pseudotyped retrovirus carrying their constructs to produce stable cells. 2Myc, two consecutive Myc-tags. (Fig. 5C) U937 cell lysate stably expressing the TIFA fragment as shown by anti-Myc immunobead immunoprecipitation and Western blot analysis (Fig. 5B). (Fig. 5D) The cell line used for (Fig. 5C) was additionally transfected with pNF-κB-Luc plastid, treated with 10 ng/mL TNF-α for 30 min, and analyzed for NF-κB by luciferase reporter gene assay. active. Luciferase activity was normalized to a non-TNF-α stimulated control group. The graph represents the relative luminance units (RLU) obtained from three independent experiments. (Fig. 5E) The amount of NF-κB signaling factor in the lysate was analyzed by Western blotting (Fig. 5D). (Fig. 5F) AML cell strains stably expressing TIFA fragments as described in a dose-dependent manner of chemotherapeutic drug treatment (Fig. 5B), and cell viability were analyzed using the WST-1 assay. The figure represents the calculated IC50 化疗 of the calculated chemotherapeutic drug obtained from three independent experiments. siCon, control siRNA; siTIFA, TIFA siRNA.

圖6A、6B、6C、6D、6E、6F、及6G顯示靶向TIFA增強白血病骨髓母細胞的清除率。(圖6A) 利用細胞介素-抗體陣列,分析圖5F中10μM阿糖胞苷處理之U937穩定細胞所收集的條件培養基的細胞介素分泌情形。將圈選的細胞介素定量,並顯示於右側。(圖6B) 用於(圖6A)之細胞所分泌的白血病細胞介素係以ELISA量化分析。條件培養基中細胞介素之量係以PBS對照組標準化,且圖示代表三次獨立實驗取得之細胞介素相對分泌量。siTIFA,TIFA siRNA轉染。(圖6C) 用於(圖6A)之U937細胞係以WST-1試驗分析在10 ng/mL TNF-α與10 μM阿糖胞苷存在下之細胞存活率。實驗結果以第0天標準化,且圖示代表相對細胞存活率之時間過程。(圖6D) 用於(圖6A)之U937細胞係以WST-1試驗分析在5 mg/mL依那西普(etanercept)、50 nM硼替佐米(bortezomib)、或1 mM ABT-263伴隨10 μM阿糖胞苷存在下之細胞存活率。實驗結果以第0天標準化,且圖示代表三次獨立實驗取得之相對細胞存活率之時間過程。(圖6E) 上側,裸鼠骨髓肉瘤生長之實驗程序。小鼠係皮下注射(圖6A)中使用之反轉錄病毒轉導的U937細胞,並以阿糖胞苷處理。腫瘤體積之時間過程。圖6(F) 上側,裸鼠骨髓肉瘤生長之實驗程序。小鼠係皮下注射(圖6A)中使用之反轉錄病毒轉導的U937細胞,並以腹腔注射處理5 mg/kg依那西普、0.5 mg/kg硼替佐米、或50 mg/kg ABT-263結合50 mg/kg阿糖胞苷。腫瘤體積之時間過程(各組n = 4)。(圖6G)如同(圖6E),除了U937穩定細胞經由IVC注射,並分析BM植入情形。左側,利用流式細胞術評估處理小鼠之BM細胞,其係使用抗人類CD45與CD33抗體。右側,將左側(各組n = 7)分析之人類CD45+ CD33+ 細胞百分比繪圖。水平條帶,中間值。SC,皮下注射;IP,腹腔注射;IVC,經由下腔靜脈注射細胞。Figures 6A, 6B, 6C, 6D, 6E, 6F, and 6G show that targeting TIFA enhances the clearance of leukemia myeloid cells. (Fig. 6A) The interleukin secretion profile of the conditioned medium collected by 10 μM cytarabine-treated U937-stabilized cells in Fig. 5F was analyzed using an interleukin-antibody array. The circled interleukins were quantified and displayed on the right. (Fig. 6B) The leukemia interleukin line secreted by the cells (Fig. 6A) was quantitatively analyzed by ELISA. The amount of interleukin in the conditioned medium was normalized to the PBS control group, and the graph represents the relative amount of interleukin obtained by three independent experiments. siTIFA, TIFA siRNA transfection. (Fig. 6C) U937 cell line for (Fig. 6A) Cell viability in the presence of 10 ng/mL TNF-α and 10 μM cytarabine was analyzed by WST-1 assay. The experimental results were normalized on day 0 and the graph represents the time course of relative cell viability. (Fig. 6D) U937 cell line for (Fig. 6A) was analyzed by WST-1 assay at 5 mg/mL etanercept, 50 nM bortezomib, or 1 mM ABT-263. Cell viability in the presence of μM cytarabine. The experimental results were normalized on day 0 and the graph represents the time course of relative cell viability obtained from three independent experiments. (Fig. 6E) Upper side, experimental procedure for growth of osteomyeloma of nude mice. The retrovirus-transduced U937 cells used in the mice were injected subcutaneously (Fig. 6A) and treated with cytarabine. The time course of tumor volume. Figure 6 (F) Upper side, experimental procedure for growth of bone marrow sarcoma in nude mice. The retrovirus-transduced U937 cells used in the mouse subcutaneous injection (Fig. 6A) were injected intraperitoneally with 5 mg/kg etanercept, 0.5 mg/kg bortezomib, or 50 mg/kg ABT- 263 binds 50 mg/kg cytarabine. Time course of tumor volume (n = 4 for each group). (Fig. 6G) As in (Fig. 6E), U937 stable cells were injected via IVC and analyzed for BM implantation. On the left side, BM cells of treated mice were evaluated by flow cytometry using anti-human CD45 and CD33 antibodies. On the right side, plot the percentage of human CD45 + CD33 + cells analyzed on the left side (n = 7 for each group). Horizontal strip, intermediate value. SC, subcutaneous injection; IP, intraperitoneal injection; IVC, injection of cells via the inferior vena cava.

圖7顯示在特定具體實施例中,不同物種TIFA胺基酸序列之比對,包括SEQ ID NO: 1源自智人、SEQ ID NO: 2源自家兔、SEQ ID NO: 3源自犬類、SEQ ID NO: 4源自小鼠、SEQ ID NO: 5源自大鼠、SEQ ID NO: 6源自灰倉鼠、SEQ ID NO: 7源自美洲河狸、SEQ ID NO: 8源自天竺鼠、SEQ ID NO: 9源自歐洲牛、SQE ID NO: 10源自山羊、SQE ID NO: 11源自豬、及SEQ ID NO: 12源自馬,其中指明F1片段(位置1-45,包含N端磷酸化作用/寡聚合作用模體與b1-b2鏈)、F2片段(位置46-103,包含b3-b8鏈)、及F3片段(位置104-184,包含b9-b12鏈),以及位於F2結構域之pThr-辨識模體(如位於SEQ ID NO: 1之約位置51-89,底線之殘基)與位於F3結構域之C端環序列(如位於SEQ ID NO: 1之約位置144-184)。Figure 7 shows an alignment of TIFA amino acid sequences of different species in a particular embodiment, including SEQ ID NO: 1 from Homo sapiens, SEQ ID NO: 2 from rabbits, SEQ ID NO: 3 from canines SEQ ID NO: 4 is derived from mouse, SEQ ID NO: 5 is derived from rat, SEQ ID NO: 6 is derived from gray hamster, SEQ ID NO: 7 is derived from American beaver, SEQ ID NO: 8 is derived from Guinea pig, SEQ ID NO: 9 derived from European cattle, SQE ID NO: 10 derived from goat, SQE ID NO: 11 derived from pig, and SEQ ID NO: 12 derived from horse, wherein F1 fragment is indicated (position 1-45, Including an N-terminal phosphorylation/oligopolymerization motif and a b1-b2 chain), an F2 fragment (positions 46-103, comprising a b3-b8 chain), and an F3 fragment (positions 104-184, comprising a b9-b12 chain), And a pThr-recognition motif located in the F2 domain (eg, a residue located at about position 51-89 of SEQ ID NO: 1, the bottom line) and a C-terminal loop sequence located in the F3 domain (eg, located in SEQ ID NO: 1) About position 144-184).

圖8顯示TIFA的b-三明治結構拓撲型態,其係由十二股b褶板構成。Figure 8 shows the topological profile of the b-sandwich structure of TIFA, which consists of twelve b-sheets.

no

Claims (31)

一種TIFA抑制劑,其係一分離之TIFA胜肽片段,包含二聚合核心胜肽區段,其N端結合Thr9胜肽區段或C端結合TRAF6/TRAF2交互作用胜肽區段,其中 (i) 該Thr9胜肽區段包含一N端磷酸化作用/寡聚合作用模體MX1 X2 FEDX3 DTX4 EX5 X6 T,其序列如SEQ ID NO: 13所示,其中X1 為絲胺酸(S)或蘇胺酸(T)、X2 為絲胺酸(S)、蘇胺酸(T)、天門冬醯胺酸(N)、X3 為丙胺酸(A)或纈胺酸(V)、X4 為麩胺酸(E)或麩胺醯胺酸(Q)、X5 為蘇胺酸(T)或甲硫胺酸(M),且X6 為纈胺酸(V)或白胺酸(L); (ii)該二聚合核心胜肽區段包含六個b鏈,其包括 (a)一b3鏈,其具有b3模體VKFG; (b)一b4鏈,其具有b4模體YX1 F,其中X1 為蘇胺酸(T)或異白胺酸(I); (c)一b5鏈,其具有b5模體QFX1 LX2 X3 F,其中X1 為絲胺酸(S)、纈胺酸(V)、或丙胺酸(A)、X2 為麩胺醯胺酸(Q)或組胺酸(H),且X3 為白胺酸(L)、脯胺酸(P)、或纈胺酸(V); (d)一b6鏈,其具有b6模體SFEIKN; (e)一b7鏈,其具有b7模體LIV;以及 (f)一b8鏈,其具有b8模體X1 X2 L,其中X1 為精胺酸(R)、麩胺醯胺酸(Q)、或離胺酸(K),且X2 為麩胺酸(E)或蘇胺酸(T); 其中該b3至b8鏈之每一者係利用複數個內部環序列從N端至C端依序連接至下一者;以及 (iii)該TRAF6/TRAF2交互作用胜肽區段包含四個b鏈,其包括 (a)一b9鏈,其具有b9模體LX1 KX2 D,其中X1 為天門冬醯胺酸(N)或組胺酸(H),且X2 為甲硫胺酸(M)、白胺酸(L)、纈胺酸(V)、或異白胺酸(I); (b)一b10鏈,其具有b10模體X1 CX2 X3 RF,其中X1 為精胺酸(R)或離胺酸(K)、X2 為甲硫胺酸(M)或白胺酸(L),且X3 為纈胺酸(V)、白胺酸(L)、或異白胺酸(I); (c)一b11鏈,其具有b11模體YQX1 LX2 X3 X4 E,其中X1 為苯丙胺酸(F)或異白胺酸(I)、X2 為甲硫胺酸(M)、白胺酸(L)、纈胺酸(V)、或異白胺酸(I)、X3 為麩胺酸(E)或麩胺醯胺酸(Q),且X4 為離胺酸(K)或精胺酸(R);以及 (d)一b12鏈,其具有b12模體X1 FX2 X3 X4 FX5 X6 ,其中X1 為苯丙胺酸(F)或絲胺酸(S)、X2 為麩胺酸(E)或麩胺醯胺酸(Q)、X3 為蘇胺酸(T)或異白胺酸(I)、X4 為麩胺醯胺酸(Q)、組胺酸(H)、或麩胺酸(E)、X5 為異白胺酸(I)、纈胺酸(V)、絲胺酸(S)、或苯丙胺酸(F),且X6 為白胺酸(L)、甲硫胺酸(M)、或苯丙胺酸(F); 其中該b9至b12鏈之每一者係利用複數個內部環序列從N端至C端依序連接至下一者;以及 一C端環序列連接至該b12鏈的C端; 其中該分離之TIFA胜肽片段不含該Thr9胜肽區段與該TRAF6/TRAF2交互作用胜肽區段兩者。A TIFA inhibitor comprising an isolated TIFA peptide fragment comprising a dimeric core peptide segment, the N-terminus binding to a Thr9 peptide segment or the C-terminus binding to a TRAF6/TRAF2 interaction peptide segment, wherein The Thr9 peptide segment comprises an N-terminal phosphorylation/oligopolymerization motif MX 1 X 2 FEDX 3 DTX 4 EX 5 X 6 T, the sequence of which is set forth in SEQ ID NO: 13, wherein X 1 is silk Aminic acid (S) or threonine (T), X 2 is serine (S), threonine (T), aspartic acid (N), X 3 is alanine (A) or guanamine Acid (V), X 4 is glutamic acid (E) or glutamine proline (Q), X 5 is threonine (T) or methionine (M), and X 6 is proline ( V) or leucine (L); (ii) the dimeric core peptide segment comprises six b chains comprising (a) a b3 chain having a b3 motif VKFG; (b) a b4 chain, It has a b4 motif YX 1 F, wherein X 1 is threonine (T) or isoleucine (I); (c) a b5 chain having a b5 motif QFX 1 LX 2 X 3 F, wherein X 1 is serine (S), proline (V), or alanine (A), X 2 is glutamine proline (Q) or histidine (H), and X 3 is leucine ( L), proline (P), or valine (V); (d) a b6 chain with b6 phantom SFEIKN; (e) a chain b7, b7 having LIV motif; and (f) a chain b8, b8 die body having a X 1 X 2 L, wherein X 1 is arginine (R), bran An amine proline (Q), or an amide acid (K), and X 2 is glutamic acid (E) or threonine (T); wherein each of the b3 to b8 chains utilizes a plurality of internal rings The sequence is sequentially linked from the N-terminus to the C-terminus to the next; and (iii) the TRAF6/TRAF2 interaction peptide segment comprises four b-chains comprising (a) a b9 chain having a b9 motif LX 1 KX 2 D, wherein X 1 is aspartic acid (N) or histidine (H), and X 2 is methionine (M), leucine (L), proline (V) Or isoleucine (I); (b) a b10 chain having b10 motif X 1 CX 2 X 3 RF, wherein X 1 is arginine (R) or lysine (K), X 2 Is methionine (M) or leucine (L), and X 3 is valine (V), leucine (L), or isoleucine (I); (c) a b11 chain, It has b11 motif YQX 1 LX 2 X 3 X 4 E, wherein X 1 is phenylalanine (F) or isoleucine (I), X 2 is methionine (M), leucine (L) , valine (V), or isoleucine (I), X 3 is glutamic acid (E) or bran amine acid amide (Q), and X 4 is from amine (K) or arginine (R &lt); and (d) a chain b12, b12 die body having X 1 FX 2 X 3 X 4 FX 5 X 6, wherein X 1 is phenylalanine (F) or serine (S), X 2 is glutamic acid (E) or glutamine proline (Q), X 3 is threonine (T) or isoleucine (I), and X 4 is glutamine proline ( Q), histidine (H), or glutamic acid (E), X 5 is isoleucine (I), valine (V), serine (S), or phenylalanine (F), And X 6 is leucine (L), methionine (M), or phenylalanine (F); wherein each of the b9 to b12 chains utilizes a plurality of internal loop sequences from N to C a sequence linked to the next; and a C-terminal loop sequence linked to the C-terminus of the b12 chain; wherein the isolated TIFA peptide fragment does not contain the Thr9 peptide segment and the TRAF6/TRAF2 interaction peptide segment By. 如請求項1之TIFA抑制劑,其中 該N端Thr9-磷酸化作用模體係位於相對應於SEQ ID NO: 1位置1-14之處; 該b3模體係位於相對應於SEQ ID NO: 1位置47-50之處; 該b4模體係位於相對應於SEQ ID NO: 1位置58-60之處; 該b5模體係位於相對應於SEQ ID NO: 1位置69-75之處; 該b6模體係位於相對應於SEQ ID NO: 1位置84-89之處; 該b7模體係位於相對應於SEQ ID NO: 1位置96-98之處; 該b8模體係位於相對應於SEQ ID NO: 1位置101-103之處; 該b9模體係位於相對應於SEQ ID NO: 1位置106-110之處; 該b10模體係位於相對應於SEQ ID NO: 1位置114-119之處; 該b11模體係位於相對應於SEQ ID NO: 1位置122-129之處; 該b12模體係位於相對應於SEQ ID NO: 1位置136-143之處;以及/或 該C端環序列係位於相對應於SEQ ID NO: 1位置144-184之處。The TIFA inhibitor of claim 1, wherein the N-terminal Thr9-phosphorylation motif is located at positions 1-14 corresponding to SEQ ID NO: 1; the b3 motif is located at a position corresponding to SEQ ID NO: 1. 47-50 where; the b4 modular system is located at a position corresponding to positions 58-60 of SEQ ID NO: 1; the b5 modular system is located at a position corresponding to positions 69-75 of SEQ ID NO: 1: the b6 modular system Located at position 84-89 corresponding to SEQ ID NO: 1; the b7 motif is located at position 96-98 corresponding to SEQ ID NO: 1; the b8 motif is located at a position corresponding to SEQ ID NO: 1. 101-103; the b9 mode system is located corresponding to position 106-110 of SEQ ID NO: 1; the b10 mode system is located corresponding to position 114-119 of SEQ ID NO: 1; the b11 mode system Located at a position corresponding to positions 122-129 of SEQ ID NO: 1; the b12 motif system is located at a position corresponding to positions 136-143 of SEQ ID NO: 1; and/or the C-terminal loop sequence is located corresponding to SEQ ID NO: 1 position 144-184. 如請求項1之TIFA抑制劑,其中該Thr9胜肽區段更包含二個b鏈,其包括 (a) 一b1鏈,其具有b1模體X1 LX2 X3 T X4 Y,其中X1 為半胱胺酸(C)或絲胺酸(S)、X2 為麩胺醯胺酸(Q)或組胺酸(H)、X3 為甲硫胺酸(M)、異白胺酸(I)、白胺酸(L)或纈胺酸(V),且X4 為纈胺酸(V)、異白胺酸(I)或白胺酸(L);以及 (b) 一b2鏈,其具有b2模體位於位置X1 X2 X3 P,其中X1 為麩胺酸(E)或天門冬胺酸(D)、X2 為離胺酸(K)或蘇胺酸(T),且X3 為白胺酸(L)或苯丙胺酸(F), 其中該b1鏈係利用一內部環序列從N端至C端依序連接至該b2鏈。The TIFA inhibitor of claim 1, wherein the Thr9 peptide segment further comprises two b-chains comprising (a) a b1 chain having a b1 motif X 1 LX 2 X 3 TX 4 Y, wherein X 1 Is cysteine (C) or serine (S), X 2 is glutamine proline (Q) or histidine (H), X 3 is methionine (M), isoleucine (I), leucine (L) or valine (V), and X 4 is valine (V), isoleucine (I) or leucine (L); and (b) a b2 a chain having a b2 motif at position X 1 X 2 X 3 P, wherein X 1 is glutamic acid (E) or aspartic acid (D), and X 2 is lysine (K) or sulphate ( T), and X 3 is leucine (L) or phenylalanine (F), wherein the b1 chain is sequentially linked from the N-terminus to the C-terminus to the b2 chain using an internal loop sequence. 如請求項3之TIFA抑制劑,其中 該b1模體係位於相對應於SEQ ID NO: 1位置15-21之處;及/或 該b2模體係位於相對應於SEQ ID NO: 1位置39-42之處。The TIFA inhibitor of claim 3, wherein the b1 modular system is located at a position corresponding to position 15-21 of SEQ ID NO: 1; and/or the b2 modular system is located at a position corresponding to SEQ ID NO: 1 39-42 Where. 如請求項1之TIFA抑制劑,其中 該Thr9胜肽區段包含一胺基酸序列,係相對應於SEQ ID NO: 1之位置1-45,或一胺基酸序列具備與該序列至少70%相同度; 該二聚合核心胜肽區段包含一胺基酸序列,係相對應於SEQ ID NO: 1之位置46-103,或一胺基酸序列具備與該序列至少70%相同度;以及/或 該TRAF6/TRAF2交互作用胜肽區段包含一胺基酸序列,係相對應於SEQ ID NO: 1之位置104-184,或一胺基酸序列具備與該序列至少70%相同度。The TIFA inhibitor of claim 1, wherein the Thr9 peptide segment comprises an amino acid sequence corresponding to positions 1-45 of SEQ ID NO: 1, or the amino acid sequence has at least 70 % identical; the dimeric core peptide segment comprises an amino acid sequence corresponding to positions 46-103 of SEQ ID NO: 1, or the amino acid sequence is at least 70% identical to the sequence; And/or the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence corresponding to positions 104-184 of SEQ ID NO: 1, or the amino acid sequence is at least 70% identical to the sequence . 如請求項1之TIFA抑制劑,其中 該Thr9胜肽區段包含一胺基酸序列,係選自於由SEQ ID NOs: 23-34組成之群組; 該二聚合核心胜肽區段包含一胺基酸序列,係選自於由SEQ ID NOs: 35-46組成之群組;以及/或 該TRAF6/TRAF2交互作用胜肽區段包含一胺基酸序列,係選自於由SEQ ID NOs: 47-58組成之群組。The TIFA inhibitor of claim 1, wherein the Thr9 peptide segment comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 23-34; the dimeric core peptide segment comprises a An amino acid sequence selected from the group consisting of SEQ ID NOs: 35-46; and/or the TRAF6/TRAF2 interaction peptide segment comprises an amino acid sequence selected from SEQ ID NOs : Group of 47-58. 如請求項1之TIFA抑制劑,其係F1-F2胜肽片段,包含該Thr9胜肽區段與該二聚合核心胜肽區段,其中該Thr9胜肽區段C端係聯結至該二聚合核心胜肽區段的N端。The TIFA inhibitor of claim 1, which is an F1-F2 peptide fragment comprising the Thr9 peptide segment and the dimeric core peptide segment, wherein the Thr9 peptide segment C-terminus is linked to the dimerization The N-terminus of the core peptide segment. 如請求項7之TIFA抑制劑,其包含一胺基酸序列,係選自於由SEQ ID NOs: 71-82組成之群組。The TIFA inhibitor of claim 7, which comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 71-82. 如請求項1之TIFA抑制劑,其係F2-F3胜肽片段,包含該二聚合核心胜肽區段與該TRAF 6交互作用胜肽區段,其中該二聚合核心胜肽區段的C端係聯結至該TRAF 6 交互作用胜肽區段的N端。The TIFA inhibitor of claim 1, which is an F2-F3 peptide fragment comprising the dimeric core peptide segment and the TRAF 6 interaction peptide segment, wherein the C-terminal of the dimeric core peptide segment The line is linked to the N-terminus of the TRAF 6 interaction peptide segment. 如請求項9之TIFA抑制劑,其包含一胺基酸序列,係選自於由SEQ ID NOs: 83-94組成之群組。A TIFA inhibitor according to claim 9 which comprises an amino acid sequence selected from the group consisting of SEQ ID NOs: 83-94. 一種重組型核酸,其包含一核苷酸序列,係編碼如請求項1之TIFA胜肽片段。A recombinant nucleic acid comprising a nucleotide sequence encoding a TIFA peptide fragment of claim 1. 如請求項11之重組型核酸,其係載體,具體而言病毒載體。A recombinant nucleic acid according to claim 11, which is a vector, in particular a viral vector. 一種組合物,其包含如請求項1之TIFA胜肽片段及生理上可接受載體。A composition comprising the TIFA peptide fragment of claim 1 and a physiologically acceptable carrier. 一種如請求項1之TIFA胜肽片段、其編碼核酸、或包含該胜肽或該編碼核酸之組合物之用途,其用於製造藥劑,以於有需求之個體治療TIFA活化相關聯之疾病或病況。A use of the TIFA peptide fragment of claim 1, the nucleic acid encoding the same, or a composition comprising the peptide or the nucleic acid, for use in the manufacture of a medicament for treating a disease associated with TIFA activation in an individual in need thereof or Condition. 如請求項14之用途,其中該疾病或病況為TIFA活化相關聯之癌症或發炎性疾病,或細胞介素刺激性NF-κB活化相關聯之癌症或發炎性疾病。The use of claim 14, wherein the disease or condition is a cancer or inflammatory disease associated with TIFA activation, or a cancer or inflammatory disease associated with interleukin-stimulated NF-κB activation. 如請求項14之用途,其中該疾病或病況為癌症,選自於由白血病、肝癌、胃癌組成之群組。The use of claim 14, wherein the disease or condition is cancer, selected from the group consisting of leukemia, liver cancer, and gastric cancer. 如請求項14之用途,其中該疾病或病況為發炎性疾病,選自於由肝炎、動脈粥樣硬化、肺動脈高壓、心肌病、類風濕性關節炎、發炎性腸病、及法布里病(Fabry disease)組成之群組。The use of claim 14, wherein the disease or condition is an inflammatory disease selected from the group consisting of hepatitis, atherosclerosis, pulmonary hypertension, cardiomyopathy, rheumatoid arthritis, inflammatory bowel disease, and Fabry disease. (Fabry disease) group. 如請求項14之用途,其中該個體患有癌症,且該胜肽片段、該編碼核酸、及該含有該胜肽或該編碼核酸之組合物係結合抗癌治療投予該個體。The use of claim 14, wherein the individual has cancer, and the peptide fragment, the encoding nucleic acid, and the composition comprising the peptide or the encoding nucleic acid are administered to the individual in combination with an anti-cancer therapy. 如請求項18之用途,其中該抗癌治療包含投予抗癌劑,選自於由依托泊苷(etoposide)、伊達比星(idarubicin)、阿糖胞苷(cytarabine)、索拉非尼(sorafenib)、瑞格菲尼(regorafenib)、博萊黴素(bleomycin)、硼替佐米(bortezomib)、硫酸布他卡因(busulfan)、及甲磺酸酯(obatoclax) 組成之群組、或放射線照射。The use of claim 18, wherein the anticancer treatment comprises administering an anticancer agent selected from the group consisting of etoposide, idarubicin, cytarabine, sorafenib ( Group of sorafenib), regorafenib, bleomycin, bortezomib, busulfan, and obatoclax, or radiation Irradiation. 如請求項19之用途,其中該胜肽片段、該編碼核酸、或該組合物係以有效增進該抗癌治療之細胞毒性之量投予。The use of claim 19, wherein the peptide fragment, the encoding nucleic acid, or the composition is administered in an amount effective to increase the cytotoxicity of the anti-cancer treatment. 一種預測白血病預後之方法,其包含測定取自白血病病患樣本中具有FHA結構域之TRAF-交互作用蛋白(TIFA)的表現量,及根據該樣本中TIFA表現量決定該病患之白血病預後,其中該樣本中TIFA量升高代表預後不良。A method for predicting the prognosis of leukemia comprising determining the amount of expression of a TRAF-interacting protein (TIFA) having a FHA domain from a leukemia patient sample, and determining the prognosis of the leukemia of the patient based on the amount of TIFA in the sample. The increase in the amount of TIFA in this sample represents a poor prognosis. 一種TIFA拮抗劑之用途,用於製造藥劑,以抑制個體之細胞介素刺激性NF-κB活化。A use of a TIFA antagonist for the manufacture of a medicament for inhibiting the activation of interleukin-stimulated NF-κB in an individual. 如請求項22之用途,其中該TIFA拮抗劑為靶向TIFA之干擾核酸或TIFA顯性負抑制劑。The use of claim 22, wherein the TIFA antagonist is an interfering nucleic acid or a TIFA dominant negative inhibitor that targets TIFA. 如請求項23之用途,其中該TIFA顯性負抑制劑為如請求項1之TIFA胜肽片段。The use of claim 23, wherein the TIFA dominant negative inhibitor is a TIFA peptide fragment as claimed in claim 1. 如請求項22之用途,其中該個體為具有細胞介素刺激性NF-κB活化相關聯之疾病或病況的病患。The use of claim 22, wherein the individual is a patient having a disease or condition associated with interleukin-stimulated NF-κB activation. 如請求項22之用途,其中該個體為患有發炎性疾病之病患,選自於由肝炎、動脈粥樣硬化、肺動脈高壓、心肌病、類風濕性關節炎、發炎性腸病、及法布里病(Fabry disease)組成之群組。The use of claim 22, wherein the individual is a patient suffering from an inflammatory disease selected from the group consisting of hepatitis, atherosclerosis, pulmonary hypertension, cardiomyopathy, rheumatoid arthritis, inflammatory bowel disease, and Fabry. A group consisting of Fabry disease. 如請求項22之用途,其中該個體為患有癌症之病患。The use of claim 22, wherein the individual is a patient having cancer. 如請求項27之用途,其中該TIFA拮抗劑係結合抗癌治療投予病患。The use of claim 27, wherein the TIFA antagonist is administered to the patient in combination with an anti-cancer therapy. 如請求項28之用途,其中該TIFA拮抗劑係以一量投予,相較於不以該TIFA拮抗劑之抗癌治療,可有效增加該抗癌治療對癌細胞之細胞毒性。The use of claim 28, wherein the TIFA antagonist is administered in a single dose, which is effective to increase the cytotoxicity of the anticancer treatment to cancer cells as compared to anti-cancer treatment without the TIFA antagonist. 如請求項29之用途,其中該癌細胞係選自於由肺癌細胞、肝癌細胞、白血病細胞、乳癌細胞、睾丸胚胎癌細胞、及骨肉瘤細胞組成之群組。The use of claim 29, wherein the cancer cell line is selected from the group consisting of lung cancer cells, liver cancer cells, leukemia cells, breast cancer cells, testicular embryonic cancer cells, and osteosarcoma cells. 如請求項28之用途,其中該病患對該抗癌治療呈現抗性。The use of claim 28, wherein the patient is resistant to the anti-cancer treatment.
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